Query psy5415
Match_columns 160
No_of_seqs 104 out of 177
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 16:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2akla2 g.41.3.5 (A:3-40) Hypo 30.6 4.8 0.00035 23.0 -0.1 15 11-25 19-33 (38)
2 d1fftc_ f.25.1.1 (C:) Cytochro 28.3 27 0.002 24.6 3.9 58 98-155 11-70 (185)
3 d1pvma3 g.41.13.1 (A:143-178) 25.8 4.9 0.00036 22.3 -0.6 17 2-18 14-32 (36)
4 d6rxna_ g.41.5.1 (A:) Rubredox 21.8 13 0.00098 21.5 0.8 16 5-20 22-37 (45)
5 d1x5wa2 g.37.1.1 (A:36-64) Zin 20.8 8.9 0.00064 20.5 -0.2 14 11-24 1-14 (29)
6 d1iroa_ g.41.5.1 (A:) Rubredox 17.6 21 0.0015 21.2 1.1 17 4-20 28-44 (53)
7 d1brfa_ g.41.5.1 (A:) Rubredox 15.2 26 0.0019 20.8 1.1 17 4-20 27-43 (53)
8 d1s24a_ g.41.5.1 (A:) Two-iron 14.8 27 0.0019 21.0 1.0 17 4-20 29-45 (56)
9 d1wiia_ g.41.3.4 (A:) Hypothet 14.6 24 0.0017 23.0 0.8 14 8-21 19-32 (85)
10 d1tfia_ g.41.3.1 (A:) Transcri 14.5 26 0.0019 20.6 0.9 11 9-19 6-16 (50)
No 1
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.61 E-value=4.8 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.5
Q ss_pred CCcccccccCCCCCC
Q psy5415 11 HLAQCLWCDSNGGDN 25 (160)
Q Consensus 11 ~~~~~~~c~~~~~~~ 25 (160)
.++-||+|..+|...
T Consensus 19 ~l~vCPeC~hEW~~~ 33 (38)
T d2akla2 19 ALLVCPECAHEWSPN 33 (38)
T ss_dssp SSEEETTTTEEECTT
T ss_pred CEEECCcccCcCCcc
Confidence 688899999999754
No 2
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=28.31 E-value=27 Score=24.60 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhcccccCCCcccchHHH-HHHHHHHHHhhhhhhhccc
Q psy5415 98 VWLFVGF-VMGFAAVIASCWILYSGFLSIKGAAVWPGFEL-VFQNVFIFAASLVYKFGRQ 155 (160)
Q Consensus 98 ~wLFigf-~l~fggl~gS~~ili~~yv~~~~~~~w~Gva~-vlqN~lI~~Sslv~~f~r~ 155 (160)
.|+|+.- ++.|+++..+..+.-..+-.+.....-+.... .+.+.+++.||.....++.
T Consensus 11 ~w~Fi~se~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~ 70 (185)
T d1fftc_ 11 FWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAI 70 (185)
T ss_dssp HHTTHHHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4666544 68899999886554322211111111111122 3344455556655555443
No 3
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=25.80 E-value=4.9 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCccc--ccc
Q psy5415 2 PLFDFESNPHLAQC--LWC 18 (160)
Q Consensus 2 ~~~~~~~~~~~~~~--~~c 18 (160)
|..|+.-.-..||| |.|
T Consensus 14 pvy~~kgeikvfrcsnpac 32 (36)
T d1pvma3 14 PVYNEKGEIKVFRCSNPAC 32 (36)
T ss_dssp EEECTTSCEEEEEESCTTC
T ss_pred EeecCCCcEEEEEcCCCcc
Confidence 66777777788999 556
No 4
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=21.76 E-value=13 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.9
Q ss_pred CCCCCCCCcccccccC
Q psy5415 5 DFESNPHLAQCLWCDS 20 (160)
Q Consensus 5 ~~~~~~~~~~~~~c~~ 20 (160)
.+|.-|+.++||.|.-
T Consensus 22 ~Fe~LP~dw~CP~C~a 37 (45)
T d6rxna_ 22 PFDQLPDDWCCPVCGV 37 (45)
T ss_dssp CGGGSCTTCBCTTTCC
T ss_pred CHHHCCCCCCCcCCCC
Confidence 4677889999999954
No 5
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.75 E-value=8.9 Score=20.45 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=10.0
Q ss_pred CCcccccccCCCCC
Q psy5415 11 HLAQCLWCDSNGGD 24 (160)
Q Consensus 11 ~~~~~~~c~~~~~~ 24 (160)
+.|+|..|.||-..
T Consensus 1 rPFkC~~CsFDtkq 14 (29)
T d1x5wa2 1 RPFKCNYCSFDTKQ 14 (29)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCcccceecccccC
Confidence 45899999776443
No 6
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=17.60 E-value=21 Score=21.23 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.4
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
..++.-|+.++||.|.-
T Consensus 28 T~F~~LP~dw~CP~C~a 44 (53)
T d1iroa_ 28 TDFKDIPDDWVCPLCGV 44 (53)
T ss_dssp CCGGGSCTTCBCTTTCC
T ss_pred CCHHHCCCCCCCcCCCC
Confidence 35677799999999954
No 7
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=15.19 E-value=26 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.6
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
..++.-|+..+||.|.-
T Consensus 27 T~f~dLP~dw~CP~C~a 43 (53)
T d1brfa_ 27 TKFEELPDDWVCPICGA 43 (53)
T ss_dssp CCGGGSCTTCBCTTTCC
T ss_pred CCHHHCCCCCCCcCCCC
Confidence 45677799999999954
No 8
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=14.81 E-value=27 Score=21.01 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.5
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
..+|.-|+..+||.|.-
T Consensus 29 T~F~~LP~dw~CP~C~a 45 (56)
T d1s24a_ 29 TRFEDIPDDWCCPDCGA 45 (56)
T ss_dssp CCGGGCCTTCCCSSSCC
T ss_pred CChhhCCCCCCCcCCCC
Confidence 35677799999999954
No 9
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.64 E-value=24 Score=23.04 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=10.2
Q ss_pred CCCCCcccccccCC
Q psy5415 8 SNPHLAQCLWCDSN 21 (160)
Q Consensus 8 ~~~~~~~~~~c~~~ 21 (160)
.-|..|.||+|+-+
T Consensus 19 kL~t~F~CPfCnh~ 32 (85)
T d1wiia_ 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCceEcCCCCCCC
Confidence 34567999999643
No 10
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.48 E-value=26 Score=20.57 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=8.9
Q ss_pred CCCCccccccc
Q psy5415 9 NPHLAQCLWCD 19 (160)
Q Consensus 9 ~~~~~~~~~c~ 19 (160)
.++.|+||.|.
T Consensus 6 ~T~~~~C~kC~ 16 (50)
T d1tfia_ 6 QTDLFTCGKCK 16 (50)
T ss_dssp ECCCSCCSSSC
T ss_pred ccCCEECCCCC
Confidence 46899999994
Done!