BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5417
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 65/100 (65%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP Y+SEFRF + + LE +V ELH+ G TP++AE+++L+ K L
Sbjct: 128 SELGDYDPDECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLS 187
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLW 261
+YGVDLH + +E LG+ +G+++ R+++++ + W
Sbjct: 188 MYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAW 227
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLV 41
E+T GF+ P+ A K L+K CV+HH+FFRL+
Sbjct: 253 ESTIGFKLPNHRAAKRLWKVCVEHHTFFRLL 283
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 9 DEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDI 68
D EN + P++ K + + H SF V+ P + RY LQ++ DI
Sbjct: 50 DAENQKNWLDPAKEIKKQV-RSGAWHFSFN--VKFYPPDPAQLSEDITRYYLCLQLRDDI 106
Query: 69 LQGRLPVSFELSAELGAYVVQ 89
+ GRLP SF A LG+Y VQ
Sbjct: 107 VSGRLPCSFVTLALLGSYTVQ 127
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ P+ A K L+K CV+H
Sbjct: 253 ESTIGFKLPNHRAAKRLWKVCVEH 276
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 65/100 (65%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP Y+SEFRF + + LE +V ELH+ G TP++AE+++L+ K L
Sbjct: 128 SELGDYDPDECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLS 187
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLW 261
+YGVDLH + +E LG+ +G+++ R+++++ + W
Sbjct: 188 MYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAW 227
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLV 41
E+T GF+ P+ A K L+K CV+HH+FFRL+
Sbjct: 253 ESTIGFKLPNHRAAKRLWKVCVEHHTFFRLL 283
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 9 DEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDI 68
D EN + P++ K + + H SF V+ P + RY LQ++ DI
Sbjct: 50 DAENQKNWLDPAKEIKKQV-RSGAWHFSFN--VKFYPPDPAQLSEDITRYYLCLQLRDDI 106
Query: 69 LQGRLPVSFELSAELGAYVVQ 89
+ GRLP SF A LG+Y VQ
Sbjct: 107 VSGRLPCSFVTLALLGSYTVQ 127
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ P+ A K L+K CV+H
Sbjct: 253 ESTIGFKLPNHRAAKRLWKVCVEH 276
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP H YVS+F+ +Q+ LE +V ELH+ TP+QA+L +L+ K L
Sbjct: 143 SELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLS 202
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLW 261
+YGVDLH + ++ LG+ +G++V ++K+++ + W
Sbjct: 203 MYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPW 242
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFR 39
IR ++ E+T GF+ PS A K L+K CV+HH+FFR
Sbjct: 259 IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 48 PPD---IISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQ 89
PPD + RY LQ++QDI+ GRLP SF A LG+Y +Q
Sbjct: 98 PPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ 142
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ PS A K L+K CV+H
Sbjct: 268 ESTIGFKLPSYRAAKKLWKVCVEH 291
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP H YVS+F+ +Q+ LE +V ELH+ TP+QA+L +L+ K L
Sbjct: 126 SELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLS 185
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLW 261
+YGVDLH + ++ LG+ +G++V ++K+++ + W
Sbjct: 186 MYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPW 225
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFR 39
IR ++ E+T GF+ PS A K L+K CV+HH+FFR
Sbjct: 242 IRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 279
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 48 PPD---IISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQ 89
PPD + RY LQ++QDI+ GRLP SF A LG+Y +Q
Sbjct: 81 PPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ 125
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ PS A K L+K CV+H
Sbjct: 251 ESTIGFKLPSYRAAKKLWKVCVEH 274
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP H YVS+F+ +Q+ LE +V ELH+ TP+QA+L +L+ K L
Sbjct: 48 SELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLS 107
Query: 222 L 222
+
Sbjct: 108 M 108
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 48 PPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCK 91
P + RY LQ++QDI+ GRLP SF A LG+Y +Q +
Sbjct: 6 PAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSE 49
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAAL--------ESRVAELHRDLSGQTPSQAELNY 213
A+ GDYDP H G++++ + L E R+ + + G+ +AE+ Y
Sbjct: 149 AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY 208
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGI 247
L ++L +YGV+ + + E LG+ G+
Sbjct: 209 LKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGL 242
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 45 SNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
N +++ ++ FFLQ+K+ IL ++ E S L +Y VQ KY
Sbjct: 104 ENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 151
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAAL--------ESRVAELHRDLSGQTPSQAELNY 213
A+ GDYDP H G++++ + L E R+ + + G+ +AE+ Y
Sbjct: 149 AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY 208
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGI 247
L ++L +YGV+ + + E LG+ G+
Sbjct: 209 LKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGL 242
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 45 SNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
N +++ ++ FFLQ+K+ IL ++ E S L +Y VQ KY
Sbjct: 104 ENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 151
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAAL--------ESRVAELHRDLSGQTPSQAELNY 213
A+ GDYDP H G++++ + L E R+ + + G+ +AE+ Y
Sbjct: 131 AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY 190
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGI 247
L ++L +YGV+ + + E LG+ G+
Sbjct: 191 LKIAQDLEMYGVNYFTIRNKKGTELLLGVDALGL 224
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAAL--------ESRVAELHRDLSGQTPSQAELNY 213
A+ GDYDP H G++++ + L E R+ + + G+ +AE+ Y
Sbjct: 136 AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY 195
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGI 247
L ++L +YGV+ + + E LG+ G+
Sbjct: 196 LKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGL 229
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 45 SNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
N +++ ++ FFLQ+K+ IL ++ E S L +Y VQ KY
Sbjct: 91 ENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 138
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 132 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 191
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 192 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 227
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 102 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 134
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 134 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 193
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 194 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 229
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 104 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 136
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 132 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 191
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 192 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 227
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 102 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 134
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 134 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 193
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 194 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 229
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 104 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 136
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 132 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 191
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 192 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 227
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 102 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 134
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H PGY++ R + E R+ H + G + + Y
Sbjct: 134 AKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEY 193
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YGV+ + + E +LG+ G+ +
Sbjct: 194 LKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNI 229
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 104 FFLQVKEAILNDEIYCPPETAVLLASYAVQAKY 136
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDY+ H GY+S R + E R+ H + G A L Y
Sbjct: 131 AKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEY 190
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L +YG++ + + + +LG+ G+ +
Sbjct: 191 LKIAQDLEMYGINYFEIKNKKGTDLWLGVDALGLNI 226
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + LG+Y VQ K+
Sbjct: 101 FFLQVKEGILSDEIYCPPETAVLLGSYAVQAKF 133
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 165 GDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDR 216
GD++P H PG+++ R + E + ++ G A + YL
Sbjct: 135 GDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKI 194
Query: 217 VKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
++L +YGV+ + + + E +LG+ G+ +
Sbjct: 195 AQDLEMYGVNYFEIRNKKNTELWLGVDALGLNI 227
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 165 GDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDR 216
GD++ H GY++ + + E R+ H + G A L YL
Sbjct: 135 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 194
Query: 217 VKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
++L +YGV+ + + E +LG+ G+ +
Sbjct: 195 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNI 227
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 102 FFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 134
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 165 GDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDR 216
GD++ H GY++ + + E R+ H + G A L YL
Sbjct: 135 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 194
Query: 217 VKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
++L +YGV+ + + E +LG+ G+ +
Sbjct: 195 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNI 227
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 102 FFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 134
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
++ GD++ H GY++ + + E R+ H + G A L Y
Sbjct: 129 SKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEY 188
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVV 249
L ++L YGV+ + + E +LG+ G+ +
Sbjct: 189 LKIAQDLEXYGVNYFSIKNKKGSELWLGVDALGLNI 224
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
FFLQ+K+ IL + E + L +Y VQ KY
Sbjct: 99 FFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 131
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 61 FLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSFE + E G + Q ++
Sbjct: 33 YVQARDDILNGSHPVSFEKACEFGGFQAQIQF 64
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 163 ELGDYDPRRHSPGYVSEFRFTSHQ---SAALESRVAELHRDLSGQTPSQAELNYLDRVKN 219
+ G + +H PG++ F + E R+ + H++ + +A++ Y+ ++
Sbjct: 63 QFGPHVEHKHKPGFLDLKEFLPKEYIKQRGAEKRIFQEHKNCGEMSEIEAKVKYVKLARS 122
Query: 220 LPLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLW 261
L YGV + G++ + LG+T ++ + K K W
Sbjct: 123 LRTYGVSFFLVKEKMKGKNKLVPRLLGITKDSVMRVDEKTKEVLQEW 169
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 134 AYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAALESR 193
A G+I S ++G + LW L K+S+A++ + +H GY+++ + + E
Sbjct: 42 AAGRIASESSIGTWTTLWKLPEMAKRSMAKV--FYLEKHGEGYIAKIAYP--LTLFEEGS 97
Query: 194 VAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLH---PVLGEDSIEYFLGL 242
+ +L ++G L L + P Y H P G I F+G+
Sbjct: 98 LVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGV 149
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYV--SEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H PG++ +F + E ++ H++ + +A++ Y+ ++L
Sbjct: 38 QFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSL 97
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 98 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 147
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSF+ + E Y Q ++
Sbjct: 7 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQF 39
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYV--SEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H PG++ +F + E ++ H++ + +A++ Y+ ++L
Sbjct: 52 QFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSL 111
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 112 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 161
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSF+ + E Y Q ++
Sbjct: 21 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQF 53
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYVS--EFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H PG++ +F + E ++ H++ + +A++ Y+ ++L
Sbjct: 47 QFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSL 106
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 107 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 156
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSF+ + E Y Q ++
Sbjct: 16 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQF 48
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 139 HSRCTLGLSSMLWILASC--LKKSLAELGDYDPRRHSPGYVSEFRFTS--HQSAAL 190
H C+LG+S + LA+C K +A + PR H G++ RF + QSA+L
Sbjct: 124 HGXCSLGIS-VEATLAACQVAGKIIAHINPQXPRTHGDGFIHIDRFAAVYEQSASL 178
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGF 106
++Q + DIL G PVSF+ + E Y QC+ + ++++ GF
Sbjct: 27 LYVQARDDILNGSHPVSFDKACEFAGY--QCQIQFGPHNEQKHKPGF 71
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYV--SEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H G++ +F + E ++ + H++ + +A++ Y+ ++L
Sbjct: 38 QFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 97
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 98 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 147
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGF 106
++Q + DIL G PVSF+ + E + QC+ + ++++ GF
Sbjct: 7 LYVQARDDILNGSHPVSFDKACEFAGF--QCQIQFGPHNEQKHKAGF 51
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLWK 262
+ G LHP L + I GLTP + KI V +Y+ +
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYV--SEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H G++ +F + E ++ + H++ + +A++ Y+ ++L
Sbjct: 63 QFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 122
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 123 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 172
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGF 106
++Q + DIL G PVSF+ + E + QC+ + ++++ GF
Sbjct: 32 LYVQARDDILNGSHPVSFDKACEFAGF--QCQIQFGPHNEQKHKAGF 76
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 60 FFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGF 106
++Q + DIL G PVSF+ + E + QC+ + ++++ GF
Sbjct: 186 LYVQARDDILNGSHPVSFDKACEFAGF--QCQIQFGPHNEQKHKAGF 230
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 163 ELGDYDPRRHSPGYVS--EFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220
+ G ++ ++H G++ +F + E ++ + H++ + +A++ Y+ ++L
Sbjct: 217 QFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 276
Query: 221 PLYGVDL----HPVLGEDS-IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
YGV + G++ + LG+T ++ + K K W +N
Sbjct: 277 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 326
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 56 FRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYG 105
+ YQ +LQ +DI++ PV F L A + K LA+T + +G
Sbjct: 61 YAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVHG 110
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 56 FRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYG 105
+ YQ +LQ +DI++ PV F L A + K LA+T + +G
Sbjct: 60 YAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVHG 109
>pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|A Chain A, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 609
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 147 SSMLW--ILASCLKKSLAELGDYDPRRHSPGY 176
SS L+ +L CL+K +A L Y PRR+ P Y
Sbjct: 378 SSTLFSALLIKCLEKEVAALCRYTPRRNIPPY 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,156,019
Number of Sequences: 62578
Number of extensions: 324354
Number of successful extensions: 637
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 73
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)