Query psy5417
Match_columns 265
No_of_seqs 123 out of 838
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:55:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 1.4E-50 3.1E-55 394.6 15.9 187 2-265 54-240 (616)
2 KOG3527|consensus 100.0 3.8E-38 8.2E-43 317.0 10.5 185 2-264 75-259 (975)
3 KOG0792|consensus 100.0 9E-34 1.9E-38 290.2 12.8 181 11-264 73-260 (1144)
4 KOG3529|consensus 100.0 8E-30 1.7E-34 254.3 8.7 188 2-265 56-255 (596)
5 smart00295 B41 Band 4.1 homolo 99.9 1.3E-23 2.8E-28 180.6 13.1 152 2-228 47-207 (207)
6 PF00373 FERM_M: FERM central 99.9 7.7E-23 1.7E-27 163.7 11.9 118 47-228 1-126 (126)
7 KOG3531|consensus 99.8 2.6E-22 5.7E-27 202.2 0.8 184 2-264 83-266 (1036)
8 KOG4371|consensus 99.6 5.3E-16 1.2E-20 159.7 5.6 181 13-265 558-770 (1332)
9 KOG4261|consensus 99.5 1.1E-15 2.4E-20 153.8 -0.2 166 12-254 168-342 (1003)
10 KOG0248|consensus 99.2 7E-12 1.5E-16 125.6 3.9 163 37-264 676-845 (936)
11 cd00836 FERM_C FERM_C domain. 99.1 1.6E-10 3.4E-15 89.6 5.5 44 222-265 1-44 (92)
12 KOG4371|consensus 99.1 9.9E-11 2.1E-15 121.4 5.7 239 12-262 81-350 (1332)
13 KOG3552|consensus 98.6 7.6E-08 1.7E-12 99.6 6.9 144 35-249 261-429 (1298)
14 PF09380 FERM_C: FERM C-termin 98.1 2.9E-06 6.3E-11 65.1 3.3 33 232-264 1-35 (90)
15 PF09379 FERM_N: FERM N-termin 98.0 7.5E-06 1.6E-10 61.0 4.1 40 2-45 40-80 (80)
16 KOG4257|consensus 97.6 0.00012 2.5E-09 74.8 5.9 157 33-253 90-258 (974)
17 KOG3531|consensus 97.5 2E-05 4.2E-10 81.5 -0.7 176 14-264 230-406 (1036)
18 KOG3727|consensus 96.6 0.0018 3.9E-08 65.0 3.7 65 187-251 516-581 (664)
19 KOG3527|consensus 96.5 0.00082 1.8E-08 70.1 0.5 183 11-265 434-620 (975)
20 cd00435 ACBP Acyl CoA binding 96.2 0.04 8.7E-07 42.5 8.6 31 194-224 54-85 (85)
21 PF00887 ACBP: Acyl CoA bindin 95.6 0.051 1.1E-06 41.6 6.8 26 194-219 56-81 (87)
22 PTZ00458 acyl CoA binding prot 93.6 0.56 1.2E-05 36.7 8.1 30 195-224 57-87 (90)
23 COG4281 ACB Acyl-CoA-binding p 93.3 0.35 7.7E-06 37.0 6.3 30 195-224 56-86 (87)
24 KOG3784|consensus 88.6 2.6 5.5E-05 41.3 8.7 55 210-264 247-309 (407)
25 KOG0817|consensus 83.0 4 8.6E-05 34.6 6.2 36 195-230 59-95 (142)
26 KOG4335|consensus 64.2 2 4.2E-05 43.3 -0.4 56 34-89 327-382 (558)
27 KOG3878|consensus 40.3 55 0.0012 31.8 5.1 26 194-219 91-116 (469)
28 KOG3727|consensus 39.3 5.2 0.00011 40.9 -1.9 77 13-92 238-315 (664)
29 KOG3530|consensus 32.2 22 0.00048 36.6 1.2 53 11-64 264-321 (616)
30 smart00462 PTB Phosphotyrosine 30.5 78 0.0017 25.0 3.9 33 232-264 40-74 (134)
31 cd00934 PTB Phosphotyrosine-bi 28.4 83 0.0018 24.2 3.7 33 232-264 38-72 (123)
32 PF12481 DUF3700: Aluminium in 26.3 1.1E+02 0.0024 28.0 4.4 58 192-253 105-172 (228)
No 1
>KOG3530|consensus
Probab=100.00 E-value=1.4e-50 Score=394.58 Aligned_cols=187 Identities=45% Similarity=0.782 Sum_probs=182.1
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSA 81 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~ 81 (265)
|||+|..+ ..+||||.|+|.||++- ++|++|+||||||+.+|..|+++.|||+||||+|+||++|||+|+.+.|+
T Consensus 54 Lry~D~~~---~~hWLD~tK~I~kqvK~--gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~Aa 128 (616)
T KOG3530|consen 54 LRYQDSSK---VRHWLDPTKSIKKQVKI--GPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAA 128 (616)
T ss_pred eeeechhh---cceecCcchhHHHHhcc--CCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHH
Confidence 89999996 77899999999999975 78999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccc
Q psy5417 82 ELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSL 161 (265)
Q Consensus 82 ~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 161 (265)
+||||++|
T Consensus 129 eLaAl~lQ------------------------------------------------------------------------ 136 (616)
T KOG3530|consen 129 ELAALILQ------------------------------------------------------------------------ 136 (616)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 99999999
Q ss_pred cccCCCCCCCCCCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEE
Q psy5417 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLG 241 (265)
Q Consensus 162 ~~~gd~~~~~h~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lG 241 (265)
+++|||++..|..+|+++++|+|.|++++|.+|.+.|++++|++|++||++||+.|+.|++|||++|+|++++|+++.||
T Consensus 137 sELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LG 216 (616)
T KOG3530|consen 137 SELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLG 216 (616)
T ss_pred HHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEee
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCceEEeeCCceeeeeecCCCC
Q psy5417 242 LTPAGIVVLRNKIKVASYLWKESN 265 (265)
Q Consensus 242 V~~~GI~v~~~~~~~~~f~W~~i~ 265 (265)
++|.||.||+++.++..|.|++|+
T Consensus 217 LTptGIlvf~g~~kig~f~WpkI~ 240 (616)
T KOG3530|consen 217 LTPTGILVFEGKKKIGLFFWPKIT 240 (616)
T ss_pred ccCceEEEEECCceeeEEecchhe
Confidence 999999999999999999999985
No 2
>KOG3527|consensus
Probab=100.00 E-value=3.8e-38 Score=316.98 Aligned_cols=185 Identities=34% Similarity=0.679 Sum_probs=178.5
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSA 81 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~ 81 (265)
|+|++..+ ...|||+.+.++||+. ..+|.|.|.|||||++|..|..+++||.++||+|+||+.|||||++-..+
T Consensus 75 l~~~~~~~---~~~wlD~~k~i~k~vr---~~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~a 148 (975)
T KOG3527|consen 75 LTYLTSSE---QKNWLDPAKEIKKQVR---SFPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHA 148 (975)
T ss_pred eEEecCCC---Cccccccchhhhcccc---cCccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhh
Confidence 78888765 7889999999999998 46999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccc
Q psy5417 82 ELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSL 161 (265)
Q Consensus 82 ~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 161 (265)
.|++|.+|
T Consensus 149 llgsy~vq------------------------------------------------------------------------ 156 (975)
T KOG3527|consen 149 LLGSYTVQ------------------------------------------------------------------------ 156 (975)
T ss_pred hhhhHhHH------------------------------------------------------------------------
Confidence 99999999
Q ss_pred cccCCCCCCCCCCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEE
Q psy5417 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLG 241 (265)
Q Consensus 162 ~~~gd~~~~~h~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lG 241 (265)
+++|||+|..|+..|++++++-|+|+.+++.+++++|+.++||+|.+|+..||..|++|.+|||++|+++|++|+.+.||
T Consensus 157 ~E~gdYd~ee~~~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lg 236 (975)
T KOG3527|consen 157 SELGDYDPEEHGSDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLG 236 (975)
T ss_pred hHhccCCHHHcccchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeec
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCceEEeeCCceeeeeecCCC
Q psy5417 242 LTPAGIVVLRNKIKVASYLWKES 264 (265)
Q Consensus 242 V~~~GI~v~~~~~~~~~f~W~~i 264 (265)
||++|+.||+++.+++.|.||.|
T Consensus 237 vca~glliy~d~lrinrfawPKi 259 (975)
T KOG3527|consen 237 VCASGLLIYRDRLRINRFAWPKI 259 (975)
T ss_pred ccccceEEeechhhhccccCchh
Confidence 99999999999999999999986
No 3
>KOG0792|consensus
Probab=100.00 E-value=9e-34 Score=290.20 Aligned_cols=181 Identities=28% Similarity=0.479 Sum_probs=159.1
Q ss_pred CCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhh
Q psy5417 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQC 90 (265)
Q Consensus 11 e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qa 90 (265)
.++..|+|++|.++||+.|.+ .+..++||||||+++|..|.++.|||+||||+|+||++||+||+..+|++||+|++||
T Consensus 73 ~~~~rWvdleK~lkkql~k~a-~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQa 151 (1144)
T KOG0792|consen 73 PDQIRWVDLEKPLKKQLIKVA-NPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQA 151 (1144)
T ss_pred cCccceeccchhHHHhhhccC-CCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhh
Confidence 468899999999999998864 5779999999999999999999999999999999999999999999999999999997
Q ss_pred hcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCC
Q psy5417 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPR 170 (265)
Q Consensus 91 e~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 170 (265)
||||+ +..
T Consensus 152 e~gdy------------------------------------------------------------------------~~~ 159 (1144)
T KOG0792|consen 152 EFGDY------------------------------------------------------------------------NQK 159 (1144)
T ss_pred hhcch------------------------------------------------------------------------hhh
Confidence 76664 322
Q ss_pred CCCC--CCccccccCccchH----HHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEEEeC
Q psy5417 171 RHSP--GYVSEFRFTSHQSA----ALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTP 244 (265)
Q Consensus 171 ~h~~--~yl~~~~~~p~~~~----~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGV~~ 244 (265)
.+.. .|+..+.+.+.+++ +++.+|+++|+.+.|+++.+||..||+.|++|++||+++|+++|..|..+.|||..
T Consensus 160 ~s~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~ 239 (1144)
T KOG0792|consen 160 QSQDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIAR 239 (1144)
T ss_pred cCCccchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeee
Confidence 2222 24444444555544 88999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEee-CCceeeeeecCCC
Q psy5417 245 AGIVVLR-NKIKVASYLWKES 264 (265)
Q Consensus 245 ~GI~v~~-~~~~~~~f~W~~i 264 (265)
.||.|+. +......|+|.+|
T Consensus 240 ~Gi~V~~~~g~~~~~~~W~di 260 (1144)
T KOG0792|consen 240 VGILVPGQNGRQSVKFPWGDI 260 (1144)
T ss_pred ceeEeeccCccccceechhhh
Confidence 9999999 4567889999887
No 4
>KOG3529|consensus
Probab=99.96 E-value=8e-30 Score=254.31 Aligned_cols=188 Identities=22% Similarity=0.357 Sum_probs=162.7
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCC-CccchhhHHHHHHHHHHHHhcCCccCCHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPP-DIISSRFRYQFFLQIKQDILQGRLPVSFELS 80 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~-~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a 80 (265)
|+|+|.++ +..||.+++++..|..+. ..+++|+|+|||||++.. .++++.|.+|||||+|..|+.+.++|+.|++
T Consensus 56 l~~~d~~~---~~~wl~~d~~v~~~d~~k-~~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~ 131 (596)
T KOG3529|consen 56 LQYTDSKG---EPTWLKLDKKVLDQDVPK-DSPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETS 131 (596)
T ss_pred cccccCCC---CcchhhccchhhhhhcCC-CCCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Confidence 68889887 889999999999886543 234999999999999997 8999999999999999999999999999999
Q ss_pred HHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhccc
Q psy5417 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKS 160 (265)
Q Consensus 81 ~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 160 (265)
+.||||++||.+||
T Consensus 132 ~~las~~vqa~~gd------------------------------------------------------------------ 145 (596)
T KOG3529|consen 132 VLLASYAVQAKYGD------------------------------------------------------------------ 145 (596)
T ss_pred HHHHHHHHHHHhcc------------------------------------------------------------------
Confidence 99999999976665
Q ss_pred ccccCCCCCCCCCCCCccccccCcc--------chHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeec
Q psy5417 161 LAELGDYDPRRHSPGYVSEFRFTSH--------QSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLG 232 (265)
Q Consensus 161 ~~~~gd~~~~~h~~~yl~~~~~~p~--------~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~ 232 (265)
|+...|..+++.....+|. +...|+.+|.+.|..+.||+.++|+++||++++.||.||+.+|+++|
T Consensus 146 ------y~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~ 219 (596)
T KOG3529|consen 146 ------YDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKN 219 (596)
T ss_pred ------ccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCC
Confidence 3333344444444444444 35779999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeCCceEEeeCCce---eeeeecCCCC
Q psy5417 233 EDSIEYFLGLTPAGIVVLRNKIK---VASYLWKESN 265 (265)
Q Consensus 233 ~~~~~~~lGV~~~GI~v~~~~~~---~~~f~W~~i~ 265 (265)
+.|..+||||++.|+.+|+...+ -..|+|++|.
T Consensus 220 k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eir 255 (596)
T KOG3529|consen 220 KKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIR 255 (596)
T ss_pred CCCCccccccccCCccccccccCCCCCCCCCccccC
Confidence 99999999999999999996543 3699999984
No 5
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.90 E-value=1.3e-23 Score=180.60 Aligned_cols=152 Identities=25% Similarity=0.401 Sum_probs=118.4
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCcc-chhhHHHHHHHHHHHHhcCCccCCHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDII-SSRFRYQFFLQIKQDILQGRLPVSFELS 80 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~-~~~tR~l~ylQ~r~dil~grlp~~~e~a 80 (265)
|.+.+.++ +...|+++.+++.++..+. .++.|.||++||++++..+. |+...+++|.|+|+|+++|++||+.+.+
T Consensus 47 L~~~~~~~--~~~~~l~~~~~l~~~~~~~--~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~ 122 (207)
T smart00295 47 LQFEDPDE--DLSHWLDPAKTLLDQDVKS--EPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEA 122 (207)
T ss_pred EEEEcCCC--CcCeeCCCccCHHHhcCCC--CCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHH
Confidence 44555543 2337999999999998642 57899999999998765555 5555559999999999999999999999
Q ss_pred HHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhccc
Q psy5417 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKS 160 (265)
Q Consensus 81 ~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 160 (265)
+.||||.+|+++||.......
T Consensus 123 ~~Laal~~q~~~gd~~~~~~~----------------------------------------------------------- 143 (207)
T smart00295 123 LLLAALALQAEFGDYDEELHV----------------------------------------------------------- 143 (207)
T ss_pred HHHHHHHHHHHhcCCChHhcC-----------------------------------------------------------
Confidence 999999999998886422100
Q ss_pred ccccCCCCCCCCCCCCccccccCccc--------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceee
Q psy5417 161 LAELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLH 228 (265)
Q Consensus 161 ~~~~gd~~~~~h~~~yl~~~~~~p~~--------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f 228 (265)
...+.....++|.+ .+.++.+|.+.|+++.|+++.+|+.+||+.|++||+||+++|
T Consensus 144 ------------~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 144 ------------LLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred ------------CccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 00111112234443 467899999999999999999999999999999999999986
No 6
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.89 E-value=7.7e-23 Score=163.71 Aligned_cols=118 Identities=31% Similarity=0.487 Sum_probs=89.5
Q ss_pred CCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCcc
Q psy5417 47 PPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVA 126 (265)
Q Consensus 47 ~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 126 (265)
||..+.|+.+++++|+|+|+||++|++||+.+++++||||++|+++||.......
T Consensus 1 ~p~~~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~------------------------- 55 (126)
T PF00373_consen 1 DPLHIDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEH------------------------- 55 (126)
T ss_dssp SGGGTTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTS-------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCccccc-------------------------
Confidence 5777999999999999999999999999999999999999999998875422110
Q ss_pred ccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCc--------cchHHHHHHHHHHH
Q psy5417 127 CPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTS--------HQSAALESRVAELH 198 (265)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p--------~~~~~l~~~I~e~h 198 (265)
..++..+.. . ......++| .....|+++|.+.|
T Consensus 56 ------------------------------------~~~~~~~~~--~-~~~~~~~iP~~~~~~~~~~~~~~~~~I~~~~ 96 (126)
T PF00373_consen 56 ------------------------------------SSGYIDPEI--K-EFQLENFIPKAPKLIKKMKQKEWEKRILEQH 96 (126)
T ss_dssp ------------------------------------STTTTTGSH--H-CTCGHGTSSHHHHHHCCSTHHHHHHHHHHHH
T ss_pred ------------------------------------Ccccccccc--c-chhhhhhhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 000000000 0 000013566 34788999999999
Q ss_pred HhhcCCCHHHHHHHHHHHhccCCCCCceee
Q psy5417 199 RDLSGQTPSQAELNYLDRVKNLPLYGVDLH 228 (265)
Q Consensus 199 ~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f 228 (265)
+++.|+++.+|+..||+.|++||+||+++|
T Consensus 97 ~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 97 KKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 999999999999999999999999999987
No 7
>KOG3531|consensus
Probab=99.84 E-value=2.6e-22 Score=202.24 Aligned_cols=184 Identities=25% Similarity=0.445 Sum_probs=165.6
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSA 81 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~ 81 (265)
|.|.|.+. ...|||++|++-+|+.. ....++.|-||||++||..+.++.+||+|-+|+++|+..|++.|.--+|.
T Consensus 83 lef~~~~~---~~~wld~~kpi~rqi~~--~~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~ 157 (1036)
T KOG3531|consen 83 LEFQDING---NHCWLDLEKPILRQIRR--PKDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAA 157 (1036)
T ss_pred eeeccccC---ceEEecccchHHHHhcC--ccchhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCchhh
Confidence 34556664 57799999999999975 24568899999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccc
Q psy5417 82 ELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSL 161 (265)
Q Consensus 82 ~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 161 (265)
.|+++.+|
T Consensus 158 lLss~~~q------------------------------------------------------------------------ 165 (1036)
T KOG3531|consen 158 LLSSHIVQ------------------------------------------------------------------------ 165 (1036)
T ss_pred hhhccccc------------------------------------------------------------------------
Confidence 99999999
Q ss_pred cccCCCCCCCCCCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEE
Q psy5417 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLG 241 (265)
Q Consensus 162 ~~~gd~~~~~h~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lG 241 (265)
.++|||... -...||+...|+|.| ...+.+|++-|+++.|++|.++.++.|..|.++++||+++|.++|.+|..+-++
T Consensus 166 se~gdf~~~-~d~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~la 243 (1036)
T KOG3531|consen 166 SEIGDFDEY-LDREHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLA 243 (1036)
T ss_pred ccCCchhcc-ccceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHH
Confidence 455666321 235578888999999 888899999999999999999999999999999999999999999999999999
Q ss_pred EeCCceEEeeCCceeeeeecCCC
Q psy5417 242 LTPAGIVVLRNKIKVASYLWKES 264 (265)
Q Consensus 242 V~~~GI~v~~~~~~~~~f~W~~i 264 (265)
|..-||.||++-.++.+|.|.+|
T Consensus 244 v~hmgi~Vfr~~tkinTf~wAki 266 (1036)
T KOG3531|consen 244 VAHMGILVFRGLTKINTFNWAKI 266 (1036)
T ss_pred HHhhhhHHHhcceeccCCCHHHH
Confidence 99999999999999999999887
No 8
>KOG4371|consensus
Probab=99.60 E-value=5.3e-16 Score=159.67 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=145.8
Q ss_pred cccccCCCccccccc---cc-----cCCCceeeEEeeeccCCCCCCccchhh---HHHHHHHHHHHHhcCCccCCHHHHH
Q psy5417 13 TYGFETPSRSACKHL---YK-----CCVDHHSFFRLVQVSSNPPPDIISSRF---RYQFFLQIKQDILQGRLPVSFELSA 81 (265)
Q Consensus 13 ~~~wl~~~~~l~kq~---~k-----~~~~~~~l~frVkfy~~~p~~l~~~~t---R~l~ylQ~r~dil~grlp~~~e~a~ 81 (265)
+.-+.....+|.+.. || ...+|.++++||+||+.+-..+.++++ |+.+|+|+|+++++.+..-.++.+.
T Consensus 558 eh~~~e~~drLls~sasewk~~As~~~~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f 637 (1332)
T KOG4371|consen 558 EHYFIEDHDRLLSFSASEWKSVASVGVKPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAF 637 (1332)
T ss_pred cchhhcchHHHHhcCchhhHHHhhcccCCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhh
Confidence 345677777777664 32 235799999999999998888888877 9999999999999999999999999
Q ss_pred HHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccc
Q psy5417 82 ELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSL 161 (265)
Q Consensus 82 ~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 161 (265)
+||++++|+++||
T Consensus 638 ~laaFalqadsGN------------------------------------------------------------------- 650 (1332)
T KOG4371|consen 638 ELAAFALQADSGN------------------------------------------------------------------- 650 (1332)
T ss_pred hHHhhhhhhhcCC-------------------------------------------------------------------
Confidence 9999999977665
Q ss_pred cccCCCCCCCCCCCCccccccCccc------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeec---
Q psy5417 162 AELGDYDPRRHSPGYVSEFRFTSHQ------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLG--- 232 (265)
Q Consensus 162 ~~~gd~~~~~h~~~yl~~~~~~p~~------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~--- 232 (265)
+.++.+...|....+|+|.. +..+...+.+.|....|.+.++|...|+++++++|.|+++++++..
T Consensus 651 -----r~~n~~~gdysdP~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP 725 (1332)
T KOG4371|consen 651 -----RPPNPVIGDYSDPQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKP 725 (1332)
T ss_pred -----CCCCccccccCChhhhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCC
Confidence 33333444444444555553 3445577779999999999999999999999999999999888732
Q ss_pred --------CCCCEEEEEEeCCceEEeeCC----ceeeeeecCCCC
Q psy5417 233 --------EDSIEYFLGLTPAGIVVLRNK----IKVASYLWKESN 265 (265)
Q Consensus 233 --------~~~~~~~lGV~~~GI~v~~~~----~~~~~f~W~~i~ 265 (265)
..+.+.|+|.+++||.||.+. .+++.|+|.+|+
T Consensus 726 ~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~ 770 (1332)
T KOG4371|consen 726 TSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQ 770 (1332)
T ss_pred cccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCC
Confidence 245699999999999999864 478999999874
No 9
>KOG4261|consensus
Probab=99.53 E-value=1.1e-15 Score=153.77 Aligned_cols=166 Identities=19% Similarity=0.351 Sum_probs=137.0
Q ss_pred CcccccCCCccccccccccCCCceeeEEeeeccCCC-CCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhh
Q psy5417 12 NTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNP-PPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQC 90 (265)
Q Consensus 12 ~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~-p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qa 90 (265)
++.+|+|-.+.+..|.. .+.+++.+|-|||-.+ -.+-.|++..+|+|.|+|.+|+.|..|+..+.|+++|++..|+
T Consensus 168 ~el~wld~~rtlreqgi---de~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshi 244 (1003)
T KOG4261|consen 168 DELNWLDHSRTLREQGI---DEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHI 244 (1003)
T ss_pred hhhhhHHHhHHHHhcCc---cHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhcccccc
Confidence 56789999999999986 4577888887765444 4578999999999999999999999999999999999998874
Q ss_pred hcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCC
Q psy5417 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPR 170 (265)
Q Consensus 91 e~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 170 (265)
.+|++...
T Consensus 245 ------------------------------------------------------------------------q~g~~~~~ 252 (1003)
T KOG4261|consen 245 ------------------------------------------------------------------------QFGPHNED 252 (1003)
T ss_pred ------------------------------------------------------------------------ccCCchhh
Confidence 44555555
Q ss_pred CCCCCCccccccCccc---hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecC-----CCCEEEEEE
Q psy5417 171 RHSPGYVSEFRFTSHQ---SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGE-----DSIEYFLGL 242 (265)
Q Consensus 171 ~h~~~yl~~~~~~p~~---~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~-----~~~~~~lGV 242 (265)
.|. +++...+++|+. ... +.+|+..|+.+.||+..+|+.+|-+.|+.|++||+.+|-|+-+ .+.+.+|||
T Consensus 253 k~k-~~ld~kd~lpk~y~k~k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv 330 (1003)
T KOG4261|consen 253 KHK-GFLDLKDFLPKEYVKQKG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGV 330 (1003)
T ss_pred ccc-cchhccccChHHHhcccc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhh
Confidence 566 777777777775 333 8999999999999999999999999999999999999999864 347899999
Q ss_pred eCCceEEeeCCc
Q psy5417 243 TPAGIVVLRNKI 254 (265)
Q Consensus 243 ~~~GI~v~~~~~ 254 (265)
+-..+.-...+.
T Consensus 331 ~K~svmr~de~t 342 (1003)
T KOG4261|consen 331 TKESVMRVDEKT 342 (1003)
T ss_pred hHHhhhhcchhh
Confidence 887665554433
No 10
>KOG0248|consensus
Probab=99.21 E-value=7e-12 Score=125.62 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=126.0
Q ss_pred eEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhhcccccccccccccccCCCCcccccc
Q psy5417 37 FFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKH 116 (265)
Q Consensus 37 l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
+..+.++|.-.-..-.++..|-|+|-|.-+-|..||.|.+-+.+-.+|||.+|.++||......+
T Consensus 676 l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~--------------- 740 (936)
T KOG0248|consen 676 LSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSD--------------- 740 (936)
T ss_pred HHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchH---------------
Confidence 45555666544555678899999999999999999999999999999999999999985411110
Q ss_pred ccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCccchHHHHHHHHH
Q psy5417 117 LYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAE 196 (265)
Q Consensus 117 ~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~~~~l~~~I~e 196 (265)
..++ ..+..|.|. .|+.. ...+.|+.+|..
T Consensus 741 --------------------------------------q~l~---qv~~rFyP~----ryrdg-----a~~eqLR~~l~t 770 (936)
T KOG0248|consen 741 --------------------------------------QQFE---FISQRFYPS----KMLDV-----ACIKSLRLQINS 770 (936)
T ss_pred --------------------------------------HHHH---HHHHHhChh----hhhcc-----CCHHHHHHHHhh
Confidence 0011 122345543 33211 125678899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeec-----CCCCEEEEEEeCCceEEeeCC--ceeeeeecCCC
Q psy5417 197 LHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLG-----EDSIEYFLGLTPAGIVVLRNK--IKVASYLWKES 264 (265)
Q Consensus 197 ~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~-----~~~~~~~lGV~~~GI~v~~~~--~~~~~f~W~~i 264 (265)
.|..|+||++.|+...||.+|++||.||+.+|.++. +.+.=+||+|+.+|+++++.+ ..+.+|+|..+
T Consensus 771 ~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYsSl 845 (936)
T KOG0248|consen 771 NWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYSSL 845 (936)
T ss_pred hHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccceeEEEEeecccc
Confidence 999999999999999999999999999999999864 345689999999999999976 36788888754
No 11
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=99.09 E-value=1.6e-10 Score=89.58 Aligned_cols=44 Identities=39% Similarity=0.784 Sum_probs=42.1
Q ss_pred CCCceeeeeecCCCCEEEEEEeCCceEEeeCCceeeeeecCCCC
Q psy5417 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLWKESN 265 (265)
Q Consensus 222 ~YG~~~f~v~~~~~~~~~lGV~~~GI~v~~~~~~~~~f~W~~i~ 265 (265)
+||+++|+|+|++|.+++|||++.||.||+++.++..|+|++|.
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~~f~W~~I~ 44 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPINEFPWPEIR 44 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEEEEEcccce
Confidence 69999999999999999999999999999988899999999984
No 12
>KOG4371|consensus
Probab=99.08 E-value=9.9e-11 Score=121.44 Aligned_cols=239 Identities=12% Similarity=-0.029 Sum_probs=154.9
Q ss_pred CcccccCCCcccccccccc------------CCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccC--CH
Q psy5417 12 NTYGFETPSRSACKHLYKC------------CVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPV--SF 77 (265)
Q Consensus 12 ~~~~wl~~~~~l~kq~~k~------------~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~--~~ 77 (265)
.++.|+|+..++.|+..|. ..+-+.|+|||+||++++..|.++..|+.+|||+|.|+++-..|- ++
T Consensus 81 ~ey~f~dp~~k~skyg~k~~r~s~~h~ld~~~rp~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e 160 (1332)
T KOG4371|consen 81 EEYSFEDPFLKESKYGGKGSRLSQSHRLDETFRPELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPE 160 (1332)
T ss_pred ccccccChhhhhhhhcCCCCccccccccCccCCeeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCCcchH
Confidence 5789999999999986432 346799999999999999999999999999999999999876665 78
Q ss_pred HHHHHHhHHHhhhhccccccccccc--ccccCCC-CccccccccccccCCccccceeeccccccccccccccchhHHHHH
Q psy5417 78 ELSAELGAYVVQCKYKTLAVTDEEN--TYGFETP-SRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILA 154 (265)
Q Consensus 78 e~a~~Laal~~Qae~Gd~~~~~~~~--~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 154 (265)
+.+.++|+|++|++|||.+...... .++.++- .+... + +.-+.+++...+....++.+-+.|-..+
T Consensus 161 ~a~~~~a~lalq~d~g~~~~g~s~~~qy~g~~~~~~p~~~--------g---~g~s~~n~l~~~~~~~nE~~~~~~~~~~ 229 (1332)
T KOG4371|consen 161 KAAEEYARLALQNDFGEEEEGESQFGQYGGTLSGRDPFDE--------G---SGNSNENQLREKKLHKNEQLAHRLSSSS 229 (1332)
T ss_pred HHHHHHHhhhhcCccCcCCcccccccccCcceeccCcccc--------c---cccccccccHHHHHhhhHHHHHHHHHHH
Confidence 8999999999999999976443211 1111110 00000 0 0001122222233334444555555555
Q ss_pred hhhcccccccCCCCCCCCCCCCccccccCccc--hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcc-CCCCCceeeee-
Q psy5417 155 SCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--SAALESRVAELHRDLSGQTPSQAELNYLDRVKN-LPLYGVDLHPV- 230 (265)
Q Consensus 155 ~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~--~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG~~~f~v- 230 (265)
+...+....+..-.+. .+..|.+..++.+.. +++-..-+..+|+.+.|+-..++++.||+.|+. +..-.++.++-
T Consensus 230 ~e~~r~~i~l~~~l~~-~~~~~~~~~d~a~~g~~~~~~a~~~~~c~~~h~g~~~~e~~Ls~~~~A~~~~~~~~a~~~~s~ 308 (1332)
T KOG4371|consen 230 EEIVRASIHLDEPLVM-AQIPEEKPKDKAIPGFDNAYDADFDNSCPLHHYGAVHLETGLSPLEEAQRALRANRARHKPSN 308 (1332)
T ss_pred HHhcccccCCCCCccc-cCCccccCccccccccCchhhhhhhcCCCcccccchhhhccccHHHHHHHHHHhhhceecccc
Confidence 4443333333333321 234455555555543 455557778899999999999999999999987 44455554442
Q ss_pred --ecCCC-CEEEEEEeCCceEEeeCCc-------eeeeeecC
Q psy5417 231 --LGEDS-IEYFLGLTPAGIVVLRNKI-------KVASYLWK 262 (265)
Q Consensus 231 --~~~~~-~~~~lGV~~~GI~v~~~~~-------~~~~f~W~ 262 (265)
+.+.+ -..|..+...||.+...++ .+..|+|+
T Consensus 309 ~sk~e~~~~~a~~~~y~~~~~~~~~e~~~v~s~p~~t~~~~p 350 (1332)
T KOG4371|consen 309 VSKAEEAKLAARQRYYNASDIRREEEEEVVESDPAVTVPVLP 350 (1332)
T ss_pred cchhhhhhhhHHHHHHhHHHhhhcchheecccCccccccCCC
Confidence 22222 2467777777877776543 34688887
No 13
>KOG3552|consensus
Probab=98.59 E-value=7.6e-08 Score=99.61 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=103.9
Q ss_pred eeeEEeeeccCCCCCCc--cchhhHHHHHHHHHHHHhcCCccC--CHHHHHHHhHHHhhhhcccccccccccccccCCCC
Q psy5417 35 HSFFRLVQVSSNPPPDI--ISSRFRYQFFLQIKQDILQGRLPV--SFELSAELGAYVVQCKYKTLAVTDEENTYGFETPS 110 (265)
Q Consensus 35 ~~l~frVkfy~~~p~~l--~~~~tR~l~ylQ~r~dil~grlp~--~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~ 110 (265)
+.--|||-|-|.||.+| .|++...++|||...||.+.|+-. ..+.|..||||.+|
T Consensus 261 ~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~--------------------- 319 (1298)
T KOG3552|consen 261 LRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMH--------------------- 319 (1298)
T ss_pred eeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHH---------------------
Confidence 44579999999999765 799999999999999999999988 68899999999998
Q ss_pred ccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccc----cccCccc
Q psy5417 111 RSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSE----FRFTSHQ 186 (265)
Q Consensus 111 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~----~~~~p~~ 186 (265)
+|+| ++ ++.+ +-...|++. +.|+|..
T Consensus 320 ----~~~~---------------a~------------------------------~q~q-KislKyIEkewGlE~Fvp~s 349 (1298)
T KOG3552|consen 320 ----QHAL---------------AN------------------------------NQAQ-KISLKYIEKEWGLERFVPVS 349 (1298)
T ss_pred ----HHHH---------------hh------------------------------cccc-chhhhhhhhhhchhhcccHH
Confidence 3443 00 0111 112223332 3466664
Q ss_pred ------hHHHHHHHHHHHHhh--cC-----CCHHHHHHHHHHHhccCCCCCceeeeeecCCC---CEEEEEEeCC-ceEE
Q psy5417 187 ------SAALESRVAELHRDL--SG-----QTPSQAELNYLDRVKNLPLYGVDLHPVLGEDS---IEYFLGLTPA-GIVV 249 (265)
Q Consensus 187 ------~~~l~~~I~e~h~~l--~G-----~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~---~~~~lGV~~~-GI~v 249 (265)
..++++.|...-+.. .| ++.-+|++.||++..+|+.||...|.++-..| ..+.|=|+++ ||+-
T Consensus 350 ll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLVgpryGiSq 429 (1298)
T KOG3552|consen 350 LLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLLVGPRYGISQ 429 (1298)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEeccccchhH
Confidence 456666665443322 22 57789999999999999999999999976555 6777777776 6543
No 14
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=98.08 E-value=2.9e-06 Score=65.09 Aligned_cols=33 Identities=24% Similarity=0.661 Sum_probs=30.7
Q ss_pred cCCCCEEEEEEeCCceEEeeCCcee--eeeecCCC
Q psy5417 232 GEDSIEYFLGLTPAGIVVLRNKIKV--ASYLWKES 264 (265)
Q Consensus 232 ~~~~~~~~lGV~~~GI~v~~~~~~~--~~f~W~~i 264 (265)
|++|.++||||+++||.||+++.++ ..|+|++|
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I 35 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNRISTQFFPWSEI 35 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBSSSSEEEEGGGE
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCcccceeeehhhe
Confidence 5789999999999999999998887 99999987
No 15
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=97.99 E-value=7.5e-06 Score=61.01 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.8
Q ss_pred eeE-eeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccC
Q psy5417 2 IRV-CDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSS 45 (265)
Q Consensus 2 l~y-~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~ 45 (265)
|+| .+++ ++..||+++++|.+|+.+ ..++++|+|||||||
T Consensus 40 L~~~~~~~---~~~~wL~~~k~l~~q~~~-~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 40 LQYQVDKD---GEHHWLDLDKKLKKQLKK-NNPPFTLYFRVKFYP 80 (80)
T ss_dssp EEE-EBTT---SSEEEE-SSSBGGGSTBT-SSSSEEEEEEESS--
T ss_pred EEEeecCC---CcceeccCcccHHHHcCC-CCCCEEEEEEEEECC
Confidence 566 4555 478999999999999986 357999999999997
No 16
>KOG4257|consensus
Probab=97.56 E-value=0.00012 Score=74.77 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=116.4
Q ss_pred CceeeEEeeeccCCCCCCc--cchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHhHHHhhhhcccccccccccccccCCC
Q psy5417 33 DHHSFFRLVQVSSNPPPDI--ISSRFRYQFFLQIKQDILQGRLPV-SFELSAELGAYVVQCKYKTLAVTDEENTYGFETP 109 (265)
Q Consensus 33 ~~~~l~frVkfy~~~p~~l--~~~~tR~l~ylQ~r~dil~grlp~-~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~ 109 (265)
..|.+-+|++|.|++...+ .|..|..+||-|++.|..+..--. +.++|.+||+|-+--+|.+.+.-..
T Consensus 90 ~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~--------- 160 (974)
T KOG4257|consen 90 DEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAP--------- 160 (974)
T ss_pred hhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCC---------
Confidence 4789999999999988654 688889999999999999866544 8899999999988866665321110
Q ss_pred CccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCccc---
Q psy5417 110 SRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--- 186 (265)
Q Consensus 110 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~--- 186 (265)
.. +|.| -.++- ...+. .|+|++
T Consensus 161 ~k---ksh~-------------------------------e~lek------evglk---------------sffPksl~~ 185 (974)
T KOG4257|consen 161 GK---KSHL-------------------------------EDLEK------EVGLK---------------SFFPKSLHN 185 (974)
T ss_pred Cc---cccH-------------------------------HHHHH------HhhHH---------------hhChHhhhc
Confidence 00 0100 00000 01111 244443
Q ss_pred ---hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCC--CEEEEEEeCC-ceEEeeCC
Q psy5417 187 ---SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDS--IEYFLGLTPA-GIVVLRNK 253 (265)
Q Consensus 187 ---~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~--~~~~lGV~~~-GI~v~~~~ 253 (265)
...++..|..-++++...+++|....|+++-...-.+.++.|.+.-..| .++.|.|+|+ ||+-.-++
T Consensus 186 ~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~Gisy~t~~ 258 (974)
T KOG4257|consen 186 PFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHTGISYLTNE 258 (974)
T ss_pred ccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcccceeccCC
Confidence 5668899999999999999999999999999988889999999877655 7899999999 99876543
No 17
>KOG3531|consensus
Probab=97.48 E-value=2e-05 Score=81.54 Aligned_cols=176 Identities=7% Similarity=-0.187 Sum_probs=131.9
Q ss_pred ccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhhcc
Q psy5417 14 YGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYK 93 (265)
Q Consensus 14 ~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae~G 93 (265)
.-|+|.++..-.+..-. -.-.+|.+..|||..++..|....+|+.+|||..++..-|-+.|+.+.++.-+.+..|+=-|
T Consensus 230 h~a~D~Eg~~~~lav~h-mgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~ 308 (1036)
T KOG3531|consen 230 HPAKDREGTKINLAVAH-MGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKI 308 (1036)
T ss_pred chhhhcccchHHHHHHh-hhhHHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhc
Confidence 45999988877775422 23457889999999999999999999999999999999999999999999999988884322
Q ss_pred cccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCC-
Q psy5417 94 TLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRH- 172 (265)
Q Consensus 94 d~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h- 172 (265)
+ +-+...
T Consensus 309 c------------------------------------------------------------------------ve~h~ff 316 (1036)
T KOG3531|consen 309 C------------------------------------------------------------------------VEHHAFF 316 (1036)
T ss_pred c------------------------------------------------------------------------ccccchh
Confidence 1 111100
Q ss_pred CCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEEEeCCceEEeeC
Q psy5417 173 SPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRN 252 (265)
Q Consensus 173 ~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGV~~~GI~v~~~ 252 (265)
..-|+... ..|.+...--+.++.-||+..|+.+-.++...++.+.+-+.||++.+...+..+....+.+-+.|+.. ..
T Consensus 317 r~~~~~~~-k~k~~~~S~gssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~~~~-~s 394 (1036)
T KOG3531|consen 317 RLVEEPKP-KPKTVFFSKGSSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQHRN-GS 394 (1036)
T ss_pred hhhcccCC-CCCceeecccchhhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhhccccccc-cc
Confidence 01111111 22222222337799999999999999999999999999999999999999888888888888899887 32
Q ss_pred CceeeeeecCCC
Q psy5417 253 KIKVASYLWKES 264 (265)
Q Consensus 253 ~~~~~~f~W~~i 264 (265)
-...+.|-|.++
T Consensus 395 l~~~n~~~~~~~ 406 (1036)
T KOG3531|consen 395 LYEANGTDSYNK 406 (1036)
T ss_pred eeecccccCccc
Confidence 234566666554
No 18
>KOG3727|consensus
Probab=96.60 E-value=0.0018 Score=65.00 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCC-CCEEEEEEeCCceEEee
Q psy5417 187 SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGED-SIEYFLGLTPAGIVVLR 251 (265)
Q Consensus 187 ~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~-~~~~~lGV~~~GI~v~~ 251 (265)
...+..+|.|.|++.+.|+..||++.||+-=|+||.||+++|-|+=+. ...=.|||...-|.-..
T Consensus 516 sKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmD 581 (664)
T KOG3727|consen 516 SKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMD 581 (664)
T ss_pred hHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeee
Confidence 455889999999999999999999999999999999999999986432 23446777655444433
No 19
>KOG3527|consensus
Probab=96.48 E-value=0.00082 Score=70.11 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=132.5
Q ss_pred CCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhh
Q psy5417 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQC 90 (265)
Q Consensus 11 e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qa 90 (265)
++++.|..+.+.+.+++. ...+-+.+.+++++. |....+...|+.-+.+.|++.+++|.++..+....|++++++-
T Consensus 434 ~~~r~~~~ni~~~~s~L~---~eDrDke~E~r~k~q-~~~s~dk~a~ee~~kerrrrelEer~~Ae~~~h~~ltsf~A~n 509 (975)
T KOG3527|consen 434 EGTRVLGYNIKNIHSNLM---LEDRDKEQEVILKSQ-PSISEDKHAREEEVKERRRRELEERTPAELSLHERLTSFAADN 509 (975)
T ss_pred cceeeccccccccccccc---ccchhhhhhhhcccC-Ccchhhhhcchhhccccccccccccccchhhhhhhcccchhhh
Confidence 378889999888888885 456777888888875 5447778888889999999999999999999999999999998
Q ss_pred hcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCC
Q psy5417 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPR 170 (265)
Q Consensus 91 e~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 170 (265)
.+||.+....+.-..+..+.. ...|+|.+.
T Consensus 510 ~~g~~~~E~tdtkE~d~~sg~--------------------------------------------------rvi~~~h~~ 539 (975)
T KOG3527|consen 510 IFGDAPAETTDTKELDKVSGP--------------------------------------------------RVIRAYHSG 539 (975)
T ss_pred hccccchhhccccccccccCC--------------------------------------------------cccccccCc
Confidence 888754333210000000000 111222211
Q ss_pred CCCCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeee-ec--CCCCEEE-EEEeCCc
Q psy5417 171 RHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPV-LG--EDSIEYF-LGLTPAG 246 (265)
Q Consensus 171 ~h~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v-~~--~~~~~~~-lGV~~~G 246 (265)
.-...|..+++..+|.+.++++..+...+....+||.+.+.. .+ ..+.++. ..+...+
T Consensus 540 ------------------~~~~~i~~l~e~~rs~s~setee~~~~r~~~k~~~Gi~~~~~e~~~~k~~~~~d~~~~~ee~ 601 (975)
T KOG3527|consen 540 ------------------ETYKKIVNLSELMRSQSESETEEQFRDRCKHKALYGIHLFEAESDKDKEPEPVDRAEVGEED 601 (975)
T ss_pred ------------------ccccccccchhhhccccccchhhhhhcccccccccccchhhhhcccccCcccccchhccccc
Confidence 122457788999999999999999999999999999999975 33 2222222 2233999
Q ss_pred eEEeeCCceeeeeecCCCC
Q psy5417 247 IVVLRNKIKVASYLWKESN 265 (265)
Q Consensus 247 I~v~~~~~~~~~f~W~~i~ 265 (265)
|..|+.-.....|.|.+|.
T Consensus 602 ipeaEpv~~t~s~v~~ni~ 620 (975)
T KOG3527|consen 602 IPEAEPVQKTHSFVWQNII 620 (975)
T ss_pred ccccceecccccccccccc
Confidence 9999998888999998873
No 20
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=96.25 E-value=0.04 Score=42.47 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcc-CCCCC
Q psy5417 194 VAELHRDLSGQTPSQAELNYLDRVKN-LPLYG 224 (265)
Q Consensus 194 I~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG 224 (265)
--+.|+++.||++++|+..|++++.+ +|.||
T Consensus 54 K~~AW~~l~~ms~~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 54 KWDAWNSLKGMSKEDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhccC
Confidence 35689999999999999999999987 47776
No 21
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=95.62 E-value=0.051 Score=41.59 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcc
Q psy5417 194 VAELHRDLSGQTPSQAELNYLDRVKN 219 (265)
Q Consensus 194 I~e~h~~l~G~t~~~A~~~yL~~~~~ 219 (265)
=-+.|+++.|||+++|+..|++.+.+
T Consensus 56 K~~AW~~l~gms~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 56 KWDAWKALKGMSKEEAMREYIELVEE 81 (87)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999875
No 22
>PTZ00458 acyl CoA binding protein; Provisional
Probab=93.58 E-value=0.56 Score=36.72 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhccC-CCCC
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKNL-PLYG 224 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~l-~~YG 224 (265)
-+.|.++.||++++|+..|++++.++ |.|.
T Consensus 57 w~AW~~l~~ms~~eA~~~YI~l~~~l~~~w~ 87 (90)
T PTZ00458 57 YEAWKSIENLNREDAKKRYVEIVTELFPNWE 87 (90)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhccc
Confidence 46899999999999999999999885 5453
No 23
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=93.33 E-value=0.35 Score=37.00 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=25.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhccCCC-CC
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKNLPL-YG 224 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~l~~-YG 224 (265)
-+.|..|.|.|.++|..+||.++..|.. ||
T Consensus 56 ~eAW~~LKGksqedA~qeYialVeeLkak~~ 86 (87)
T COG4281 56 YEAWAGLKGKSQEDARQEYIALVEELKAKYG 86 (87)
T ss_pred HHHHhhccCccHHHHHHHHHHHHHHHHhhcC
Confidence 4578999999999999999999988754 54
No 24
>KOG3784|consensus
Probab=88.63 E-value=2.6 Score=41.28 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHhccCCCCCceeeee--e--cCCCCEEEEEEeCCceEEee--CC--ceeeeeecCCC
Q psy5417 210 ELNYLDRVKNLPLYGVDLHPV--L--GEDSIEYFLGLTPAGIVVLR--NK--IKVASYLWKES 264 (265)
Q Consensus 210 ~~~yL~~~~~l~~YG~~~f~v--~--~~~~~~~~lGV~~~GI~v~~--~~--~~~~~f~W~~i 264 (265)
+..||+.|+.+++||...|+- - .+.|..+.+-++.+-|..-- +. .....|-|..|
T Consensus 247 ~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trm 309 (407)
T KOG3784|consen 247 MKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRM 309 (407)
T ss_pred HHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeee
Confidence 445999999999999999984 2 36888888888888777653 11 35678888765
No 25
>KOG0817|consensus
Probab=83.03 E-value=4 Score=34.59 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCCceeeee
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYGVDLHPV 230 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG~~~f~v 230 (265)
-+.|..+.||+.++|+..|++.+.+ .|.||...=..
T Consensus 59 w~AW~~l~~~s~~eA~~~Yv~~~~~l~~~~~~~~~~~ 95 (142)
T KOG0817|consen 59 WQAWNSLGGMSKEEAMEAYVEKVEELIPKYGAEAETE 95 (142)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3459999999999999999999988 46688765443
No 26
>KOG4335|consensus
Probab=64.24 E-value=2 Score=43.32 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=42.2
Q ss_pred ceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhh
Q psy5417 34 HHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQ 89 (265)
Q Consensus 34 ~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Q 89 (265)
...+.+.|.|--.+-..+.|+..-+.+|--+|.++++|++.......+.+|...+|
T Consensus 327 ~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~ 382 (558)
T KOG4335|consen 327 GCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLE 382 (558)
T ss_pred chhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcc
Confidence 34455555433333346888888899999999999999999988888888877676
No 27
>KOG3878|consensus
Probab=40.27 E-value=55 Score=31.84 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcc
Q psy5417 194 VAELHRDLSGQTPSQAELNYLDRVKN 219 (265)
Q Consensus 194 I~e~h~~l~G~t~~~A~~~yL~~~~~ 219 (265)
....|+.|-.||.++|+..|.++.-+
T Consensus 91 r~~~W~~LG~~sre~AM~~FV~Lldr 116 (469)
T KOG3878|consen 91 RQQHWQLLGEISREQAMEGFVDLLDR 116 (469)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45688888889999999999776543
No 28
>KOG3727|consensus
Probab=39.30 E-value=5.2 Score=40.94 Aligned_cols=77 Identities=17% Similarity=0.051 Sum_probs=53.2
Q ss_pred cccccCCCccccccccccCCCceeeEEeeeccCC-CCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhh
Q psy5417 13 TYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSN-PPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCK 91 (265)
Q Consensus 13 ~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~-~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae 91 (265)
...|++-...+.+|..+. --++-+|.|||.- |-+..-+.+--+++|.|+|=+++...+-|+++.+..+||+.-|++
T Consensus 238 n~gwldSs~s~meq~~~e---~d~~~lrfk~~~ffdlnpkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~ 314 (664)
T KOG3727|consen 238 NVGWLDSSRSLMEQGIRE---YDTLLLRFKYFTFFDLNPKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVN 314 (664)
T ss_pred ccCCchhhhHHHHccchH---HHHHHHHHhhhhhhhcccccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 456888888888886532 1223334443321 111122344456799999999999999999999999999999976
Q ss_pred c
Q psy5417 92 Y 92 (265)
Q Consensus 92 ~ 92 (265)
+
T Consensus 315 ~ 315 (664)
T KOG3727|consen 315 H 315 (664)
T ss_pred H
Confidence 4
No 29
>KOG3530|consensus
Probab=32.20 E-value=22 Score=36.64 Aligned_cols=53 Identities=40% Similarity=0.691 Sum_probs=34.5
Q ss_pred CCcccccCCCccccccccccCCCceeeEEeeeccCCCCC----C-ccchhhHHHHHHHH
Q psy5417 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPP----D-IISSRFRYQFFLQI 64 (265)
Q Consensus 11 e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~----~-l~~~~tR~l~ylQ~ 64 (265)
+.|+.|--+..+.||++|||+++++. |||.+.=+.... + -..+.+||....+.
T Consensus 264 ~hTf~F~~~~~~AcKhLWKCavEhha-FFRl~~p~~~~s~~~~ffrlGSrfRysgrTe~ 321 (616)
T KOG3530|consen 264 EHTFVFRLPSPKACKHLWKCAVEHHA-FFRLRCPVSSQSARSDFFRLGSRFRYSGRTEY 321 (616)
T ss_pred cceEEEeCCCcchhHHHHHHhhhccc-eEeccCCccccccccchhhhcceeeecCchHH
Confidence 45888999999999999999877655 466543222221 1 24666776665443
No 30
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=30.49 E-value=78 Score=24.95 Aligned_cols=33 Identities=6% Similarity=0.200 Sum_probs=25.6
Q ss_pred cCCCCEEEEEEeCCceEEeeCCc--eeeeeecCCC
Q psy5417 232 GEDSIEYFLGLTPAGIVVLRNKI--KVASYLWKES 264 (265)
Q Consensus 232 ~~~~~~~~lGV~~~GI~v~~~~~--~~~~f~W~~i 264 (265)
.+.+.++.|-|++.||.+...+. .+..|+..+|
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~I 74 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRI 74 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCCeEEEEccccce
Confidence 34567899999999999997543 5677777766
No 31
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=28.45 E-value=83 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.3
Q ss_pred cCCCCEEEEEEeCCceEEeeCC--ceeeeeecCCC
Q psy5417 232 GEDSIEYFLGLTPAGIVVLRNK--IKVASYLWKES 264 (265)
Q Consensus 232 ~~~~~~~~lGV~~~GI~v~~~~--~~~~~f~W~~i 264 (265)
...+.+++|-|++.||.|...+ ..+..|+...|
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~I 72 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRI 72 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceE
Confidence 3567899999999999999865 35566666655
No 32
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=26.27 E-value=1.1e+02 Score=28.01 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhccCCC-CCceeee--------eecCCC-CEEEEEEeCCceEEeeCC
Q psy5417 192 SRVAELHRDLSGQTPSQAELNYLDRVKNLPL-YGVDLHP--------VLGEDS-IEYFLGLTPAGIVVLRNK 253 (265)
Q Consensus 192 ~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~-YG~~~f~--------v~~~~~-~~~~lGV~~~GI~v~~~~ 253 (265)
.-|.|.||.|+...|-.|. +.++.|++ |+--+|. +.|.+| .+++-||...|=.|+.++
T Consensus 105 ~~vIEAYrtLRDRgPyPad----qvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd 172 (228)
T PF12481_consen 105 MFVIEAYRTLRDRGPYPAD----QVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDD 172 (228)
T ss_pred hhHHHHHHHhhccCCCChH----HHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCC
Confidence 4589999999887777774 35777776 6555544 345555 589999999998888865
Done!