Query psy5417
Match_columns 265
No_of_seqs 123 out of 838
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 16:55:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qij_A Protein 4.1; cytoskelet 100.0 4E-44 1.4E-48 328.6 16.9 186 2-265 61-246 (296)
2 1ef1_A Moesin; membrane, FERM 100.0 6.3E-42 2.1E-46 311.1 19.6 187 2-264 44-242 (294)
3 1h4r_A Merlin; FERM, neurofibr 100.0 4.8E-41 1.6E-45 308.6 19.0 180 12-264 71-262 (314)
4 2i1j_A Moesin; FERM, coiled-co 100.0 6E-39 2E-43 318.8 19.1 187 2-264 47-245 (575)
5 3ivf_A Talin-1; FERM domain, c 100.0 1.2E-34 4.1E-39 272.1 19.5 178 12-265 140-328 (371)
6 1mix_A Talin; focal adhesion, 100.0 6.6E-35 2.3E-39 251.7 13.5 152 41-265 1-163 (206)
7 4dxa_B KREV interaction trappe 100.0 4.2E-32 1.4E-36 250.9 9.6 177 14-264 71-272 (322)
8 4f7g_A Talin-1; alpha-helix bu 100.0 1.3E-30 4.6E-35 229.0 14.7 142 52-265 24-174 (222)
9 2al6_A Focal adhesion kinase 1 100.0 7.8E-31 2.7E-35 247.5 12.0 197 2-265 55-270 (375)
10 3au4_A Myosin-X; protein-prote 100.0 2.4E-28 8.4E-33 240.3 18.6 192 13-264 268-496 (555)
11 3pvl_A Myosin VIIA isoform 1; 100.0 4.8E-29 1.6E-33 251.0 9.9 166 32-264 345-522 (655)
12 4eku_A Protein-tyrosine kinase 99.9 3.2E-25 1.1E-29 211.3 15.2 198 2-265 75-289 (392)
13 2j0j_A Focal adhesion kinase 1 99.9 1.9E-23 6.5E-28 208.8 11.2 197 2-264 55-269 (656)
14 1hbk_A ACBP, acyl-COA binding 95.8 0.073 2.5E-06 40.2 9.4 31 194-224 57-88 (89)
15 3epy_A Acyl-COA-binding domain 95.7 0.032 1.1E-06 42.4 7.1 31 195-225 58-89 (89)
16 2cb8_A Acyl-COA-binding protei 95.6 0.04 1.4E-06 41.6 7.1 30 195-224 56-86 (87)
17 1st7_A ACBP, acyl-COA-binding 95.5 0.059 2E-06 40.5 7.8 25 195-219 55-79 (86)
18 2lbb_A Acyl COA binding protei 95.1 0.063 2.2E-06 41.4 7.0 31 194-224 64-95 (96)
19 2cop_A Acyl-coenzyme A binding 94.9 0.19 6.5E-06 39.4 9.4 32 195-226 62-94 (109)
20 3flv_A Acyl-COA-binding domain 94.1 0.17 5.9E-06 40.4 7.5 30 195-224 82-112 (119)
21 2cqu_A Peroxisomal D3,D2-enoyl 94.1 0.38 1.3E-05 38.2 9.4 31 195-225 70-101 (116)
22 3fp5_A Acyl-COA binding protei 94.0 0.14 4.9E-06 40.0 6.9 25 195-219 62-86 (106)
23 2wh5_A Acyl-COA-binding domain 93.4 0.23 7.8E-06 38.8 7.0 26 195-220 66-91 (106)
24 2kc2_A Talin-1, F1; FERM, adhe 71.7 2.1 7.3E-05 34.4 2.5 33 12-47 95-127 (128)
25 1mij_A Protein prospero; homeo 22.3 44 0.0015 27.2 2.2 20 54-73 49-72 (152)
26 2lmd_A Prospero homeobox prote 20.1 48 0.0016 27.6 2.0 19 54-72 62-84 (174)
No 1
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=100.00 E-value=4e-44 Score=328.65 Aligned_cols=186 Identities=32% Similarity=0.607 Sum_probs=169.4
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSA 81 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~ 81 (265)
|.|.|.++ +.+||++++++++|+. ..++.|+|||||||++|..+.++.+|+++|+|+|+||++|++||+.++|+
T Consensus 61 L~~~~~~~---~~~wLd~~k~i~~q~~---~~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~ 134 (296)
T 3qij_A 61 LAIWDNAT---SKTWLDSAKEIKKQVR---GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLA 134 (296)
T ss_dssp EEEEEETT---EEEECCTTSBHHHHC------CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCHHHHH
T ss_pred EEEEcCCC---ccchhccchhHHHhcC---CCCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 56777654 7899999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccc
Q psy5417 82 ELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSL 161 (265)
Q Consensus 82 ~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 161 (265)
+||||++||++|
T Consensus 135 ~LAAl~~Qae~G-------------------------------------------------------------------- 146 (296)
T 3qij_A 135 LLGSYTIQSELG-------------------------------------------------------------------- 146 (296)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--------------------------------------------------------------------
Confidence 999999996655
Q ss_pred cccCCCCCCCCCCCCccccccCccchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEE
Q psy5417 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLG 241 (265)
Q Consensus 162 ~~~gd~~~~~h~~~yl~~~~~~p~~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lG 241 (265)
||++..|..+|+....++|.+.++|+++|.+.|+++.|||+.+|+.+||+.|++||+||+++|.|+++.|.++|||
T Consensus 147 ----d~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~Lg 222 (296)
T 3qij_A 147 ----DYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILG 222 (296)
T ss_dssp ----SCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEE
T ss_pred ----CCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEE
Confidence 4554445667888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCceEEeeCCceeeeeecCCCC
Q psy5417 242 LTPAGIVVLRNKIKVASYLWKESN 265 (265)
Q Consensus 242 V~~~GI~v~~~~~~~~~f~W~~i~ 265 (265)
|+++||.||+++.++..|+|++|.
T Consensus 223 V~~~Gi~v~~~~~kl~~f~w~~I~ 246 (296)
T 3qij_A 223 VCSSGLLVYKDKLRINRFPWPKVL 246 (296)
T ss_dssp ECSSEEEEEETTEEEEEEEGGGEE
T ss_pred ECCCeEEEEeCCCeEEEEEhhhcC
Confidence 999999999999999999999873
No 2
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=100.00 E-value=6.3e-42 Score=311.12 Aligned_cols=187 Identities=20% Similarity=0.362 Sum_probs=169.0
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCC-CccchhhHHHHHHHHHHHHhcCCccCCHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPP-DIISSRFRYQFFLQIKQDILQGRLPVSFELS 80 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~-~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a 80 (265)
|.|.+.++ +.+||++++++++|..+. ..++.|+|||||||++|. .+.++.+|+++|+|+|+||++|++||+.++|
T Consensus 44 L~~~~~~~---~~~wLd~~~~l~~q~~~~-~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a 119 (294)
T 1ef1_A 44 LQYQDTKG---FSTWLKLNKKVTAQDVRK-ESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETA 119 (294)
T ss_dssp EEEEBTTS---CEEECCSSSBGGGSCBCC-CSSEEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHH
T ss_pred EEEECCCC---ceeecccccCHHhhccCC-CCCEEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccCCHHHH
Confidence 56777654 778999999999996542 578999999999999987 7899999999999999999999999999999
Q ss_pred HHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhccc
Q psy5417 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKS 160 (265)
Q Consensus 81 ~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 160 (265)
++||||++|+
T Consensus 120 ~~Laal~~q~---------------------------------------------------------------------- 129 (294)
T 1ef1_A 120 VLLASYAVQS---------------------------------------------------------------------- 129 (294)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999999994
Q ss_pred ccccCCCCCCCCCCCCccccccCccc--------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeec
Q psy5417 161 LAELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLG 232 (265)
Q Consensus 161 ~~~~gd~~~~~h~~~yl~~~~~~p~~--------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~ 232 (265)
++|||++..|..+|++..+++|.+ .++|+++|.+.|+++.||++.+|+.+||+.|++||+||+++|+|++
T Consensus 130 --~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~ 207 (294)
T 1ef1_A 130 --KYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKN 207 (294)
T ss_dssp --HHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEC
T ss_pred --HhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEEeeec
Confidence 556677777788898888999986 4679999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeCCceEEeeCCce---eeeeecCCC
Q psy5417 233 EDSIEYFLGLTPAGIVVLRNKIK---VASYLWKES 264 (265)
Q Consensus 233 ~~~~~~~lGV~~~GI~v~~~~~~---~~~f~W~~i 264 (265)
++|.++||||+++||.||+.+.+ ...|+|++|
T Consensus 208 ~~g~~~~Lgv~~~Gi~v~~~~~k~~~~~~f~w~~I 242 (294)
T 1ef1_A 208 KKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEI 242 (294)
T ss_dssp TTCCEEEEEEETTEEEEEETTCSSSCSEEEEGGGE
T ss_pred CCCCEEEEEEecCcEEEEeCCCccccceEEEcccc
Confidence 99999999999999999997654 469999987
No 3
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=100.00 E-value=4.8e-41 Score=308.59 Aligned_cols=180 Identities=23% Similarity=0.446 Sum_probs=164.9
Q ss_pred CcccccCCCccccccccccCCCceeeEEeeeccCCCCC-CccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhh
Q psy5417 12 NTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPP-DIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQC 90 (265)
Q Consensus 12 ~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~-~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qa 90 (265)
++.+||++++++++|..+. ..++.|+|||||||++|. .+.++.+||++|+|+|+||++|++||+.++|++||||++||
T Consensus 71 ~~~~wL~~~~~i~~q~~~~-~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa 149 (314)
T 1h4r_A 71 DTVAWLKMDKKVLDHDVSK-EEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQA 149 (314)
T ss_dssp TEEEECCTTSBGGGSSCCC-SSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CcCeeCCCccCHHHcCCCC-CCCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 4788999999999997543 478999999999999886 78999999999999999999999999999999999999994
Q ss_pred hcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCC
Q psy5417 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPR 170 (265)
Q Consensus 91 e~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 170 (265)
++|||++.
T Consensus 150 ------------------------------------------------------------------------~~Gd~~~~ 157 (314)
T 1h4r_A 150 ------------------------------------------------------------------------KYGDYDPS 157 (314)
T ss_dssp ------------------------------------------------------------------------HHCSCCTT
T ss_pred ------------------------------------------------------------------------HHCCCCcc
Confidence 55667777
Q ss_pred CCCCCCccccccCccc--------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCCCCEEEEEE
Q psy5417 171 RHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGL 242 (265)
Q Consensus 171 ~h~~~yl~~~~~~p~~--------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGV 242 (265)
.|..+|++..+|+|.+ .+.|+++|.+.|+++.||++.+|+.+||+.|++||+||+++|.|++++|.++||||
T Consensus 158 ~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI 237 (314)
T 1h4r_A 158 VHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGV 237 (314)
T ss_dssp TSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEE
T ss_pred ccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEE
Confidence 7888888888999986 46899999999999999999999999999999999999999999999999999999
Q ss_pred eCCceEEeeCCce---eeeeecCCC
Q psy5417 243 TPAGIVVLRNKIK---VASYLWKES 264 (265)
Q Consensus 243 ~~~GI~v~~~~~~---~~~f~W~~i 264 (265)
+++||.||+.+.+ ...|+|++|
T Consensus 238 ~~~Gi~v~~~~~k~~~~~~f~w~~I 262 (314)
T 1h4r_A 238 DALGLHIYDPENRLTPKISFPWNEI 262 (314)
T ss_dssp CSSEEEEECTTCSSSCSEEEEGGGE
T ss_pred eCCceEEEeCCCCcccceEEecccc
Confidence 9999999997654 479999987
No 4
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=6e-39 Score=318.80 Aligned_cols=187 Identities=21% Similarity=0.365 Sum_probs=169.7
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccCCCceeeEEeeeccCCCCC-CccchhhHHHHHHHHHHHHhcCCccCCHHHH
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPP-DIISSRFRYQFFLQIKQDILQGRLPVSFELS 80 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~-~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a 80 (265)
|.|.|.++ ..+||++++++++|..+. ..++.|+|||||||++|. .+.++++|+|||+|+|+||++|++||+.+++
T Consensus 47 L~~~d~~~---~~~WLd~~k~i~~q~~~~-~~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c~~e~a 122 (575)
T 2i1j_A 47 LQYTDSKG---DLTWIKLYKKVMQQDVKK-ENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETS 122 (575)
T ss_dssp EEEEBTTS---CEEECCTTSBGGGSCBCC-CSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHH
T ss_pred EEEEecCc---chhHhhccccHHHhcccC-CCCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 56777654 788999999999996543 578999999999999987 7899999999999999999999999999999
Q ss_pred HHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhccc
Q psy5417 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKS 160 (265)
Q Consensus 81 ~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 160 (265)
+.||||++|+
T Consensus 123 ~~LAAL~lQa---------------------------------------------------------------------- 132 (575)
T 2i1j_A 123 VLLASYAVQA---------------------------------------------------------------------- 132 (575)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999999994
Q ss_pred ccccCCCCCCCCCCCCccccccCccc--------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeec
Q psy5417 161 LAELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLG 232 (265)
Q Consensus 161 ~~~~gd~~~~~h~~~yl~~~~~~p~~--------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~ 232 (265)
++|||++..|..+|+....|+|.+ .+.|+..|.+.|+++.||++.+|+.+||+.|++||+||+++|+|++
T Consensus 133 --e~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd 210 (575)
T 2i1j_A 133 --RHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRN 210 (575)
T ss_dssp --HHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEC
T ss_pred --HhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCCEEEEEEe
Confidence 566777777888899888999985 4679999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeCCceEEeeCCce---eeeeecCCC
Q psy5417 233 EDSIEYFLGLTPAGIVVLRNKIK---VASYLWKES 264 (265)
Q Consensus 233 ~~~~~~~lGV~~~GI~v~~~~~~---~~~f~W~~i 264 (265)
++|.++||||++.||.||+.+.+ ...|+|++|
T Consensus 211 ~~g~~l~LGV~~~GI~v~~~~~k~~~l~~f~w~~I 245 (575)
T 2i1j_A 211 KKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEI 245 (575)
T ss_dssp TTCCEEEEEECSSEEEEEETTCSSSCSEEEEGGGE
T ss_pred cCCCEEEEEEcCCeeEEEeCCCCcccceEecHHHh
Confidence 99999999999999999997654 469999987
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=100.00 E-value=1.2e-34 Score=272.14 Aligned_cols=178 Identities=17% Similarity=0.320 Sum_probs=152.1
Q ss_pred CcccccCCCccccccccccCCCceeeEEeeeccCCCCCC-ccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhh
Q psy5417 12 NTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPD-IISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQC 90 (265)
Q Consensus 12 ~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~p~~-l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qa 90 (265)
+...||++++++.+|.. ..++.|+||||||++++.. +.|+.+|+++|+|+|+||++|++||+.++|+.||||++|+
T Consensus 140 ~~~~wL~~~k~l~~q~~---~~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qa 216 (371)
T 3ivf_A 140 DELNWLDHGRTLREQGV---EEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQI 216 (371)
T ss_dssp ----CCCTTSBTGGGTC---CTTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCchhHhhCC---CCCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeecCHHHHHHHHHHHHHH
Confidence 47789999999999975 3578899999999988764 5899999999999999999999999999999999999995
Q ss_pred hcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCC
Q psy5417 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPR 170 (265)
Q Consensus 91 e~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 170 (265)
+ +|||++.
T Consensus 217 e------------------------------------------------------------------------~Gd~~~~ 224 (371)
T 3ivf_A 217 Q------------------------------------------------------------------------FGPHNEQ 224 (371)
T ss_dssp H------------------------------------------------------------------------HCSCCTT
T ss_pred H------------------------------------------------------------------------hCCCChh
Confidence 5 4556666
Q ss_pred CCCCCCccccccCccc---hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCC-C----CEEEEEE
Q psy5417 171 RHSPGYVSEFRFTSHQ---SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGED-S----IEYFLGL 242 (265)
Q Consensus 171 ~h~~~yl~~~~~~p~~---~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~-~----~~~~lGV 242 (265)
.|..+|+...+|+|.+ +.. ++.|.+.|+++.|+++.+|+.+||+.|++||+||+++|.|+++. | .++||||
T Consensus 225 ~~~~~~~~l~~~lP~~~~~~~~-e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI 303 (371)
T 3ivf_A 225 KHKAGFLDLKDFLPKEYVKQKG-ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGI 303 (371)
T ss_dssp TSCTTCSCGGGTSCGGGTTSCH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEE
T ss_pred hcccchhcccccCCHHHhCchH-HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEE
Confidence 6667777777889986 333 78999999999999999999999999999999999999998642 3 3799999
Q ss_pred eCCceEEeeCCc--eeeeeecCCCC
Q psy5417 243 TPAGIVVLRNKI--KVASYLWKESN 265 (265)
Q Consensus 243 ~~~GI~v~~~~~--~~~~f~W~~i~ 265 (265)
+++||.||+.+. .+..|+|.+|.
T Consensus 304 ~~~GI~v~~~~~k~~l~~~~~~~I~ 328 (371)
T 3ivf_A 304 TKECVMRVDEKTKEVIQEWSLTNIK 328 (371)
T ss_dssp CSSEEEEEETTTCCEEEEEEGGGCC
T ss_pred cCCcEEEEcCCCCceEEeeehhhee
Confidence 999999999765 46799999884
No 6
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=100.00 E-value=6.6e-35 Score=251.69 Aligned_cols=152 Identities=21% Similarity=0.402 Sum_probs=136.1
Q ss_pred eeccCCCCC-CccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccc
Q psy5417 41 VQVSSNPPP-DIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYK 119 (265)
Q Consensus 41 Vkfy~~~p~-~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~ 119 (265)
||||+++|. .+.|+.+|+++|+|+|+||++|++||+.+++++||||++||
T Consensus 1 vkf~~~d~~~~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa----------------------------- 51 (206)
T 1mix_A 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQI----------------------------- 51 (206)
T ss_dssp CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH-----------------------------
T ss_pred CcccCCCCCCCcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhh-----------------------------
Confidence 899999886 68899999999999999999999999999999999999995
Q ss_pred cccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCccc---hHHHHHHHHH
Q psy5417 120 CCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ---SAALESRVAE 196 (265)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~---~~~l~~~I~e 196 (265)
++|||++..|..+|++..+++|.+ ... +++|.+
T Consensus 52 -------------------------------------------~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~-~~~i~~ 87 (206)
T 1mix_A 52 -------------------------------------------QFGPHNEQKHKPGFLELKDFLPKEYIKQKG-ERKIFM 87 (206)
T ss_dssp -------------------------------------------HHCSCCTTTSCTTCSCGGGTSCGGGSTTCC-HHHHHH
T ss_pred -------------------------------------------eecCCCcccccCCccchHhhCCHHHhhccc-HHHHHH
Confidence 556677767778888888899987 222 889999
Q ss_pred HHHhhcCCCHHHHHHHHHHHhccCCCCCceeeeeecCC-C----CEEEEEEeCCceEEeeCCce--eeeeecCCCC
Q psy5417 197 LHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGED-S----IEYFLGLTPAGIVVLRNKIK--VASYLWKESN 265 (265)
Q Consensus 197 ~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f~v~~~~-~----~~~~lGV~~~GI~v~~~~~~--~~~f~W~~i~ 265 (265)
.|+++.||++.+|+.+||+.|++||+||+++|.|++.+ | .++||||+++||.+|+.+.+ +..|+|++|.
T Consensus 88 ~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~~~I~ 163 (206)
T 1mix_A 88 AHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIK 163 (206)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCC
T ss_pred HHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeehhHee
Confidence 99999999999999999999999999999999999875 5 69999999999999997654 5799999884
No 7
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=99.97 E-value=4.2e-32 Score=250.89 Aligned_cols=177 Identities=14% Similarity=0.198 Sum_probs=137.3
Q ss_pred ccccCCCccccccccccCCCceeeEEeeeccCC-CC-CCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhh
Q psy5417 14 YGFETPSRSACKHLYKCCVDHHSFFRLVQVSSN-PP-PDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCK 91 (265)
Q Consensus 14 ~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~-~p-~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae 91 (265)
..|.++.+++.++... ...+ .|+||++||.+ ++ ..+.|+.+|+++|+|+|+||++|++||+.+++++||||++||+
T Consensus 71 ~~W~~~l~~~~~~~~~-~~~p-~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e 148 (322)
T 4dxa_B 71 RDWPEILAELTNLDPQ-RETP-QLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIV 148 (322)
T ss_dssp HTHHHHHHHHCSCCCC-CCCC-EEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC-CCce-EEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHHHHHHH
Confidence 4688888888877432 2334 67777666553 44 4689999999999999999999999999999999999999976
Q ss_pred cccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCC
Q psy5417 92 YKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRR 171 (265)
Q Consensus 92 ~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 171 (265)
+|| |++..
T Consensus 149 ~Gd------------------------------------------------------------------------~~~~~ 156 (322)
T 4dxa_B 149 YGN------------------------------------------------------------------------YESKK 156 (322)
T ss_dssp HCS------------------------------------------------------------------------CCHHH
T ss_pred hCC------------------------------------------------------------------------CCccc
Confidence 665 43333
Q ss_pred CCCCCccc---cccCccc-----hHHHHHHHHHHHHhh---cCCCHH--HHHHHHHHHhccCCCCCceeeeeec------
Q psy5417 172 HSPGYVSE---FRFTSHQ-----SAALESRVAELHRDL---SGQTPS--QAELNYLDRVKNLPLYGVDLHPVLG------ 232 (265)
Q Consensus 172 h~~~yl~~---~~~~p~~-----~~~l~~~I~e~h~~l---~G~t~~--~A~~~yL~~~~~l~~YG~~~f~v~~------ 232 (265)
|..+|+++ ..|+|.+ .++|+++|.+.|+++ .||+++ +|+.+||+.|++||+||+++|.|+.
T Consensus 157 ~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g 236 (322)
T 4dxa_B 157 HKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASP 236 (322)
T ss_dssp HSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC---
T ss_pred ccccccchhhhhhhCCHHHHhcCHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCC
Confidence 44445441 3456654 456889999999999 999975 4699999999999999999999984
Q ss_pred --CCCCEEEEEEeCCceEEeeCCc--eeeeeecCCC
Q psy5417 233 --EDSIEYFLGLTPAGIVVLRNKI--KVASYLWKES 264 (265)
Q Consensus 233 --~~~~~~~lGV~~~GI~v~~~~~--~~~~f~W~~i 264 (265)
..+.++||||+.+||.||+.+. .+.+++|++|
T Consensus 237 ~~~~~~~~~LgV~~~Gv~v~~~~tk~~l~~~~~~~i 272 (322)
T 4dxa_B 237 SNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCF 272 (322)
T ss_dssp ----EEEEEEEECSSEEEEEETTTCCEEEEEETTSE
T ss_pred CccCCCeEEEEEccCceEEEcCCCceeeecccccee
Confidence 2346999999999999999764 4566666654
No 8
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=99.97 E-value=1.3e-30 Score=228.99 Aligned_cols=142 Identities=20% Similarity=0.389 Sum_probs=124.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCccCCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCcccccee
Q psy5417 52 ISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMIT 131 (265)
Q Consensus 52 ~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 131 (265)
.|+.+++++|+|+|+||++|++||+.++|++||||++||
T Consensus 24 ~Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qa----------------------------------------- 62 (222)
T 4f7g_A 24 RDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQI----------------------------------------- 62 (222)
T ss_dssp --CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHH-----------------------------------------
Confidence 366799999999999999999999999999999999995
Q ss_pred eccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCccc--hHHHHHHHHHHHHhhcCCCHHHH
Q psy5417 132 TYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--SAALESRVAELHRDLSGQTPSQA 209 (265)
Q Consensus 132 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~--~~~l~~~I~e~h~~l~G~t~~~A 209 (265)
++|||++..|..+|+....|+|.+ ...++++|.+.|+++.|+++.+|
T Consensus 63 -------------------------------e~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~~~~g~s~~eA 111 (222)
T 4f7g_A 63 -------------------------------QFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEA 111 (222)
T ss_dssp -------------------------------HHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHHTTTTCCHHHH
T ss_pred -------------------------------HHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHHhccCCCHHHH
Confidence 456666666777788888899997 55668899999999999999999
Q ss_pred HHHHHHHhccCCCCCceeeeeecCC-C----CEEEEEEeCCceEEeeCCc--eeeeeecCCCC
Q psy5417 210 ELNYLDRVKNLPLYGVDLHPVLGED-S----IEYFLGLTPAGIVVLRNKI--KVASYLWKESN 265 (265)
Q Consensus 210 ~~~yL~~~~~l~~YG~~~f~v~~~~-~----~~~~lGV~~~GI~v~~~~~--~~~~f~W~~i~ 265 (265)
+.+||+.|++||+||+++|.|+++. | .++||||+++||.||+.+. .+..|+|.+|.
T Consensus 112 ~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~ 174 (222)
T 4f7g_A 112 KVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIK 174 (222)
T ss_dssp HHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCC
T ss_pred HHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHee
Confidence 9999999999999999999998864 4 4899999999999999764 46788998884
No 9
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.97 E-value=7.8e-31 Score=247.54 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=152.0
Q ss_pred eeEeeCCCCCCcccccCCCcccccccccc----CCCceeeEEeeeccCCCCCCc--cchhhHHHHHHHHHHHHhcCC-cc
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKC----CVDHHSFFRLVQVSSNPPPDI--ISSRFRYQFFLQIKQDILQGR-LP 74 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~----~~~~~~l~frVkfy~~~p~~l--~~~~tR~l~ylQ~r~dil~gr-lp 74 (265)
|++.+.++ ++..||++++++++++.+. ...++.|.|||||||+++..+ .|+.+++++|+|+|+|+++|+ +|
T Consensus 55 L~~~~~~~--~~~~wL~~~~~l~~~~~k~~~~~~~~~~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~ 132 (375)
T 2al6_A 55 LRLSHLQS--EEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQ 132 (375)
T ss_dssp EEEEETTS--SCEEEECTTSBHHHHHHHHHTTSCGGGEEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEcCC--CceEeeCCccchhhhhhhhhcccCCCceEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCcc
Confidence 55655432 4678999999999887432 235899999999999998644 577899999999999999999 78
Q ss_pred CCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHH
Q psy5417 75 VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILA 154 (265)
Q Consensus 75 ~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 154 (265)
|+.++|+.||||++|+++||.+....+ + ..++
T Consensus 133 ~~~e~al~LAaL~~q~~~gD~~~~~~~-----------------------------------~--------k~~~----- 164 (375)
T 2al6_A 133 VDQEIALKLGCLEIRRSYGEMRGNALE-----------------------------------K--------KSNY----- 164 (375)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCTTGGG-----------------------------------S--------HHHH-----
T ss_pred CCHHHHHHHHHHHHHHHhhhccchhhc-----------------------------------c--------cCCH-----
Confidence 999999999999999999986421000 0 0000
Q ss_pred hhhcccccccCCCCCCCCCCCCccccccCccc------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceee
Q psy5417 155 SCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLH 228 (265)
Q Consensus 155 ~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f 228 (265)
. +. ..++....|+|.+ ...++++|...|+++.|+++.+|+.+||+.+++||+||+++|
T Consensus 165 -------~----~l-----~k~~~l~~flP~~~~~~~~~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F 228 (375)
T 2al6_A 165 -------E----VL-----EKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECF 228 (375)
T ss_dssp -------H----HH-----HHTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEE
T ss_pred -------H----Hh-----hhcccHHHhCCHHHHHHhChHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEE
Confidence 0 00 0011123577775 467899999999999999999999999999999999999999
Q ss_pred eeecCCC----CEEEEEEeCCceEEeeCC--ceeeeeecCCCC
Q psy5417 229 PVLGEDS----IEYFLGLTPAGIVVLRNK--IKVASYLWKESN 265 (265)
Q Consensus 229 ~v~~~~~----~~~~lGV~~~GI~v~~~~--~~~~~f~W~~i~ 265 (265)
.|++.+| ..++||++ .||.++.++ .....|.|++|.
T Consensus 229 ~v~~~~~~~~~~~l~lg~~-~GI~~~~~~~~~~~~~~~f~~I~ 270 (375)
T 2al6_A 229 KCALGSSWIISVELAIGPE-EGISYLTDKGANPTHLADFNQVQ 270 (375)
T ss_dssp EEEECSSSCEEEEEEEETT-TEEEEESSTTSCEEEEECGGGEE
T ss_pred EEeecCCCCcceEEEEecC-CCEEEEeCCCCceEEEechhHcc
Confidence 9998765 46777775 499999764 456789998873
No 10
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.96 E-value=2.4e-28 Score=240.29 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=145.8
Q ss_pred cccccCCCccccccccc---------cCCCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHHHHHHH
Q psy5417 13 TYGFETPSRSACKHLYK---------CCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAEL 83 (265)
Q Consensus 13 ~~~wl~~~~~l~kq~~k---------~~~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e~a~~L 83 (265)
...||++++.+.+.+.+ ....++.|+||++||++....+.|+.+++++|+|+|+||++|++||+.++++.|
T Consensus 268 ~~~~L~~~~~i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~~~~~~~~d~~~~~lly~Q~~~dil~G~~~~~~e~a~~L 347 (555)
T 3au4_A 268 VDKAIESRTVVADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVL 347 (555)
T ss_dssp CEEECCTTSBHHHHHHHHHHHTTSCCTTCCCCEEEEEEEECSCCTTCCTTSHHHHHHHHHHHHHHHTTCSCCCHHHHHHH
T ss_pred eeEecCCCCchhHHHHHHHHHhhccCCCCCceEEEEEEEeecCcccCCcchHHHHhhHHHHHHHHHCCCCCCCHHHHHHH
Confidence 44689999887764321 123589999999999863345678899999999999999999999999999999
Q ss_pred hHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccc
Q psy5417 84 GAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAE 163 (265)
Q Consensus 84 aal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 163 (265)
|||++|+++||....... ..
T Consensus 348 AAl~lQ~~~GD~~~~~~~------------------------------------------------------------~~ 367 (555)
T 3au4_A 348 AALRLQYLQGDYTLHAAI------------------------------------------------------------PP 367 (555)
T ss_dssp HHHHHHHHHCSCCTTCCC------------------------------------------------------------CC
T ss_pred HHHHHHHHcCCCccccch------------------------------------------------------------hh
Confidence 999999999986532100 01
Q ss_pred cCCCCCCC--------------CCCCCccccccCccc---------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccC
Q psy5417 164 LGDYDPRR--------------HSPGYVSEFRFTSHQ---------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNL 220 (265)
Q Consensus 164 ~gd~~~~~--------------h~~~yl~~~~~~p~~---------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l 220 (265)
+..|.|.. ...+-+...++.|.+ ...++++|.+.|+++.||++.+|+.+||+.|++|
T Consensus 368 l~~~lP~~~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~l 447 (555)
T 3au4_A 368 LEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEW 447 (555)
T ss_dssp GGGTSCCHHHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTS
T ss_pred hhhhCCHHHhhhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 11122210 000001111222222 3456899999999999999999999999999999
Q ss_pred CCCCceeeeeecCCC---CEEEEEEeCCceEEeeCCc--eeeeeecCCC
Q psy5417 221 PLYGVDLHPVLGEDS---IEYFLGLTPAGIVVLRNKI--KVASYLWKES 264 (265)
Q Consensus 221 ~~YG~~~f~v~~~~~---~~~~lGV~~~GI~v~~~~~--~~~~f~W~~i 264 (265)
|+||+++|.|++++| ..+||||++.||.||+.+. .+..|+|++|
T Consensus 448 p~yG~~~F~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I 496 (555)
T 3au4_A 448 PGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHI 496 (555)
T ss_dssp TTTTCEEEEEEEEESSSCSEEEEEECSSEEEEEETTCSSCSEEEEGGGE
T ss_pred CCcCceEEEEEecCCCCCceEEEEEcccceEEECCCCCeeEEEEEhhhe
Confidence 999999999998765 6999999999999999765 4579999987
No 11
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.95 E-value=4.8e-29 Score=250.98 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=135.9
Q ss_pred CCceeeEEeeeccCCCCCCccchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHhHHHhhhhcccccccccccccccCCCC
Q psy5417 32 VDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFE-LSAELGAYVVQCKYKTLAVTDEENTYGFETPS 110 (265)
Q Consensus 32 ~~~~~l~frVkfy~~~p~~l~~~~tR~l~ylQ~r~dil~grlp~~~e-~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~ 110 (265)
..++.|+||||||++.+..+.++++++|+|+|+|+||++|++||+.+ +++.||||++|+++||+....
T Consensus 345 ~~~~~L~FRvkff~p~~~~~~d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl~~Qae~Gd~~~~~----------- 413 (655)
T 3pvl_A 345 NAPWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILE----------- 413 (655)
T ss_dssp GCCCEEEEEECCCCTTCCGGGCHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHTTCCCHH-----------
T ss_pred CCCeEEEEEEEEecCCcccccCHHHHHHHHHHHhcccccCccCCChHHHHHHHHHHHHHHHhCCCcchh-----------
Confidence 46899999999999866778999999999999999999999999855 999999999999999863110
Q ss_pred ccccccccccccCCccccceeeccccccccccccccchhHHHHHhhhcccccccCCCCCCCCCCCCccccccCccchHHH
Q psy5417 111 RSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAAL 190 (265)
Q Consensus 111 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~~~~l 190 (265)
+++ ..+.+|.|.. ++... ...++|
T Consensus 414 -----~~~-------------------------------------------~~L~~~lP~~----~l~~~----~~~~~w 437 (655)
T 3pvl_A 414 -----RLL-------------------------------------------SLVPTYIPDR----EITPL----KNLEKW 437 (655)
T ss_dssp -----HHH-------------------------------------------HHHHHHSCGG----GCCSS----SCHHHH
T ss_pred -----hHH-------------------------------------------HHHHHhCCHH----HHhcc----CCHHHH
Confidence 000 1122244421 11100 136789
Q ss_pred HHHHHHHHHhh----cCCCHHHHHHHHHHHh-ccCCCCCceeeeeecCCC-----CEEEEEEeCCceEEeeCCce-eeee
Q psy5417 191 ESRVAELHRDL----SGQTPSQAELNYLDRV-KNLPLYGVDLHPVLGEDS-----IEYFLGLTPAGIVVLRNKIK-VASY 259 (265)
Q Consensus 191 ~~~I~e~h~~l----~G~t~~~A~~~yL~~~-~~l~~YG~~~f~v~~~~~-----~~~~lGV~~~GI~v~~~~~~-~~~f 259 (265)
++.|.++|+++ .|+++.+|+.+||+.| ++||+||+++|.|++..| .++||||+..||.||+.+.+ +..|
T Consensus 438 ~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV~v~d~~~k~ll~f 517 (655)
T 3pvl_A 438 AQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLEL 517 (655)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCceEEEcCCCceEEEe
Confidence 99999999999 9999999999999999 899999999999998777 58999999999999998765 4689
Q ss_pred ecCCC
Q psy5417 260 LWKES 264 (265)
Q Consensus 260 ~W~~i 264 (265)
+|++|
T Consensus 518 ~~~eI 522 (655)
T 3pvl_A 518 SFPEI 522 (655)
T ss_dssp EGGGE
T ss_pred chhHc
Confidence 99987
No 12
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=211.26 Aligned_cols=198 Identities=12% Similarity=0.103 Sum_probs=151.1
Q ss_pred eeEeeCCCCCCcccccCCCccccccccccC----CCceeeEEeeeccCCCCCCc--cchhhHHHHHHHHHHHHhcCC-cc
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYKCC----VDHHSFFRLVQVSSNPPPDI--ISSRFRYQFFLQIKQDILQGR-LP 74 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k~~----~~~~~l~frVkfy~~~p~~l--~~~~tR~l~ylQ~r~dil~gr-lp 74 (265)
|++...++ +..+||+++++++++..|.. ...+.|.|||||||.++..+ .|+.+.+++|+|+|+|+++|. .+
T Consensus 75 L~~~~~~~--~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~ 152 (392)
T 4eku_A 75 LRLKHMKS--DEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASK 152 (392)
T ss_dssp EEEEESSS--CCEEEECTTSBHHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEECCC--CceEECCCCCcHHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCC
Confidence 45544332 46789999999999975431 24789999999999998665 467777899999999999998 78
Q ss_pred CCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHH
Q psy5417 75 VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILA 154 (265)
Q Consensus 75 ~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 154 (265)
|+.++|+.||||.+|+++||.+....+ + ..++..++
T Consensus 153 ~~~e~al~LAaL~~q~~~gd~~~~a~~-----------------------------------~--------k~~~~~l~- 188 (392)
T 4eku_A 153 VSEGMALQLGCLELRRFFKDMPHNALD-----------------------------------K--------KSNFELLE- 188 (392)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCTTGGG-----------------------------------S--------HHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHhhhcchhhhc-----------------------------------c--------CCCHHHHh-
Confidence 999999999999999999986522100 0 00000000
Q ss_pred hhhcccccccCCCCCCCCCCCCccccccCccc------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceee
Q psy5417 155 SCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ------SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLH 228 (265)
Q Consensus 155 ~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~~------~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f 228 (265)
.++....|+|.+ ...++.+|...|+++.|+++.+|+.+||+.+++||+||+++|
T Consensus 189 --------------------k~~~lk~flP~~l~~~ik~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F 248 (392)
T 4eku_A 189 --------------------KEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETY 248 (392)
T ss_dssp --------------------HHTCGGGTSCHHHHHHSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEE
T ss_pred --------------------hhccHHHhcCHHHHhhcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEE
Confidence 011123466663 567899999999999999999999999999999999999999
Q ss_pred eeecCCC--CEEEEEEeCCceEEeeCCc--eeeeeecCCCC
Q psy5417 229 PVLGEDS--IEYFLGLTPAGIVVLRNKI--KVASYLWKESN 265 (265)
Q Consensus 229 ~v~~~~~--~~~~lGV~~~GI~v~~~~~--~~~~f~W~~i~ 265 (265)
.|+..+| .+++|.|+++||.+...+. ....+.|++|.
T Consensus 249 ~vk~~s~~~~~~~L~Vg~~GIs~~~~k~~~~~~~~~f~~I~ 289 (392)
T 4eku_A 249 RCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIR 289 (392)
T ss_dssp EEEEESSSCCCEEEEEETTEEEEECSSCSCCEEEECGGGBC
T ss_pred EEEeccCCcceeEEEEcCCcEEEECCCCCceeEEechHHce
Confidence 9986433 6788888888999976543 56899999874
No 13
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.89 E-value=1.9e-23 Score=208.82 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=151.2
Q ss_pred eeEeeCCCCCCcccccCCCccccccccc----cCCCceeeEEeeeccCCCCCCc--cchhhHHHHHHHHHHHHhcCCcc-
Q psy5417 2 IRVCDKTDEENTYGFETPSRSACKHLYK----CCVDHHSFFRLVQVSSNPPPDI--ISSRFRYQFFLQIKQDILQGRLP- 74 (265)
Q Consensus 2 l~y~d~~~~e~~~~wl~~~~~l~kq~~k----~~~~~~~l~frVkfy~~~p~~l--~~~~tR~l~ylQ~r~dil~grlp- 74 (265)
|||.+... ++.+||+|+++++++..| ....+|.+.|||||||++|..| .|..++++||+|+|.|+++|+++
T Consensus 55 L~~~~~~~--~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~ 132 (656)
T 2j0j_A 55 LRLSHLQS--EEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQ 132 (656)
T ss_dssp EEEEESSS--CCEEEECTTSBHHHHHHHHTTTSCTTSEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred EEEeeccc--CceeeeCCCCcHHHHHhhhcccCCCcceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhccccc
Confidence 67766632 478999999999994322 1246899999999999999877 56679999999999999999997
Q ss_pred CCHHHHHHHhHHHhhhhcccccccccccccccCCCCccccccccccccCCccccceeeccccccccccccccchhHHHHH
Q psy5417 75 VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILA 154 (265)
Q Consensus 75 ~~~e~a~~Laal~~Qae~Gd~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 154 (265)
|+.++|+.||+|.+|.+|||.+....+ + ..++--++
T Consensus 133 ~~~~~al~La~l~~~~~~~d~~~~a~~-----------------------------------~--------~~~~~~~~- 168 (656)
T 2j0j_A 133 VDQEIALKLGCLEIRRSYGEMRGNALE-----------------------------------K--------KSNYEVLE- 168 (656)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCTTGGG-----------------------------------S--------HHHHHHHH-
T ss_pred ccHhHHHHHHHHHHHHHhhhccchhhh-----------------------------------c--------CCCHHHHH-
Confidence 799999999999999999987422110 0 00000000
Q ss_pred hhhcccccccCCCCCCCCCCCCccccccCcc------chHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhccCCCCCceee
Q psy5417 155 SCLKKSLAELGDYDPRRHSPGYVSEFRFTSH------QSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLH 228 (265)
Q Consensus 155 ~~~~~~~~~~gd~~~~~h~~~yl~~~~~~p~------~~~~l~~~I~e~h~~l~G~t~~~A~~~yL~~~~~l~~YG~~~f 228 (265)
.+ +....|+|. +...++.+|.+.|+++.|+++.+|+++||+.++.++.||++.|
T Consensus 169 -------k~-------------~~~~~fiP~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f 228 (656)
T 2j0j_A 169 -------KD-------------VGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECF 228 (656)
T ss_dssp -------HT-------------TTGGGTSCHHHHHHSCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEE
T ss_pred -------hh-------------ccHHHhCCHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEE
Confidence 00 122357774 4667899999999999999999999999999999999999999
Q ss_pred eeecCCCCE--EEEEEeCC-ceEEeeCC--ceeeeeecCCC
Q psy5417 229 PVLGEDSIE--YFLGLTPA-GIVVLRNK--IKVASYLWKES 264 (265)
Q Consensus 229 ~v~~~~~~~--~~lGV~~~-GI~v~~~~--~~~~~f~W~~i 264 (265)
+|++.+|-. +-|.|+++ ||.....+ .......|++|
T Consensus 229 ~~~~~~g~~~~~~l~vg~~~GI~~~~~~~~~~~~~~~f~~I 269 (656)
T 2j0j_A 229 KCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQV 269 (656)
T ss_dssp EEEEESSSEEEEEEEEETTTEEEECCSSSSCCEEEECGGGE
T ss_pred eeccCCCCcccEEEEECCCCCeEEECCCCCCceecccccce
Confidence 999988854 77888887 99977643 23445566655
No 14
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=95.79 E-value=0.073 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcc-CCCCC
Q psy5417 194 VAELHRDLSGQTPSQAELNYLDRVKN-LPLYG 224 (265)
Q Consensus 194 I~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG 224 (265)
=-+.|.++.|||+++|+..|++.+.+ .|.||
T Consensus 57 Kw~AW~~l~gms~eeA~~~YI~~v~~l~~~~~ 88 (89)
T 1hbk_A 57 KYEAWKSVENLNREDAQKRYVDIVSEIFPYWQ 88 (89)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccccc
Confidence 35689999999999999999999977 56665
No 15
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=95.72 E-value=0.032 Score=42.37 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCCc
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYGV 225 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG~ 225 (265)
-+.|.++.||++++|+..|++.+.+ .|.||.
T Consensus 58 w~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky~~ 89 (89)
T 3epy_A 58 WEAWNLKKGLSTEDATSAYISKAKELIEKYGI 89 (89)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHhhhhcC
Confidence 4689999999999999999999977 445663
No 16
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=95.56 E-value=0.04 Score=41.56 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCC
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYG 224 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG 224 (265)
-+.|.++.||++++|+..|++.+.+ .+.||
T Consensus 56 w~AW~~l~gms~eeA~~~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 56 WDAWNELKGTSKEDAMKAYINKVEELKKKYG 86 (87)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999977 34455
No 17
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.059 Score=40.50 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=23.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN 219 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~ 219 (265)
-+.|.++.||++++|+..|++.+.+
T Consensus 55 w~AW~~l~gms~eeA~~~YI~~v~~ 79 (86)
T 1st7_A 55 WEAWENLKGKSQEDAEKEYIALVDQ 79 (86)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999976
No 18
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=95.11 E-value=0.063 Score=41.38 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcc-CCCCC
Q psy5417 194 VAELHRDLSGQTPSQAELNYLDRVKN-LPLYG 224 (265)
Q Consensus 194 I~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG 224 (265)
=-+.|.++.||++++|+..|++++.+ .|.||
T Consensus 64 Kw~AW~~l~gmS~eeAm~~YI~lv~~l~~~~~ 95 (96)
T 2lbb_A 64 KWEAWNALRGMSTESAKEAYVKLLDTLAPSWR 95 (96)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhchhc
Confidence 36789999999999999999999977 55565
No 19
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.88 E-value=0.19 Score=39.43 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCCce
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYGVD 226 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG~~ 226 (265)
-+.|.++.||++++|+..|++++.+ .|.|+..
T Consensus 62 w~AW~~l~gms~eeAm~~YI~lv~~l~~~~~~~ 94 (109)
T 2cop_A 62 WEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQ 94 (109)
T ss_dssp HHHHHSCTTCCHHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 5689999999999999999999987 5667643
No 20
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=94.08 E-value=0.17 Score=40.45 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCC
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYG 224 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG 224 (265)
-+.|.++.||++++|+..|++.+.+ ++.|+
T Consensus 82 w~AW~~l~gmS~eeAm~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 82 WDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhhCC
Confidence 4689999999999999999999976 34444
No 21
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.07 E-value=0.38 Score=38.22 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc-CCCCCc
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN-LPLYGV 225 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~-l~~YG~ 225 (265)
-+.|.++.||++++|+..|++++.+ .|.|+.
T Consensus 70 w~AW~~l~gms~eeAm~~YI~lv~~l~~~~~~ 101 (116)
T 2cqu_A 70 WDAWNALGSLPKEAARQNYVDLVSSLSPSLES 101 (116)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccccc
Confidence 5689999999999999999999987 455654
No 22
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=94.04 E-value=0.14 Score=40.00 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhcc
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKN 219 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~ 219 (265)
-+.|.++.||++++|+..|++.+.+
T Consensus 62 w~AW~~l~gmS~eeA~~~YI~~v~~ 86 (106)
T 3fp5_A 62 WDAWKSVEGTSKEVAYQKYVEKLLE 86 (106)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 23
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=93.39 E-value=0.23 Score=38.84 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhccC
Q psy5417 195 AELHRDLSGQTPSQAELNYLDRVKNL 220 (265)
Q Consensus 195 ~e~h~~l~G~t~~~A~~~yL~~~~~l 220 (265)
-+.|.++.||++++|+..|++.+.+|
T Consensus 66 w~AW~~l~gms~eeA~~~YI~~v~~l 91 (106)
T 2wh5_A 66 WDAWNSLGKMSREEAMSAYITEMKLV 91 (106)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 24
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=71.65 E-value=2.1 Score=34.40 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=25.8
Q ss_pred CcccccCCCccccccccccCCCceeeEEeeeccCCC
Q psy5417 12 NTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNP 47 (265)
Q Consensus 12 ~~~~wl~~~~~l~kq~~k~~~~~~~l~frVkfy~~~ 47 (265)
+..+|||.++.|.+|... +.-++.+|.|||-.|
T Consensus 95 d~~~WLD~srtL~EQGI~---e~~tllLRrKfffsd 127 (128)
T 2kc2_A 95 DELNWLDHGRTLREQGVE---EHETLLLRRKFFYSD 127 (128)
T ss_dssp SSEEEECSSSCHHHHTCC---TTSEEEEEESSCCCC
T ss_pred CCCCcccCCCcHHHcCCC---CCCEEEEEEEEeccC
Confidence 346899999999999874 345688999988543
No 25
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=22.34 E-value=44 Score=27.25 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=15.2
Q ss_pred hhhHHHHHHHH----HHHHhcCCc
Q psy5417 54 SRFRYQFFLQI----KQDILQGRL 73 (265)
Q Consensus 54 ~~tR~l~ylQ~----r~dil~grl 73 (265)
+-+|.+||.|+ |+++.+|--
T Consensus 49 SNFREFyYIQMEKfARQa~seGv~ 72 (152)
T 1mij_A 49 SNFREFYYIQMEKYARQAVTEGIK 72 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HhhHHHHHHHHHHHHHHHHHcccC
Confidence 56899999998 899988753
No 26
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=20.11 E-value=48 Score=27.55 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.4
Q ss_pred hhhHHHHHHHH----HHHHhcCC
Q psy5417 54 SRFRYQFFLQI----KQDILQGR 72 (265)
Q Consensus 54 ~~tR~l~ylQ~----r~dil~gr 72 (265)
+-+|.+||.|+ |++|.+|-
T Consensus 62 SNFREFyYIQMEKfARQa~seGv 84 (174)
T 2lmd_A 62 SNFREFYYIQMEKYARQAINDGV 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHHHHHccC
Confidence 57899999998 88998874
Done!