RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5417
(265 letters)
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 104 bits (261), Expect = 8e-27
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 147 SSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTP 206
+ L +L S +ELGDYDP H YVS+F+ +Q+ LE +V ELH+ TP
Sbjct: 130 FATLALLGSYT--IQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTP 187
Query: 207 SQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLWKE 263
+QA+L +L+ K L +YGVDLH + ++ LG+ +G++V ++K+++ + W +
Sbjct: 188 AQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPK 244
Score = 54.6 bits (131), Expect = 6e-09
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1 MIRVCDKTDE--ENTYGFETPSRSACKHLYKCCVDHHSFFR 39
I++ E E+T GF+ PS A K L+K CV+HH+FFR
Sbjct: 256 FIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296
Score = 54.2 bits (130), Expect = 7e-09
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 8 TDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQD 67
D + + ++ K + V + F V+ P + RY LQ++QD
Sbjct: 64 WDNATSKTWLDSAKEIKKQVRG--VPWNFTFN-VKFYPPDPAQLTEDITRYYLCLQLRQD 120
Query: 68 ILQGRLPVSFELSAELGAYVVQCKY 92
I+ GRLP SF A LG+Y +Q +
Sbjct: 121 IVAGRLPCSFATLALLGSYTIQSEL 145
Score = 39.9 bits (93), Expect = 4e-04
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ PS A K L+K CV+H
Sbjct: 268 ESTIGFKLPSYRAAKKLWKVCVEH 291
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 100 bits (250), Expect = 8e-26
Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--SAALESRVAELHRDLSGQTPSQAELNYLDRVKN 219
+ G ++ ++H G++ F + E ++ + H++ + +A++ Y+ ++
Sbjct: 62 IQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARS 121
Query: 220 LPLYGVDLHPVLGEDS-----IEYFLGLTPAGIVVLRNKIKVASYLW 261
L YGV V + + LG+T ++ + K K W
Sbjct: 122 LKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW 168
Score = 56.8 bits (137), Expect = 7e-10
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 56 FRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSF+ + E + Q ++
Sbjct: 28 QLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQF 64
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 101 bits (253), Expect = 4e-25
Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSA--ALESRVAELHRDLSGQTPSQAELNYLDRVKN 219
+ G ++ ++H G++ F + E ++ + H++ + +A++ Y+ ++
Sbjct: 216 IQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARS 275
Query: 220 LPLYGVDLHPVLGEDS-----IEYFLGLTPAGIVVLRNKIKVASYLW 261
L YGV V + + LG+T ++ + K K W
Sbjct: 276 LKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW 322
Score = 69.2 bits (169), Expect = 9e-14
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 1 MIRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQF 60
++R + +++ + R+ + + R S+ D
Sbjct: 129 LVRELMEEKKDDELNWLDHGRTLREQGVEE--HETLLLRRKFFYSDQNVDSRDPVQLNLL 186
Query: 61 FLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++Q + DIL G PVSF+ + E + Q ++
Sbjct: 187 YVQARDDILNGSHPVSFDKACEFAGFQCQIQF 218
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 102 bits (255), Expect = 6e-25
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 153 LASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQ 204
LAS A GD++P H PG+++ R + E + ++ G
Sbjct: 125 LASYA--VQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGM 182
Query: 205 TPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKV---ASYLW 261
A + YL ++L +YGV+ + + + E +LG+ G+ + K+ + W
Sbjct: 183 LREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPW 242
Query: 262 KE 263
E
Sbjct: 243 SE 244
Score = 60.3 bits (145), Expect = 1e-10
Identities = 18/85 (21%), Positives = 31/85 (36%)
Query: 8 TDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQD 67
TD + + + + K FR + ++I F+LQ+K
Sbjct: 50 TDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNA 109
Query: 68 ILQGRLPVSFELSAELGAYVVQCKY 92
IL + E S L +Y VQ ++
Sbjct: 110 ILSDEIYCPPETSVLLASYAVQARH 134
Score = 38.7 bits (89), Expect = 0.001
Identities = 6/57 (10%), Positives = 17/57 (29%)
Query: 1 MIRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFR 57
+ + + F P K + C+ +H + + + ++ R
Sbjct: 254 KFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAR 310
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 95.3 bits (237), Expect = 4e-24
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 153 LASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--SAALESRVAELHRDLSGQTPSQAE 210
A + + G ++ ++H PG++ F + E ++ H++ + +A+
Sbjct: 44 FAGYQCQ--IQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAK 101
Query: 211 LNYLDRVKNLPLYGVDLHPVLGEDS-----IEYFLGLTPAGIVVLRNKIKVASYLWKESN 265
+ Y+ ++L YGV V + + LG+T ++ + K K W +N
Sbjct: 102 VRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTN 161
Score = 59.1 bits (143), Expect = 8e-11
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 45 SNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
S+ D ++Q + DIL G PVSF+ + E Y Q ++
Sbjct: 6 SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQF 53
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 95.4 bits (237), Expect = 3e-23
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 153 LASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQ 204
LAS + A+ GDYDP H G++++ + E R+ + + G+
Sbjct: 142 LASYAVQ--AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGR 199
Query: 205 TPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKV---ASYLW 261
+AE+ YL ++L +YGV+ + + E LG+ G+ + + ++ S+ W
Sbjct: 200 ARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPW 259
Query: 262 KE 263
E
Sbjct: 260 NE 261
Score = 59.6 bits (144), Expect = 1e-10
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 11 ENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQ 70
++T + + H F N +++ ++ FFLQ+K+ IL
Sbjct: 70 KDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILD 129
Query: 71 GRLPVSFELSAELGAYVVQCKY 92
++ E S L +Y VQ KY
Sbjct: 130 EKIYCPPEASVLLASYAVQAKY 151
Score = 54.2 bits (130), Expect = 8e-09
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 IRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVS 44
I+ DK + + + F + K + + C+ +H F + +
Sbjct: 274 IKPLDK--KIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKA 314
Score = 39.2 bits (91), Expect = 8e-04
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 100 EENTYGFETPSRSACKHLYKCCVDH 124
+ + + F + K + + C+ +
Sbjct: 280 KIDVFKFNSSKLRVNKLILQLCIGN 304
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 87.7 bits (217), Expect = 1e-20
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
++ GD++ H GY++ + + E R+ H + G A L Y
Sbjct: 129 SKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEY 188
Query: 214 LDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKV---ASYLWKE 263
L ++L +YGV+ + + E +LG+ G+ + ++ + W E
Sbjct: 189 LKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSE 241
Score = 61.5 bits (149), Expect = 3e-11
Identities = 18/85 (21%), Positives = 32/85 (37%)
Query: 8 TDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQD 67
D + + ++ + FR + ++I + FFLQ+K+
Sbjct: 47 QDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEG 106
Query: 68 ILQGRLPVSFELSAELGAYVVQCKY 92
IL + E + L +Y VQ KY
Sbjct: 107 ILNDDIYCPPETAVLLASYAVQSKY 131
Score = 51.1 bits (122), Expect = 8e-08
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 1 MIRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQ 42
+I+ DK + + F P K + C+ +H + +
Sbjct: 253 VIKPIDK--KAPDFVFYAPRLRINKRILALCMGNHELYMRRR 292
Score = 38.4 bits (89), Expect = 0.001
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 97 VTDEENTYGFETPSRSACKHLYKCCVDH 124
+ + + F P K + C+ +
Sbjct: 257 IDKKAPDFVFYAPRLRINKRILALCMGN 284
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 73.5 bits (180), Expect = 2e-15
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 23/125 (18%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTS--------HQSAALESRVAELHRDLSGQTPSQAELN- 212
G+Y+ ++H G+++E S ++ +R+ +++LS E++
Sbjct: 147 IVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHH 206
Query: 213 ----YLDRVKNLPLYGVDLHPVLGEDS--------IEYFLGLTPAGIVVL--RNKIKVAS 258
+L +P YG I ++G+ G+ +L K + S
Sbjct: 207 LQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLIS 266
Query: 259 YLWKE 263
+
Sbjct: 267 LKYGC 271
Score = 68.5 bits (167), Expect = 1e-13
Identities = 9/76 (11%), Positives = 20/76 (26%)
Query: 17 ETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVS 76
+ R V++ I F + + ++L+G
Sbjct: 74 PEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAP 133
Query: 77 FELSAELGAYVVQCKY 92
L + ++Q Y
Sbjct: 134 DAKLITLASLLLQIVY 149
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 71.5 bits (174), Expect = 2e-14
Identities = 32/244 (13%), Positives = 70/244 (28%), Gaps = 42/244 (17%)
Query: 25 KHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELG 84
+ F+ + + S F Q + ++ G P E L
Sbjct: 289 AATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLA 348
Query: 85 AYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTL 144
A +Q + P+ Y+ ++ +R +
Sbjct: 349 ALRLQYLQG-------------------------DYTLHAAIPPLEEVYSLQRLKARISQ 383
Query: 145 GLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQ 204
+ + S +++ + E D + ++ + + + R G
Sbjct: 384 STKTFSFRTGSVVRQKVEEEQMLDMWIK------------EEVSSARASIIDKWRKFQGM 431
Query: 205 TPSQAELNYLDRVKNLPLYGVDLHPV---LGEDSIEYFLGLTPAGIVVLRNKIK--VASY 259
QA Y+ +K P YG L V G E +LG++ + V + + +
Sbjct: 432 NQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVF 491
Query: 260 LWKE 263
++
Sbjct: 492 QYEH 495
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 49.1 bits (116), Expect = 5e-07
Identities = 21/200 (10%), Positives = 53/200 (26%), Gaps = 61/200 (30%)
Query: 57 RYQFFLQIKQDILQGRLP-VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACK 115
F+ Q++ D +Q VS ++ +LG ++ +K + + FE +
Sbjct: 134 LLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKE--- 190
Query: 116 HLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPG 175
L K + E
Sbjct: 191 -----------------------------------VGLDLFFPKQMQE------------ 203
Query: 176 YVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPV-LGED 234
+ + + + + + + + + + + + + L +
Sbjct: 204 --------NLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQG 255
Query: 235 -SIEYFLGLTPAGIVVLRNK 253
+I L + P GI L ++
Sbjct: 256 WNITVDLVIGPKGIRQLTSQ 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 6e-06
Identities = 45/291 (15%), Positives = 75/291 (25%), Gaps = 87/291 (29%)
Query: 3 RVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRL-VQVSSNPPP--DIISSRF--- 56
+ + ++ TP K L +D L +V + P II+
Sbjct: 285 TTTHISLDHHSMTL-TPDEV--KSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 57 --RYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSAC 114
+ + + D L + S L + + L+V F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSV--------FP------- 382
Query: 115 KHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLW----------ILASCLKKSLAEL 164
P I LS ++W ++ K SL E
Sbjct: 383 --------PSAHIPTIL--------------LS-LIWFDVIKSDVMVVVNKLHKYSLVE- 418
Query: 165 GDYDPRRHS-PGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDR------- 216
S P E + AL + + + YLD+
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 217 --VKNLPLYG-VDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLWKES 264
+KN+ + L ++ FL L KI+ S W S
Sbjct: 479 HHLKNIEHPERMTLFRMV-------FLDFR-----FLEQKIRHDSTAWNAS 517
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 132 TYAYGKIHSRCTLGLSSMLWILASCLK----KSLAE-----LGDYDPRRHSP-GYVSEF- 180
T ++G + L + + + +AS L+ K L E D +P +P V +F
Sbjct: 10 TLSHGSL--EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAELVGKFL 65
Query: 181 RFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFL 240
+ S S+V + + L L + L G D+H + + L
Sbjct: 66 GYVSSLVE--PSKVGQFDQVL------NLCLTEFENCY---LEGNDIHALAAK-----LL 109
Query: 241 GLTPAGIVVLRNKIKVASYL 260
+V + IK +Y+
Sbjct: 110 QENDTTLVKTKELIK--NYI 127
Score = 35.4 bits (81), Expect = 0.019
Identities = 48/296 (16%), Positives = 78/296 (26%), Gaps = 114/296 (38%)
Query: 50 DIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCK---YKTL-AVT-----DE 100
D S+R L G L + Q + K L T D+
Sbjct: 2 DAYSTR---PLTLS------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 101 ENT--------Y-GF-----ETPSRSACKHLYKCCVDHVACPMITTYAYGK-IHSRCTLG 145
E T + G+ E + C+ Y G IH+
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHAL---- 104
Query: 146 LSSMLWILASCLKKSLAELGDY----------DPRRHSP------------------G-- 175
+ +L + L K+ + +Y ++ + G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 176 ----YVSEFR--FTSHQS--AALESRVAELHRDLS------------G-------QTPSQ 208
Y E R + ++ L AE +L G + PS
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 209 A-ELNYLDRVK-NLPL--------YGVDLHPVLG---EDSIEYFLGLT--PAGIVV 249
+ +YL + + PL Y V +LG + Y G T G+V
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGHSQGLVT 279
Score = 28.5 bits (63), Expect = 3.0
Identities = 46/287 (16%), Positives = 82/287 (28%), Gaps = 111/287 (38%)
Query: 36 SFFRLVQVSSNPPPDIISSRF-------RYQFFLQIKQDIL--QGRLPVSF-ELSAELGA 85
++ ++ P +S Q I QG F EL +L
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IFGGQGNTDDYFEEL-RDL-- 176
Query: 86 YVVQCKYKTL-----------------AVTDEENTY--GFE----------TPSRSACKH 116
Y Y L D E + G TP +
Sbjct: 177 YQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD---- 229
Query: 117 LYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDP---RRHS 173
Y + ++CP+I G+ + + + +L + P R +
Sbjct: 230 -YLLSIP-ISCPLI--------------GVIQLAHYVVTA------KLLGFTPGELRSYL 267
Query: 174 PGYVSEFRFTSHQ----SAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGV---- 225
G T H +A +A + ++ + L GV
Sbjct: 268 KG------ATGHSQGLVTAVA---IA------ETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 226 -----DLHPVLGEDSIEYFLGLTPAGIVVLRN--KIKVASYLWKESN 265
L P + EDS+E G P+ ++ + N + +V Y+ ++N
Sbjct: 313 AYPNTSLPPSILEDSLENNEG-VPSPMLSISNLTQEQVQDYV-NKTN 357
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 42.2 bits (98), Expect = 1e-04
Identities = 10/119 (8%), Positives = 31/119 (26%), Gaps = 16/119 (13%)
Query: 161 LAELGDYDPRRHS----PGYVSEFRFTSHQSA-ALESRVAELHR----DLSGQTPSQAEL 211
+ G P Y+ + T ++ H+ + +
Sbjct: 403 FVDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKE 462
Query: 212 NYLDRVK-NLPLYGVDLHPVLGED-----SIEYFLGLTPAGIVVLRNKIKV-ASYLWKE 263
+ ++ + PL + + + + G+ + + +V + E
Sbjct: 463 DVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELSFPE 521
Score = 36.1 bits (82), Expect = 0.010
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 4 VCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRLVQVSSNPPPDIISSRFRYQFFLQ 63
V D + Y E ++ ++ F S + + Q
Sbjct: 325 VMDAISQCEQYAKEQGAQER-NAPWRLFFRKEVFTPWHNPSEDN-------VATNLIYQQ 376
Query: 64 IKQDILQGRLPVSFELS-AELGAYVVQCKY 92
+ + + G E AEL + Y
Sbjct: 377 VVRGVKFGEYRCEKEDDLAELASQQYFVDY 406
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 40.6 bits (94), Expect = 3e-04
Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 62/210 (29%)
Query: 57 RYQFFLQIKQDILQGRLP-VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACK 115
F+ Q+K D + V E++ +LG ++ Y + E +E +
Sbjct: 114 LNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKD--- 170
Query: 116 HLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPG 175
L KSL +
Sbjct: 171 -----------------------------------VGLRRFFPKSLLD------------ 183
Query: 176 YVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGED- 234
S ++ L + + R + ++ L + + + + + +
Sbjct: 184 --------SVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSS 235
Query: 235 -SIEYFLGLTPA-GIVVLRNKIKVASYLWK 262
I L + P GI L +K ++L
Sbjct: 236 WIISVELAIGPEEGISYLTDKGANPTHLAD 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.20
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 210 ELNYLDRVKN-LPLYGVDLHPVLG-EDSIE 237
E L +++ L LY D P L + ++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 29.0 bits (66), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 218 KNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRN 252
+ P+YGV HP +S+ T G +L N
Sbjct: 165 EEYPIYGVQFHP----ESV-----GTSLGYKILYN 190
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 28.2 bits (64), Expect = 2.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 218 KNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVA 257
+ G HP +SI LT G +L + A
Sbjct: 159 DADRVCGFQFHP----ESI-----LTTQGARLLEQTLAWA 189
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 27.4 bits (61), Expect = 5.5
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 223 YGVD---LHPVLGEDSIEYFLGLTPAGIVVL 250
P +G DS++ F+ + VL
Sbjct: 104 LNAHAITASPYMGSDSLQPFMRYPDKAVFVL 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,084,839
Number of extensions: 235996
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 44
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)