RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5417
(265 letters)
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 67.2 bits (164), Expect = 5e-15
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHRDLSGQTPSQAELNYLDRVKNLP 221
+ELGDYDP H YVS+F+ +Q+ LE +V ELH+ TP+QA+L +L+ K L
Sbjct: 45 SELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLS 104
Query: 222 LY 223
+Y
Sbjct: 105 MY 106
Score = 50.3 bits (120), Expect = 7e-09
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 57 RYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
RY LQ++QDI+ GRLP SF A LG+Y +Q +
Sbjct: 12 RYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSEL 47
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 63.0 bits (153), Expect = 2e-13
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--SAALESRVAELHRDLSGQTPSQAELNYLDRVKN 219
+ G ++ ++H PG++ F + E ++ H++ + +A++ Y+ ++
Sbjct: 51 IQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARS 110
Query: 220 LPLY 223
L Y
Sbjct: 111 LKTY 114
Score = 50.3 bits (120), Expect = 8e-09
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 45 SNPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTY 104
S+ D ++Q + DIL G PVSF+ + E Y QC+ + ++++
Sbjct: 6 SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGY--QCQIQFGPHNEQKHKP 63
Query: 105 GFETPSRSACKHLYKC 120
GF K K
Sbjct: 64 GFLELKDFLPKEYIKQ 79
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 59.9 bits (145), Expect = 2e-12
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 162 AELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNY 213
A+ GDYDP H G++++ + E R+ + + G+ +AE+ Y
Sbjct: 45 AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY 104
Query: 214 LDRVKNL 220
L ++L
Sbjct: 105 LKIAQDL 111
Score = 58.3 bits (141), Expect = 9e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 51 IISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKY 92
++ ++ FFLQ+K+ IL ++ E S L +Y VQ KY
Sbjct: 6 LVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 47
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 59.9 bits (145), Expect = 2e-12
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 46 NPPPDIISSRFRYQFFLQIKQDILQGRLPVSFELSAELGAYVVQCKYKTLAVTDEENTYG 105
+ ++I + FFLQ+K+ IL + E + L +Y VQ KY E + G
Sbjct: 1 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGD--FNKEVHKSG 58
Query: 106 FETPSRSACKHLYKCC 121
+ + + + +
Sbjct: 59 YLAGDKLLPQRVLEQH 74
Score = 56.8 bits (137), Expect = 3e-11
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 163 ELGDYDPRRHSPGYVSEFRFTSHQ--------SAALESRVAELHRDLSGQTPSQAELNYL 214
+ GD++ H GY++ + + E R+ H + G A L YL
Sbjct: 46 KYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYL 105
Query: 215 DRVKNL 220
++L
Sbjct: 106 KIAQDL 111
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 54.1 bits (130), Expect = 2e-10
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1 MIRVCDKTDE--ENTYGFETPSRSACKHLYKCCVDHHSFFR 39
I++ E E+T GF+ PS A K L+K CV+HH+FFR
Sbjct: 52 FIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 92
Score = 49.8 bits (119), Expect = 6e-09
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 224 GVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVASYLWKE 263
GVDLH + ++ LG+ +G++V ++K+++ + W +
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPK 40
Score = 38.7 bits (90), Expect = 6e-05
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 101 ENTYGFETPSRSACKHLYKCCVDH 124
E+T GF+ PS A K L+K CV+H
Sbjct: 64 ESTIGFKLPSYRAAKKLWKVCVEH 87
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 49.8 bits (119), Expect = 7e-09
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 1 MIRVCDKTDEENTYGFETPSRSACKHLYKCCVDHHSFFRL 40
I+ DK + + + F + K + + C+ +H F
Sbjct: 58 TIKPLDK--KIDVFKFNSSKLRVNKLILQLCIGNHDLFMR 95
Score = 44.8 bits (106), Expect = 4e-07
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKV---ASYLWKE 263
+YGV+ + + E LG+ G+ + + ++ S+ W E
Sbjct: 2 MYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNE 46
Score = 38.3 bits (89), Expect = 1e-04
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 99 DEENTYGFETPSRSACKHLYKCCVDH 124
+ + + F + K + + C+ +
Sbjct: 64 KKIDVFKFNSSKLRVNKLILQLCIGN 89
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 49.1 bits (117), Expect = 2e-08
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 9 DEENTYGFETPSRSACKHLYKCCVDHHSFFR 39
+ + F P K + C+ +H +
Sbjct: 64 KKAPDFVFYAPRLRINKRILALCMGNHELYM 94
Score = 46.0 bits (109), Expect = 2e-07
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 222 LYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKV---ASYLWKE 263
+YGV+ + + E +LG+ G+ + ++ + W E
Sbjct: 2 MYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSE 46
Score = 38.7 bits (90), Expect = 7e-05
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDH 124
K+ + + + F P K + C+ +
Sbjct: 56 KFVIKPIDKKAPDFVFYAPRLRINKRILALCMGN 89
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 43.9 bits (103), Expect = 2e-06
Identities = 5/76 (6%), Positives = 20/76 (26%), Gaps = 14/76 (18%)
Query: 162 AELGDYDPRRHSP--------------GYVSEFRFTSHQSAALESRVAELHRDLSGQTPS 207
G+ + + S ++ L + + R +
Sbjct: 48 RSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNRE 107
Query: 208 QAELNYLDRVKNLPLY 223
++ L + + + + +
Sbjct: 108 ESILKFFEILSPVYRF 123
Score = 37.4 bits (86), Expect = 3e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 57 RYQFFLQIKQDILQGRLP-VSFELSAELGAYVVQCKYKTLAVTDEENTYGFETPSRSACK 115
F+ Q+K D + V E++ +LG ++ Y + E +E +
Sbjct: 14 LNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGL 73
Query: 116 HLY 118
+
Sbjct: 74 RRF 76
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 28.3 bits (62), Expect = 0.76
Identities = 25/173 (14%), Positives = 40/173 (23%), Gaps = 10/173 (5%)
Query: 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHS 140
G VV + + A E E P ++
Sbjct: 21 RASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPII 80
Query: 141 RCTLGLSSMLWILASCLKKS-LAELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAELHR 199
LG +++ + ++ G H + A S V
Sbjct: 81 GICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIP 140
Query: 200 DLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRN 252
E+ R + G HP +SI LT G +L
Sbjct: 141 ADLTVNARFGEMVMAVRDDRRRVCGFQFHP----ESI-----LTTHGARLLEQ 184
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 27.2 bits (59), Expect = 1.7
Identities = 27/180 (15%), Positives = 40/180 (22%), Gaps = 17/180 (9%)
Query: 81 AELGAYVVQCKYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACP---MITTYAYGK 137
LG T + S C + +
Sbjct: 21 RYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGICL 80
Query: 138 IHSRCTLGLSSMLWILASCLKKSLAELGDYDPRRHSPGYVSEFRFTSHQSAALESRVAEL 197
H + E+ D G + V EL
Sbjct: 81 GHQLIAKFFGGKVGRGEKAEYSL-VEIEIIDEDEIFKGLPKRLKVWESHMDE----VKEL 135
Query: 198 HRDLSGQTPSQAELNYLDRVKNLPLYGVDLHPVLGEDSIEYFLGLTPAGIVVLRNKIKVA 257
S+ + + LP+YGV HP E + T G +LRN K+
Sbjct: 136 PPKFKILARSETCPIEAMKHEELPIYGVQFHP---EVA------HTEKGEEILRNFAKLC 186
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 26.6 bits (58), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 155 SCLKKSLAELGDYD---PRRHSPGYVSEFRFTS 184
S L++ L E+G+ + P RH P + +FR +S
Sbjct: 93 SILEQRLLEIGNNNVSVPERHIPSHFQKFRRSS 125
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 25.0 bits (53), Expect = 8.9
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 91 KYKTLAVTDEENTYGFETPSRSACKHLYKCCVDHVACPMITTYAYGKIHSRCTLGLSSML 150
+Y L + G E P + ++ + ++ + T
Sbjct: 47 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHQISHSWTGNLVTNKTWDHF 106
Query: 151 WI 152
W+
Sbjct: 107 WL 108
>d1oxda_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish
(Aequorea victoria) [TaxId: 6100]}
Length = 227
Score = 25.1 bits (55), Expect = 9.5
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 48 PPDIISSRFRYQFFLQIKQDI 68
P + + Q F + +
Sbjct: 56 PWPTLVTTLXVQCFSRYPDHM 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,542
Number of extensions: 45947
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 26
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)