Query psy5425
Match_columns 233
No_of_seqs 54 out of 56
Neff 1.5
Searched_HMMs 46136
Date Fri Aug 16 17:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0563|consensus 99.1 2.3E-11 5E-16 115.0 2.8 57 25-94 5-66 (499)
2 PLN02333 glucose-6-phosphate 1 98.7 5.1E-09 1.1E-13 100.7 1.9 56 24-92 104-164 (604)
3 PF00479 G6PD_N: Glucose-6-pho 98.6 5.8E-09 1.3E-13 85.1 -0.5 41 41-94 1-47 (183)
4 PTZ00309 glucose-6-phosphate 1 98.6 3.3E-08 7.2E-13 93.7 2.8 45 35-92 52-101 (542)
5 PLN02539 glucose-6-phosphate 1 98.5 3.3E-08 7.1E-13 92.7 1.3 49 32-92 12-65 (491)
6 PRK12853 glucose-6-phosphate 1 98.5 4.1E-08 8.9E-13 91.6 1.2 45 35-92 6-55 (482)
7 TIGR00871 zwf glucose-6-phosph 98.5 4.6E-08 1E-12 91.0 1.0 44 36-92 1-49 (482)
8 PRK05722 glucose-6-phosphate 1 98.4 5.6E-08 1.2E-12 90.8 1.0 48 35-95 7-60 (495)
9 PRK12854 glucose-6-phosphate 1 98.4 6.4E-08 1.4E-12 90.6 1.2 45 35-92 9-58 (484)
10 PLN02640 glucose-6-phosphate 1 98.4 8E-08 1.7E-12 92.1 1.6 48 32-92 83-135 (573)
11 COG0364 Zwf Glucose-6-phosphat 98.1 8.3E-07 1.8E-11 84.1 1.3 47 35-94 5-56 (483)
12 KOG2675|consensus 95.9 0.01 2.3E-07 57.1 4.6 87 67-176 135-248 (480)
13 PF01213 CAP_N: Adenylate cycl 73.0 1.1 2.4E-05 40.5 0.0 19 67-85 131-149 (312)
14 PF05308 Mito_fiss_reg: Mitoch 66.8 4.4 9.6E-05 35.8 2.3 15 86-100 111-125 (253)
15 PF15195 TMEM210: TMEM210 fami 64.9 4 8.7E-05 33.5 1.6 10 163-172 103-112 (116)
16 PF01690 PLRV_ORF5: Potato lea 59.7 5.5 0.00012 38.7 1.8 26 189-214 52-77 (465)
17 PLN03132 NADH dehydrogenase (u 47.0 12 0.00025 36.0 1.7 12 164-175 14-25 (461)
18 PF01213 CAP_N: Adenylate cycl 46.0 6.8 0.00015 35.6 0.0 13 111-123 191-203 (312)
19 KOG1924|consensus 44.4 16 0.00036 38.6 2.4 17 112-128 494-510 (1102)
20 PHA03211 serine/threonine kina 41.6 15 0.00032 33.6 1.5 8 148-155 34-41 (461)
21 KOG3397|consensus 40.9 22 0.00048 32.0 2.4 34 43-76 47-81 (225)
22 PLN02748 tRNA dimethylallyltra 37.2 39 0.00084 32.3 3.5 54 33-88 18-88 (468)
23 KOG2675|consensus 36.8 24 0.00052 34.7 2.1 16 117-132 116-131 (480)
24 PRK11104 hemG protoporphyrinog 34.0 49 0.0011 26.6 3.2 58 3-61 8-88 (177)
25 KOG3397|consensus 32.6 32 0.00069 31.0 2.1 14 131-144 135-148 (225)
26 PF12141 DUF3589: Protein of u 30.6 47 0.001 32.3 3.0 51 40-90 297-355 (498)
27 PHA02662 ORF131 putative membr 30.0 33 0.00071 31.0 1.7 17 162-178 2-18 (226)
28 PF07172 GRP: Glycine rich pro 29.2 57 0.0012 25.1 2.7 21 95-115 2-22 (95)
29 KOG0162|consensus 29.0 40 0.00087 35.8 2.4 26 40-65 895-927 (1106)
30 PLN00141 Tic62-NAD(P)-related 27.8 34 0.00073 27.4 1.3 19 33-51 13-31 (251)
31 PF08898 DUF1843: Domain of un 26.1 15 0.00032 26.8 -0.9 11 45-55 12-22 (53)
32 KOG2391|consensus 24.8 46 0.00099 31.9 1.8 53 167-219 172-238 (365)
33 KOG2500|consensus 24.5 88 0.0019 28.8 3.4 30 127-162 151-183 (253)
34 PF13460 NAD_binding_10: NADH( 24.2 44 0.00094 24.9 1.2 13 40-52 1-13 (183)
35 PF06201 PITH: PITH domain; I 22.4 1.2E+02 0.0025 24.7 3.4 40 37-76 59-102 (152)
36 PF11636 Troponin-I_N: Troponi 22.4 29 0.00063 23.9 0.0 6 172-177 19-24 (36)
37 TIGR02397 dnaX_nterm DNA polym 22.1 1.4E+02 0.0031 25.0 4.0 38 2-50 12-49 (355)
38 KOG0162|consensus 22.1 93 0.002 33.2 3.5 17 188-204 1046-1062(1106)
No 1
>KOG0563|consensus
Probab=99.12 E-value=2.3e-11 Score=114.96 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=51.2
Q ss_pred ccccCccCCCCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceehhh
Q psy5425 25 QEVEGTHFDQNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVGWV 94 (233)
Q Consensus 25 ml~EGThFd~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~~~ 94 (233)
+.+++.+++.+.+|+|||||||||||||||| |||+|+ +|. .++++|.+|+.|.++=.
T Consensus 5 ~~~~~~~~~~~~~~~iiVfGASGDLAKKK~fPaLf~L~~~g~--------lp~-----~~~i~GYARSklt~ee~ 66 (499)
T KOG0563|consen 5 GVVQEQDLQGESTLSIIVFGASGDLAKKKIFPALFALYREGL--------LPE-----DFKIFGYARSKLTDEEL 66 (499)
T ss_pred hhhhccccCCcceEEEEEEecCchhhhcchhHHHHHHHHhcc--------CCC-----ceEEEEEecccCChHHH
Confidence 4468889999999999999999999999999 999999 777 78999999999887643
No 2
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=98.70 E-value=5.1e-09 Score=100.65 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=47.4
Q ss_pred cccccCccCCCCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 24 TQEVEGTHFDQNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 24 eml~EGThFd~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
++.++..+++...+++||||||||||||||+| ||++|+ +|. .+..+|++|++++-+
T Consensus 104 ~~~~~~~~~~~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~--------Lp~-----~~~IiG~aRs~~t~e 164 (604)
T PLN02333 104 KVVAEFDGNKDESTVSITVVGASGDLAKKKIFPALFALYYEGC--------LPE-----HFTIFGYARSKMTDA 164 (604)
T ss_pred ccccCCCcccCCCceEEEEecCccHHhHhhHHHHHHHHHHcCC--------CCC-----CCEEEEEECCCCCHH
Confidence 34556666778889999999999999999999 888887 776 678899999999853
No 3
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=98.61 E-value=5.8e-09 Score=85.13 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=33.2
Q ss_pred EEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeecccee-hhh
Q psy5425 41 VTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKV-GWV 94 (233)
Q Consensus 41 VVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v-~~~ 94 (233)
|||||||||||||+| ||++|+ +|. .+..+|+.|.|++. +|.
T Consensus 1 VifGatGDLA~RKL~PaL~~L~~~g~--------lp~-----~~~Iig~~R~~~~~~~f~ 47 (183)
T PF00479_consen 1 VIFGATGDLAKRKLLPALYNLYRDGL--------LPE-----DFRIIGVARSDLSDEEFR 47 (183)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHTTS--------S-S-----SEEEEEEESS--SHHCCH
T ss_pred CEeccccHHHHhHHHHHHHHHHHhCC--------CCC-----CcEEEEecCCcCCHHHHH
Confidence 899999999999999 888888 887 68899999999986 343
No 4
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=98.55 E-value=3.3e-08 Score=93.74 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
+.+++||||||||||||||+| ||++|+ +|. .+..||++|.+++.+
T Consensus 52 ~~~~~iVIFGATGDLA~RKL~PAL~~L~~~g~--------lp~-----~~~IiG~aR~~~~~e 101 (542)
T PTZ00309 52 SRALTIIVLGASGDLAKKKTFPALFQLYCEGL--------LPS-----EVNIVGYARSKMSDV 101 (542)
T ss_pred CCCeEEEEecCccHHhhhhHHHHHHHHHHcCC--------CCC-----CCEEEEEeCCCCCcH
Confidence 458999999999999999999 777877 777 788899999999986
No 5
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=98.50 E-value=3.3e-08 Score=92.68 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCCCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 32 FDQNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 32 Fd~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
.++..+++||||||||||||||+| ||++|+ +|++ .+..+|++|++++.+
T Consensus 12 ~~~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~--------lpp~----~~~IiG~aR~~~s~e 65 (491)
T PLN02539 12 VVETGCLSIIVLGASGDLAKKKTFPALFNLYRQGF--------LPPD----EVHIFGYARSKITDE 65 (491)
T ss_pred cCCCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCC--------CCCC----CcEEEEEECCCCCHH
Confidence 467788999999999999999999 788887 7442 567899999999876
No 6
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=98.48 E-value=4.1e-08 Score=91.60 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=38.7
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
..+++||||||||||||||+| ||++|+ +|. .+..||.+|.+.+.+
T Consensus 6 ~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~--------lp~-----~~~IiG~aR~~~~~e 55 (482)
T PRK12853 6 APPCTLVIFGATGDLARRKLLPALYRLARAGL--------LPE-----DLRIIGVGRDDWSDE 55 (482)
T ss_pred CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCC--------CCC-----CCEEEEEeCCcCCHH
Confidence 457899999999999999999 777776 776 677899999998754
No 7
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=98.45 E-value=4.6e-08 Score=91.02 Aligned_cols=44 Identities=41% Similarity=0.486 Sum_probs=38.6
Q ss_pred CCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 36 IPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 36 ~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
++++||||||||||||||+| ||++|+ +|. .+..||.+|++++.+
T Consensus 1 ~~~~~vifGatGDLa~rkL~PaL~~L~~~~~--------lp~-----~~~Iig~aR~~~s~e 49 (482)
T TIGR00871 1 DPCILVIFGASGDLARKKLFPALYRLFRNGL--------LPP-----DFRIVGVARRDLSVE 49 (482)
T ss_pred CCeEEEEECCccHHHHhhHHHHHHHHHHcCC--------CCC-----CCEEEEEECCCCCHH
Confidence 36799999999999999999 777776 777 778899999999975
No 8
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=98.43 E-value=5.6e-08 Score=90.76 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeecccee-hhhH
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKV-GWVA 95 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v-~~~~ 95 (233)
..+++||||||||||||||+| ||++|+ +|. .+..+|++|++++. +|-.
T Consensus 7 ~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~--------lp~-----~~~IiG~aR~~~~~e~~r~ 60 (495)
T PRK05722 7 AEPCDLVIFGATGDLARRKLLPALYNLYKAGL--------LPE-----DFRIIGVARRDWSDEDFRE 60 (495)
T ss_pred CCCeEEEEeCCchHHhHhhHHHHHHHHHHcCC--------CCC-----CCEEEEEECCCCCHHHHHH
Confidence 457899999999999999999 778877 776 67889999999986 4544
No 9
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=98.43 E-value=6.4e-08 Score=90.63 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=39.6
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
..+++||||||||||||||+| ||++|+ +|. .+..+|++|.+++.+
T Consensus 9 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~--------lp~-----~~~IiG~aR~~~~~e 58 (484)
T PRK12854 9 APPTVFVLFGATGDLAKRKLLPGLFHLARAGL--------LPP-----DWRIVGTGRGDVSAE 58 (484)
T ss_pred CCCeEEEEeCCchHHhhhhHHHHHHHHHHcCC--------CCC-----CCEEEEEECCCCCHH
Confidence 457999999999999999999 788887 777 688899999999865
No 10
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=98.42 E-value=8e-08 Score=92.05 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=41.2
Q ss_pred CCCCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 32 FDQNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 32 Fd~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
..++.+++||||||||||||||+| ||++|+ +|. .+..+|++|.+++-+
T Consensus 83 ~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~--------Lp~-----~~~IIG~aR~~~s~e 135 (573)
T PLN02640 83 EKGESTLSITVVGASGDLAKKKIFPALFALFYEDW--------LPE-----NFTVFGYARTKLTDE 135 (573)
T ss_pred cCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCC--------CCC-----CCEEEEEECCCCCHH
Confidence 346779999999999999999999 777777 776 677899999998865
No 11
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=8.3e-07 Score=84.12 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceehhh
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVGWV 94 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~~~ 94 (233)
..+..+||||||||||+||.+ ||++|+ +|. ...-+|.+|++++.+-.
T Consensus 5 ~~~~~lvIFGatGDLA~RKL~PALy~L~~~g~--------l~~-----~~~IiG~aR~~~s~e~f 56 (483)
T COG0364 5 VEPFDLVIFGATGDLARRKLFPALYRLYKEGL--------LPE-----DFRIIGVARSKWSNEEF 56 (483)
T ss_pred cCcceEEEEcccchhhhhhHHHHHHHHHHcCC--------CCC-----CceEEEEecCcCChHHH
Confidence 356789999999999999999 777777 777 56689999999987743
No 12
>KOG2675|consensus
Probab=95.88 E-value=0.01 Score=57.07 Aligned_cols=87 Identities=38% Similarity=0.621 Sum_probs=50.4
Q ss_pred CCCCCcccccceeEEEEEe---------------------------eccceehhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5425 67 NGLSPVEEADLKVSWVALK---------------------------RADLKVGWVALKRALLLSLLLDAYLVVESLADLI 119 (233)
Q Consensus 67 ~~~~p~~~~~~~~~~v~~~---------------------------radl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (233)
|-|+-+.|+-=-..||+++ .-|..|+||---.++++. |-+|+- .---.=
T Consensus 135 NhLsav~e~i~algWVav~~tP~p~vke~~daa~FY~NrvLkEyk~~D~~hveWvKa~l~l~~e--L~~YVk--~hhtTG 210 (480)
T KOG2675|consen 135 NHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFYTNRVLKEYKEKDPRHVEWVKAYLALFLE--LQAYVK--EHHTTG 210 (480)
T ss_pred HHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH--HHHHHH--Hhcccc
Confidence 5567777777778999998 346679999655555555 556632 111111
Q ss_pred hhhccCCCCcccceeeeeceeeeecCCcceeeeeCCCCCCCCCCCCCCCCCCCCccc
Q psy5425 120 LDIRSLPGTARGATFCVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPL 176 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (233)
|-..+-+|.+ |+.|. +|.++...+-|+||||+|||.|.
T Consensus 211 l~W~~~g~~~-------~~~sa------------~~~~~s~~g~PPPPPP~PPp~~~ 248 (480)
T KOG2675|consen 211 LVWNKDGGAA-------PDASA------------SPKAASAPGAPPPPPPAPPPAPF 248 (480)
T ss_pred ceecCCCCcc-------ccccc------------CcCcccCCCCCCCCCCCCCCccc
Confidence 2222222222 22222 67777777777777776666663
No 13
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=73.00 E-value=1.1 Score=40.47 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=10.2
Q ss_pred CCCCCcccccceeEEEEEe
Q psy5425 67 NGLSPVEEADLKVSWVALK 85 (233)
Q Consensus 67 ~~~~p~~~~~~~~~~v~~~ 85 (233)
|-|+-+.|.---+.||+..
T Consensus 131 NHLsavsEgi~aLgWV~v~ 149 (312)
T PF01213_consen 131 NHLSAVSEGIPALGWVAVE 149 (312)
T ss_dssp HHHHHHHCGGGGGGGGG--
T ss_pred HHHHHHHHhhheeeeeeeC
Confidence 4455566665566666654
No 14
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=66.80 E-value=4.4 Score=35.81 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=11.6
Q ss_pred eccceehhhHHHHHH
Q psy5425 86 RADLKVGWVALKRAL 100 (233)
Q Consensus 86 radl~v~~~~~~~~~ 100 (233)
.++.+++=.|||+.-
T Consensus 111 ~~~~~~~~~AlqKIs 125 (253)
T PF05308_consen 111 QSDLPANEAALQKIS 125 (253)
T ss_pred ccccCCCHHHHHHHH
Confidence 347888889999863
No 15
>PF15195 TMEM210: TMEM210 family
Probab=64.85 E-value=4 Score=33.52 Aligned_cols=10 Identities=80% Similarity=1.823 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q psy5425 163 SPTPPPPPPP 172 (233)
Q Consensus 163 ~~~~~~~~~~ 172 (233)
+|.+||||||
T Consensus 103 ~p~~pppppP 112 (116)
T PF15195_consen 103 SPEEPPPPPP 112 (116)
T ss_pred CCCCCCcCcC
Confidence 3333333333
No 16
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=59.69 E-value=5.5 Score=38.69 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=15.9
Q ss_pred ccccCCchhhhhhhhhCcccceeEee
Q psy5425 189 ELKLKPPCLSLLRYVMDPKVSRFQVS 214 (233)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (233)
.+.+++--..-+||+-|-+-..+++.
T Consensus 52 ~I~v~~l~~q~~~yiEdE~~~~~~i~ 77 (465)
T PF01690_consen 52 SISVRSLNSQRMRYIEDENWNWVNID 77 (465)
T ss_pred ceEeeccCceeEEEEecccceeEEec
Confidence 34555555566677777776665553
No 17
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=46.96 E-value=12 Score=36.03 Aligned_cols=12 Identities=83% Similarity=1.968 Sum_probs=5.6
Q ss_pred CCCCCCCCCCcc
Q psy5425 164 PTPPPPPPPPPP 175 (233)
Q Consensus 164 ~~~~~~~~~~~~ 175 (233)
.||.||||||||
T Consensus 14 ~~~~~~~~~~~~ 25 (461)
T PLN03132 14 ATPQPPPPPPPP 25 (461)
T ss_pred CCCCCcccCCCC
Confidence 344444444444
No 18
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=45.99 E-value=6.8 Score=35.57 Aligned_cols=13 Identities=8% Similarity=0.273 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhhc
Q psy5425 111 VVESLADLILDIR 123 (233)
Q Consensus 111 ~~~~~~~~~~~~~ 123 (233)
+.+.|.+.|-+.-
T Consensus 191 l~~~L~~YVke~h 203 (312)
T PF01213_consen 191 LLKELQAYVKEHH 203 (312)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 3456666666654
No 19
>KOG1924|consensus
Probab=44.42 E-value=16 Score=38.58 Aligned_cols=17 Identities=18% Similarity=0.093 Sum_probs=9.7
Q ss_pred HHHHHhhhhhhccCCCC
Q psy5425 112 VESLADLILDIRSLPGT 128 (233)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ 128 (233)
-+.|+..+--|.-++++
T Consensus 494 qael~k~e~Ki~~l~ae 510 (1102)
T KOG1924|consen 494 QAELQKHEEKIKLLEAE 510 (1102)
T ss_pred HHHHHHhhhhcccCchh
Confidence 34455566666666654
No 20
>PHA03211 serine/threonine kinase US3; Provisional
Probab=41.57 E-value=15 Score=33.60 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.4
Q ss_pred ceeeeeCC
Q psy5425 148 QHATWISP 155 (233)
Q Consensus 148 ~~~~~~~~ 155 (233)
-|.|...|
T Consensus 34 ~~~~~~~~ 41 (461)
T PHA03211 34 PPETFYNP 41 (461)
T ss_pred CCCCCCCC
Confidence 34444444
No 21
>KOG3397|consensus
Probab=40.95 E-value=22 Score=31.99 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=20.4
Q ss_pred EcccccccceeEEEeecCCCc-cccCCCCCccccc
Q psy5425 43 FGASVSTFFIKVRVFRIGLPN-IASNGLSPVEEAD 76 (233)
Q Consensus 43 fGASGDLAKKKIYLfRDgL~~-~~~~~~~p~~~~~ 76 (233)
+|+|-|-.---..|--++-+. |+-.-||++...+
T Consensus 47 L~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~ 81 (225)
T KOG3397|consen 47 LKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRD 81 (225)
T ss_pred hhcccCCCCeeeeeecccccceeeeeccccCCCCC
Confidence 678887666666665566554 3445566665443
No 22
>PLN02748 tRNA dimethylallyltransferase
Probab=37.17 E-value=39 Score=32.34 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCCCeEEEEEcccc--------cccce---eEE------EeecCCCccccCCCCCcccccceeEEEEEeecc
Q psy5425 33 DQNIPHIFVTFGASV--------STFFI---KVR------VFRIGLPNIASNGLSPVEEADLKVSWVALKRAD 88 (233)
Q Consensus 33 d~~~~HiFVVfGASG--------DLAKK---KIY------LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~rad 88 (233)
......+++|+|++| +||++ .|. +|| |+ +|.+|-.++-|.+.++-..+++.--+
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYr-gL-dIgTaKpt~eE~~~VpHHLid~v~p~ 88 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYS-GL-DVLTNKVPLHEQKGVPHHLLGVISPS 88 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeC-Cc-chhcCCCCHHHHcCCCCeeEeecCCC
Confidence 445566899999987 46666 244 888 67 79999999988899999999887544
No 23
>KOG2675|consensus
Probab=36.82 E-value=24 Score=34.75 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.6
Q ss_pred hhhhhhccCCCCcccc
Q psy5425 117 DLILDIRSLPGTARGA 132 (233)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (233)
|.|..|-.+-+.-|++
T Consensus 116 e~i~eI~~fkE~nRkS 131 (480)
T KOG2675|consen 116 EEIGEINNFKEKNRKS 131 (480)
T ss_pred HhhhHHhhhhhcccCc
Confidence 4455555555666643
No 24
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=33.95 E-value=49 Score=26.61 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=35.1
Q ss_pred ccccCChHHHHHHHHHHhhhcccccc---CccCC--CCCCeEEEEEcccc------------------cccceeEEEeec
Q psy5425 3 FSVIGNTEETLTLIRKSLRSATQEVE---GTHFD--QNIPHIFVTFGASV------------------STFFIKVRVFRI 59 (233)
Q Consensus 3 ~Sv~ls~eE~L~lIRKSLks~eml~E---GThFd--~~~~HiFVVfGASG------------------DLAKKKIYLfRD 59 (233)
.|..++++++-+.|.+.|.. ...++ -...+ +-..|=.||+|++- +|..|++.+|==
T Consensus 8 ~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v 86 (177)
T PRK11104 8 SSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSV 86 (177)
T ss_pred ECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 35677889988999888863 11111 11111 11235679999983 456677777765
Q ss_pred CC
Q psy5425 60 GL 61 (233)
Q Consensus 60 gL 61 (233)
|+
T Consensus 87 ~l 88 (177)
T PRK11104 87 NL 88 (177)
T ss_pred ch
Confidence 54
No 25
>KOG3397|consensus
Probab=32.57 E-value=32 Score=30.99 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=7.4
Q ss_pred cceeeeeceeeeec
Q psy5425 131 GATFCVPTRMINFR 144 (233)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (233)
|-..|-|..|..|+
T Consensus 135 GYe~c~Pi~~~~~~ 148 (225)
T KOG3397|consen 135 GYEKCDPIVHSTTA 148 (225)
T ss_pred cccccCceeccccc
Confidence 45555555555444
No 26
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=30.61 E-value=47 Score=32.25 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=33.1
Q ss_pred EEEEcccccccceeEE-EeecCCCccccCCCCC-------cccccceeEEEEEeeccce
Q psy5425 40 FVTFGASVSTFFIKVR-VFRIGLPNIASNGLSP-------VEEADLKVSWVALKRADLK 90 (233)
Q Consensus 40 FVVfGASGDLAKKKIY-LfRDgL~~~~~~~~~p-------~~~~~~~~~~v~~~radl~ 90 (233)
-.++++.-++.++.-. ..|-|-.-|--+.+.| .....-|-.||||+||-|+
T Consensus 297 ~~v~~~~~~~~~~~~vG~lRGGTqli~lp~~~~~~~~~~~~~~~~~r~iWvGfaRaHl~ 355 (498)
T PF12141_consen 297 EFVYKADFDLSDKNKVGPLRGGTQLIPLPSILPSYNLSIKPKIPKGREIWVGFARAHLK 355 (498)
T ss_pred eEEEccccccCcccccCCcccccceEECCccccccccccccccCCCceEEEEeeHhhcc
Confidence 4567776655544444 7777765555555555 3344558899999999875
No 27
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=29.96 E-value=33 Score=30.96 Aligned_cols=17 Identities=59% Similarity=1.208 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCccccc
Q psy5425 162 PSPTPPPPPPPPPPLRA 178 (233)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (233)
|.+|||.||.||-|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (226)
T PHA02662 2 PPRTPPTPPRPPEPTPA 18 (226)
T ss_pred CCCCCCCCCCCCCCCcc
Confidence 56777777777777665
No 28
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.16 E-value=57 Score=25.10 Aligned_cols=21 Identities=52% Similarity=0.566 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5425 95 ALKRALLLSLLLDAYLVVESL 115 (233)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ 115 (233)
|-|.+|||.|+|-+.|+|-|-
T Consensus 2 aSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred chhHHHHHHHHHHHHHHHHhh
Confidence 468889999999888887764
No 29
>KOG0162|consensus
Probab=29.01 E-value=40 Score=35.78 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=16.2
Q ss_pred EEEEccc-ccccceeEE------EeecCCCccc
Q psy5425 40 FVTFGAS-VSTFFIKVR------VFRIGLPNIA 65 (233)
Q Consensus 40 FVVfGAS-GDLAKKKIY------LfRDgL~~~~ 65 (233)
-|-||-+ ||+++-|-+ --++|||+-.
T Consensus 895 tV~~~~~~~~~~~~k~~~Ks~tvsvg~GlP~~S 927 (1106)
T KOG0162|consen 895 TVQFGIDFEDLKVLKDIYKSLTVSVGTGLPPNS 927 (1106)
T ss_pred eEEeccCccchhhhccccceeEEEecCCCCCCC
Confidence 4667777 677665433 4578887643
No 30
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.81 E-value=34 Score=27.39 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=14.0
Q ss_pred CCCCCeEEEEEcccccccc
Q psy5425 33 DQNIPHIFVTFGASVSTFF 51 (233)
Q Consensus 33 d~~~~HiFVVfGASGDLAK 51 (233)
.|.+.-.++|+||||.+.+
T Consensus 13 ~~~~~~~ilItGasG~iG~ 31 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGK 31 (251)
T ss_pred ccccCCeEEEECCCcHHHH
Confidence 4455668999999997543
No 31
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=26.08 E-value=15 Score=26.79 Aligned_cols=11 Identities=27% Similarity=-0.022 Sum_probs=8.6
Q ss_pred ccccccceeEE
Q psy5425 45 ASVSTFFIKVR 55 (233)
Q Consensus 45 ASGDLAKKKIY 55 (233)
|||||++-|-.
T Consensus 12 asGDLa~MK~l 22 (53)
T PF08898_consen 12 ASGDLAQMKAL 22 (53)
T ss_pred HcCcHHHHHHH
Confidence 78999887754
No 32
>KOG2391|consensus
Probab=24.82 E-value=46 Score=31.90 Aligned_cols=53 Identities=36% Similarity=0.542 Sum_probs=35.1
Q ss_pred CCCCCCCcccccchhcccCcccccccCCc--------------hhhhhhhhhCcccceeEeehhhhh
Q psy5425 167 PPPPPPPPPLRASALQTMSIPTELKLKPP--------------CLSLLRYVMDPKVSRFQVSVSELR 219 (233)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (233)
||-|||||+.-||+++-|.-+..-.-++- -...+|+.++-++.|.|+-.++|+
T Consensus 172 ~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasvisa~~eklR~r~eeeme~~~aeq~slk 238 (365)
T KOG2391|consen 172 PPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASVISAVREKLRRRREEEMERLQAEQESLK 238 (365)
T ss_pred CCCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677889888877665443321 123578888888888887776664
No 33
>KOG2500|consensus
Probab=24.49 E-value=88 Score=28.82 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=17.9
Q ss_pred CCcccceeeeeceeeeec---CCcceeeeeCCCCCCCCC
Q psy5425 127 GTARGATFCVPTRMINFR---NKTQHATWISPSGRNSDP 162 (233)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 162 (233)
|--.|-|+ -||.+ ||+.-+.|+- .|++..+
T Consensus 151 gFKEGeTI-----kinikn~tkk~g~~s~pr-~~~gk~g 183 (253)
T KOG2500|consen 151 GFKEGETI-----KINIKNITKKKGAASWPR-TGPGKGG 183 (253)
T ss_pred cccCCcEE-----EEEeeccccccccccccc-cCCCCCc
Confidence 55567665 35666 6777777764 3455544
No 34
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.18 E-value=44 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=10.1
Q ss_pred EEEEcccccccce
Q psy5425 40 FVTFGASVSTFFI 52 (233)
Q Consensus 40 FVVfGASGDLAKK 52 (233)
++|+||||-+.+.
T Consensus 1 I~V~GatG~vG~~ 13 (183)
T PF13460_consen 1 ILVFGATGFVGRA 13 (183)
T ss_dssp EEEETTTSHHHHH
T ss_pred eEEECCCChHHHH
Confidence 5799999987543
No 35
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=22.43 E-value=1.2e+02 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=23.9
Q ss_pred CeEEEEEcc-cccccceeEEEeecCCCcccc---CCCCCccccc
Q psy5425 37 PHIFVTFGA-SVSTFFIKVRVFRIGLPNIAS---NGLSPVEEAD 76 (233)
Q Consensus 37 ~HiFVVfGA-SGDLAKKKIYLfRDgL~~~~~---~~~~p~~~~~ 76 (233)
-|+++|-|+ .++.+=|+|.||-...||+-- ....|..+-+
T Consensus 59 l~si~i~~~~~~~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~ 102 (152)
T PF06201_consen 59 LHSIIIKGPPDDDSAPKTIKLFINQRPNLDFDDAESIKPTQELE 102 (152)
T ss_dssp EEEEEEE---STTTSEEEEEEEES-SS---CCHHCCS--SCEEE
T ss_pred EEEEEEEeccCCCCCCeEEEEEECCCCCcCccccccCCCCceEE
Confidence 478889998 999999999999876777642 2344554433
No 36
>PF11636 Troponin-I_N: Troponin I residues 1-32; InterPro: IPR021666 This family of proteins represents the cardiac N-extension of troponin I. This region of the protein (1-32) interacts with the N-lobe of cTnC and modulates myofilament calcium(2) sensitivity []. ; PDB: 2JPW_A.
Probab=22.41 E-value=29 Score=23.86 Aligned_cols=6 Identities=67% Similarity=1.697 Sum_probs=0.0
Q ss_pred CCcccc
Q psy5425 172 PPPPLR 177 (233)
Q Consensus 172 ~~~~~~ 177 (233)
.|||+|
T Consensus 19 ~pp~iR 24 (36)
T PF11636_consen 19 APPPIR 24 (36)
T ss_dssp ------
T ss_pred hhhhhh
Confidence 445454
No 37
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.06 E-value=1.4e+02 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=27.1
Q ss_pred cccccCChHHHHHHHHHHhhhccccccCccCCCCCCeEEEEEccccccc
Q psy5425 2 TFSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGASVSTF 50 (233)
Q Consensus 2 ~~Sv~ls~eE~L~lIRKSLks~eml~EGThFd~~~~HiFVVfGASGDLA 50 (233)
+++.....+++++.+++.++ ++..+|.+++.|-.|=..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GK 49 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGK 49 (355)
T ss_pred cHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCH
Confidence 44445556777888888774 345789999999998543
No 38
>KOG0162|consensus
Probab=22.05 E-value=93 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.381 Sum_probs=11.4
Q ss_pred cccccCCchhhhhhhhh
Q psy5425 188 TELKLKPPCLSLLRYVM 204 (233)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (233)
++-+.+|-|..+..|.-
T Consensus 1046 ~~~~k~p~~~A~Y~y~g 1062 (1106)
T KOG0162|consen 1046 AKPPKNPVCEALYDYPG 1062 (1106)
T ss_pred CCCCCCcceeeeccCCC
Confidence 34566788888877753
Done!