Query psy5425
Match_columns 233
No_of_seqs 54 out of 56
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 17:12:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e9i_A Glucose-6-phosphate 1-d 98.7 2.4E-09 8.2E-14 100.2 0.8 46 34-92 51-101 (541)
2 2bh9_A G6PD, glucose-6-phospha 98.7 2.7E-09 9.1E-14 98.8 0.9 46 34-92 2-52 (489)
3 1dpg_A G6PD, glucose 6-phospha 98.6 4.8E-09 1.6E-13 97.0 1.0 45 35-92 3-52 (485)
4 3iot_A Maltose-binding protein 46.4 4.2 0.00014 33.6 0.0 10 11-20 190-199 (449)
5 3iot_A Maltose-binding protein 44.0 4.8 0.00016 33.2 0.0 14 8-21 184-197 (449)
6 2h6f_A Protein farnesyltransfe 40.0 6 0.00021 33.0 0.0 12 162-173 20-31 (382)
7 2pk3_A GDP-6-deoxy-D-LYXO-4-he 35.2 15 0.0005 28.1 1.5 11 39-49 14-24 (321)
8 1xoy_A Hypothetical protein AT 35.2 40 0.0014 26.7 4.1 39 37-77 72-113 (161)
9 3ehr_A Osteoclast-stimulating 33.3 9 0.00031 27.7 0.0 6 187-192 28-33 (222)
10 1gvn_B Zeta; postsegregational 29.1 74 0.0025 25.6 4.8 40 5-48 5-44 (287)
11 1njg_A DNA polymerase III subu 27.0 71 0.0024 22.1 3.7 31 7-48 26-56 (250)
12 4i8n_A Tyrosine-protein phosph 24.9 19 0.00065 30.6 0.6 8 117-124 282-289 (354)
13 4i8n_A Tyrosine-protein phosph 24.8 15 0.00053 31.2 0.0 9 127-135 252-260 (354)
14 2cqw_A Sushi domain containing 24.1 25 0.00085 26.5 1.0 14 147-160 70-83 (84)
15 2pqh_A Spectrin alpha chain, b 22.2 18 0.00063 23.9 -0.0 13 132-144 45-57 (80)
No 1
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=98.69 E-value=2.4e-09 Score=100.22 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 34 QNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 34 ~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
.+.+++||||||||||||||+| |||+|+ +|. .+..||++|++++.+
T Consensus 51 ~~~~~~lVIFGatGDLA~RKL~PALy~L~~~g~--------Lp~-----~~~IiG~aR~~~t~e 101 (541)
T 4e9i_A 51 RSRALTIVVLGASGDLAKKKTFPALFQLYCNGM--------LPR-----DVNILGYARSTMEDV 101 (541)
T ss_dssp CCEEEEEEEETTTSHHHHHTHHHHHHHHHHTTC--------SCT-----TEEEEEEESCCCSCH
T ss_pred CCCCeEEEEeccchHHhhhHHHHHHHHHHHcCC--------CCC-----CcEEEEEECCCCChh
Confidence 4568999999999999999999 899988 887 788999999999886
No 2
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=98.69 E-value=2.7e-09 Score=98.84 Aligned_cols=46 Identities=37% Similarity=0.450 Sum_probs=41.4
Q ss_pred CCCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 34 QNIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 34 ~~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
++.+++||||||||||||||+| |||+|+ +|. .+..||++|++++.+
T Consensus 2 ~~~~~~~VIFGatGDLA~RKL~PaLy~L~~~g~--------Lp~-----~~~iiG~aR~~~~~~ 52 (489)
T 2bh9_A 2 QSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGL--------LPE-----NTFIVGYARSRLTVA 52 (489)
T ss_dssp CCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTC--------SCS-----SEEEEEEESSCCCHH
T ss_pred CCCCeEEEEeCCcHHHHHHhHHHHHHHHHHcCC--------CCC-----CcEEEEEeCCCCCHH
Confidence 4677899999999999999999 888888 887 788999999999875
No 3
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=98.64 E-value=4.8e-09 Score=96.97 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCCeEEEEEcccccccceeEE-----EeecCCCccccCCCCCcccccceeEEEEEeeccceeh
Q psy5425 35 NIPHIFVTFGASVSTFFIKVR-----VFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVG 92 (233)
Q Consensus 35 ~~~HiFVVfGASGDLAKKKIY-----LfRDgL~~~~~~~~~p~~~~~~~~~~v~~~radl~v~ 92 (233)
+.+++||||||||||||||+| |||+|+ +|. .+..||++|++++.+
T Consensus 3 ~~~~~~VIFGatGDLA~RKL~PaLy~L~~~g~--------Lp~-----~~~iiG~aR~~~~~~ 52 (485)
T 1dpg_A 3 EIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGY--------LQK-----HFAIVGTARQALNDD 52 (485)
T ss_dssp CCCEEEEEETTTSHHHHHTHHHHHHHHHHTTS--------SCS-----SEEEEEEESSCCCHH
T ss_pred CCCeEEEEECCcHHHHHHhHHHHHHHHHhcCC--------CCC-----CcEEEEEeCCCCCHH
Confidence 456899999999999999999 889888 887 789999999999876
No 4
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=46.42 E-value=4.2 Score=33.57 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=5.0
Q ss_pred HHHHHHHHHh
Q psy5425 11 ETLTLIRKSL 20 (233)
Q Consensus 11 E~L~lIRKSL 20 (233)
++++.+++..
T Consensus 190 ~al~~~~~l~ 199 (449)
T 3iot_A 190 AGLTFLVDLI 199 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=43.99 E-value=4.8 Score=33.21 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=6.1
Q ss_pred ChHHHHHHHHHHhh
Q psy5425 8 NTEETLTLIRKSLR 21 (233)
Q Consensus 8 s~eE~L~lIRKSLk 21 (233)
+.++..+.++....
T Consensus 184 ~~~~~~~al~~~~~ 197 (449)
T 3iot_A 184 DNAGAKAGLTFLVD 197 (449)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444444433
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=40.04 E-value=6 Score=33.04 Aligned_cols=12 Identities=58% Similarity=1.456 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q psy5425 162 PSPTPPPPPPPP 173 (233)
Q Consensus 162 ~~~~~~~~~~~~ 173 (233)
++|||+|+||||
T Consensus 20 ~~~~~~~~~~~~ 31 (382)
T 2h6f_A 20 AQPPPQPHPPPP 31 (382)
T ss_dssp ------------
T ss_pred cCCCCCCCCCCc
Confidence 344444333333
No 7
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=35.23 E-value=15 Score=28.13 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=8.8
Q ss_pred EEEEEcccccc
Q psy5425 39 IFVTFGASVST 49 (233)
Q Consensus 39 iFVVfGASGDL 49 (233)
.++|.||||-+
T Consensus 14 ~vlVTGatG~i 24 (321)
T 2pk3_A 14 RALITGVAGFV 24 (321)
T ss_dssp EEEEETTTSHH
T ss_pred eEEEECCCChH
Confidence 46788999975
No 8
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=35.19 E-value=40 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=27.8
Q ss_pred CeEEEEEcccccccceeEEEeecCCCccc---cCCCCCcccccc
Q psy5425 37 PHIFVTFGASVSTFFIKVRVFRIGLPNIA---SNGLSPVEEADL 77 (233)
Q Consensus 37 ~HiFVVfGASGDLAKKKIYLfRDgL~~~~---~~~~~p~~~~~~ 77 (233)
-|+++|.|..+ -+=|+|-||. |+|+|- ...+.|..+-+|
T Consensus 72 l~Si~i~~~~~-~~Pk~iKlf~-N~~~ldFd~a~~~~p~Q~~el 113 (161)
T 1xoy_A 72 LHSFAIKGPEE-EGPKTVKFFS-NKEHMCFSNVNDFPPSDTAEL 113 (161)
T ss_dssp EEEEEEECCTT-TSEEEEEEEE-SCSCCCHHHHTTSCCSEEECC
T ss_pred EEEEEEECCCC-CCCcEEEEee-CCCCCChhhhccCCCceEEEC
Confidence 47788888776 8889999995 478875 445667765443
No 9
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=33.26 E-value=9 Score=27.68 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=2.4
Q ss_pred cccccc
Q psy5425 187 PTELKL 192 (233)
Q Consensus 187 ~~~~~~ 192 (233)
+.|+.+
T Consensus 28 ~~el~~ 33 (222)
T 3ehr_A 28 PDELYI 33 (222)
T ss_dssp TTBCCC
T ss_pred CCcccc
Confidence 344443
No 10
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=29.12 E-value=74 Score=25.59 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=26.1
Q ss_pred ccCChHHHHHHHHHHhhhccccccCccCCCCCCeEEEEEccccc
Q psy5425 5 VIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGASVS 48 (233)
Q Consensus 5 v~ls~eE~L~lIRKSLks~eml~EGThFd~~~~HiFVVfGASGD 48 (233)
.+.+.++....+++.+.... +.......+.++|+.|.||-
T Consensus 5 ~~~s~~~~~~~~~~~~~~~l----~~~~~~~~~~livl~G~sGs 44 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEELI----QGKKAVESPTAFLLGGQPGS 44 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHH----TTCCCCSSCEEEEEECCTTS
T ss_pred cCCCHHHHHHHHHHHHHHHh----ccccCCCCCeEEEEECCCCC
Confidence 45566777777777664221 22234566889999999983
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=26.97 E-value=71 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHhhhccccccCccCCCCCCeEEEEEccccc
Q psy5425 7 GNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGASVS 48 (233)
Q Consensus 7 ls~eE~L~lIRKSLks~eml~EGThFd~~~~HiFVVfGASGD 48 (233)
...++.++.+++.+.. +..+|.++|.|.+|=
T Consensus 26 ~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~ 56 (250)
T 1njg_A 26 VGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGV 56 (250)
T ss_dssp CSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTS
T ss_pred hCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCC
Confidence 3456677778777741 234578999999883
No 12
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=24.90 E-value=19 Score=30.64 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=3.7
Q ss_pred hhhhhhcc
Q psy5425 117 DLILDIRS 124 (233)
Q Consensus 117 ~~~~~~~~ 124 (233)
+.+..+|.
T Consensus 282 ~~V~~lR~ 289 (354)
T 4i8n_A 282 KVLLEMRK 289 (354)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444543
No 13
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=24.81 E-value=15 Score=31.20 Aligned_cols=9 Identities=56% Similarity=1.224 Sum_probs=4.1
Q ss_pred CCcccceee
Q psy5425 127 GTARGATFC 135 (233)
Q Consensus 127 ~~~~~~~~~ 135 (233)
|..|-+|||
T Consensus 252 GvGRTGtfi 260 (354)
T 4i8n_A 252 GIGRSGTFC 260 (354)
T ss_dssp SSHHHHHHH
T ss_pred CcchHHHHH
Confidence 444444444
No 14
>2cqw_A Sushi domain containing 2; somatomedin_B-like domain, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.05 E-value=25 Score=26.49 Aligned_cols=14 Identities=50% Similarity=0.959 Sum_probs=11.6
Q ss_pred cceeeeeCCCCCCC
Q psy5425 147 TQHATWISPSGRNS 160 (233)
Q Consensus 147 ~~~~~~~~~~~~~~ 160 (233)
.||.+|.+|+|-.|
T Consensus 70 v~~~~~~~~~~~~~ 83 (84)
T 2cqw_A 70 VQHLKWTDPSGPSS 83 (84)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred EeeecccCCCCCCC
Confidence 48999999998654
No 15
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=22.20 E-value=18 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.7
Q ss_pred ceeeeeceeeeec
Q psy5425 132 ATFCVPTRMINFR 144 (233)
Q Consensus 132 ~~~~~~~~~~~~~ 144 (233)
..=.||...+...
T Consensus 45 ~~G~~P~~yv~~~ 57 (80)
T 2pqh_A 45 RQGFVPAAYVKKL 57 (80)
T ss_dssp EEEEEEGGGEEEC
T ss_pred cEEEEehHHeEEc
Confidence 3345676555443
Done!