RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5425
(233 letters)
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 154 SPSGRNSDPSPTP----PPPPPPPPPLRASALQTMSIPTELKLK 193
+ S S P+ P PPPPPPPPP +LQ + +L +
Sbjct: 167 TTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKE 210
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 35.6 bits (82), Expect = 0.016
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP 175
P+ +S PS PPPPPPPPP
Sbjct: 223 PAVSSSAPSAPPPPPPPPPPS 243
Score = 32.1 bits (73), Expect = 0.23
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 162 PSPTPPPPPPPPPP 175
+P PPPPPPPP
Sbjct: 231 SAPPPPPPPPPPSV 244
Score = 31.7 bits (72), Expect = 0.29
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 145 NKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIP 187
+K + S PPPPPPPP + + S+
Sbjct: 210 SKKGPVAAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISNSVE 252
>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional.
Length = 537
Score = 34.5 bits (79), Expect = 0.039
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 139 RMINFRNKTQHATWISPSG-RNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCL 197
R ++ W P P PP P P L + S+ +LK
Sbjct: 59 RFKDWEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFRNRSLSEIERLKVEAE 118
Query: 198 SLLRYVM 204
L ++M
Sbjct: 119 LSLNHIM 125
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 33.3 bits (76), Expect = 0.078
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP 175
P+ N+DP+P PPPP
Sbjct: 34 PATANADPAPPPPPPSTAAAA 54
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.9 bits (75), Expect = 0.13
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 158 RNSDPSPTPPPPPPPPPP 175
R +P P PPPPPPPP P
Sbjct: 265 RLPEPEPQPPPPPPPPEP 282
Score = 32.5 bits (74), Expect = 0.20
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 161 DPSPTPPPPPPPPPP 175
+P P PPPPPP PP
Sbjct: 270 EPQPPPPPPPPEPPE 284
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 164 PTPPPPPPPPPPLRASALQTMSIP---TELKLKPPCLSL--LRYVMDPKVSRFQVSVSEL 218
P PPPPP PP P + P E P L + + + +V
Sbjct: 274 PPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTVQRR 333
Query: 219 RS 220
R
Sbjct: 334 RG 335
Score = 27.5 bits (61), Expect = 8.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 162 PSPTPPPPPPPPP 174
P P PPPP PP P
Sbjct: 273 PPPPPPPPEPPEP 285
>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein 1;
Provisional.
Length = 461
Score = 32.9 bits (75), Expect = 0.14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 153 ISPSGRNSDPSPTPPPPPPPPPPLRAS 179
+ S + + + TP PPPPPPPP +
Sbjct: 3 RAFSTQAAATAATPQPPPPPPPPEKTH 29
Score = 27.9 bits (62), Expect = 5.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 166 PPPPPPPPPPLRASA 180
P PPPPPPP +
Sbjct: 15 TPQPPPPPPPPEKTH 29
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 32.8 bits (75), Expect = 0.15
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 162 PSPTPPPPPPPPPP 175
P PTP PPPP P P
Sbjct: 9 PGPTPTPPPPAPTP 22
Score = 32.4 bits (74), Expect = 0.17
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 162 PSPTPPPPPPPPPP 175
P+PTPPPP P P P
Sbjct: 11 PTPTPPPPAPTPEP 24
Score = 31.6 bits (72), Expect = 0.31
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 160 SDPSPTPPPPPPPPPP 175
P P P P PPPP P
Sbjct: 5 PGPKPGPTPTPPPPAP 20
Score = 28.5 bits (64), Expect = 3.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 160 SDPSPTPPPPPPPPPP 175
+P P P P P PPPP
Sbjct: 3 GEPGPKPGPTPTPPPP 18
Score = 27.8 bits (62), Expect = 5.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 161 DPSPTPPPPPPPPPP 175
P+P PP P P P P
Sbjct: 12 TPTPPPPAPTPEPTP 26
>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase.
Length = 534
Score = 32.2 bits (73), Expect = 0.22
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 145 NKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVM 204
N+ + S + PS P P P R S+ MS P L +
Sbjct: 7 NQAKGLVDHSRRQHHKSPSFLSPQPRPLASLSRFSSTSEMSASDSTSSLPVTLDTI---- 62
Query: 205 DPKVSRFQVSV 215
+PKV + + +V
Sbjct: 63 NPKVLKCEYAV 73
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 31.8 bits (72), Expect = 0.23
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 163 SPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
S +P PP P PP + P E PP
Sbjct: 6 SRSPSPPRRPSPPRPTPPRSPDASPEETPPSPP 38
Score = 29.1 bits (65), Expect = 2.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 158 RNSDPSPTPPPPPPPPPP 175
R SP+PP P PP P
Sbjct: 3 RARSRSPSPPRRPSPPRP 20
Score = 28.7 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 158 RNSDPSPTPPPPPPPPPPLRAS 179
R+ PSP P PP P P R+
Sbjct: 5 RSRSPSPPRRPSPPRPTPPRSP 26
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein.
Length = 94
Score = 30.1 bits (67), Expect = 0.27
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 162 PSPTPPPPPPPPPPLRASALQT 183
P+P PPPPP PP P+ ++
Sbjct: 18 PAPVPPPPPAPPAPVPEPTVKP 39
Score = 26.2 bits (57), Expect = 6.2
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTE 189
P P PPPPP PP + E
Sbjct: 16 LPPAPVPPPPPAPPAPVPEPTVKPVNAE 43
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.8 bits (72), Expect = 0.37
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 155 PSGRNSDPSPTPP--PPPPPPPPLRASALQTMSIPTELKLKPP 195
+ PSP PP P PPPP + A + PP
Sbjct: 2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649
Score = 29.9 bits (67), Expect = 1.3
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
P P P PPPP P P P + +PP
Sbjct: 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
Score = 29.9 bits (67), Expect = 1.4
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
S P P PP P P + +PP
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932
Score = 28.4 bits (63), Expect = 3.8
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
P P PP P P P + + PP
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934
Score = 27.6 bits (61), Expect = 7.2
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 158 RNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
R S PSP P PP A+AL + P P
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
Score = 27.6 bits (61), Expect = 7.3
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSL 199
+DP P PPP P P P SA P + P L
Sbjct: 2699 ADP-PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA 2737
Score = 27.6 bits (61), Expect = 7.4
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 155 PSGRNSDPSPTPPP-----PPPPPPPLRASALQTMSIPTELKLKPP 195
P R + P+ + PP P P PP
Sbjct: 2882 PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 31.2 bits (71), Expect = 0.38
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 137 PTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTE-----LK 191
P+ +T R S P P PPP P P S + T +
Sbjct: 216 PSASSESATSKSASTS-----RESSPQPQSPPPRRVPAPTVDSTAKEAEQITYQAKRLFQ 270
Query: 192 LKPPCLSLLRYVM 204
P L+R +
Sbjct: 271 EYPERSKLIRKAL 283
>gnl|CDD|223067 PHA03380, PHA03380, transactivating tegument protein VP16;
Provisional.
Length = 432
Score = 31.2 bits (71), Expect = 0.48
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 160 SDPSPTPPPPPPPPPPLR---ASALQTMSIPTELKLKPPCLSLLRY 202
PSP+ P P PPL AS ++P L L L LL Y
Sbjct: 373 DPPSPSAVLPGDPVPPLTVSVASTAADAAMPPALALDDFELDLLEY 418
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 30.7 bits (69), Expect = 0.49
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 167 PPPPPPPPPLRASALQTMSIP 187
PPPPPPPPP RA ++ P
Sbjct: 119 PPPPPPPPPARAEPAPPVARP 139
Score = 30.7 bits (69), Expect = 0.55
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 165 TPPPPPPPPPPLRASA 180
+PPPPPPPPP A
Sbjct: 118 SPPPPPPPPPARAEPA 133
Score = 27.6 bits (61), Expect = 5.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 163 SPTPPPPPPPP 173
SP PPPPPPP
Sbjct: 118 SPPPPPPPPPA 128
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 30.8 bits (70), Expect = 0.66
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 161 DPSPTPPPPPPPPPP 175
P PPPPPPPP
Sbjct: 263 QPPEEEPPPPPPPPE 277
Score = 29.6 bits (67), Expect = 1.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 160 SDPSPTPPPPPPPPPP 175
P PPPPPPPP
Sbjct: 261 PPQPPEEEPPPPPPPP 276
Score = 28.5 bits (64), Expect = 3.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 161 DPSPTPPPPPPPPPP 175
P PPPPPPPP
Sbjct: 264 PPEEEPPPPPPPPED 278
Score = 27.7 bits (62), Expect = 6.7
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTE 189
P+ PPPPPPP + E
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 27.3 bits (61), Expect = 8.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 150 ATWISPSGRNSDPSPTPPPPPPPPPP 175
AT + + + P PPPPPP
Sbjct: 255 ATRLPAPPQPPEEEPPPPPPPPEDDD 280
>gnl|CDD|152790 pfam12355, Dscam_C, Down syndrome cell adhesion molecule C
terminal. This domain family is found in eukaryotes,
and is approximately 120 amino acids in length. The
family is found in association with pfam00047,
pfam07679, pfam00041. The Down syndrome cell adhesion
molecule (Dscam) belongs to a family of cell membrane
molecules involved in the differentiation of the nervous
system. This is the C terminal cytoplasmic tail region
of Dscam.
Length = 125
Score = 29.4 bits (65), Expect = 0.83
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 156 SGRNSDPSPTPPPPPPPP 173
S RN + +P PPPPPP
Sbjct: 54 SARNIPGNGSPEPPPPPP 71
>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase.
Length = 667
Score = 30.3 bits (68), Expect = 0.84
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 166 PPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVS 209
PPPP PPP S TMS L +K + P +
Sbjct: 3 PPPPQPPPSLFPTSKPTTMSPRLSLSIKSQSATATDKQPLPNSN 46
Score = 29.6 bits (66), Expect = 1.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 167 PPPPPPPPPLRASALQTMSIPTELKLKPP 195
PPPPP PPP + ++ L L
Sbjct: 2 PPPPPQPPPSLFPTSKPTTMSPRLSLSIK 30
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 30.3 bits (68), Expect = 0.92
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 7/23 (30%)
Query: 162 PSPTPPPP-------PPPPPPLR 177
P P PPPP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.9 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 162 PSPTPPPPPPPP---PP 175
P PPPPPPPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
Score = 28.4 bits (63), Expect = 4.7
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 8/27 (29%)
Query: 155 PSGRNSDPSPTPP-------PPPPPPP 174
P G N P P PP PPPPPPP
Sbjct: 5 PPG-NPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.0 bits (62), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 161 DPSPTPPPPPPPPPPLRASALQTMSIPTELKL 192
+P PPPPPPP ++ + + +SI ++
Sbjct: 19 EPPSQPPPPPPPGVNVKKRSRKQLSIVGDILG 50
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 162 PSPTPPPPPPPPPPLRAS 179
P+P PP P PPP S
Sbjct: 8 PAPAPPAPAPPPAAPPVS 25
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMS 185
+P PPP P PP P A +S
Sbjct: 2 AAPVPPPAPAPPAPAPPPAAPPVS 25
Score = 27.7 bits (62), Expect = 2.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 161 DPSPTPPPPPPPPPPLRASA 180
P P P P PP P P A+
Sbjct: 3 APVPPPAPAPPAPAPPPAAP 22
Score = 25.8 bits (57), Expect = 8.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 162 PSPTPPPPPPPPPPLRAS 179
P+P P PPP PP+ S
Sbjct: 10 PAPPAPAPPPAAPPVSLS 27
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP 175
P G S +P PP PPPPPP
Sbjct: 161 PMGPPSPWNPRFPPGPPPPPP 181
Score = 27.3 bits (60), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 162 PSPTPPPPP--PPPPPL 176
P P P PP PPPPP+
Sbjct: 201 PPPFPLGPPMIPPPPPM 217
>gnl|CDD|217197 pfam02711, Pap_E4, E4 protein. This is is a family of
Papillomavirus proteins, E4, coded for by ORF4. A splice
variant, E1--E4, exists but neither the function of E4
or E1--E4 is known.
Length = 95
Score = 28.0 bits (63), Expect = 1.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 162 PSPTPPPPPPPPPPLRA 178
+ T PP PPPPPP A
Sbjct: 17 HTYTTPPRPPPPPPPWA 33
Score = 26.5 bits (59), Expect = 5.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 161 DPSPTPPPPPPPPPP 175
TPP PPPPPPP
Sbjct: 17 HTYTTPPRPPPPPPP 31
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIP 187
P P P P PP P A +
Sbjct: 127 PVPPVPLPDPPAFPSTLPANAAAAAA 152
Score = 27.5 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 153 ISPSGRNSDPSPTPPPPPPP--PPPLRASALQ 182
ISP+ P P P PP P P A+A
Sbjct: 121 ISPATSPVPPVPLPDPPAFPSTLPANAAAAAA 152
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 29.6 bits (67), Expect = 1.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 102 LSLLLDAYLVVESLADLILDIRSLPGTARGATFCVPTRMINFRNKTQHATWI 153
L+ LLD L E DL + +L A A F R I NK + A ++
Sbjct: 467 LAALLDKTLKKEWANDLDQ-LINLEKYADDAAFRQQYREIKQANKVRLAEFV 517
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.5 bits (66), Expect = 1.6
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKP 194
S P+P PP PL S + + KP
Sbjct: 426 SAPTPEQQPPVARSAPLPPSPQAS-APRNVASGKP 459
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 148 QHATWISPSGRNSDPSPTPPPPPPPPPPLRASA 180
Q AT I P+ P PPPP P P
Sbjct: 152 QVATLILPADVAWSEGGPPAPPPPAPAPAAVDP 184
>gnl|CDD|177445 PHA02662, PHA02662, ORF131 putative membrane protein; Provisional.
Length = 226
Score = 28.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 162 PSPTPPPPPPPPPPLRAS 179
P TPP PP PP P A+
Sbjct: 2 PPRTPPTPPRPPEPTPAA 19
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 29.6 bits (66), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 146 KTQHATWISPSGRNSDPSPTPPPPPPPPP 174
++Q T PS + DP+P P P P P P
Sbjct: 914 RSQEVT--PPSPPDPDPTPDPDPTPDPDP 940
>gnl|CDD|223435 COG0358, DnaG, DNA primase (bacterial type) [DNA replication,
recombination, and repair].
Length = 568
Score = 29.4 bits (66), Expect = 2.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Query: 57 FRIGLPN-IASNGLSPVEEADLKVSWVALKRADLKV---------GWVALKRALLLSLLL 106
+ G+ N +AS G + EE L R KV G A KRAL L L L
Sbjct: 263 HKAGIKNAVASLGTALTEEHI-----KLLSRGKKKVILCFDGDRAGRKAAKRALQLVLPL 317
Query: 107 DA 108
D
Sbjct: 318 DF 319
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 29.2 bits (66), Expect = 2.3
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRASALQ 182
PS + P+ P P P A A
Sbjct: 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPA 426
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 29.1 bits (65), Expect = 2.4
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCL 197
+ S PPPPP P P L+ S P L+ L
Sbjct: 43 DETSMAPPPPPSPLPLLKVS-------PNSLQYPAGYL 73
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 29.0 bits (65), Expect = 2.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 154 SPSGRNSDPSPTPPP------PPPPPPPLRASALQT 183
SP+ PPP PPP P P + L+
Sbjct: 105 SPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140
Score = 29.0 bits (65), Expect = 2.9
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 153 ISPSGRNSDPSPTPPPPPPPPPPLRASA 180
G + SP+P PPPP P
Sbjct: 340 AVSPGPSPSRSPSPSRPPPPADPSSPRK 367
Score = 28.2 bits (63), Expect = 4.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASALQTM 184
+P G +S P P PPP PPP A L M
Sbjct: 107 TPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137
Score = 27.8 bits (62), Expect = 6.6
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASA 180
R+ PS PPP P P R
Sbjct: 345 PSPSRSPSPSRPPPPADPSSPRKRPRP 371
Score = 27.4 bits (61), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 153 ISPSGRNSDPSPTPPPPPPPPPP 175
+ G + P P+ P PPPP PP
Sbjct: 100 PAREGSPTPPGPSSPDPPPPTPP 122
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 29.0 bits (65), Expect = 2.6
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 166 PPPPPPPPPPLRASALQTMSIPTELKLKPP 195
PP P P P L A A SI + P
Sbjct: 60 PPAPAPLPAALVAPAPAAASIAAPAAVPAP 89
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 2.6
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 145 NKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSI--PTELKLKPPCLSLLRY 202
Q + + S S S P P A T+S+ P + + PP +
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447
Query: 203 VMDPKVSRFQVSVSELRSETL 223
++ VS++ S
Sbjct: 448 RPAQFKEEKKIPVSKVSSLGP 468
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 28.6 bits (64), Expect = 2.8
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASA-LQTMSIPTELKLKPPCLSLLR 201
SPS ++ P P PPPP S Q + + C+S L
Sbjct: 17 SPSSSSNRHHHHHTPSPSPPPPSSPSTPPQILLACNATRFPDTCVSSLS 65
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.9 bits (65), Expect = 2.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 162 PSPTPPPPPPPPPPLRASA 180
P+P P PP PP R++
Sbjct: 421 PAPAPAPPAAAAPPARSAD 439
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 28.5 bits (64), Expect = 3.2
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 162 PSPTPPPPPPPPPPL 176
PSPT P P P
Sbjct: 86 PSPTTVATPSPSPTP 100
>gnl|CDD|225529 COG2982, AsmA, Uncharacterized protein involved in outer membrane
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 648
Score = 28.6 bits (64), Expect = 3.7
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 59 IGLPNIASNGLSPVEEADLKVSWVALKRADLKVGWVALKRALL 101
+ P A L E ++ + L L++ + L ++
Sbjct: 73 LSNPGAAEPHLVSAERVGASLALLPLLSKQLQISQIRLDGPVI 115
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 28.1 bits (63), Expect = 4.1
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 143 FRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPC 196
HA+ S S S P + P P P +S L T SI KL P
Sbjct: 7 TSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
>gnl|CDD|233989 TIGR02739, TraF, type-F conjugative transfer system pilin assembly
protein TraF. This protein is part of a large group of
proteins involved in conjugative transfer of plasmid
DNA, specifically the F-type system. This protein has
been predicted to contain a thioredoxin fold and has
been shown to be localized to the periplasm. Unlike the
related protein TrbB (TIGR02738), TraF does not contain
a conserved pair of cysteines and has been shown not to
function as a thiol disulfide isomerase by
complementation of an Ecoli DsbA defect. The protein is
believed to be involved in pilin assembly. Even more
closely related than TrbB is a clade of genes
(TIGR02740) which do contain the CXXC motif, but it is
unclear whether these genes are involved in type-F
conjugation systems per se.
Length = 256
Score = 27.7 bits (62), Expect = 4.5
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 162 PSPTPPPPPPPPPPLRASALQTM 184
P P P P P S + M
Sbjct: 41 KKPKPVPLQPSQEPPPLSPTEQM 63
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRAS 179
S + S P+P P P P P RAS
Sbjct: 107 SAAPVASAPAPAPSPQSPKPASRRAS 132
>gnl|CDD|234764 PRK00442, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 26.8 bits (59), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 160 SDPSPTPPPPPPPPPPLRASA 180
P+ P PP P PP++ +A
Sbjct: 50 DKPAEQPAPPAQPVPPVQNTA 70
Score = 26.4 bits (58), Expect = 5.8
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 164 PTPPPPPPPPPPLRASALQTMSIP 187
P P PP P ++ P
Sbjct: 52 PAEQPAPPAQPVPPVQNTAPLNQP 75
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 27.7 bits (62), Expect = 4.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 147 TQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIP 187
+ + P S +P+PPP P PPP + +S
Sbjct: 217 SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTA 257
Score = 27.7 bits (62), Expect = 5.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPL 176
PS SP+ PP P
Sbjct: 197 FPSPPEDPSSPSDSSLPPAPSSF 219
Score = 27.3 bits (61), Expect = 6.9
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIP 187
S +S P P PP + S P
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237
>gnl|CDD|217044 pfam02451, Nodulin, Nodulin. Nodulin is a plant protein of unknown
function. It is induced during nodulation in legume
roots after rhizobium infection.
Length = 177
Score = 27.3 bits (60), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 154 SPSGRNSDPS------PTPPPPPPPPPPL 176
S G PS P+ PPPP PP+
Sbjct: 149 SDLGACLTPSMNQCVYPSGAPPPPGSPPI 177
>gnl|CDD|236511 PRK09429, mepA, penicillin-insensitive murein endopeptidase;
Reviewed.
Length = 275
Score = 27.5 bits (62), Expect = 5.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 162 PSPTPPPPPPPPPPL 176
P PT P P PPPPL
Sbjct: 250 PKPTTKPKPKPPPPL 264
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 28.0 bits (62), Expect = 5.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 157 GRNSDPSPTPPPPPPPPPP 175
+ +P PP PPP P
Sbjct: 182 EAGAPATPAPPLHPPPAPH 200
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 27.2 bits (61), Expect = 6.1
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 161 DPSPTPPPPPPPPPPLRASALQTM 184
+P P P P SA + M
Sbjct: 10 EPKEPEKAPAPAAPAQSPSATEQM 33
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 27.5 bits (61), Expect = 6.1
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 135 CVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPL 176
CV R N+ + +S + P P PPP
Sbjct: 162 CVGRRTPGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAP 203
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 27.5 bits (61), Expect = 6.1
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 164 PTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRFQVSVSEL 218
P PP PPP S IP++ P +++ P+ Q S SEL
Sbjct: 117 EPSPGQPPAPPPSVLSGKNANCIPSQKNA--PSIAITSTGGSPRRVIVQASTSEL 169
>gnl|CDD|205441 pfam13261, DUF4052, Protein of unknown function (DUF4052). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 220 amino acids in
length.
Length = 217
Score = 27.4 bits (61), Expect = 6.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 35 NIPHIFVTFGASVSTFFIKVRVFRI 59
N P I + F VSTF I+ VFR+
Sbjct: 48 NNPSIAIIFFIVVSTFLIQDDVFRL 72
>gnl|CDD|147144 pfam04834, Adeno_E3_14_5, Early E3 14.5 kDa protein. The E3B 14.5
kDa was first identified in Human adenovirus type 5. It
is an integral membrane protein oriented with its C
terminus in the cytoplasm. It functions to down-regulate
the epidermal growth factor receptor and prevent tumour
necrosis factor cytolysis. It achieves this through the
interaction with E3 10.4 kDa protein.
Length = 97
Score = 26.3 bits (58), Expect = 6.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 149 HATWISPSGRN----SDPSPTPPPPPPPPPPLRASALQTMS 185
W +P+ + DP P PPPPP + A +S
Sbjct: 48 DFGWNAPNALDLPRYPDPQHIPLQQPPPPPEPQPRAPSAIS 88
>gnl|CDD|219931 pfam08609, Fes1, Nucleotide exchange factor Fes1. Fes1 is a
cytosolic homologue of Sls1, an ER protein which has
nucleotide exchange factor activity. Fes1 in yeast has
been shown to bind to the molecular chaperone Hsp70 and
has adenyl-nucleotide exchange factor activity.
Length = 87
Score = 25.8 bits (57), Expect = 6.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 159 NSDPSPTPPPPPPPPPPLRASALQTM 184
NS + + PP P P L L +
Sbjct: 15 NSTGAGSSPPSIPQPRSLDPEMLDQL 40
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 27.6 bits (61), Expect = 7.3
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 140 MINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPP---PLRASALQTMSIPTELKLKP 194
M++ + S P+PTP PP P ASA++ S E
Sbjct: 73 MVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 27.3 bits (60), Expect = 7.4
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 154 SPSGRNSDPSPTPPPPPPPPP 174
+ RN D + PP P
Sbjct: 6 NRKNRNQDTQSSSEPPKPTSS 26
>gnl|CDD|218815 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST). This
family consists of several bacterial
Arylsulfotransferase proteins. Arylsulfotransferase
(ASST) transfers a sulfate group from phenolic sulfate
esters to a phenolic acceptor substrate.
Length = 459
Score = 27.3 bits (61), Expect = 7.5
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 5/33 (15%)
Query: 147 TQHATWISPSGR-----NSDPSPTPPPPPPPPP 174
QH + P+G N D P
Sbjct: 332 GQHTAVLIPNGELMVFDNGDGRSLEQPALLSMK 364
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 26.2 bits (58), Expect = 7.8
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 147 TQHATWISPSGRNSDPSPTPPPPPPPPP 174
+ +P NS P PPPP P
Sbjct: 80 APPGVYPTPPPPNSGYMADPQEPPPPYP 107
>gnl|CDD|222993 PHA03127, PHA03127, dUTPase; Provisional.
Length = 322
Score = 27.3 bits (60), Expect = 7.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 152 WISPSGRNSDPSPTPPPPPPPPP 174
W+ + +P PT P PP P
Sbjct: 268 WLPTELNDREPFPTTPRAAPPAP 290
>gnl|CDD|111097 pfam02166, Androgen_recep, Androgen receptor.
Length = 423
Score = 27.4 bits (60), Expect = 8.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 166 PPPPPPPPPP 175
PPPPPPPP P
Sbjct: 348 PPPPPPPPHP 357
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 27.2 bits (61), Expect = 8.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 143 FRNKTQHATWISP 155
R K + A W+SP
Sbjct: 392 LRKKGKRAVWVSP 404
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 27.1 bits (60), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 160 SDPSPTPPPPPPPPPPLRAS 179
S P+ +PPP P PPP +A
Sbjct: 174 SAPASSPPPTPASPPPAKAP 193
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 27.2 bits (61), Expect = 8.3
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 159 NSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRFQVSVSEL 218
++PS PPP P P L L+ + +K LR +D + +S++
Sbjct: 259 AAEPSGDPPPLPEDAPVL----LEVEDLRVWFPIKG---GFLRRTVDHLRAVDGISLTLR 311
Query: 219 RSETL 223
R +TL
Sbjct: 312 RGQTL 316
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 27.2 bits (61), Expect = 8.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 145 NKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
P + + +P P PPPPPP +AS+ IP + PP
Sbjct: 529 KSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Score = 27.2 bits (61), Expect = 9.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 150 ATWISPSGRNSDPSPTPPPPPPPPPPLRASAL 181
AT S + P+ + PPPP P P +
Sbjct: 559 ATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 27.1 bits (60), Expect = 8.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 161 DPSPTPPPPPPPPPP 175
DPS P PPPP
Sbjct: 89 DPSAGEPAPPPPHAR 103
>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II;
Provisional.
Length = 445
Score = 27.1 bits (60), Expect = 8.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 168 PPPPPPPPLRASALQT 183
PPPPPPPP+ A ++T
Sbjct: 130 PPPPPPPPVVAKRVET 145
>gnl|CDD|236835 PRK11069, recC, exonuclease V subunit gamma; Provisional.
Length = 1122
Score = 27.2 bits (61), Expect = 9.2
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 3 FSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIP 37
F TE L LI + ++ +E + +P
Sbjct: 599 FLPDAETEAALALIEQQWQAIIEEGLDAQYGDAVP 633
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 27.1 bits (60), Expect = 10.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPP 175
PS + +P P PPPP
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKE 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,235,427
Number of extensions: 1175244
Number of successful extensions: 5347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4452
Number of HSP's successfully gapped: 292
Length of query: 233
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 139
Effective length of database: 6,768,326
Effective search space: 940797314
Effective search space used: 940797314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)