RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5425
(233 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 43/196 (21%)
Query: 31 HFDQNIPHIFVTFGASVSTFFIKVRVFRIGLPNIASNGLSPVEEADLKVSWVALKRADLK 90
F+ + + T V+ F I L + S L+P E L + ++ + DL
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 91 VGWVALKRALLLSLLLDAYLVVESLADLILDIRSLPGTARGATFCVPTRMINFR--NKTQ 148
+ L + + ++ ES+ D N++ N +
Sbjct: 320 ------REVLTTNPRRLS-IIAESIRDG------------------LATWDNWKHVNCDK 354
Query: 149 HATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSI-PTELKLKPPCLSLLRYVMDPK 207
T I S + P R +S+ P + LSL+ + +
Sbjct: 355 LTTIIESSLNVLE-----------PAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 208 VSRFQVSVSELRSETL 223
V V++L +L
Sbjct: 403 DV--MVVVNKLHKYSL 416
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 38/149 (25%)
Query: 95 ALKRALLLSLLLDAYLVVE--------SLA-DLILDIRSLPGTARGATFCVPTRM----- 140
L++ALL L ++++ +A D+ L + V +M
Sbjct: 139 KLRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYK------------VQCKMDFKIF 185
Query: 141 -INFRNKTQHATWISPSGR---NSDPSPTPPPPPPPPPPLRASALQT-MSIPTELKLKPP 195
+N +N T + + DP+ T LR ++Q + + K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 196 CLSLLRYVMDPKVSR-FQVSVSELRSETL 223
CL +L V + K F L + L
Sbjct: 246 CLLVLLNVQNAKAWNAF-----NLSCKIL 269
Score = 32.9 bits (74), Expect = 0.10
Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 54/193 (27%)
Query: 8 NTEETLTLIRKSLRSATQ----EVEGTHFDQNIPHIFVTFGASVSTF-----FIKVRVFR 58
+E +L+ K L Q EV T+ P S+ K V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLSIIAESIRDGLATWDNWK-HVNC 352
Query: 59 IGLPNIASNGLSPVEEADLKVSWVALK--RAD-------LKVGWVALKRA---LLLSLLL 106
L I + L+ +E A+ + + L L + W + ++ ++++ L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 107 DAYLVVE-------SLADLILDIRSLPGTARGATFCVPTRMINFRNKTQ-HATWIS--PS 156
LV + S+ + L+++ + N+ H + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK-----------------VKLENEYALHRSIVDHYNI 455
Query: 157 GRNSDPSPTPPPP 169
+ D PP
Sbjct: 456 PKTFDSDDLIPPY 468
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 51/160 (31%)
Query: 3 FSVIGNTEETLTLIRKSLRSATQEVEGTHFDQN-IPH-----IFVTFGASVSTFFIKVRV 56
V G + +L + +LR A + DQ+ IP F
Sbjct: 377 LVVSGPPQ-SLYGLNLTLRKAKAP---SGLDQSRIPFSERKLKFSN-------------R 419
Query: 57 FRIGLPNIA----SNGLSPVEE---ADLKVSWVALKRADLKV------GWVALKRALLLS 103
F LP +A S+ L P + DL + V+ D+++ L R L S
Sbjct: 420 F---LP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGS 474
Query: 104 LLLDAYLVVESLADLILDIRSLPGTARGATFCVPTRMINF 143
+ E + D I+ LP T T +++F
Sbjct: 475 I-------SERIVDCII---RLPVKWETTTQFKATHILDF 504
Score = 27.7 bits (61), Expect = 4.0
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 32/122 (26%)
Query: 102 LSLLLDAYLVVESLADLILDIRS-LPGTARGATFCVP--TRMINFRNKTQHATWISPSGR 158
L L Y V+ + DLI L R T+ +N W+
Sbjct: 173 LRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE------WLE---- 220
Query: 159 NSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRFQVSVSEL 218
+PS T P S +S P + + + L YV+ K+ + EL
Sbjct: 221 --NPSNT------PDKDYLLSI--PISCPL-IGV----IQLAHYVVTAKLL--GFTPGEL 263
Query: 219 RS 220
RS
Sbjct: 264 RS 265
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 31.0 bits (69), Expect = 0.30
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
P+G +D PPPPPP + + + E
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAA 59
Score = 29.0 bits (64), Expect = 1.2
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
+ P P PP P ++A T + P
Sbjct: 23 MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASP 64
Score = 28.7 bits (63), Expect = 1.9
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
+ R P P P P P A+A + P
Sbjct: 24 TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65
>1ej6_D Sigma2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_X
Length = 418
Score = 29.9 bits (66), Expect = 0.63
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 145 NKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPT 188
+ W +P+ +P P P
Sbjct: 89 IRFLRLVWSAPTLDGLVVAPPQVLAQPALQAQADRVYDCDDYPF 132
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo
sapiens} SCOP: a.26.1.1
Length = 187
Score = 29.4 bits (65), Expect = 0.67
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 143 FRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRAS 179
RN + + ++P+ PP P AS
Sbjct: 121 LRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTPAS 157
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 28.2 bits (62), Expect = 0.91
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 142 NFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPP 175
+ R + + + S P TP PP PPP
Sbjct: 38 HKREAGKESCFCYFDCSKSPPGATPAPPGAAPPP 71
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 27.5 bits (61), Expect = 1.2
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRA 178
SG + +P R
Sbjct: 2 SSGSSGVRAPVTKVHGGAGSAQRM 25
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 27.9 bits (62), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP--LRASALQTMSI 186
SG + P+ P P PP ++A AL ++
Sbjct: 2 SSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAV 35
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 158 RNSDPSPTPPPPPPPPPPLRASALQTMSIPT 188
+ PPPPPPPPPP + + P
Sbjct: 397 QQQQQQQQPPPPPPPPPPPQLPQPPPQAQPL 427
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 28.6 bits (64), Expect = 1.6
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 160 SDPSP-----TPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
D S T P P PP + S +L +
Sbjct: 278 GDYSKIEIFQTLPVREPSPPSIHGQPSSGKSF--KLSITKQ 316
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 28.5 bits (64), Expect = 1.7
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 138 TRMINFRNKTQHATWI----SPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIP 187
T ++ N WI + + PT P P + ++Q P
Sbjct: 235 TSTWSYLN------WIASKIGSTAVHMIQLPTASPASTPGAQASSGSVQPSVRP 282
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQ----TMSIPTELKLK 193
+ P P P+ A A+Q T L L+
Sbjct: 1 GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALE 38
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 28.7 bits (64), Expect = 1.8
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 140 MINFRNKTQHATWISPSGRNSDPSPTPPPPP-PPPPPLRASALQTMSIPTELKLKP 194
IN T + + + DP P P L+ + + L++K
Sbjct: 4 SINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFHATLEIKE 59
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 28.5 bits (63), Expect = 1.9
Identities = 13/62 (20%), Positives = 15/62 (24%)
Query: 126 PGTARGATFCVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMS 185
G A TQ+ PP PPP +R M
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 186 IP 187
IP
Sbjct: 205 IP 206
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 27.7 bits (61), Expect = 2.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 151 TWISPSGRNSDPSPTPPPPPPPPPPLRASA 180
++ + S P P+ PP PP
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPP 134
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.5 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 153 ISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRF 211
+S S S P P P P PPP PP A P + P ++ + K +
Sbjct: 2 LSNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFH-VKSGLQIKKNAI 59
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 28.3 bits (62), Expect = 2.2
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPK 207
P P PP P PP P T SI E K L ++ +P
Sbjct: 49 PPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPN 94
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue,
neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP:
a.74.1.1 PDB: 1unh_D* 1ung_D*
Length = 208
Score = 28.1 bits (62), Expect = 2.2
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 165 TPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRFQVSVSEL 218
PP PP PP + S QT + K P + PK Q S SEL
Sbjct: 2 PPPAQPPAPPASQLSGSQTGGSSSVKKAPHP---AVTSAGTPKRVIVQASTSEL 52
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 2.2
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 32/149 (21%)
Query: 99 ALLLSLLLDAYLVVES-----LADL------ILDIRSLPGTARGATFCVPTRMINFRNKT 147
A L LL +V +ADL + +++ R + ++
Sbjct: 703 AFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKE--------LVETSEV 754
Query: 148 QHATWISPSGRNS---DPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVM 204
+ A I + + S P L + ++K + L ++
Sbjct: 755 RKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLL 814
Query: 205 DPKVSRFQVSV--SEL----RSETLERFE 227
D R V +E+ + T R+E
Sbjct: 815 DL--ERVIVVTGFAEVGPWGSART--RWE 839
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 26.2 bits (57), Expect = 2.8
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 131 GATFCVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPP 175
G C+P + A I+ P P PP P P P
Sbjct: 24 GGYLCLP----------RSAAVINDLHGEGPPPPVPPAQHPNPCP 58
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 27.7 bits (61), Expect = 2.9
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 162 PSPTPPPPPPPPPPLRASALQ 182
P P PP PP S LQ
Sbjct: 22 YIPQPQPPAPPRRRRGPSQLQ 42
Score = 26.9 bits (59), Expect = 4.9
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 157 GRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSL 199
GR P+P P P PP + S +L L+L
Sbjct: 11 GRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALAL 53
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.5 bits (60), Expect = 3.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTEL 190
P+ P +A T +IPT +
Sbjct: 186 PTAFASTMPTVTLTPTPTATTTTTIPTAV 214
Score = 26.4 bits (57), Expect = 9.0
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTELKLK 193
S P P P + ++PT L+
Sbjct: 190 ASTMPTVTLTPTPTATTTTTIPTAVPTTESLE 221
>3evs_C Bone morphogenetic protein receptor type-1B; ligand-receptor
complex, cystin-knot ligand, three-finger to (receptor);
2.10A {Mus musculus}
Length = 119
Score = 26.7 bits (58), Expect = 3.4
Identities = 6/17 (35%), Positives = 6/17 (35%)
Query: 159 NSDPSPTPPPPPPPPPP 175
N D PT PP
Sbjct: 96 NKDLHPTLPPLKDRDFV 112
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics
consortium, SGC, unknown function; 2.60A
{Cryptosporidium parvum}
Length = 202
Score = 27.3 bits (60), Expect = 3.5
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 146 KTQHATWISPSGRNSDPSPTPPPPPPPPPPLRAS 179
H++ + P G S + +
Sbjct: 7 HHHHSSGLVPRGSKSQIYLKKEKKMKAARQVVTN 40
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 27.8 bits (61), Expect = 3.6
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 2 TFSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGA--------SVSTFFIK 53
T IG T + + L +A ++ E +F +P V F S F +
Sbjct: 486 TTYGIGMTYHCYNEMLRMLVAAGKDSEAAYFRSMLPFHMVRFARINQIINEDLHSVFSLP 545
Query: 54 VRVFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVGWVALKRALLL---SLLLDAYL 110
+F LP++ + + L VSW++L W A R+ + +L+
Sbjct: 546 DDMFNALLPDLIAGAHQNADPVVLDVSWISL--------WFAFNRSFEPTHRNEMLEIAP 597
Query: 111 VVES-----LADLILDIRSL 125
++ES L+ + +D+R L
Sbjct: 598 LIESVYASELSVMKVDMRHL 617
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 26.8 bits (58), Expect = 3.6
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 158 RNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
+N P P P P + E + PP
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 147 TQHATWI-----SPSGRNSDPSPTPPPPPPPPPP 175
WI + S R+ + +P P P PPP
Sbjct: 136 NLAKFWICKKSAASSSRDEEQFLSPAPATPNPPP 169
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 27.8 bits (61), Expect = 3.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 157 GRNSDPSPTPPPPPPPPPPLRASALQTMSIP 187
G + PP PPPP++ A + P
Sbjct: 1 GAMYSGAGPALAPPAPPPPIQGYAFKPPPRP 31
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 27.6 bits (61), Expect = 3.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 150 ATWISPSGRNSDPSPTPPPPPPPPPPLRAS 179
+T + S PPPPPLR+
Sbjct: 315 STVFTGSEFELRRQACGRTRAPPPPPLRSG 344
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage,
membrane-containing bacteriophage, virus virion,
membrane; 7.00A {Pseudoalteromonas phage PM2}
Length = 335
Score = 27.4 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 3 FSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGASVSTFF 51
F + E T TLI+ + +T G FD N + VT A V F
Sbjct: 238 FYITEGDETTDTLIKYTSYGSTGSHSGYDFDDNTLDVMVTLSAGVHRVF 286
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 27.1 bits (60), Expect = 4.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 147 TQHATWI-----SPSGRNSDPSPTPPPPPPPPPP 175
WI + R+ + +P P P PPP
Sbjct: 141 NLAKFWICKKSAASCSRDEEQFLSPAPATPNPPP 174
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 27.3 bits (61), Expect = 4.7
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 153 ISPSGRNSDPSPTPPPPPPPPPPLR 177
++P R P PP
Sbjct: 6 VNPETRAPAAPGAPELREPPVAGGG 30
>2vve_A Spike protein P1; viral stem-receptor binding domain, viral
protein; 1.77A {Pseudoalteromonas phage PM2} PDB: 2vvd_A
Length = 254
Score = 27.0 bits (59), Expect = 5.7
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 3 FSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGASVSTFF 51
F + E T TLI+ + +T G FD N + VT A V F
Sbjct: 157 FYITEGDETTDTLIKYTSYGSTGSHSGYDFDDNTLDVMVTLSAGVHRVF 205
>3ml3_A Outer membrane protein ICSA autotransporter; beta helix, beta
sandwich, protein transport; 2.00A {Shigella flexneri}
Length = 189
Score = 26.6 bits (58), Expect = 5.7
Identities = 2/20 (10%), Positives = 3/20 (15%)
Query: 160 SDPSPTPPPPPPPPPPLRAS 179
S + S
Sbjct: 168 SQMDNQESKQMSNQESTQMS 187
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 26.7 bits (58), Expect = 5.8
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP 175
+G + P P PP
Sbjct: 13 NTGGSRYPGQGSPGGNRYPPQ 33
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus
musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB:
1kdh_A* 1kej_A*
Length = 381
Score = 26.8 bits (58), Expect = 6.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 159 NSDPSPTPPPPPPPPPPLR 177
NS PSP P P P ++
Sbjct: 1 NSSPSPVPGSQNVPAPAVK 19
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 26.5 bits (57), Expect = 6.9
Identities = 10/43 (23%), Positives = 12/43 (27%)
Query: 135 CVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLR 177
CV R + N T S + P PP L
Sbjct: 140 CVGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALS 182
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 26.8 bits (58), Expect = 7.1
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKP-PCLSLLRYVMDP 206
SP+ R + + PPP AS+ + + K P + R + +
Sbjct: 30 SPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTIHFKESPFYKIQRLIPEL 83
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 26.1 bits (57), Expect = 7.6
Identities = 4/30 (13%), Positives = 6/30 (20%)
Query: 161 DPSPTPPPPPPPPPPLRASALQTMSIPTEL 190
+ T P P + E
Sbjct: 126 KVNSTTTKPVLRTPSPVHPTGTSQPQRPED 155
>1th1_C APC protein, adenomatous polyposis coli protein; protein-protein
complex, cell adhesion/antitumor protein complex; HET:
TPO SEP; 2.50A {Homo sapiens}
Length = 179
Score = 26.2 bits (56), Expect = 8.0
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 153 ISPSGRNSDPSPTPPPPP---PPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVS 209
ISPS P T PP PPPPP A + + + + ++ V
Sbjct: 57 ISPSDLPDSPGQTMPPSRSKTPPPPPQTAQTKREVPKNKAPTAEKRESGPKQAAVNAAVQ 116
Query: 210 RFQVSVSELRSETLERFET 228
R QV +TL F T
Sbjct: 117 RVQVLPDA---DTLLHFAT 132
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 26.5 bits (58), Expect = 8.1
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 134 FCVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLK 193
C+ + RN + + + PS +P P P + LQ S + + L+
Sbjct: 158 LCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLE 214
>3o2k_A Brevianamide F prenyltransferase; PT barrel; HET: DST QRP MES;
2.40A {Aspergillus fumigatus} PDB: 3o24_A*
Length = 474
Score = 26.8 bits (58), Expect = 8.3
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDP 206
P P P S + +P E +L+R +DP
Sbjct: 75 PYPQRDPETGIIATQWRSGMVLTGLPIEFSNN-VARALIRIGVDP 118
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 26.6 bits (59), Expect = 8.7
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 163 SPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSLLRYVMDPKVSRFQVSVSELR--S 220
P P P P + + + T ++ P LSLL +V + S L S
Sbjct: 39 PPPSPKAPEPSKRVLKEKQAPLFVDTAVEGTLPPLSLLD---PAEVKQKSYSPESLEAMS 95
Query: 221 ETLER 225
LE
Sbjct: 96 RLLEI 100
>3qns_A DYP peroxidase; lignan, heme, enzyme, oxidoreductase; HET: HEM SO4;
1.40A {Rhodococcus jostii RHA1} PDB: 3qnr_A* 3ved_A*
3vec_A* 3vef_A* 3vee_A* 3veg_A*
Length = 353
Score = 26.5 bits (58), Expect = 9.2
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 131 GATFCVPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRAS 179
G F VP+R + + ++ +P P P P S
Sbjct: 302 GTLFFVPSRDVL--------ESLGDEPAGAESAPEDPVEPAAAGPYDLS 342
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 26.4 bits (58), Expect = 9.6
Identities = 4/45 (8%), Positives = 14/45 (31%)
Query: 155 PSGRNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPPCLSL 199
++ +P P + + + S+ + +S+
Sbjct: 179 GDEQHKLADFSPWGGKAPEIAVTGFSYNSPSMRLAGERNFKPVSI 223
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 26.5 bits (57), Expect = 9.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPPLRASA 180
+P+ S+ P PPP +
Sbjct: 13 NPNVNASNMYGPPQNMSLPPPQTQTIQ 39
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 26.4 bits (58), Expect = 9.8
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 156 SGRNSDPSPTPPPPPPPPPPLRA 178
+GR D P P
Sbjct: 277 NGRYVDGLPEDDPVLKTYDSYGR 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,686,321
Number of extensions: 224354
Number of successful extensions: 2654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 159
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)