RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5425
(233 letters)
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate
dehydrogenase, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 203
Score = 31.5 bits (71), Expect = 0.054
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 28 EGTHFDQNIPHIFVTFGAS 46
+G F Q+ HIF+ GAS
Sbjct: 11 QGDAFHQSDTHIFIIMGAS 29
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 29.4 bits (66), Expect = 0.16
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 158 RNSDPSPTPPPPPPPPPPLRASALQTMSIPTELKLKPP 195
+N P P P P + E + PP
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
Score = 26.0 bits (57), Expect = 2.3
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 155 PSGRNSDPSPTPPPPPPPPPP 175
T PPPPPPP P
Sbjct: 100 APVPTPICPTTTPPPPPPPSP 120
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 29.0 bits (65), Expect = 0.47
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 2 TFSVIGNTEETLTLIRKSLRSATQEVEGTHFDQNIPHIFVTFGA--------SVSTFFIK 53
T IG T + + L +A ++ E +F +P V F S F +
Sbjct: 430 TTYGIGMTYHCYNEMLRMLVAAGKDSEAAYFRSMLPFHMVRFARINQIINEDLHSVFSLP 489
Query: 54 VRVFRIGLPNIASNGLSPVEEADLKVSWVALKRADLKVGWVALKRALLL---SLLLDAYL 110
+F LP++ + + L VSW++L W A R+ + +L+
Sbjct: 490 DDMFNALLPDLIAGAHQNADPVVLDVSWISL--------WFAFNRSFEPTHRNEMLEIAP 541
Query: 111 VVES-----LADLILDIRSL 125
++ES L+ + +D+R L
Sbjct: 542 LIESVYASELSVMKVDMRHL 561
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains
of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 220
Score = 26.8 bits (58), Expect = 2.1
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 15 LIRKSLRSATQEVEGTHFDQ 34
++ ++++SA +VE +F+
Sbjct: 3 MVTRAIKSAQTQVEQQNFEV 22
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 172
Score = 26.2 bits (57), Expect = 2.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 142 NFRNKTQHATWISPSGRNSDPSPTPPPPPPP 172
F N A N+DP+ + P P
Sbjct: 141 TFANGVNSAILRYAGAANADPTTSANPNPAQ 171
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains
of SecA {Bacillus subtilis [TaxId: 1423]}
Length = 210
Score = 26.0 bits (56), Expect = 3.4
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 15 LIRKSLRSATQEVEGTHFDQ 34
++ +++ S+ + VEG +FD
Sbjct: 3 MVSRAVESSQKRVEGNNFDS 22
>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 24.5 bits (52), Expect = 6.3
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 165 TPPPPPPPPPPLRASALQTMSIPTELKLKPPC 196
T P P P R + S+ L+ K P
Sbjct: 6 TLSCEPDIPNPPRIANRTKNSL--TLQWKAPS 35
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 24.9 bits (54), Expect = 6.7
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 142 NFRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRASALQTMS 185
RN QH + + P PL AS L +
Sbjct: 24 GVRNPQQH-----LNAQPQVTMQQPAVHVQGQEPLTASMLASAP 62
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Length = 250
Score = 25.3 bits (54), Expect = 7.3
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 160 SDPSPTPPPPPPPPPPLRASALQTMSIPTEL 190
+ P L + + ++ ++L
Sbjct: 15 REAPDLTLTSATYDPQLSHAVSLSYTLNSQL 45
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 24.7 bits (54), Expect = 7.3
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 162 PSPTPPPPPPPPPPLRASALQTMSIPT 188
P P +A Q + P+
Sbjct: 20 PGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 24.4 bits (53), Expect = 8.2
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 154 SPSGRNSDPSPTPPPPPPPPPP 175
+ + + + T P P P
Sbjct: 23 AQAPATTGAAGTAPTAPQPTAA 44
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 25.0 bits (54), Expect = 8.0
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 143 FRNKTQHATWISPSGRNSDPSPTPPPPPPPPPPLRAS 179
RN + + ++P+ PP P AS
Sbjct: 118 LRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTPAS 154
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 209
Score = 24.8 bits (53), Expect = 9.2
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 136 VPTRMINFRNKTQHATWISPSGRNSDPSPTPPPPPPPPP 174
V TR + ++ + PT PPP P
Sbjct: 151 VGTRARHPNTPPGLTL-LNYLPNSVSKLPTSPPPQTPAW 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 888,558
Number of extensions: 42693
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 32
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)