BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy543
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WWY|A Chain A, Solution Structure Of The Duf1000 Domain Of A
Thioredoxin-Li 1
Length = 171
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 4/158 (2%)
Query: 114 HMDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKI 173
+MDL FI K CE LNESD+H F NCL T+LESD DEQL+++ FNQ VK++S+K
Sbjct: 9 YMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKF 68
Query: 174 KAPKD-KGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDL--DGTPINLRYVKFQNV 230
+ P + +GPK +K+FIN P+++DF+ A ++ Q +ELTE D+ DG + LRYVKFQNV
Sbjct: 69 QGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGI-VPLRYVKFQNV 127
Query: 231 QNLQIFVLDNQTEAETTVITHLALIGSPILTTKMSDFK 268
++ IFV NQ E ETT I++ IG+P+ T M+DFK
Sbjct: 128 NSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFK 165
>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog
Of The C-Terminal Domain Of Human Thioredoxin-Like
Protein
Length = 161
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 6/150 (4%)
Query: 113 GHMDLTSFIMKNQCEALNESDQHPFTNCLNTAETY-----LESDADEQLILSFTFNQSVK 167
G +DL FI + E LN+S H N L LESDADEQL++ FNQ +K
Sbjct: 12 GQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIK 71
Query: 168 IHSLKIKAPKDKGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDGTPINLRYVKF 227
+HS IK P+++GPKT+K F N+ + + F ELTE++L G P+ L+YVKF
Sbjct: 72 LHSFAIKGPEEEGPKTVKFFSNK-EHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKF 130
Query: 228 QNVQNLQIFVLDNQTEAETTVITHLALIGS 257
QNV++L IF+ NQ+ +E T + +AL GS
Sbjct: 131 QNVRSLTIFIEANQSGSEVTKVQKIALYGS 160
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
+ SD F E++ G++L VV FT CGPC RIAP F +S KYP A F +VDV Q Q
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG 65
Query: 66 LAAAQGVSAMPTFIFFRNKI-------PDPNTLEAKIKQY 98
AA +SA PTF FFRNK+ D LE KIKQ+
Sbjct: 66 TAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 2 SIIVINSDAHFHTEMNNCG--TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59
++I ++ F T M N KLV++DFTASWCGPC+ IAPVF + ++K+P A F KVD
Sbjct: 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVD 66
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD+ +D+A A V AMPTF+F ++
Sbjct: 67 VDELKDVAEAYNVEAMPTFLFIKD 90
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%)
Query: 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQG 71
E N KLVV+DFTASWCGPC+ +APVF L++K+PNA F KVDVD+ + +A
Sbjct: 25 MQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFS 84
Query: 72 VSAMPTFIFFRN 83
V AMPTF+F +
Sbjct: 85 VEAMPTFLFMKE 96
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A G+ +PT + F+N
Sbjct: 65 VAPKYGIRGIPTLLLFKN 82
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V +MPTF FF+
Sbjct: 65 VASESEVKSMPTFQFFKK 82
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 49/78 (62%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V MPTF FF+
Sbjct: 65 VASEXEVKCMPTFQFFKK 82
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGV 72
H E KL+VVDFTASWC PC+ IAP+F +L++K+PN F KVDVD+ + +A V
Sbjct: 18 HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNV 77
Query: 73 SAMPTFIFFRN 83
AMPTFIF ++
Sbjct: 78 EAMPTFIFLKD 88
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 49/78 (62%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V A PTF FF+
Sbjct: 65 VASEAEVKATPTFQFFKK 82
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V +MPTF FF+
Sbjct: 65 VASECEVKSMPTFQFFKK 82
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGP + I P F LS KY N F +VDVD +QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQD 64
Query: 66 LAAAQGVSAMPTFIFFR 82
+A+ V +MPTF FF+
Sbjct: 65 VASESEVKSMPTFQFFK 81
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 49/78 (62%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V MPTF FF+
Sbjct: 65 VASECEVKCMPTFQFFKK 82
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQG 71
F ++N G KLVV+DF A+WCGPC+ IAP E+LS+ + F KVDVD+ +D+A
Sbjct: 11 FTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQ 70
Query: 72 VSAMPTFIFFRN 83
++ MPTF+F +N
Sbjct: 71 IACMPTFLFMKN 82
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex
With The Target Protein Basi
Length = 125
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSA 74
E N KLVV+DFTASWCGP + +APVF L++K+PNA F KVDVD+ + +A V A
Sbjct: 31 EEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEA 90
Query: 75 MPTFIFFRN 83
MPTF+F +
Sbjct: 91 MPTFLFMKE 99
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 3 IIVINSDAHFHTEMNNC--GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+I ++ F +M K+V++DFTASWCGPC+ IAPVF + ++K+P A F KVDV
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 75
Query: 61 DQNQDLAAAQGVSAMPTFIFFRN 83
D+ +++A V AMPTF+F ++
Sbjct: 76 DELKEVAEKYNVEAMPTFLFIKD 98
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDV+ QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQD 64
Query: 66 LAAAQGVSAMPTFIFFR 82
+A+ V MPTF FF+
Sbjct: 65 VASECEVKCMPTFQFFK 81
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGP + I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V A PTF FF+
Sbjct: 65 VASEAEVKATPTFQFFKK 82
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V PTF FF+
Sbjct: 65 VASECEVKCTPTFQFFKK 82
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
G KLVVVDF A+WCGPC+ IAP+ E+ + +Y +AAF+K+DVD+ D+A VS+MPT I
Sbjct: 25 GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLI 84
Query: 80 FFRN 83
F++
Sbjct: 85 FYKG 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
G KLVVVDF A+WCGPC+ IAP+ E+ + +Y +AAF+K+DVD+ D+A VS+MPT I
Sbjct: 18 GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLI 77
Query: 80 FFRN 83
F++
Sbjct: 78 FYKG 81
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD 61
S+ I S F ++ G KLVVVDF+A+WCGP + I P F LS KY N F +VDVD
Sbjct: 12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71
Query: 62 QNQDLAAAQGVSAMPTFIFFR 82
QD+A+ V +MPTF FF+
Sbjct: 72 DCQDVASECEVKSMPTFQFFK 92
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN--AAFFKVD 59
S+ VI+S F G K+VV+DF A+WCGPC+ I PVFE++S F+KVD
Sbjct: 16 SVQVISSYDQFKQVTG--GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVD 73
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN--KI-----PDPNTLEAKIKQY 98
VD+ +A G+ AMPTF+FF+N KI DP+ L+A I Q+
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQH 119
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
KLVVVDF A+WCGPC+ IAP+ E+ S +YP A F+K+DVD+ D+A VSAMPT + F
Sbjct: 19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 78
Query: 82 RN 83
+N
Sbjct: 79 KN 80
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
KLVVVDF A+WCGPC+ IAP+ E+ S +YP A F+K+DVD+ D+A VSAMPT + F
Sbjct: 25 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 84
Query: 82 RN 83
+N
Sbjct: 85 KN 86
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 5 VINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64
V+ + A +N +L+VVDF A WCGPC+ IAP E L+++ P F KVDVDQN+
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNE 62
Query: 65 DLAAAQGVSAMPTFIFFRN 83
+ AA V+AMPTF+F ++
Sbjct: 63 EAAAKYSVTAMPTFVFIKD 81
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGP + I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V MPTF FF+
Sbjct: 65 VASECEVKRMPTFQFFKK 82
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
+I + D + + KLVVVDF A+WCGPC+ IAP+F++LS KY +A F KVDVD+
Sbjct: 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDK 73
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
++ A +SAMPTFI +N
Sbjct: 74 LEETARKYNISAMPTFIAIKN 94
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
+I + D + + KLVVVDF A+WCGPC+ IAP+F++LS KY +A F KVDVD+
Sbjct: 6 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDK 64
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
++ A +SAMPTFI +N
Sbjct: 65 LEETARKYNISAMPTFIAIKN 85
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
LVVVDFTASWCGPC+ IAP F L++K PN F KVD D+ + +A+ + AMPTF+F +
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 83 -NKIPD 87
KI D
Sbjct: 100 EGKILD 105
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From
Saccharomyces Cerevisiae In Complex With Thioredoxin
Trx2
Length = 112
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
G KLVVVDF A+WCGP + IAP+ E+ + +Y +AAF+K+DVD+ D+A VS+MPT I
Sbjct: 26 GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLI 85
Query: 80 FFRN 83
F++
Sbjct: 86 FYKG 89
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae
In Complex With Trx2
Length = 104
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
G KLVVVDF A+WCGP + IAP+ E+ + +Y +AAF+K+DVD+ D+A VS+MPT I
Sbjct: 18 GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLI 77
Query: 80 FFRN 83
F++
Sbjct: 78 FYKG 81
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
Length = 109
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
KLVVVDF A+WCGP + IAP+ E+ S +YP A F+K+DVD+ D+A VSAMPT + F
Sbjct: 25 KLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 84
Query: 82 RN 83
+N
Sbjct: 85 KN 86
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 47/78 (60%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+W GP + I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V MPTF FF+
Sbjct: 65 VASECEVKCMPTFQFFKK 82
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 5 VINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64
++ S A F + ++ +LV+VDF A WCGPC+RIAP +E+ S+ Y F KVDVD+
Sbjct: 12 IVTSQAEFDSIISQ--NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 69
Query: 65 DLAAAQGVSAMPTFIFFRN 83
++ + +++MPTF ++N
Sbjct: 70 EVTEKENITSMPTFKVYKN 88
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
K+VVVDF A WC PC +APV E+L+ YP AF K++ +++QD+A G+ ++PT +FF
Sbjct: 24 KIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFF 83
Query: 82 RN 83
+N
Sbjct: 84 KN 85
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQ 64
+ A ++ KLVV+DF A+WCGPC+ I+P +LS ++ N KVDVD+ +
Sbjct: 5 VKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE 64
Query: 65 DLAAAQGVSAMPTFIFFRNKI 85
D+A +S+MPTF+F +N +
Sbjct: 65 DIAMEYNISSMPTFVFLKNGV 85
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQ 64
+ A ++ KLVV+DF A+WCGPC+ I+P +LS ++ N KVDVD+ +
Sbjct: 10 VKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE 69
Query: 65 DLAAAQGVSAMPTFIFFRNKI 85
D+A +S+MPTF+F +N +
Sbjct: 70 DIAMEYNISSMPTFVFLKNGV 90
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
++ VVDF A WC PC +AP+ E+L+ YP F K++ D+N D+AA GV ++PT IFF
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 82 RNKIP 86
++ P
Sbjct: 77 KDGEP 81
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 49/78 (62%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65
I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD QD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQD 64
Query: 66 LAAAQGVSAMPTFIFFRN 83
+A+ V MPTF FF+
Sbjct: 65 VASEXEVKCMPTFQFFKK 82
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
K+V+ +F+A WCGPC++IAP + +LS YP+ F +DVD+ D +A+ + A PTF F
Sbjct: 47 KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 82 RN 83
R+
Sbjct: 107 RD 108
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQ 62
IV +DA F +++ + G +LV DF A+WCGPC+ IAPV E+L+ Y A K+DVD+
Sbjct: 6 IVKVTDADFDSKVES-GVQLV--DFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP 86
N AA V ++PT I F++ P
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQP 86
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
K+V+ +F+A WCGP ++IAP + +LS YP+ F +DVD+ D +A+ + A PTF F
Sbjct: 47 KIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 82 RN 83
R+
Sbjct: 107 RD 108
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83
+V+DF A+WCGPC+ + P +L + YP+ F K DVD++ D+A V+AMPTF+ ++
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKD 92
Query: 84 -----KI--PDPNTLEAKIK 96
KI +P LE IK
Sbjct: 93 GQLIGKIIGANPTALEKGIK 112
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 8 SDAHFHT-EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-FKVDVDQNQD 65
+D H+ E G K +VDF A WCGPC+ +AP+ E+LS++Y + +KV+VD+ +
Sbjct: 37 ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96
Query: 66 LAAAQGVSAMPTFIF 80
LA G+ ++PT F
Sbjct: 97 LARDFGIQSIPTIWF 111
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 2 SIIVINSDAHFHTEMNNCGT--KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKV 58
S+IVI+S A + ++ K +VVDFTA+WCGPC+ IAP+FE LS Y F KV
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKI 85
DVD +A A G++AMPTF +++ +
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKDGV 89
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 8 SDAHFHT-EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-FKVDVDQNQD 65
+D H+ E G K +VDF A WCGPC+ +AP+ E+LS++Y + +KV+VD+ +
Sbjct: 37 ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96
Query: 66 LAAAQGVSAMPTFIF 80
LA G+ +PT F
Sbjct: 97 LARDFGIQGIPTIWF 111
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTF 78
G L +VDF A WCGPC+ ++P+ E+L+R + KV+VD++ LAA GV ++PT
Sbjct: 49 GAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTL 108
Query: 79 IFFRNKIP-------DP-NTLEAKIKQY 98
+ FR P P LE +++ Y
Sbjct: 109 VLFRRGAPVATWVGASPRRVLEERLRPY 136
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
LV+VDF A+WCGPCQR+ + ++ + F KVDVD+N + A A GVS++P F +
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 83 NKIPDPNTLE 92
+ + TL+
Sbjct: 85 KEGNEIKTLD 94
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQ 62
IV +DA F +++ + G +LV DF A+WCG C+ IAPV E+L+ Y A K+DVD+
Sbjct: 5 IVKVTDADFDSKVES-GVQLV--DFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDE 61
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP 86
N AA V ++PT I F++ P
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQP 85
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQ 62
IV +D F E + +V+ DF A WCGPC+ IAPV E+L ++ + K+DVD+
Sbjct: 3 IVKATDQSFSAETSE---GVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE 59
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
NQ+ A GV ++PT + ++
Sbjct: 60 NQETAGKYGVMSIPTLLVLKD 80
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQ 62
IV +DA F +++ + G +LV DF A+WCG C+ IAPV E+L+ Y A K+DVD+
Sbjct: 6 IVKVTDADFDSKVES-GVQLV--DFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP 86
N AA V ++PT I F++ P
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQP 86
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTF 78
G K +VDF A WCGPC+ +AP+ ++L+++Y +KVD ++ Q+LA A G+ ++P+
Sbjct: 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSI 96
Query: 79 IF 80
+F
Sbjct: 97 LF 98
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 2 SIIVINSDAHFHTEMNNCGT--KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKV 58
S+IVI+S A + ++ K +VV FTA+WCGPC+ IAP+FE LS Y F KV
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKI 85
DVD +A A G++AMPTF +++ +
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKDGV 89
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
MS+I + +D +F E+ K V+VDF A WCGPC+ IAP+ E+L+++Y KV+
Sbjct: 1 MSVIEV-TDENFEQEVLK-SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVN 58
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD+N + AA G+ ++PT + F+N
Sbjct: 59 VDENPNTAAQYGIRSIPTLLLFKN 82
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
Length = 106
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQ 62
IV +DA F +++ + G +LV DF A+ CGPC+ IAPV E+L+ Y A K+DVD+
Sbjct: 5 IVKVTDADFDSKVES-GVQLV--DFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP 86
N AA V ++PT I F++ P
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDGQP 85
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQL-SRKYPNAAFFKVDVDQNQDL 66
+DA F T++ + K V+VDF A+WCGPC+ +APV E++ + + + K+DVD N +
Sbjct: 13 TDASFATDVLS-SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 71
Query: 67 AAAQGVSAMPTFIFFRNKIPDPNTLEAKIK 96
A V ++PT I F++ P + AK K
Sbjct: 72 ARNFQVVSIPTLILFKDGQPVKRIVGAKGK 101
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMPTFIFF 81
LV+VDF A WC PC+ IAP+ E+++++Y K+DVD+N A V ++PT I F
Sbjct: 21 LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILF 80
Query: 82 RNKIPDPNTLEAKIKQYY 99
++ P + A+ K+ Y
Sbjct: 81 KDGQPVEVLVGAQPKRNY 98
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMPTFIFF 81
LV+VDF A WC PC+ IAP+ E+++++Y K+DVD+N A V ++PT I F
Sbjct: 20 LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILF 79
Query: 82 RNKIPDPNTLEAKIKQYY 99
++ P + A+ K+ Y
Sbjct: 80 KDGQPVEVLVGAQPKRNY 97
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDL 66
+DA+F + G K V+VDF A+WCGPC+ +APV E+ + + + K++VD+N +
Sbjct: 6 TDANFQQAIQ--GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 67 AAAQGVSAMPTFIFFRNKIP 86
+ G+ ++PT I F+ P
Sbjct: 64 TSQFGIMSIPTLILFKGGRP 83
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDL 66
+DA+F + G K V+VDF A+WCGPC+ +APV E+ + + + K++VD+N +
Sbjct: 6 TDANFQQAIQ--GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 67 AAAQGVSAMPTFIFFRNKIP 86
+ G+ ++PT I F+ P
Sbjct: 64 TSQFGIMSIPTLILFKGGEP 83
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLS-RKYPNAAFFKVDVDQNQDL 66
+DA F T++ + K V+VDF A+WCGPC+ +APV E+++ + + K+DVD N +
Sbjct: 18 TDASFATDVLS-SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 76
Query: 67 AAAQGVSAMPTFIFFRNKIPDPNTLEAKIK 96
A V ++PT I F++ P + AK K
Sbjct: 77 ARNFQVVSIPTLILFKDGQPVKRIVGAKGK 106
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQ 62
IV +D F E + +V+ DF A WCGP + IAPV E+L ++ + K+DVD+
Sbjct: 3 IVKATDQSFSAETSE---GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
NQ+ A GV ++PT + ++
Sbjct: 60 NQETAGKYGVMSIPTLLVLKD 80
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQ 62
IV +DA F +++ + G +LV DF A+WCG + IAPV E+L+ Y A K+DVD+
Sbjct: 6 IVKVTDADFDSKVES-GVQLV--DFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP 86
N AA V ++PT I F++ P
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDGQP 86
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ E+++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQ 62
IV +D F E + +V+ DF A WCGP + IAPV E+L ++ + K+DVD+
Sbjct: 3 IVKATDQSFSAETSE---GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
NQ+ A GV ++PT + ++
Sbjct: 60 NQETAGKYGVMSIPTLLVLKD 80
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
V+VDF A WCGPC+ IAPV ++L+++Y A +K++ D+ +A + ++PT +FF+
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 83 N 83
N
Sbjct: 80 N 80
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
V+VDF A WCGPC+ IAPV ++L+++Y A +K++ D+ +A + ++PT +FF+
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 83 N 83
N
Sbjct: 81 N 81
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQ 64
+N D F + G K VV+D WCGPC+ +AP +E+L+ +Y + F K+D +Q N+
Sbjct: 23 VNKDT-FWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK 81
Query: 65 DLAAAQGVSAMPTFIFFRN 83
LA G+ +PTF +
Sbjct: 82 TLAKELGIRVVPTFKILKE 100
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ ++PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 92
Query: 83 N 83
N
Sbjct: 93 N 93
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDL 66
+DA+F + G V+VDF A+WCGPC+ +APV E+ + + + K++VD+N +
Sbjct: 6 TDANFQQAIQGDGP--VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 67 AAAQGVSAMPTFIFFRNKIP 86
+ G+ ++PT I F+ P
Sbjct: 64 TSQFGIMSIPTLILFKGGRP 83
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQ 64
+N D F + G K VV+D WCGPC+ +AP +E+L+ +Y + F K+D +Q N+
Sbjct: 11 VNKDT-FWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK 69
Query: 65 DLAAAQGVSAMPTFIFFR 82
LA G+ +PTF +
Sbjct: 70 TLAKELGIRVVPTFKILK 87
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDL 66
+DA+F + G V+VDF A+WCGPC+ +APV E+ + + + K++VD+N +
Sbjct: 6 TDANFQQAIQGDGP--VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 67 AAAQGVSAMPTFIFFRNKIP 86
+ G+ ++PT I F+ P
Sbjct: 64 TSQFGIMSIPTLILFKGGEP 83
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQL-SRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
VVVDF A WCGPC+ + P E++ ++++ KVD+D + DLA VSA+PT + +
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 83 N--------KIPDPNTLEAKIKQ 97
N I D + LEA +K+
Sbjct: 94 NGDVVDKFVGIKDEDQLEAFLKK 116
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ + ++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IAP+ ++++ +Y K+++DQN A G+ PT + F+
Sbjct: 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLLLFK 83
Query: 83 N 83
N
Sbjct: 84 N 84
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMPTFIF 80
KLV+VD A WC PC P++++++ KY A F +++VD+NQ +A V +PT +
Sbjct: 22 KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLI 81
Query: 81 FRN--------KIPDPNTLEAKIKQY 98
F N D +TLE+ + +Y
Sbjct: 82 FVNGQLVDSLVGAVDEDTLESTVNKY 107
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQL-SRKYPNAAFFKVDVDQNQDL 66
+DA F T++ + K V+VDF A+WCGP + +APV E++ + + + K+DVD N +
Sbjct: 15 TDASFATDVLSSN-KPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPET 73
Query: 67 AAAQGVSAMPTFIFFRNKIPDPNTLEAKIK 96
A V ++PT I F++ P + AK K
Sbjct: 74 ARNFQVVSIPTLILFKDGQPVKRIVGAKGK 103
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
V+VDF A WCGP + IAPV ++L+++Y A +K++ D+ +A + ++PT +FF+
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 83 N 83
N
Sbjct: 81 N 81
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGPC+ IA + ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGP + IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 43 ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 102
Query: 83 N 83
N
Sbjct: 103 N 103
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIF 80
K V+VDF A+WCGPC++IAP E ++ +Y + K+++D+N AA GV ++PT
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNV 83
Query: 81 FRN 83
++
Sbjct: 84 YQG 86
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCG C+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WCGP + IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQ 64
+N D F + G K VV+D WCGP + +AP +E+L+ +Y + F K+D +Q N+
Sbjct: 10 VNKDT-FWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK 68
Query: 65 DLAAAQGVSAMPTFIFFR 82
LA G+ +PTF +
Sbjct: 69 TLAKELGIRVVPTFKILK 86
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 24 VVVDFTASWCG-PCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
++VDF A WCG PC+ IAP+ ++++ +Y K+++DQN A G+ +PT + F
Sbjct: 23 ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82
Query: 82 RN 83
+N
Sbjct: 83 KN 84
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
L V FTA WCGPC+ I E+++ ++P F KVD D N ++ + V +PTFI R
Sbjct: 39 LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98
Query: 83 N 83
+
Sbjct: 99 S 99
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
V+VDF A WCGPC+ IAPV ++++ +Y + K++ D++ ++A+ G+ ++PT + F+
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 83 N 83
Sbjct: 82 G 82
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFE----QLSRKYPNAAFFKVDVDQNQDL 66
+F +NN +++V+F A WCG C+++AP +E +LS++ P KVD + DL
Sbjct: 16 NFDDVVNN--ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 67 AAAQGVSAMPTFIFFRNKIP 86
A VS PT FR P
Sbjct: 74 AKRFDVSGYPTLKIFRKGRP 93
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQ 62
I+ +D F T++ ++VDF A WCGPC+ IAP+ ++++ +Y K+++DQ
Sbjct: 4 IIHLTDDSFDTDLVKADGA-ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
N A +PT + F+N
Sbjct: 63 NPGTAPKYIERGIPTLLLFKN 83
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDL 66
SD+ F ++ + LV+VDF A WCGPC+ I P ++ +++ KV++D N +
Sbjct: 8 SDSSFDQDVLKA-SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPET 66
Query: 67 AAAQGVSAMPTFIFFRN 83
A V ++PT + R+
Sbjct: 67 PNAYQVRSIPTLMLVRD 83
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 23 LVVVDFTASWCGPCQRIAPVFE----QLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
+++V+F A WCG C+++AP +E +LS++ P KVD DLA VS PT
Sbjct: 149 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL 208
Query: 79 IFFRNKIP 86
FR P
Sbjct: 209 KIFRKGRP 216
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQ----LSRKYPNAAFFK 57
++V+N DA+F + + T V+++F A WCG C++ AP +E+ L K P K
Sbjct: 16 GVLVLN-DANFDNFVADKDT--VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAK 72
Query: 58 VDVDQNQDLAAAQGVSAMPTFIFFR 82
+D LA+ VS PT +
Sbjct: 73 IDATSASVLASRFDVSGYPTIKILK 97
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WC C+ IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 3 IIVINSDAHF-HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA--AFFKVD 59
+I IN F + G KL+V+ F SW PC+ + VFE +S + N+ +F +D
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 60 VDQNQDLAAAQGVSAMPTFIFFR 82
D+N +++ +SA+P FI
Sbjct: 62 ADENSEISELFEISAVPYFIIIH 84
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 15/75 (20%)
Query: 24 VVVDFTASWCGP--------------CQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAA 68
++VDF A WCGP C+ IAP+ ++++ +Y K+++DQN A
Sbjct: 24 ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 83
Query: 69 AQGVSAMPTFIFFRN 83
G+ +PT + F+N
Sbjct: 84 KYGIRGIPTLLLFKN 98
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 8 SDAHFHTEMNNCGT-KLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQD 65
+D +F + +++ G+ L++V+F A WCG C+R+AP +E + + KVD N +
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTN 66
Query: 66 LAAAQGVSAMPTFIFFRN 83
GVS PT FR+
Sbjct: 67 TCNKYGVSGYPTLKIFRD 84
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA----FFKVDVDQNQDLAAAQGVSAMPT 77
K ++V+F A WCG C+ +AP + + + K KVD + DLA GV PT
Sbjct: 25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT 84
Query: 78 FIFFRN 83
FFRN
Sbjct: 85 IKFFRN 90
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
++VDF A WC + IAP+ ++++ +Y K+++DQN A G+ +PT + F+
Sbjct: 23 ILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 83 N 83
N
Sbjct: 83 N 83
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAPVFEQLS----RKYPN---AAFFKVDVDQNQDLAA 68
+NN LV +F A WC Q + P+FE+ S ++PN F +VD DQ+ D+A
Sbjct: 19 LNNADVALV--NFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQ 76
Query: 69 AQGVSAMPTFIFFRN 83
+S PT FRN
Sbjct: 77 RYRISKYPTLKLFRN 91
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRK-YPNAAFFK---VDVDQNQDLAAAQGVSAMPTF 78
+ + F A WCG C+ +AP +E+LS+K +P A K VD +++ + V PT
Sbjct: 25 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 84
Query: 79 IFFRN 83
+ FR
Sbjct: 85 LLFRG 89
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of
Human Erp46
Length = 110
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRK-YPNAAFFK---VDVDQNQDLAAAQGVSAMPTF 78
+ + F A WCG C+ +AP +E+LS+K +P A K VD +++ + V PT
Sbjct: 18 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 77
Query: 79 IFFRN 83
+ FR
Sbjct: 78 LLFRG 82
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRK-YPNAAFFK---VDVDQNQDLAAAQGVSAMPTF 78
+ + F A WCG C+ +AP +E+LS+K +P A K VD +++ + V PT
Sbjct: 23 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82
Query: 79 IFFRN 83
+ FR
Sbjct: 83 LLFRG 87
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 8 SDAHFHTEMNNCGT-KLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQD 65
+D +F + +++ G+ L++V+F A WCG +R+AP +E + + KVD N +
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN 66
Query: 66 LAAAQGVSAMPTFIFFRN 83
GVS PT FR+
Sbjct: 67 TCNKYGVSGYPTLKIFRD 84
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQG 71
E+ N K V+++F A WCG C+ + P +++L K PN K+D N D+ +
Sbjct: 364 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYE 422
Query: 72 VSAMPTFIFFRNKIPDPNTLEAKIKQYYXXXXXXXXXXXXAGHMDLTSFIMKNQCEALN 130
V PT F P + K+Y G +L+ FI Q EA N
Sbjct: 423 VRGFPTIYF------SPANKKLNPKKY-------------EGGRELSDFISYLQREATN 462
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 VVDFTASWCGPCQRIAPVF-EQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83
V+DF A WCGPC+ AP+F E + + F KV+ + L+ + ++PT +RN
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human
Txnl2
Length = 153
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA 67
S F + L+VV F A W C ++ V +L+++ P +F K++ + +++
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 78
Query: 68 AAQGVSAMPTFIFFRN 83
+S++PTF+FF+N
Sbjct: 79 EKYEISSVPTFLFFKN 94
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA 67
S F + L+VV F A W C ++ V +L+++ P +F K++ + +++
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS 84
Query: 68 AAQGVSAMPTFIFFRN 83
+S++PTF+FF+N
Sbjct: 85 EKYEISSVPTFLFFKN 100
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMP 76
N ++V+ F A WC C + ++L + Y + KVD+D+N+ LA V ++P
Sbjct: 39 NMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLP 98
Query: 77 TFIFFRNK 84
T I +NK
Sbjct: 99 TIILLKNK 106
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA--FFKVDVDQNQDLAAAQ 70
H E+ N K V+V + A WCG C+R+AP +++L+ Y NA +D ++
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV 427
Query: 71 GVSAMPTFIFF 81
+ PT + +
Sbjct: 428 VIEGYPTIVLY 438
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 23 LVVVDFTASWCGPCQRIAPVF----EQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
LV+ +F A WCG C+ +AP + E L K N ++D +NQDL + P+
Sbjct: 33 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQDLCMEHNIPGFPSL 90
Query: 79 IFFRN 83
F+N
Sbjct: 91 KIFKN 95
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMPTF 78
G VVDF A WCGPCQ AP FE L+R KVD G+ A P+
Sbjct: 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 79
Query: 79 IFFRNKIPDPNTLEAKI 95
++ + + E +I
Sbjct: 80 KLYQYERAKKSIWEEQI 96
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
++VDF A WCGPC+++AP F+ + K+D + +A + +P FI F
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQNQDLAAAQGVSAMPTF-IF 80
L +V+F A WCG CQR+ P +++ + + V+ D++Q L GV PT IF
Sbjct: 37 LWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIF 96
Query: 81 FRNK 84
NK
Sbjct: 97 GANK 100
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 24 VVVDFTASWCGPCQRIAPVFE-QLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
+V+ F A WC PC +I F+ QL+ Y +DVD + L + A+PTF F+
Sbjct: 43 IVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTLVDIDVDIHPKLNDQHNIKALPTFEFYF 100
Query: 83 N 83
N
Sbjct: 101 N 101
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase
From Bacteroides Thetaiotaomicron
Length = 130
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 22 KLVVVDFTASWCGPCQRIAPVF--EQLSRKYPNAAF--FKVDVDQNQ--DLAAAQGVSAM 75
KL+ VD +WCGPC+R++ V + L Y N F K+D+++ + +L GV A
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY 87
Query: 76 PTFIF 80
PT +F
Sbjct: 88 PTLLF 92
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQ 62
++ +DA F +E+ + V+V F ASWCGPCQ ++P+ + Y + K+++D
Sbjct: 9 VITITDAEFESEVLK-AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 67
Query: 63 NQDLAAAQGVSAMPTFIFFRNK 84
N V +P + +
Sbjct: 68 NPTTVKKYKVEGVPALRLVKGE 89
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
K V V+F A WCG C+++AP++++L Y N K+D N+ A V + PT
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTL 325
Query: 79 IFF 81
FF
Sbjct: 326 KFF 328
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQL-SRKYPNAAFFKVDVDQNQDL 66
SD+ F E+ ++++ FT SWC PC+++ P FE++ S+ + F +D + +
Sbjct: 5 SDSDFQLEVRQHPDPIIIM-FTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 67 AAAQGVSAMPTFIFF 81
A + +P+ F
Sbjct: 64 MAELNIRTLPSLALF 78
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQG 71
E+ N K V+++F A WCG C+ + P +++L K PN K+D N D+ +
Sbjct: 39 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYE 97
Query: 72 VSAMPTFIF 80
V PT F
Sbjct: 98 VRGFPTIYF 106
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPN---AAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81
+V+F A WCG C++++ F + +++ A D+++N+ L A V+ PT + F
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Query: 82 R 82
R
Sbjct: 99 R 99
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
Length = 140
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQDLAAAQGVSAMPTFIF 80
K VVV F + C C+ P FE+ +++Y ++A F ++++ N A GV PTF F
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF 84
Query: 81 FRNKIP 86
F + P
Sbjct: 85 FCHGRP 90
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTF 78
K V V+F A WCG C+++AP++++L Y N K+D N+ A V + PT
Sbjct: 26 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTL 83
Query: 79 IFF 81
FF
Sbjct: 84 KFF 86
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAA--FFKVDVDQNQDLAAAQGVSA------MP 76
+V+F A+W CQ AP++ LS KY F KVDV + D++ VS +P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 77 TFIFFRN 83
T I F+
Sbjct: 90 TLILFQG 96
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPTFIF 80
K +V F+ C CQ++ PV E+L Y + F+ VDV++ + L + +P ++
Sbjct: 23 KACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILY 82
Query: 81 FRN 83
F++
Sbjct: 83 FKD 85
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
K V+++F A WCG C+++ P++ L +KY + K+D N V PT
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 79 IF 80
F
Sbjct: 86 YF 87
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDV 60
+I+ IN +++ + T V+ F + C ++ PV E L+ +Y K+D
Sbjct: 8 NIVNIN-ESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDC 66
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP 86
D Q +AA G+ A+PT F+N P
Sbjct: 67 DAEQXIAAQFGLRAIPTVYLFQNGQP 92
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF 55
TK V+++F A WCG C+ +AP +E+L Y + F
Sbjct: 25 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEF 59
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF--KVD 59
+I+ IN +++ + T V+ F + C ++ P+ E L+ +Y N F K+D
Sbjct: 8 NIVNIN-ESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY-NGQFILAKLD 65
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP 86
D Q +AA G+ A+PT F+N P
Sbjct: 66 CDAEQMIAAQFGLRAIPTVYLFQNGQP 92
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA 68
+NN G +V++ F A+WC C +A + ++L+ KY + +D + L A
Sbjct: 32 LNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKA 84
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
V+++F A WCG C++ AP +E+++ P A K+D LA+ VS PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 80 FFR 82
+
Sbjct: 97 ILK 99
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQ 64
K + +D A+WCGPC+ P ++L KY + F + D+N+
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNK 75
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVDVDQNQDLAAAQGVSAMPTF 78
G VVDF A W GP Q AP FE L+R KVD G+ A P+
Sbjct: 674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 733
Query: 79 IFFRNKIPDPNTLEAKI 95
++ + + E +I
Sbjct: 734 KLYQYERAKKSIWEEQI 750
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAPVFEQ--LSRKYPNAAFFKVDVDQNQDL 66
+++ K+V++ FTASWCG C++ P E+ + NA F + +D+++ L
Sbjct: 28 LSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL 80
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD 61
+V +DF ASWCGPC++ P Q KY F V V+
Sbjct: 30 VVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVN 68
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 23 LVVVDFTASWCGPCQRIAP--------VFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSA 74
+ +V+F A WCG C+ + P V EQ K AA VD NQ LA+ G+
Sbjct: 27 VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA---VDATVNQVLASRYGIRG 83
Query: 75 MPTF-IFFRNKIP 86
PT IF + + P
Sbjct: 84 FPTIKIFQKGESP 96
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 9 DAH-FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA 67
D H FH E + K V+ F A WC CQ APV Q++ +P F V
Sbjct: 28 DGHDFHGE--SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGV--------- 76
Query: 68 AAQGVSAMPTFIFFRNKIP 86
G+ +P F NK P
Sbjct: 77 --AGLDQVPAMQEFVNKYP 93
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV---DVDQNQDLAAAQG 71
+M++ K V F+ASWC PC+ P + K+ ++ F++ D+ +D A
Sbjct: 42 DMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAY- 100
Query: 72 VSAMPTF-IFFRNKIPDPNTLEAKIKQY 98
+ MP I F N+ N +EA K+Y
Sbjct: 101 YAKMPWLSIPFANR----NIVEALTKKY 124
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 9 DAH-FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA 67
D H FH E + K V+ F A WC CQ APV Q++ +P F V
Sbjct: 14 DGHDFHGE--SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGV--------- 62
Query: 68 AAQGVSAMPTFIFFRNKIP 86
G+ +P F NK P
Sbjct: 63 --AGLDQVPAMQEFVNKYP 79
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV---DVDQNQ 64
K V + F+ASWC PC+ PV + K+ A F+V D+N+
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENE 74
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSR---------KYPNAA-------------FFKVD 59
K+ +V+ ASWC PC AP+ +L + Y +AA F +V
Sbjct: 43 KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVG 102
Query: 60 VDQNQDLAAAQGVSAMP-TFIFFR 82
VD N + GV +P TF+ R
Sbjct: 103 VDANGRASIEWGVYGVPETFVVGR 126
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced
Form
Length = 110
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA 69
AHF G +V F + C C+ + V ++ + P A VD + +L
Sbjct: 14 AHFE------GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKE 67
Query: 70 QGVSAMPTFIFFRN 83
G +PT +F R+
Sbjct: 68 LGFERVPTLVFIRD 81
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV 58
E+ + KLV F+ASWC PC+ P + K+ + F+V
Sbjct: 19 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEV 64
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV 58
E+ + KLV F+ASWC PC+ P + K+ + F+V
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEV 65
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV 58
E+ + KLV F+ASWC PC+ P + K+ + F+V
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEV 65
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV 58
E+ + KLV F+ASWC PC+ P + K+ + F+V
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEV 65
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL 66
K +V+F A+WC PC+ P Q+ + + + F V + N+ L
Sbjct: 35 KAYIVNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGIAVNEQL 79
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVD 61
K ++V+ A+WC PC++ P ++L K PN +++D
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA 53
K+V+V+F ASWC C+ P ++L + +P
Sbjct: 42 KIVLVNFWASWCPYCRDEXPSXDRLVKSFPKG 73
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 14 TEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF--FKVDVDQNQDLAAAQ 70
++++ ++V+V+F A+WC PC+ P +L+ F V +D+ +A +
Sbjct: 21 VKLSDLKGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDEGGKVAVEE 79
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPN--AAFFKVDVDQNQDLAAAQGVSAMPT 77
+++F A WC CQ + P +E + + KVDV + L+ ++A+PT
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPT 80
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV-----DQNQDL 66
N G K ++ F SWC PC++ P F+ +P+ + V V +QNQ +
Sbjct: 32 NKGQK-TILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQV 84
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
Length = 519
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 26 VDFTASWCGPCQRIAPVFEQLS------RKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
V+F ASWCG AP +++L+ R N A + N + ++ PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 80 FFR 82
FF+
Sbjct: 95 FFQ 97
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV 58
E+ + KLV F+ASWC P + P + K+ + F+V
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEV 65
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 26 VDFTASWCGPCQRIAPVFEQLSR--KYPNAAFFKVDVDQNQDLAAAQ----GVSAMPTFI 79
V+F ASWCG C AP + L+ K A + +D ++ +A + PT
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 80 FF 81
FF
Sbjct: 95 FF 96
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 25 VVDFTASWCGPCQRIAPVFEQL 46
+V+ A+WCGPC++ P +
Sbjct: 28 IVNLWATWCGPCRKEXPAXSKW 49
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAP 41
+ + K V F+ASWC PC+ P
Sbjct: 26 LPSLAGKTVFFYFSASWCPPCRAFTP 51
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAP 41
+ + K V F+ASWC PC+ P
Sbjct: 26 LPSLAGKTVFFYFSASWCPPCRAFTP 51
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAP 41
+ + K V F+ASWC PC+ P
Sbjct: 24 LPSLAGKTVFFYFSASWCPPCRAFTP 49
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 16 MNNCGTKLVVVDFTASWCGPCQRIAP 41
+ + K V F+ASWC PC+ P
Sbjct: 23 LPSLAGKTVFFYFSASWCPPCRAFTP 48
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK-VDVDQNQDLAAAQGVSAMPTFI 79
+K+ + FT+ C C V E+++ + P+A + ++V +N A G+ A+PT +
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 129 LNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQSVK-IHSLK--IKAP------KDK 179
L + + PFT+ LN + +E+D +++++ F+ +V ++++ I P ++
Sbjct: 272 LVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEED 331
Query: 180 GPKTLKLFINQPKTLDFD----AATSNQSVQQIELTEKDLDGTPINLRYVKFQNVQNLQI 235
G ++ + +D+D +N V + TE+ + T + R KF + N +
Sbjct: 332 GVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRA 391
Query: 236 FVLDN 240
+DN
Sbjct: 392 KAIDN 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,276,576
Number of Sequences: 62578
Number of extensions: 262879
Number of successful extensions: 827
Number of sequences better than 100.0: 175
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 183
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)