Query psy543
Match_columns 278
No_of_seqs 342 out of 1771
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:19:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0908|consensus 100.0 8.1E-75 1.7E-79 488.1 22.9 278 1-278 1-288 (288)
2 PF06201 PITH: PITH domain; I 100.0 5.8E-46 1.2E-50 301.2 12.2 142 116-257 1-151 (152)
3 KOG1730|consensus 100.0 2.9E-41 6.3E-46 270.1 10.1 153 114-270 23-196 (206)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 8.9E-22 1.9E-26 151.7 13.3 78 8-85 1-79 (114)
5 KOG0910|consensus 99.9 6E-22 1.3E-26 157.3 10.6 96 4-100 45-149 (150)
6 KOG0907|consensus 99.9 1.9E-21 4.2E-26 148.5 11.9 82 17-98 17-105 (106)
7 cd02985 TRX_CDSP32 TRX family, 99.9 4.2E-21 9.1E-26 146.4 12.8 91 7-97 1-101 (103)
8 cd02986 DLP Dim1 family, Dim1- 99.9 7.8E-21 1.7E-25 145.5 12.8 77 9-85 2-79 (114)
9 PLN00410 U5 snRNP protein, DIM 99.8 4.2E-20 9.2E-25 147.6 11.9 101 3-103 5-124 (142)
10 PF00085 Thioredoxin: Thioredo 99.8 2.3E-19 5E-24 135.5 13.5 93 4-98 2-103 (103)
11 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1.7E-19 3.6E-24 140.0 12.6 82 2-85 5-86 (113)
12 PHA02278 thioredoxin-like prot 99.8 1.3E-19 2.8E-24 138.1 11.4 77 7-85 2-83 (103)
13 cd02948 TRX_NDPK TRX domain, T 99.8 2.2E-19 4.8E-24 136.6 12.1 91 4-97 2-101 (102)
14 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.2E-19 9.2E-24 137.4 12.1 82 3-85 11-95 (113)
15 cd02999 PDI_a_ERp44_like PDIa 99.8 2.9E-19 6.2E-24 135.6 10.8 76 10-85 7-83 (100)
16 cd02957 Phd_like Phosducin (Ph 99.8 3.8E-19 8.3E-24 137.8 11.7 82 2-85 5-87 (113)
17 cd03065 PDI_b_Calsequestrin_N 99.8 3.6E-19 7.7E-24 139.0 11.0 95 3-99 11-119 (120)
18 cd02956 ybbN ybbN protein fami 99.8 4.5E-19 9.7E-24 133.0 10.8 76 10-85 1-77 (96)
19 COG3118 Thioredoxin domain-con 99.8 2.8E-19 6.1E-24 156.3 10.9 98 3-101 25-132 (304)
20 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.1E-18 2.4E-23 132.3 12.0 80 3-85 3-83 (101)
21 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-18 2.3E-23 132.9 11.7 80 3-84 3-83 (104)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 7.9E-19 1.7E-23 135.7 10.2 90 8-97 10-110 (111)
23 cd02987 Phd_like_Phd Phosducin 99.8 1.9E-18 4.2E-23 143.9 12.7 83 2-85 63-146 (175)
24 PTZ00051 thioredoxin; Provisio 99.8 2.5E-18 5.5E-23 129.2 12.0 82 2-85 1-82 (98)
25 cd02984 TRX_PICOT TRX domain, 99.8 4.4E-18 9.4E-23 127.6 11.3 88 8-95 1-96 (97)
26 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.8E-18 1E-22 130.4 11.5 80 3-85 3-89 (108)
27 PRK09381 trxA thioredoxin; Pro 99.8 9.2E-18 2E-22 128.9 13.0 95 3-99 5-108 (109)
28 cd02994 PDI_a_TMX PDIa family, 99.8 8E-18 1.7E-22 127.4 11.6 78 3-85 3-82 (101)
29 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.5E-17 5.4E-22 126.2 11.9 81 3-85 2-85 (109)
30 cd02962 TMX2 TMX2 family; comp 99.7 1.6E-17 3.6E-22 134.9 11.2 82 3-85 30-119 (152)
31 PRK10996 thioredoxin 2; Provis 99.7 4.1E-17 8.8E-22 131.1 12.3 89 8-98 41-138 (139)
32 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.8E-17 1E-21 122.9 10.7 79 3-85 2-84 (102)
33 cd03001 PDI_a_P5 PDIa family, 99.7 9.7E-17 2.1E-21 121.4 12.3 81 3-85 2-83 (103)
34 PTZ00443 Thioredoxin domain-co 99.7 9.1E-17 2E-21 138.4 13.1 99 3-102 32-142 (224)
35 TIGR01068 thioredoxin thioredo 99.7 1.4E-16 3.1E-21 119.6 11.8 90 8-98 2-100 (101)
36 cd02965 HyaE HyaE family; HyaE 99.7 6.7E-17 1.4E-21 123.8 10.0 76 8-85 16-94 (111)
37 cd02993 PDI_a_APS_reductase PD 99.7 1.5E-16 3.2E-21 122.5 11.2 82 3-85 3-89 (109)
38 TIGR01126 pdi_dom protein disu 99.7 2E-16 4.2E-21 119.2 10.7 88 8-97 2-100 (102)
39 cd02950 TxlA TRX-like protein 99.7 3E-16 6.4E-21 126.6 12.3 93 9-103 10-114 (142)
40 cd02952 TRP14_like Human TRX-r 99.7 2.1E-16 4.4E-21 123.1 10.9 81 5-85 5-101 (119)
41 cd02992 PDI_a_QSOX PDIa family 99.7 2.8E-16 6E-21 122.0 11.6 82 2-85 2-89 (114)
42 cd03000 PDI_a_TMX3 PDIa family 99.7 1.7E-16 3.6E-21 121.0 10.2 86 9-97 6-102 (104)
43 cd02975 PfPDO_like_N Pyrococcu 99.7 3.4E-16 7.3E-21 121.4 11.3 87 12-100 15-111 (113)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.4E-16 7.3E-21 118.5 10.9 81 2-85 1-84 (104)
45 cd02988 Phd_like_VIAF Phosduci 99.7 3.1E-16 6.7E-21 132.4 11.5 80 2-85 83-163 (192)
46 cd02997 PDI_a_PDIR PDIa family 99.7 4.2E-16 9.2E-21 118.0 11.1 80 3-85 2-86 (104)
47 cd02953 DsbDgamma DsbD gamma f 99.7 4.4E-16 9.5E-21 118.6 9.7 74 10-85 2-85 (104)
48 cd02998 PDI_a_ERp38 PDIa famil 99.7 6.9E-16 1.5E-20 116.8 10.5 80 3-84 2-85 (105)
49 cd02949 TRX_NTR TRX domain, no 99.6 1.5E-15 3.3E-20 114.3 11.0 73 12-85 5-78 (97)
50 PTZ00062 glutaredoxin; Provisi 99.6 1.2E-15 2.5E-20 129.6 11.4 112 6-132 3-121 (204)
51 cd02961 PDI_a_family Protein D 99.6 4.7E-15 1E-19 110.6 10.5 75 8-84 4-81 (101)
52 TIGR00424 APS_reduc 5'-adenyly 99.6 6.2E-15 1.3E-19 138.9 13.2 82 3-85 353-439 (463)
53 TIGR01295 PedC_BrcD bacterioci 99.6 7E-15 1.5E-19 115.5 11.3 75 8-85 12-101 (122)
54 KOG0190|consensus 99.6 2E-15 4.4E-20 141.7 9.4 98 3-103 27-136 (493)
55 PLN02309 5'-adenylylsulfate re 99.6 9.7E-15 2.1E-19 137.5 13.1 82 3-85 347-433 (457)
56 cd02947 TRX_family TRX family; 99.6 1.7E-14 3.7E-19 105.5 10.3 73 11-85 2-74 (93)
57 cd02951 SoxW SoxW family; SoxW 99.6 2.8E-14 6E-19 112.3 11.0 91 9-101 3-121 (125)
58 cd03007 PDI_a_ERp29_N PDIa fam 99.5 5.4E-14 1.2E-18 108.8 10.4 76 3-84 3-90 (116)
59 PTZ00102 disulphide isomerase; 99.5 7.8E-14 1.7E-18 133.2 12.5 97 4-103 35-142 (477)
60 TIGR01130 ER_PDI_fam protein d 99.5 7.9E-14 1.7E-18 132.2 12.5 97 3-102 3-112 (462)
61 PTZ00102 disulphide isomerase; 99.5 6.5E-14 1.4E-18 133.8 11.8 97 3-101 359-467 (477)
62 TIGR00411 redox_disulf_1 small 99.5 1.4E-13 3.1E-18 99.7 9.5 73 24-98 2-81 (82)
63 cd02982 PDI_b'_family Protein 99.5 2.2E-13 4.9E-18 103.0 9.5 78 21-98 12-102 (103)
64 KOG0190|consensus 99.5 8.2E-14 1.8E-18 130.9 8.2 79 3-85 368-449 (493)
65 cd02959 ERp19 Endoplasmic reti 99.5 1.4E-13 3E-18 107.3 7.2 67 19-85 17-88 (117)
66 TIGR02187 GlrX_arch Glutaredox 99.4 9.8E-13 2.1E-17 113.2 11.8 83 19-101 17-113 (215)
67 PRK00293 dipZ thiol:disulfide 99.4 1E-12 2.3E-17 128.1 12.4 95 3-97 454-568 (571)
68 KOG4277|consensus 99.4 1.8E-13 3.9E-18 119.5 6.0 86 16-101 38-134 (468)
69 TIGR02187 GlrX_arch Glutaredox 99.4 1.5E-12 3.2E-17 112.1 11.2 84 14-97 126-214 (215)
70 KOG0912|consensus 99.4 8.5E-13 1.9E-17 115.4 8.2 91 9-101 3-108 (375)
71 PHA02125 thioredoxin-like prot 99.4 2E-12 4.3E-17 92.7 8.5 50 25-79 2-51 (75)
72 TIGR02740 TraF-like TraF-like 99.4 4.1E-12 8.9E-17 112.9 12.3 86 14-100 159-265 (271)
73 cd03008 TryX_like_RdCVF Trypar 99.4 3.1E-12 6.6E-17 103.3 9.1 69 17-85 21-124 (146)
74 cd02973 TRX_GRX_like Thioredox 99.4 2.5E-12 5.3E-17 89.9 7.5 57 24-80 2-58 (67)
75 TIGR01130 ER_PDI_fam protein d 99.4 3.5E-12 7.5E-17 121.0 10.6 90 8-100 352-455 (462)
76 TIGR00412 redox_disulf_2 small 99.3 4.9E-12 1.1E-16 91.0 8.0 55 26-85 3-58 (76)
77 TIGR02738 TrbB type-F conjugat 99.3 8.6E-12 1.9E-16 101.6 10.4 77 21-98 50-152 (153)
78 PF13905 Thioredoxin_8: Thiore 99.3 9.5E-12 2.1E-16 92.8 9.3 63 21-83 1-91 (95)
79 cd03009 TryX_like_TryX_NRX Try 99.3 1E-11 2.2E-16 98.3 8.8 67 19-85 16-111 (131)
80 KOG0911|consensus 99.3 9.8E-13 2.1E-17 110.8 2.9 180 1-192 1-194 (227)
81 cd02964 TryX_like_family Trypa 99.3 1.3E-11 2.9E-16 97.9 8.9 68 18-85 14-111 (132)
82 PRK15412 thiol:disulfide inter 99.3 3.1E-11 6.8E-16 101.5 10.7 81 20-102 67-179 (185)
83 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2.4E-11 5.1E-16 90.1 8.7 69 15-85 6-74 (89)
84 PRK14018 trifunctional thiored 99.3 3.1E-11 6.8E-16 115.4 10.7 77 20-96 55-170 (521)
85 cd02955 SSP411 TRX domain, SSP 99.2 7.2E-11 1.6E-15 92.8 10.7 75 9-85 5-92 (124)
86 TIGR00385 dsbE periplasmic pro 99.2 6.3E-11 1.4E-15 98.5 10.0 79 20-100 62-172 (173)
87 cd03010 TlpA_like_DsbE TlpA-li 99.2 5.3E-11 1.1E-15 93.6 8.5 66 19-85 23-112 (127)
88 PF13098 Thioredoxin_2: Thiore 99.2 4E-11 8.7E-16 92.0 6.0 78 18-95 2-112 (112)
89 KOG0191|consensus 99.2 1.1E-10 2.4E-15 109.0 8.9 84 20-103 46-138 (383)
90 PRK03147 thiol-disulfide oxido 99.1 5.2E-10 1.1E-14 92.4 11.0 78 20-97 60-170 (173)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 3.2E-10 6.9E-15 88.4 8.9 65 20-85 19-104 (123)
92 cd02966 TlpA_like_family TlpA- 99.1 3.9E-10 8.4E-15 85.4 8.8 65 20-84 18-108 (116)
93 COG4232 Thiol:disulfide interc 99.1 3.3E-10 7.2E-15 107.9 10.2 94 4-97 457-566 (569)
94 PLN02919 haloacid dehalogenase 99.1 3.1E-10 6.8E-15 117.8 10.8 81 20-100 419-537 (1057)
95 KOG1731|consensus 99.1 4.8E-11 1E-15 112.5 4.0 97 3-101 41-155 (606)
96 PRK13728 conjugal transfer pro 99.1 1.2E-09 2.5E-14 91.0 10.7 76 25-101 73-173 (181)
97 cd03012 TlpA_like_DipZ_like Tl 99.0 1E-09 2.2E-14 86.3 8.8 65 20-84 22-116 (126)
98 cd02967 mauD Methylamine utili 99.0 3.7E-10 7.9E-15 86.9 5.8 59 21-79 21-83 (114)
99 KOG1672|consensus 99.0 1.9E-09 4.2E-14 88.9 9.0 83 1-85 66-148 (211)
100 PF02114 Phosducin: Phosducin; 99.0 1.9E-09 4.1E-14 95.3 9.0 82 3-85 127-209 (265)
101 PF08534 Redoxin: Redoxin; In 99.0 4.9E-09 1.1E-13 84.3 9.9 67 19-85 26-126 (146)
102 PRK11509 hydrogenase-1 operon 99.0 6.7E-09 1.4E-13 82.0 10.3 93 9-103 24-128 (132)
103 KOG0191|consensus 99.0 2.8E-09 6.2E-14 99.5 9.4 94 8-102 150-255 (383)
104 cd02958 UAS UAS family; UAS is 98.9 8E-09 1.7E-13 79.9 9.9 82 18-99 14-111 (114)
105 TIGR02661 MauD methylamine deh 98.9 8.8E-09 1.9E-13 86.9 10.2 78 20-98 73-178 (189)
106 PTZ00056 glutathione peroxidas 98.9 4.8E-09 1E-13 89.3 8.4 43 19-61 37-81 (199)
107 PF13899 Thioredoxin_7: Thiore 98.9 5.8E-09 1.3E-13 75.9 7.7 63 19-82 15-81 (82)
108 cd02960 AGR Anterior Gradient 98.9 9.5E-09 2.1E-13 81.1 9.3 73 11-84 11-89 (130)
109 COG0526 TrxA Thiol-disulfide i 98.9 6.4E-09 1.4E-13 78.1 7.7 65 21-85 32-100 (127)
110 TIGR02200 GlrX_actino Glutared 98.9 1E-08 2.2E-13 73.0 8.0 66 25-96 2-76 (77)
111 KOG0914|consensus 98.9 4.1E-09 8.9E-14 88.5 6.0 83 3-85 126-216 (265)
112 PLN02399 phospholipid hydroper 98.8 2.2E-08 4.8E-13 87.1 10.1 42 20-61 98-141 (236)
113 cd02969 PRX_like1 Peroxiredoxi 98.8 4E-08 8.6E-13 81.3 10.8 84 20-103 24-156 (171)
114 TIGR02196 GlrX_YruB Glutaredox 98.8 2.9E-08 6.4E-13 69.6 7.7 64 25-95 2-73 (74)
115 PLN02412 probable glutathione 98.8 4E-08 8.8E-13 81.2 9.7 43 19-61 27-71 (167)
116 cd01659 TRX_superfamily Thiore 98.8 4.2E-08 9E-13 65.4 7.8 60 25-84 1-63 (69)
117 KOG3414|consensus 98.7 1.8E-07 3.9E-12 72.0 10.5 101 3-103 5-124 (142)
118 PF13728 TraF: F plasmid trans 98.7 1.4E-07 3E-12 81.2 11.0 72 12-84 111-193 (215)
119 PF06110 DUF953: Eukaryotic pr 98.7 1.5E-07 3.3E-12 73.1 10.0 80 6-85 2-100 (119)
120 PF14595 Thioredoxin_9: Thiore 98.7 5.8E-08 1.3E-12 76.9 7.6 87 10-96 30-126 (129)
121 TIGR01626 ytfJ_HI0045 conserve 98.7 9.7E-08 2.1E-12 79.9 8.9 73 19-93 57-174 (184)
122 KOG2501|consensus 98.7 4.3E-08 9.3E-13 79.1 5.7 66 20-85 32-127 (157)
123 smart00594 UAS UAS domain. 98.6 3.2E-07 6.9E-12 71.9 10.1 65 19-83 25-95 (122)
124 TIGR02540 gpx7 putative glutat 98.6 1.5E-07 3.3E-12 76.5 8.5 43 18-60 19-63 (153)
125 PRK11200 grxA glutaredoxin 1; 98.6 5.3E-07 1.2E-11 65.9 9.1 75 24-100 2-84 (85)
126 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 4.1E-07 8.8E-12 70.6 8.5 65 19-83 23-117 (124)
127 PRK00522 tpx lipid hydroperoxi 98.5 6.2E-07 1.3E-11 74.1 9.8 44 19-62 42-86 (167)
128 KOG3425|consensus 98.5 7.5E-07 1.6E-11 68.1 8.7 77 8-84 11-105 (128)
129 cd00340 GSH_Peroxidase Glutath 98.5 3.2E-07 6.8E-12 74.5 6.5 42 19-61 20-63 (152)
130 TIGR02739 TraF type-F conjugat 98.5 1.7E-06 3.6E-11 76.1 11.3 88 12-100 141-249 (256)
131 PTZ00256 glutathione peroxidas 98.4 9.1E-07 2E-11 74.2 8.5 42 20-61 39-83 (183)
132 TIGR03137 AhpC peroxiredoxin. 98.4 1.5E-06 3.3E-11 73.2 9.5 67 19-85 29-130 (187)
133 TIGR02180 GRX_euk Glutaredoxin 98.4 1.1E-06 2.3E-11 63.5 7.5 67 25-94 1-74 (84)
134 KOG0913|consensus 98.4 7.6E-08 1.6E-12 81.9 0.9 85 8-96 30-123 (248)
135 cd03015 PRX_Typ2cys Peroxiredo 98.4 2.1E-06 4.6E-11 71.2 9.6 43 20-62 28-73 (173)
136 cd03017 PRX_BCP Peroxiredoxin 98.4 1.4E-06 3E-11 69.2 8.1 44 20-63 22-68 (140)
137 PF02966 DIM1: Mitosis protein 98.4 1E-05 2.2E-10 63.2 12.0 97 3-100 2-118 (133)
138 cd03014 PRX_Atyp2cys Peroxired 98.3 1.8E-06 3.9E-11 69.1 7.5 57 20-76 25-85 (143)
139 PRK13703 conjugal pilus assemb 98.3 6.8E-06 1.5E-10 71.9 11.1 87 13-100 135-242 (248)
140 cd02976 NrdH NrdH-redoxin (Nrd 98.3 4.6E-06 1E-10 58.1 7.9 63 25-94 2-72 (73)
141 PF13192 Thioredoxin_3: Thiore 98.3 5.1E-06 1.1E-10 59.4 8.1 66 27-96 4-76 (76)
142 PF11009 DUF2847: Protein of u 98.3 8.5E-06 1.8E-10 61.7 9.5 82 4-85 2-89 (105)
143 TIGR02183 GRXA Glutaredoxin, G 98.3 7.4E-06 1.6E-10 60.1 8.5 74 25-100 2-83 (86)
144 PRK10382 alkyl hydroperoxide r 98.2 1.1E-05 2.4E-10 68.0 10.2 79 19-97 29-154 (187)
145 cd03018 PRX_AhpE_like Peroxire 98.2 8.5E-06 1.8E-10 65.4 8.9 42 22-63 29-73 (149)
146 PRK13190 putative peroxiredoxi 98.2 1.4E-05 3E-10 68.1 10.0 81 20-100 26-155 (202)
147 PRK15000 peroxidase; Provision 98.2 1.3E-05 2.8E-10 68.3 9.5 79 20-98 33-161 (200)
148 PF03190 Thioredox_DsbH: Prote 98.2 1.3E-05 2.8E-10 65.6 8.9 72 10-83 28-111 (163)
149 PRK10606 btuE putative glutath 98.1 8.4E-06 1.8E-10 68.4 7.8 81 17-100 21-116 (183)
150 PRK09437 bcp thioredoxin-depen 98.1 1.1E-05 2.4E-10 65.3 7.9 46 19-64 28-76 (154)
151 KOG3171|consensus 98.1 2.5E-05 5.4E-10 65.8 9.5 82 3-85 140-222 (273)
152 cd02970 PRX_like2 Peroxiredoxi 98.1 1.1E-05 2.4E-10 64.5 6.7 61 22-82 25-87 (149)
153 COG2143 Thioredoxin-related pr 98.1 5.5E-05 1.2E-09 60.8 10.3 82 18-99 39-149 (182)
154 TIGR03143 AhpF_homolog putativ 98.0 4E-05 8.7E-10 75.1 10.9 85 11-95 466-554 (555)
155 cd02968 SCO SCO (an acronym fo 98.0 1.3E-05 2.8E-10 63.8 6.1 43 20-62 21-69 (142)
156 PRK15317 alkyl hydroperoxide r 98.0 4.5E-05 9.7E-10 74.1 10.7 86 11-98 106-197 (517)
157 PTZ00137 2-Cys peroxiredoxin; 98.0 5.1E-05 1.1E-09 67.1 9.7 79 20-98 97-224 (261)
158 cd03419 GRX_GRXh_1_2_like Glut 98.0 4.9E-05 1.1E-09 54.6 8.0 66 25-95 2-74 (82)
159 PF00462 Glutaredoxin: Glutare 97.9 5.1E-05 1.1E-09 51.4 6.9 51 25-80 1-55 (60)
160 TIGR02190 GlrX-dom Glutaredoxi 97.9 8.7E-05 1.9E-09 53.4 8.3 67 22-95 7-78 (79)
161 cd02971 PRX_family Peroxiredox 97.9 3.3E-05 7.2E-10 61.1 6.6 46 20-65 21-69 (140)
162 PRK13599 putative peroxiredoxi 97.9 4.9E-05 1.1E-09 65.4 7.7 79 20-98 27-155 (215)
163 PRK13191 putative peroxiredoxi 97.9 0.0001 2.2E-09 63.5 9.3 79 20-98 32-160 (215)
164 PRK13189 peroxiredoxin; Provis 97.8 0.00012 2.6E-09 63.3 9.2 79 20-98 34-162 (222)
165 cd03016 PRX_1cys Peroxiredoxin 97.8 0.00012 2.5E-09 62.5 8.9 77 23-99 28-154 (203)
166 cd02991 UAS_ETEA UAS family, E 97.8 0.00029 6.3E-09 54.7 9.9 81 18-100 14-114 (116)
167 TIGR03140 AhpF alkyl hydropero 97.8 0.0002 4.4E-09 69.5 10.9 88 11-98 107-198 (515)
168 PRK10329 glutaredoxin-like pro 97.7 0.00036 7.8E-09 50.5 9.2 68 25-99 3-77 (81)
169 PTZ00253 tryparedoxin peroxida 97.7 0.00029 6.3E-09 59.8 9.5 43 20-62 35-80 (199)
170 cd02066 GRX_family Glutaredoxi 97.7 0.00024 5.1E-09 48.9 7.0 54 25-85 2-59 (72)
171 PRK10877 protein disulfide iso 97.7 0.00026 5.6E-09 61.7 8.7 75 20-97 106-229 (232)
172 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00018 4E-09 50.6 6.2 50 26-80 2-54 (72)
173 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00018 4E-09 51.4 5.8 50 25-79 1-54 (79)
174 KOG3170|consensus 97.6 0.00099 2.2E-08 55.7 10.5 80 3-85 93-172 (240)
175 cd03029 GRX_hybridPRX5 Glutare 97.5 0.00071 1.5E-08 47.5 8.0 64 25-95 3-71 (72)
176 TIGR02189 GlrX-like_plant Glut 97.5 0.00056 1.2E-08 51.5 7.5 54 25-85 10-70 (99)
177 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00039 8.5E-09 58.8 7.3 26 20-45 76-101 (197)
178 cd03418 GRX_GRXb_1_3_like Glut 97.5 0.00055 1.2E-08 48.2 6.8 50 25-79 2-56 (75)
179 PHA03050 glutaredoxin; Provisi 97.4 0.00052 1.1E-08 52.6 6.4 64 11-80 5-75 (108)
180 cd03027 GRX_DEP Glutaredoxin ( 97.4 0.00078 1.7E-08 47.4 6.8 51 25-80 3-57 (73)
181 PF13848 Thioredoxin_6: Thiore 97.4 0.0036 7.8E-08 51.6 11.8 77 3-82 79-159 (184)
182 PF05768 DUF836: Glutaredoxin- 97.3 0.0011 2.3E-08 48.0 6.7 70 25-96 2-81 (81)
183 cd02981 PDI_b_family Protein D 97.2 0.0057 1.2E-07 45.1 10.4 73 3-84 1-74 (97)
184 PF01216 Calsequestrin: Calseq 97.2 0.0049 1.1E-07 55.9 11.1 96 3-102 36-147 (383)
185 TIGR03143 AhpF_homolog putativ 97.2 0.0026 5.7E-08 62.4 10.2 95 9-103 354-458 (555)
186 cd02983 P5_C P5 family, C-term 97.2 0.014 3E-07 46.2 12.3 99 3-103 4-119 (130)
187 PF13462 Thioredoxin_4: Thiore 97.1 0.0073 1.6E-07 48.7 10.8 41 20-60 11-54 (162)
188 TIGR00365 monothiol glutaredox 97.1 0.0035 7.5E-08 47.0 8.2 63 10-80 3-73 (97)
189 KOG2603|consensus 97.0 0.0054 1.2E-07 54.8 9.4 97 3-100 42-167 (331)
190 PRK10638 glutaredoxin 3; Provi 97.0 0.0029 6.3E-08 45.7 6.5 54 25-85 4-61 (83)
191 COG0695 GrxC Glutaredoxin and 97.0 0.0028 6.1E-08 45.7 6.2 51 25-80 3-59 (80)
192 cd02972 DsbA_family DsbA famil 96.9 0.0031 6.8E-08 45.7 6.5 58 25-82 1-91 (98)
193 cd03023 DsbA_Com1_like DsbA fa 96.9 0.0025 5.3E-08 50.8 6.3 41 20-60 4-44 (154)
194 cd03028 GRX_PICOT_like Glutare 96.9 0.0071 1.5E-07 44.5 8.2 65 22-93 8-82 (90)
195 PRK11657 dsbG disulfide isomer 96.8 0.0078 1.7E-07 53.0 8.7 30 20-49 116-145 (251)
196 cd03072 PDI_b'_ERp44 PDIb' fam 96.6 0.034 7.3E-07 42.7 10.0 89 8-100 5-109 (111)
197 PF07449 HyaE: Hydrogenase-1 e 96.5 0.004 8.6E-08 47.5 4.5 79 3-85 11-93 (107)
198 PRK10824 glutaredoxin-4; Provi 96.5 0.01 2.2E-07 45.9 6.8 64 9-80 5-76 (115)
199 cd03073 PDI_b'_ERp72_ERp57 PDI 96.0 0.064 1.4E-06 41.2 8.9 67 32-98 29-110 (111)
200 PF07738 Sad1_UNC: Sad1 / UNC- 96.0 0.11 2.4E-06 41.1 10.3 87 158-257 34-134 (135)
201 PRK12759 bifunctional gluaredo 95.9 0.02 4.3E-07 54.1 6.8 51 25-80 4-66 (410)
202 PTZ00062 glutaredoxin; Provisi 95.7 0.054 1.2E-06 46.2 7.9 45 31-80 126-174 (204)
203 COG1225 Bcp Peroxiredoxin [Pos 95.6 0.13 2.8E-06 41.9 9.2 47 16-62 25-74 (157)
204 cd08366 APC10 APC10 subunit of 95.5 0.27 5.8E-06 39.3 10.8 113 136-256 19-139 (139)
205 PF07912 ERp29_N: ERp29, N-ter 95.1 0.62 1.3E-05 36.3 11.2 87 8-98 10-118 (126)
206 cd08667 APC10-ZZEF1 APC10/DOC1 95.1 0.35 7.6E-06 38.2 10.1 111 137-256 16-131 (131)
207 cd03067 PDI_b_PDIR_N PDIb fami 94.9 0.33 7.1E-06 36.5 8.7 79 4-85 4-90 (112)
208 KOG1752|consensus 94.8 0.15 3.2E-06 38.7 7.0 64 10-80 5-73 (104)
209 COG5156 DOC1 Anaphase-promotin 94.7 0.31 6.7E-06 39.3 8.7 123 125-257 31-163 (189)
210 cd03019 DsbA_DsbA DsbA family, 94.7 0.061 1.3E-06 44.0 5.0 41 20-60 14-55 (178)
211 KOG3437|consensus 94.6 0.92 2E-05 37.4 11.3 125 127-259 29-160 (184)
212 cd02978 KaiB_like KaiB-like fa 94.5 0.16 3.6E-06 35.7 6.0 58 24-81 3-62 (72)
213 cd03066 PDI_b_Calsequestrin_mi 94.1 1.1 2.4E-05 33.4 10.5 73 2-83 1-75 (102)
214 cd03069 PDI_b_ERp57 PDIb famil 93.6 1.1 2.3E-05 33.7 9.6 72 2-83 1-73 (104)
215 cd02974 AhpF_NTD_N Alkyl hydro 93.5 1.6 3.5E-05 32.4 10.1 64 9-84 7-70 (94)
216 cd08665 APC10-CUL7 APC10-like 93.5 2.3 4.9E-05 33.6 11.3 111 136-256 15-131 (131)
217 cd08159 APC10-like APC10-like 93.2 1.4 3E-05 34.7 9.9 110 136-255 15-129 (129)
218 PRK09301 circadian clock prote 93.1 0.32 6.9E-06 36.7 5.8 61 21-81 5-67 (103)
219 cd03013 PRX5_like Peroxiredoxi 93.0 0.21 4.7E-06 40.5 5.3 51 22-72 31-88 (155)
220 TIGR02654 circ_KaiB circadian 93.0 0.36 7.8E-06 35.3 5.8 60 22-81 3-64 (87)
221 cd03041 GST_N_2GST_N GST_N fam 92.8 0.93 2E-05 31.8 7.7 67 26-97 3-75 (77)
222 cd03031 GRX_GRX_like Glutaredo 92.8 0.47 1E-05 38.3 6.8 50 26-80 3-66 (147)
223 PRK10954 periplasmic protein d 92.7 0.16 3.4E-06 43.3 4.2 42 20-61 36-81 (207)
224 COG1331 Highly conserved prote 92.5 0.55 1.2E-05 46.6 8.1 75 9-85 33-120 (667)
225 cd03040 GST_N_mPGES2 GST_N fam 92.4 1.5 3.3E-05 30.5 8.4 69 26-100 3-77 (77)
226 PF03256 APC10: Anaphase-promo 91.5 1.1 2.3E-05 37.9 7.7 117 136-260 46-170 (193)
227 cd03060 GST_N_Omega_like GST_N 91.1 0.91 2E-05 31.2 6.0 52 26-80 2-54 (71)
228 PF13848 Thioredoxin_6: Thiore 90.9 1.7 3.6E-05 35.5 8.4 58 38-99 7-75 (184)
229 cd08664 APC10-HERC2 APC10-like 90.8 5.5 0.00012 32.2 10.8 109 136-254 39-151 (152)
230 KOG2687|consensus 90.8 4.5 9.7E-05 38.0 11.7 89 158-260 306-412 (414)
231 cd08365 APC10-like1 APC10-like 90.6 6 0.00013 31.3 10.7 110 136-254 16-130 (131)
232 cd02977 ArsC_family Arsenate R 90.3 0.35 7.6E-06 36.4 3.5 34 26-64 2-35 (105)
233 KOG2640|consensus 89.8 0.14 3.1E-06 45.9 1.0 82 19-100 74-163 (319)
234 PF09673 TrbC_Ftype: Type-F co 89.3 1.3 2.9E-05 33.9 6.0 71 9-83 10-80 (113)
235 PF06053 DUF929: Domain of unk 89.1 1.5 3.2E-05 38.6 6.9 59 19-83 56-114 (249)
236 cd08666 APC10-HECTD3 APC10-lik 88.9 10 0.00022 30.1 11.2 110 136-255 20-134 (134)
237 PRK15317 alkyl hydroperoxide r 88.4 4 8.8E-05 39.7 10.2 82 9-102 7-97 (517)
238 PF13417 GST_N_3: Glutathione 87.9 7.1 0.00015 27.0 8.8 69 28-101 2-73 (75)
239 cd03059 GST_N_SspA GST_N famil 87.3 5.2 0.00011 27.2 7.6 66 26-96 2-70 (73)
240 PRK01655 spxA transcriptional 87.2 1.2 2.7E-05 35.0 4.8 35 25-64 2-36 (131)
241 cd03037 GST_N_GRX2 GST_N famil 87.2 2.1 4.6E-05 29.2 5.5 63 27-95 3-69 (71)
242 COG3634 AhpF Alkyl hydroperoxi 87.1 3.6 7.7E-05 38.1 8.1 88 10-97 105-196 (520)
243 cd03035 ArsC_Yffb Arsenate Red 86.8 0.97 2.1E-05 34.2 3.8 34 26-64 2-35 (105)
244 cd03036 ArsC_like Arsenate Red 86.4 1.1 2.4E-05 34.2 4.0 34 26-64 2-35 (111)
245 TIGR01617 arsC_related transcr 86.2 1.5 3.2E-05 33.7 4.7 35 26-65 2-36 (117)
246 PHA03075 glutaredoxin-like pro 86.0 1.2 2.7E-05 34.2 3.9 30 22-51 2-31 (123)
247 PF07689 KaiB: KaiB domain; I 85.9 0.3 6.5E-06 35.4 0.6 53 28-80 3-57 (82)
248 cd03068 PDI_b_ERp72 PDIb famil 85.8 9.2 0.0002 28.8 8.8 74 2-83 1-75 (107)
249 TIGR03140 AhpF alkyl hydropero 84.6 9.5 0.00021 37.1 10.5 84 9-103 7-99 (515)
250 cd03051 GST_N_GTT2_like GST_N 84.6 3.1 6.7E-05 28.2 5.3 52 26-80 2-57 (74)
251 COG4545 Glutaredoxin-related p 83.2 2.9 6.3E-05 29.6 4.5 54 22-82 3-72 (85)
252 PF04592 SelP_N: Selenoprotein 82.9 2.1 4.6E-05 37.1 4.5 48 15-62 20-72 (238)
253 cd00570 GST_N_family Glutathio 82.7 2.2 4.9E-05 28.0 3.9 51 27-80 3-55 (71)
254 COG2761 FrnE Predicted dithiol 82.5 2.7 5.9E-05 36.3 5.0 38 65-104 175-218 (225)
255 PRK12559 transcriptional regul 81.6 2.7 5.8E-05 33.2 4.4 35 25-64 2-36 (131)
256 cd03032 ArsC_Spx Arsenate Redu 81.2 3.6 7.8E-05 31.4 4.9 35 25-64 2-36 (115)
257 cd03045 GST_N_Delta_Epsilon GS 81.0 4.9 0.00011 27.4 5.2 51 26-79 2-56 (74)
258 TIGR02742 TrbC_Ftype type-F co 80.8 4 8.8E-05 32.2 5.1 43 37-84 39-81 (130)
259 PF02630 SCO1-SenC: SCO1/SenC; 79.0 7 0.00015 32.2 6.3 45 19-63 50-99 (174)
260 PF00837 T4_deiodinase: Iodoth 77.2 2.5 5.5E-05 36.8 3.2 45 19-63 100-145 (237)
261 PRK13344 spxA transcriptional 75.2 5.7 0.00012 31.3 4.5 35 25-64 2-36 (132)
262 COG3019 Predicted metal-bindin 74.3 8.5 0.00018 30.7 5.2 71 23-98 26-103 (149)
263 PF13743 Thioredoxin_5: Thiore 71.5 8.2 0.00018 31.9 4.8 32 27-58 2-34 (176)
264 COG1651 DsbG Protein-disulfide 70.2 8.4 0.00018 33.2 4.9 38 22-59 85-122 (244)
265 cd03074 PDI_b'_Calsequestrin_C 70.1 47 0.001 25.4 10.4 88 11-98 10-119 (120)
266 COG1999 Uncharacterized protei 69.4 45 0.00098 28.3 9.1 66 18-83 64-139 (207)
267 PF06764 DUF1223: Protein of u 68.1 62 0.0013 27.5 9.5 74 27-103 4-102 (202)
268 COG1651 DsbG Protein-disulfide 68.1 5.9 0.00013 34.2 3.5 78 22-99 119-243 (244)
269 cd03055 GST_N_Omega GST_N fami 65.7 24 0.00051 25.3 5.8 53 25-80 19-72 (89)
270 PF01323 DSBA: DSBA-like thior 65.3 13 0.00028 30.4 4.9 37 24-60 1-37 (193)
271 COG3531 Predicted protein-disu 62.2 12 0.00026 31.7 4.0 35 65-99 165-209 (212)
272 cd03056 GST_N_4 GST_N family, 62.0 30 0.00065 23.1 5.5 51 27-80 3-57 (73)
273 PF04134 DUF393: Protein of un 60.3 13 0.00028 27.9 3.7 68 28-96 2-75 (114)
274 cd03052 GST_N_GDAP1 GST_N fami 59.8 42 0.00092 23.0 6.0 55 26-85 2-60 (73)
275 PF14652 DUF4457: Domain of un 59.3 46 0.00099 30.5 7.7 113 145-257 71-215 (329)
276 KOG2507|consensus 59.0 77 0.0017 30.1 8.9 80 19-98 16-110 (506)
277 PF00255 GSHPx: Glutathione pe 57.1 36 0.00079 25.8 5.6 45 17-62 17-63 (108)
278 cd03023 DsbA_Com1_like DsbA fa 54.7 14 0.00031 28.7 3.2 29 65-95 120-153 (154)
279 cd03033 ArsC_15kD Arsenate Red 53.9 22 0.00048 27.1 4.0 35 25-64 2-36 (113)
280 PF01323 DSBA: DSBA-like thior 53.2 22 0.00047 29.1 4.2 30 64-95 157-192 (193)
281 COG5429 Uncharacterized secret 52.0 65 0.0014 28.2 6.8 81 22-103 42-145 (261)
282 cd03025 DsbA_FrnE_like DsbA fa 50.9 20 0.00043 29.4 3.6 27 25-51 3-29 (193)
283 COG0278 Glutaredoxin-related p 50.1 63 0.0014 24.3 5.6 69 10-85 6-80 (105)
284 COG0450 AhpC Peroxiredoxin [Po 50.0 1E+02 0.0022 26.1 7.6 43 20-62 32-77 (194)
285 PF09822 ABC_transp_aux: ABC-t 49.7 1.8E+02 0.0039 25.4 11.8 61 13-74 17-88 (271)
286 KOG1422|consensus 49.7 1E+02 0.0023 26.4 7.6 69 32-103 20-89 (221)
287 PRK13730 conjugal transfer pil 45.1 33 0.00073 29.2 4.0 23 62-84 150-172 (212)
288 PRK10954 periplasmic protein d 45.0 35 0.00076 28.8 4.3 19 65-85 158-176 (207)
289 PF11287 DUF3088: Protein of u 44.7 89 0.0019 24.0 5.9 51 33-83 24-77 (112)
290 cd03054 GST_N_Metaxin GST_N fa 44.2 96 0.0021 20.8 6.3 55 30-95 13-69 (72)
291 cd03034 ArsC_ArsC Arsenate Red 43.0 37 0.00081 25.7 3.7 34 26-64 2-35 (112)
292 KOG2792|consensus 42.9 1.1E+02 0.0025 27.1 7.0 62 20-97 138-200 (280)
293 PF00754 F5_F8_type_C: F5/8 ty 42.2 1.4E+02 0.003 22.0 6.9 56 146-202 28-86 (129)
294 TIGR00014 arsC arsenate reduct 42.0 39 0.00085 25.7 3.7 34 26-64 2-35 (114)
295 COG3011 Predicted thiol-disulf 41.2 1.7E+02 0.0037 23.3 7.2 75 22-97 7-85 (137)
296 cd03024 DsbA_FrnE DsbA family, 40.4 22 0.00047 29.4 2.3 35 60-96 161-201 (201)
297 cd03049 GST_N_3 GST_N family, 39.0 1.2E+02 0.0026 20.3 5.6 53 27-80 3-56 (73)
298 PF06491 Disulph_isomer: Disul 37.3 2.1E+02 0.0045 22.7 9.1 96 2-99 17-132 (136)
299 KOG0911|consensus 36.3 1.9E+02 0.0041 25.0 7.3 51 30-85 151-203 (227)
300 cd03058 GST_N_Tau GST_N family 36.0 1.3E+02 0.0029 20.1 5.5 65 27-96 3-71 (74)
301 COG1393 ArsC Arsenate reductas 35.7 59 0.0013 25.0 3.8 22 25-46 3-24 (117)
302 PRK13602 putative ribosomal pr 35.0 1.4E+02 0.003 21.3 5.4 56 10-73 17-72 (82)
303 cd03022 DsbA_HCCA_Iso DsbA fam 34.5 42 0.00092 27.3 3.1 30 65-96 158-192 (192)
304 cd03019 DsbA_DsbA DsbA family, 33.6 57 0.0012 26.1 3.7 19 65-85 134-152 (178)
305 PF13743 Thioredoxin_5: Thiore 32.8 37 0.0008 28.0 2.4 20 64-83 137-156 (176)
306 TIGR03439 methyl_EasF probable 30.9 2E+02 0.0043 26.3 7.1 41 20-63 75-115 (319)
307 COG3411 Ferredoxin [Energy pro 30.2 96 0.0021 21.3 3.6 29 75-103 17-49 (64)
308 PF03960 ArsC: ArsC family; I 30.2 92 0.002 23.2 4.1 32 28-64 1-32 (110)
309 cd03025 DsbA_FrnE_like DsbA fa 29.9 49 0.0011 27.0 2.7 20 65-84 160-179 (193)
310 PF10807 DUF2541: Protein of u 29.9 76 0.0017 24.8 3.5 94 152-272 38-133 (134)
311 PF01834 XRCC1_N: XRCC1 N term 29.8 48 0.001 26.9 2.5 50 126-175 10-62 (153)
312 cd03053 GST_N_Phi GST_N family 28.8 1.8E+02 0.004 19.4 7.2 65 26-95 3-73 (76)
313 PF06953 ArsD: Arsenical resis 27.9 2.8E+02 0.0061 21.5 6.5 61 39-101 29-104 (123)
314 cd03061 GST_N_CLIC GST_N famil 27.7 2.4E+02 0.0053 20.5 7.6 66 30-100 19-87 (91)
315 KOG1651|consensus 27.6 1.5E+02 0.0033 24.4 5.0 46 17-62 30-77 (171)
316 PRK10853 putative reductase; P 25.5 1E+02 0.0022 23.6 3.6 34 25-63 2-35 (118)
317 PRK13669 hypothetical protein; 24.8 1.8E+02 0.0038 20.8 4.3 52 42-101 19-74 (78)
318 PRK10387 glutaredoxin 2; Provi 24.6 2.9E+02 0.0063 22.6 6.6 69 28-100 4-74 (210)
319 PF01216 Calsequestrin: Calseq 24.5 5.8E+02 0.013 23.8 12.8 100 3-103 251-372 (383)
320 KOG1731|consensus 23.5 1.2E+02 0.0026 30.0 4.4 74 51-125 214-296 (606)
321 cd03038 GST_N_etherase_LigE GS 23.3 2.6E+02 0.0056 19.3 5.2 64 30-97 13-81 (84)
322 PRK09481 sspA stringent starva 23.3 4.3E+02 0.0093 21.8 8.6 74 23-101 9-85 (211)
323 COG0386 BtuE Glutathione perox 23.2 1.6E+02 0.0034 24.1 4.3 46 16-62 20-67 (162)
324 PRK10026 arsenate reductase; P 23.0 1.4E+02 0.003 23.9 4.0 34 25-63 4-37 (141)
325 PF06165 Glyco_transf_36: Glyc 22.9 1.7E+02 0.0038 21.9 4.4 34 154-188 52-85 (110)
326 COG2077 Tpx Peroxiredoxin [Pos 22.7 2.5E+02 0.0054 22.9 5.3 62 22-83 46-110 (158)
327 KOG4277|consensus 22.5 6E+02 0.013 23.3 8.3 89 3-97 135-229 (468)
328 PF14424 Toxin-deaminase: The 21.8 3.9E+02 0.0086 21.0 6.4 31 26-59 99-131 (133)
329 TIGR01616 nitro_assoc nitrogen 21.5 1.7E+02 0.0036 22.8 4.2 33 25-62 3-35 (126)
No 1
>KOG0908|consensus
Probab=100.00 E-value=8.1e-75 Score=488.05 Aligned_cols=278 Identities=56% Similarity=0.907 Sum_probs=266.3
Q ss_pred CceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 1 M~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
|+|+.|.++++|+..+...+++.++|+|+|.|||||+++.|.+..|+.+|++..|++||+|++...+..+||.++|||++
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-------CCHhHHHHHHHHHhcCCC-CCCccccccCCccchhhhhcccccccCCCCCcccccccccCc-ceEEcc
Q psy543 81 FRNKI-------PDPNTLEAKIKQYYGVGE-ESGEESGVAGHMDLTSFIMKNQCEALNESDQHPFTNCLNTAE-TYLESD 151 (278)
Q Consensus 81 ~~~g~-------~~~~~l~~~i~~~~~~~~-~~~~~~~~~g~~~L~~~Id~~~~~~LNe~~~~~~~~~l~~~~-~~l~Sd 151 (278)
|++|. +++..|++.+.++++..+ ..+....+.|+++|..||++.+++|||+++.|.+.+.+++.. .+++||
T Consensus 81 f~ng~kid~~qGAd~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~gleclNqsddH~l~nalkk~~ss~lesD 160 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLECLNQSDDHFLKNALKKNFSSNLESD 160 (288)
T ss_pred EecCeEeeeecCCCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhcceeeccccccchHHHHhhccccceecc
Confidence 99998 899999999999998877 333455789999999999999999999999999999998853 789999
Q ss_pred CCcceEEEeeecCceeEEEEEEecC-CCCCCceEEEEEcCCCCcCCCcccCCCCceeEEeecCCCCCeeEecccccccCc
Q psy543 152 ADEQLILSFTFNQSVKIHSLKIKAP-KDKGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDGTPINLRYVKFQNV 230 (278)
Q Consensus 152 ~D~qLii~ipF~~~vk~~si~i~~~-~~~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l~~~~~~~~~~~l~~~kf~~v 230 (278)
||+|||++|||.++||+||+.|++| .+.+|+++|+|+|+|.++||+++++.+|+|.++|.+.++.+..++|||+|||||
T Consensus 161 ~DeQl~isi~fnq~vk~hS~a~k~p~~~~~Pk~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~~~~~~V~lryvkfqnV 240 (288)
T KOG0908|consen 161 CDEQLIISIPFNQAVKVHSIAIKGPANPLGPKTVKIFINQPRTMDFENAESFEPTQLLELTELDLQGLPVPLRYVKFQNV 240 (288)
T ss_pred cccceEEEeeccCccceeeeecCCCCCCCCCeeEEEEecCccccCcccccccCcccccchhhhhccCceEEeeeeeEEEe
Confidence 9999999999999999999999999 559999999999999999999999999999999988777788999999999999
Q ss_pred cEEEEEEecCCCCCceEEEEEEEEEeeecccCCccccccccCcCCCCC
Q psy543 231 QNLQIFVLDNQTEAETTVITHLALIGSPILTTKMSDFKRVAGEKGEAH 278 (278)
Q Consensus 231 ~~ltlf~~~n~~~~~~t~i~~i~~~G~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
++|+||++.|+||+++|||.|++++|+|+.++||+++||++|++||+|
T Consensus 241 ~sv~iFiq~n~gg~evtri~~~~~~GsPv~~t~m~~~krv~~k~g~~h 288 (288)
T KOG0908|consen 241 NSVQIFIQSNQGGEEVTRISKLGLFGSPVPTTNMNDFKRVEGKKGESH 288 (288)
T ss_pred eEEEEEEecCCCCcccceeeeeeeccccCCCCCCCcceecccccCCCC
Confidence 999999999999999999999999999999999999999999999998
No 2
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=100.00 E-value=5.8e-46 Score=301.19 Aligned_cols=142 Identities=49% Similarity=0.709 Sum_probs=104.8
Q ss_pred cchhhhhcccccccCCCCCcccc-cccccCc-----ceEEccCCcceEEEeeecCceeEEEEEEecC--CCCCCceEEEE
Q psy543 116 DLTSFIMKNQCEALNESDQHPFT-NCLNTAE-----TYLESDADEQLILSFTFNQSVKIHSLKIKAP--KDKGPKTLKLF 187 (278)
Q Consensus 116 ~L~~~Id~~~~~~LNe~~~~~~~-~~l~~~~-----~~l~Sd~D~qLii~ipF~~~vk~~si~i~~~--~~~~P~~ik~f 187 (278)
+|+.+||.++++|||++.++++. .+++... .+++||+|+|||++|||+++||||||.|+++ ++++|++||||
T Consensus 1 sL~~~Id~~~~~cLN~~~~~~~~~~l~k~~~~r~d~~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKlf 80 (152)
T PF06201_consen 1 SLYSYIDLDKVECLNEDDPHSARNNLFKPWDDRLDPPFLESDADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKLF 80 (152)
T ss_dssp ESCCCB-TTT-EECSS-TTS-SCCCCSTTS--TTS---EE-SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEEEEE
T ss_pred ChHHhCcccccEEEeCCCCCCccceeEcccccccCccccccCCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEEEEE
Confidence 58899999999999999999988 4554433 6999999999999999999999999999985 45999999999
Q ss_pred EcCCCCcCCCcccCCCCceeEEeecCCC-CCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEEEee
Q psy543 188 INQPKTLDFDAATSNQSVQQIELTEKDL-DGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGS 257 (278)
Q Consensus 188 ~N~~~~~~F~~~~~~~~~q~~~l~~~~~-~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~ 257 (278)
+|++.+|||+++++.+|+|+++|++.+. ++.+|+||++|||||++|||||++|+||++.|+|+||||+|+
T Consensus 81 ~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~ 151 (152)
T PF06201_consen 81 INQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKFVKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGE 151 (152)
T ss_dssp ES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--TTT-TTEEEEEEEEEEETT--SS-EESEEEEEEE
T ss_pred ECCCCCcCccccccCCCCceEEcCccccCCceEeeeeeeccCCccEEEEEEeCCcCCCccEEEEEEEEEee
Confidence 9943469999999999999999988433 567999999999999999999999999889999999999997
No 3
>KOG1730|consensus
Probab=100.00 E-value=2.9e-41 Score=270.06 Aligned_cols=153 Identities=31% Similarity=0.422 Sum_probs=135.8
Q ss_pred CccchhhhhcccccccCCCCCcc-------cccccccCcceEEccCCcceEEEeeecCceeEEEEEEec-CCCCCCceEE
Q psy543 114 HMDLTSFIMKNQCEALNESDQHP-------FTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKIKA-PKDKGPKTLK 185 (278)
Q Consensus 114 ~~~L~~~Id~~~~~~LNe~~~~~-------~~~~l~~~~~~l~Sd~D~qLii~ipF~~~vk~~si~i~~-~~~~~P~~ik 185 (278)
.++|+..||..++.||||+.+++ |..+.+. ..++|||+|+|||++|||+++|||++|+|.| |++++|..+|
T Consensus 23 ~ysLys~Idle~v~~LNEsv~gsgK~VFKpwe~R~d~-se~vESDaD~eLLfniPFtg~vkLkgI~I~g~~d~shP~~~r 101 (206)
T KOG1730|consen 23 AYSLYSRIDLEKVQTLNESVDGSGKSVFKPWEKRTDR-SEYVESDADEELLFNIPFTGNVKLKGISIMGEPDGSHPSKMR 101 (206)
T ss_pred cccceeEecHhHheecccccCCccccccchhhhhcch-hhhhhccCCceeEEeccccCceeEEEEEEEeCCCCCCchheE
Confidence 58999999999999999998875 4555444 5799999999999999999999999999997 5559999999
Q ss_pred EEEcCCCCcCCCcccCCCCceeEEeecCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEEEeeec------
Q psy543 186 LFINQPKTLDFDAATSNQSVQQIELTEKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPI------ 259 (278)
Q Consensus 186 ~f~N~~~~~~F~~~~~~~~~q~~~l~~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~~~------ 259 (278)
||+|||. |||||++. +|+|+|.|+.+--+..+||+|.+|||||.+|+|||+.|+| +|+|+|+||||||+-+
T Consensus 102 lFkNR~~-m~FdD~~~-~~dqef~lt~d~~g~iey~~K~s~f~nv~nLsi~f~~nfG-~D~TqI~YIGlRGeft~~~~h~ 178 (206)
T KOG1730|consen 102 LFKNREQ-MDFDDAEA-EPDQEFSLTRDLTGEIEYPTKISKFQNVHNLSIHFPKNFG-EDTTQIYYIGLRGEFTELFRHE 178 (206)
T ss_pred eecCCcc-CCcchhhc-CcceecceecccCceEEeccceeeeccceeEEEEeccccC-CCcceEEEEEecceeeehhcCC
Confidence 9999995 99999998 8999999988642446999999999999999999999997 8999999999999933
Q ss_pred -------ccCCccccccc
Q psy543 260 -------LTTKMSDFKRV 270 (278)
Q Consensus 260 -------~~~~~~~~~~~ 270 (278)
.++|++||++.
T Consensus 179 ~~i~~yea~a~~~dh~~~ 196 (206)
T KOG1730|consen 179 VAICNYEARANPADHKVH 196 (206)
T ss_pred ceEEEEeccCChhhCccc
Confidence 45699999865
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.88 E-value=8.9e-22 Score=151.65 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=73.0
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
+.++|++.+..+.++++||+|||+||+||+.|.|.|+++++++++ +.|++||++++++++++|+|.++||+++|++|+
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 357899999866679999999999999999999999999999986 689999999999999999999999999999997
No 5
>KOG0910|consensus
Probab=99.87 E-value=6e-22 Score=157.35 Aligned_cols=96 Identities=34% Similarity=0.700 Sum_probs=87.9
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
..+.+.++|++.+.++ +.||+|+|||+||+||+.+.|.++++..+|. .+.|++||.|++++++.+|+|.++||+++|+
T Consensus 45 ~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred ccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 4456889999988654 5999999999999999999999999999987 6999999999999999999999999999999
Q ss_pred CCC--------CCHhHHHHHHHHHhc
Q psy543 83 NKI--------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 83 ~g~--------~~~~~l~~~i~~~~~ 100 (278)
+|+ .+.+.|+++|+++++
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999 788899999998875
No 6
>KOG0907|consensus
Probab=99.87 E-value=1.9e-21 Score=148.47 Aligned_cols=82 Identities=50% Similarity=0.941 Sum_probs=74.9
Q ss_pred hccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-------CCHh
Q psy543 17 NNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI-------PDPN 89 (278)
Q Consensus 17 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~-------~~~~ 89 (278)
...++++++|+|||+|||||+.+.|.+++|+.+|+++.|++||+|++.++++.|+|.++|||+||++|+ ++.+
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 345569999999999999999999999999999999999999999999999999999999999999998 7777
Q ss_pred HHHHHHHHH
Q psy543 90 TLEAKIKQY 98 (278)
Q Consensus 90 ~l~~~i~~~ 98 (278)
++++.+.++
T Consensus 97 ~l~~~i~~~ 105 (106)
T KOG0907|consen 97 ELEKKIAKH 105 (106)
T ss_pred HHHHHHHhc
Confidence 777776653
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=4.2e-21 Score=146.44 Aligned_cols=91 Identities=24% Similarity=0.502 Sum_probs=82.0
Q ss_pred cChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH---hHHHHcCCCcccEEEEEeC
Q psy543 7 NSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ---DLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 7 ~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~ 83 (278)
.+.++|++.+.+.+++++||+|||+||++|+.+.|.|++++++++++.|+.||+++++ +++++|+|.++||+++|++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3678999999877789999999999999999999999999999988999999999884 7999999999999999999
Q ss_pred CC-------CCHhHHHHHHHH
Q psy543 84 KI-------PDPNTLEAKIKQ 97 (278)
Q Consensus 84 g~-------~~~~~l~~~i~~ 97 (278)
|+ ..+++|++.+.+
T Consensus 81 G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCCCHHHHHHHHHh
Confidence 98 667777776654
No 8
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=7.8e-21 Score=145.46 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=73.5
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
.++|++.+.+.++++|||+|||+||+||+.|.|.|++++++|++ +.|++||+|+.+++++.|+|.++||++||++|+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 57888888877789999999999999999999999999999998 999999999999999999999999999999998
No 9
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.83 E-value=4.2e-20 Score=147.61 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=87.8
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEE-E
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFI-F 80 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~-~ 80 (278)
+..|.+.++|++.+...++++|||+|||+||+||+.+.|.|+++++++++ +.|++||+|+++++++.|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 56789999999999867789999999999999999999999999999987 788999999999999999999776655 9
Q ss_pred EeCCC-----------------CCHhHHHHHHHHHhcCCC
Q psy543 81 FRNKI-----------------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 81 ~~~g~-----------------~~~~~l~~~i~~~~~~~~ 103 (278)
|++|+ .+.++|...++.++.++.
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 98887 345677777777765544
No 10
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.82 E-value=2.3e-19 Score=135.46 Aligned_cols=93 Identities=40% Similarity=0.757 Sum_probs=85.7
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
+.+ +.++|++.+.+ +++++||+||++||++|+.+.|.|++++++++ ++.|+.||+++++.++++|+|.++||+++|+
T Consensus 2 ~~l-t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 2 IVL-TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EEE-STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred EEC-CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 445 67999999976 45999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCC--------CCHhHHHHHHHHH
Q psy543 83 NKI--------PDPNTLEAKIKQY 98 (278)
Q Consensus 83 ~g~--------~~~~~l~~~i~~~ 98 (278)
+|+ .+.++|.++|+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 998 5889999998874
No 11
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.82 E-value=1.7e-19 Score=139.96 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=77.5
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
++..|++.++|.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|++||++++++++++|+|.++||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 47889898999999964 3799999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|+
T Consensus 83 k~G~ 86 (113)
T cd02989 83 KNGK 86 (113)
T ss_pred ECCE
Confidence 9996
No 12
>PHA02278 thioredoxin-like protein
Probab=99.82 E-value=1.3e-19 Score=138.12 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=69.6
Q ss_pred cChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCC----HhHHHHcCCCcccEEEEE
Q psy543 7 NSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQN----QDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 7 ~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~ 81 (278)
++.++|++.+. +++++||+|||+||+||+.|.|.++++++++. ++.|+++|++.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 46789999884 45899999999999999999999999998854 578999999986 689999999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|+
T Consensus 80 k~G~ 83 (103)
T PHA02278 80 KDGQ 83 (103)
T ss_pred ECCE
Confidence 9997
No 13
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.82 E-value=2.2e-19 Score=136.65 Aligned_cols=91 Identities=24% Similarity=0.531 Sum_probs=80.9
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+.+.|.++|++++. ++++++|+|||+||++|+.+.|.+++++++++ .+.|+.+|++ +++++++|+|+++||+++|
T Consensus 2 ~~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 2 VEINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred eEccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 45789999999885 45899999999999999999999999999996 4789999999 7889999999999999999
Q ss_pred eCCC-------CCHhHHHHHHHH
Q psy543 82 RNKI-------PDPNTLEAKIKQ 97 (278)
Q Consensus 82 ~~g~-------~~~~~l~~~i~~ 97 (278)
++|+ .+.+.+.++|++
T Consensus 79 ~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred ECCEEEEEEecCChHHHHHHHhh
Confidence 9998 577777777764
No 14
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=4.2e-19 Score=137.44 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=72.1
Q ss_pred eEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHH-HHcCCCcccEEE
Q psy543 3 IIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLA-AAQGVSAMPTFI 79 (278)
Q Consensus 3 v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~-~~~~v~~~Pt~~ 79 (278)
|.++ +.++|.+.+. ..+++++||+|||+||++|+.+.|.++++++++++ +.|++||++++++++ ++|+|.++||++
T Consensus 11 v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 11 VLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred eEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEE
Confidence 5666 5688888632 34569999999999999999999999999999974 899999999999999 589999999999
Q ss_pred EEeCCC
Q psy543 80 FFRNKI 85 (278)
Q Consensus 80 ~~~~g~ 85 (278)
+|++|+
T Consensus 90 lf~~g~ 95 (113)
T cd03006 90 LYYRSR 95 (113)
T ss_pred EEECCc
Confidence 999885
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.81 E-value=2.9e-19 Score=135.62 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=69.9
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC-CCHhHHHHcCCCcccEEEEEeCCC
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD-QNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
..+.+++...+|++++|+|||+||++|+++.|.|++++++++++.++.||.+ .++.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~ 83 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTP 83 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCc
Confidence 3566677777899999999999999999999999999999999999999999 899999999999999999999863
No 16
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=3.8e-19 Score=137.83 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=75.1
Q ss_pred ceEEecChhHHHHHHhccC-CCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 2 SIIVINSDAHFHTEMNNCG-TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
.+.+|++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++|+++.|++||++++ .++++|+|.++||+++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 3677866 89999886542 5899999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCC
Q psy543 81 FRNKI 85 (278)
Q Consensus 81 ~~~g~ 85 (278)
|++|+
T Consensus 83 f~~G~ 87 (113)
T cd02957 83 YKNGE 87 (113)
T ss_pred EECCE
Confidence 99997
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=3.6e-19 Score=138.99 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=84.2
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChh--hH--HHHHHHHHHHHHC--C-CcEEEEEECCCCHhHHHHcCCCcc
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGP--CQ--RIAPVFEQLSRKY--P-NAAFFKVDVDQNQDLAAAQGVSAM 75 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~--~-~v~~~~vd~d~~~~l~~~~~v~~~ 75 (278)
+..+ ++++|++.+.+++ .++|++||++||+| |+ ++.|.+.+++.++ + ++.|++||++++++++++|+|+++
T Consensus 11 v~~l-t~~nF~~~v~~~~-~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 11 VIDL-NEKNYKQVLKKYD-VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred eeeC-ChhhHHHHHHhCC-ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 4555 5799999987654 89999999999988 99 9999999999998 5 799999999999999999999999
Q ss_pred cEEEEEeCCC-------CCHhHHHHHHHHHh
Q psy543 76 PTFIFFRNKI-------PDPNTLEAKIKQYY 99 (278)
Q Consensus 76 Pt~~~~~~g~-------~~~~~l~~~i~~~~ 99 (278)
||+++|++|+ .+.+.|.++|++++
T Consensus 89 PTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 9999999997 67788888888764
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.80 E-value=4.5e-19 Score=132.97 Aligned_cols=76 Identities=29% Similarity=0.492 Sum_probs=70.1
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
++|++.+.++.++++||+|||+||++|+++.|.++++++.++ .+.++.||++.++.++++|+|.++||+++|++|+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE
Confidence 367888876667999999999999999999999999999997 5889999999999999999999999999999886
No 19
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-19 Score=156.34 Aligned_cols=98 Identities=30% Similarity=0.564 Sum_probs=87.8
Q ss_pred eEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 3 IIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 3 v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
++.+ |..+|++.+. .+..+||||+||+|||++|+.+.|.+++++.+|. .+.+++||||.++.++.+|||+++||++.
T Consensus 25 I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 4555 5688988664 4555699999999999999999999999999998 69999999999999999999999999999
Q ss_pred EeCCC--------CCHhHHHHHHHHHhcC
Q psy543 81 FRNKI--------PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 81 ~~~g~--------~~~~~l~~~i~~~~~~ 101 (278)
|++|+ ...+.++++|+++++.
T Consensus 104 f~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999 4566999999999987
No 20
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.79 E-value=1.1e-18 Score=132.28 Aligned_cols=80 Identities=20% Similarity=0.507 Sum_probs=72.6
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+..+ +.++|++.+.. +++++|+|||+||++|+++.|.+++++++++ .+.|++||+++++.++++|+|.++||+++|
T Consensus 3 ~~~l-~~~~f~~~v~~--~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 3 IVTL-DRGDFDAAVNS--GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred eEEc-CHhhHHHHhcC--CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 4455 67899998843 4899999999999999999999999999997 589999999999999999999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|+
T Consensus 80 ~~g~ 83 (101)
T cd03003 80 PSGM 83 (101)
T ss_pred cCCC
Confidence 9885
No 21
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=1.1e-18 Score=132.88 Aligned_cols=80 Identities=26% Similarity=0.539 Sum_probs=72.9
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+..+ +.++|++.+.+. +++++|+|||+||++|+.+.|.++++++++. .+.|++||++++++++++|+|.++||+++|
T Consensus 3 v~~l-~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 3 VITL-TPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred ceEc-CHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 4566 678999988654 4799999999999999999999999999986 689999999999999999999999999999
Q ss_pred eCC
Q psy543 82 RNK 84 (278)
Q Consensus 82 ~~g 84 (278)
++|
T Consensus 81 ~~g 83 (104)
T cd03004 81 PGN 83 (104)
T ss_pred cCC
Confidence 987
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=7.9e-19 Score=135.67 Aligned_cols=90 Identities=16% Similarity=0.343 Sum_probs=77.7
Q ss_pred ChhHHHH-HHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 8 SDAHFHT-EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 8 s~~~f~~-~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+.++|++ ++....+++++|+|||+||++|+.+.|.+++++++++ ++.+++||++.++.++++|+|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 6677876 4444567999999999999999999999999999996 589999999999999999999999999999998
Q ss_pred C--------CCHhHHHHHHHH
Q psy543 85 I--------PDPNTLEAKIKQ 97 (278)
Q Consensus 85 ~--------~~~~~l~~~i~~ 97 (278)
+ .+.+.|.++|++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhc
Confidence 7 455666666654
No 23
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=1.9e-18 Score=143.92 Aligned_cols=83 Identities=16% Similarity=0.321 Sum_probs=76.0
Q ss_pred ceEEecChhHHHHHHhcc-CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 2 SIIVINSDAHFHTEMNNC-GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
.+..|++.++|.+.+... .+++|||+||++||++|+.+.|.|++|+++|+.+.|++||++.. .++.+|+|.++||+++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlll 141 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLV 141 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEE
Confidence 467887779999988654 34699999999999999999999999999999999999999988 8999999999999999
Q ss_pred EeCCC
Q psy543 81 FRNKI 85 (278)
Q Consensus 81 ~~~g~ 85 (278)
|++|+
T Consensus 142 yk~G~ 146 (175)
T cd02987 142 YKGGE 146 (175)
T ss_pred EECCE
Confidence 99997
No 24
>PTZ00051 thioredoxin; Provisional
Probab=99.78 E-value=2.5e-18 Score=129.24 Aligned_cols=82 Identities=41% Similarity=0.885 Sum_probs=77.3
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+++++++.++|.+++.. +++++|+||++||++|+.+.|.+++++++++++.|+.+|+++++.++++|+|.++||+++|
T Consensus 1 ~v~~i~~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred CeEEecCHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 57889999999998854 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|+
T Consensus 79 ~~g~ 82 (98)
T PTZ00051 79 KNGS 82 (98)
T ss_pred eCCe
Confidence 9987
No 25
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.77 E-value=4.4e-18 Score=127.64 Aligned_cols=88 Identities=32% Similarity=0.761 Sum_probs=77.6
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHH-CCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRK-YPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI- 85 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~- 85 (278)
|.++|++.+....+++++|+||++||++|+.+.|.|++++++ ++++.++++|++++++++++|++.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 467899999876679999999999999999999999999999 568999999999999999999999999999999987
Q ss_pred ------CCHhHHHHHH
Q psy543 86 ------PDPNTLEAKI 95 (278)
Q Consensus 86 ------~~~~~l~~~i 95 (278)
.+.++|.+.|
T Consensus 81 ~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEeCCCHHHHHHhh
Confidence 4455555443
No 26
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=4.8e-18 Score=130.36 Aligned_cols=80 Identities=31% Similarity=0.639 Sum_probs=71.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC----C---CcEEEEEECCCCHhHHHHcCCCcc
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----P---NAAFFKVDVDQNQDLAAAQGVSAM 75 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~---~v~~~~vd~d~~~~l~~~~~v~~~ 75 (278)
+.++ +.++|++.+.. +++++|+|||+||++|+++.|.++++++.+ + .+.+++||++.+++++++|+|+++
T Consensus 3 v~~l-~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 3 IVSL-TSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred eEEc-CHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 5566 57899998843 489999999999999999999999998864 2 389999999999999999999999
Q ss_pred cEEEEEeCCC
Q psy543 76 PTFIFFRNKI 85 (278)
Q Consensus 76 Pt~~~~~~g~ 85 (278)
||+++|++|+
T Consensus 80 Ptl~~~~~g~ 89 (108)
T cd02996 80 PTLKLFRNGM 89 (108)
T ss_pred CEEEEEeCCc
Confidence 9999999985
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=9.2e-18 Score=128.86 Aligned_cols=95 Identities=31% Similarity=0.668 Sum_probs=82.7
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
|+++ +.++|++.+.+ .+++++|+||++||++|+.+.|.+++++++++ ++.++.+|++..+.++++|+|.++||+++|
T Consensus 5 v~~~-~~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 5 IIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred ceee-ChhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 6777 45788876643 35899999999999999999999999999996 689999999999999999999999999999
Q ss_pred eCCC--------CCHhHHHHHHHHHh
Q psy543 82 RNKI--------PDPNTLEAKIKQYY 99 (278)
Q Consensus 82 ~~g~--------~~~~~l~~~i~~~~ 99 (278)
++|+ .+.+.|+++|++.+
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9988 46677777777654
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.76 E-value=8e-18 Score=127.37 Aligned_cols=78 Identities=24% Similarity=0.529 Sum_probs=69.7
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
+.++ +.++|++.++ ++ ++|+|||+||++|+.+.|.++++++.+. ++.++.+|+++++.++++|+|.++||+++
T Consensus 3 v~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 3 VVEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred eEEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 5677 5789998773 23 7899999999999999999999999875 68999999999999999999999999999
Q ss_pred EeCCC
Q psy543 81 FRNKI 85 (278)
Q Consensus 81 ~~~g~ 85 (278)
|++|+
T Consensus 78 ~~~g~ 82 (101)
T cd02994 78 AKDGV 82 (101)
T ss_pred eCCCC
Confidence 99885
No 29
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.74 E-value=2.5e-17 Score=126.16 Aligned_cols=81 Identities=26% Similarity=0.571 Sum_probs=72.8
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCC--CHhHHHHcCCCcccEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQ--NQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~ 79 (278)
+.++ +.++|++.+.+. +++++|+|||+||++|+++.|.+++++++++ .+.++.+|++. ++.++++|+|.++||++
T Consensus 2 v~~l-~~~~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYEL-TPKNFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEc-chhhHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 5566 568999988754 5889999999999999999999999999987 58999999999 88999999999999999
Q ss_pred EEeCCC
Q psy543 80 FFRNKI 85 (278)
Q Consensus 80 ~~~~g~ 85 (278)
+|++|+
T Consensus 80 ~~~~~~ 85 (109)
T cd03002 80 VFRPPK 85 (109)
T ss_pred EEeCCC
Confidence 999873
No 30
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=1.6e-17 Score=134.92 Aligned_cols=82 Identities=30% Similarity=0.516 Sum_probs=74.3
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCc------
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSA------ 74 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~------ 74 (278)
+.++ +.++|++.+....+++++|+|||+||++|+++.|.+++++++++ ++.|++||++++++++++|+|.+
T Consensus 30 v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~ 108 (152)
T cd02962 30 IKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQ 108 (152)
T ss_pred cEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCC
Confidence 4455 56889998876667899999999999999999999999999986 59999999999999999999998
Q ss_pred ccEEEEEeCCC
Q psy543 75 MPTFIFFRNKI 85 (278)
Q Consensus 75 ~Pt~~~~~~g~ 85 (278)
+||+++|++|+
T Consensus 109 ~PT~ilf~~Gk 119 (152)
T cd02962 109 LPTIILFQGGK 119 (152)
T ss_pred CCEEEEEECCE
Confidence 99999999986
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=99.73 E-value=4.1e-17 Score=131.13 Aligned_cols=89 Identities=26% Similarity=0.610 Sum_probs=80.0
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI- 85 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~- 85 (278)
+.++|++.+. ++++++|+||++||++|+.+.|.|.++++++. ++.|+++|+++++.++++|+|.++||+++|++|+
T Consensus 41 ~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 41 TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 6788998875 35999999999999999999999999999886 6999999999999999999999999999999988
Q ss_pred -------CCHhHHHHHHHHH
Q psy543 86 -------PDPNTLEAKIKQY 98 (278)
Q Consensus 86 -------~~~~~l~~~i~~~ 98 (278)
.+.+.++++|+++
T Consensus 119 v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 119 VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEcCCCCHHHHHHHHHHh
Confidence 5667777777765
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=4.8e-17 Score=122.90 Aligned_cols=79 Identities=30% Similarity=0.692 Sum_probs=70.4
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
+..+ +.++|++.+.+ ++++|+|||+||++|+.+.|.++++++++. ++.++.+|++.++.++++|+|.++||+
T Consensus 2 ~~~l-~~~~f~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLEL-TEDNFDHHIAE---GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeEC-CHHHHHHHhhc---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 4556 56889998853 359999999999999999999999999885 589999999999999999999999999
Q ss_pred EEEeCCC
Q psy543 79 IFFRNKI 85 (278)
Q Consensus 79 ~~~~~g~ 85 (278)
++|++|+
T Consensus 78 ~~~~~g~ 84 (102)
T cd03005 78 LLFKDGE 84 (102)
T ss_pred EEEeCCC
Confidence 9999885
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.72 E-value=9.7e-17 Score=121.42 Aligned_cols=81 Identities=28% Similarity=0.579 Sum_probs=72.7
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
|.++ +.++|++.+.+. +++++|+||++||++|+++.|.+.+++++++ .+.++.+|+++++.++++|+|+++||+++|
T Consensus 2 v~~l-~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVEL-TDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEc-CHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 4556 678999988654 4789999999999999999999999999986 699999999999999999999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|+
T Consensus 80 ~~~~ 83 (103)
T cd03001 80 GAGK 83 (103)
T ss_pred CCCC
Confidence 9883
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=9.1e-17 Score=138.42 Aligned_cols=99 Identities=21% Similarity=0.448 Sum_probs=87.3
Q ss_pred eEEecChhHHHHHHhcc---CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNC---GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~---~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
+.++ +.++|++.+... .+++++|+|||+||++|+++.|.+++++++++ .+.++.+|++++++++++|+|.++||+
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 4556 678999988643 35899999999999999999999999999998 488999999999999999999999999
Q ss_pred EEEeCCC--------CCHhHHHHHHHHHhcCC
Q psy543 79 IFFRNKI--------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 79 ~~~~~g~--------~~~~~l~~~i~~~~~~~ 102 (278)
++|++|+ .+.++|.+++.+.+...
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999888 57889999998887544
No 35
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=1.4e-16 Score=119.55 Aligned_cols=90 Identities=39% Similarity=0.799 Sum_probs=78.8
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI- 85 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~- 85 (278)
+.++|.+.+... +++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 2 TDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 467888888654 4799999999999999999999999999887 6999999999999999999999999999999887
Q ss_pred -------CCHhHHHHHHHHH
Q psy543 86 -------PDPNTLEAKIKQY 98 (278)
Q Consensus 86 -------~~~~~l~~~i~~~ 98 (278)
.+.+.+..+|++.
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 4556677776654
No 36
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=6.7e-17 Score=123.82 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=70.1
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCC--ChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASW--CGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+..+|++.+ ..+.++||.||++| |++|+.+.|.|++++++|++ +.|++||+++++.++.+|+|+++||+++|++|
T Consensus 16 ~~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 16 DAATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred ccccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 567888888 34588999999997 99999999999999999985 78999999999999999999999999999999
Q ss_pred C
Q psy543 85 I 85 (278)
Q Consensus 85 ~ 85 (278)
+
T Consensus 94 k 94 (111)
T cd02965 94 R 94 (111)
T ss_pred E
Confidence 7
No 37
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.70 E-value=1.5e-16 Score=122.48 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=70.7
Q ss_pred eEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC-CHhHHH-HcCCCcccE
Q psy543 3 IIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ-NQDLAA-AQGVSAMPT 77 (278)
Q Consensus 3 v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-~~~l~~-~~~v~~~Pt 77 (278)
|.++ +.++|++++. ..++++++|.||++||++|+++.|.+.++++.+. ++.++.||++. ...++. .|+|.++||
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 5666 5679998875 3456999999999999999999999999999986 48999999998 577786 599999999
Q ss_pred EEEEeCCC
Q psy543 78 FIFFRNKI 85 (278)
Q Consensus 78 ~~~~~~g~ 85 (278)
+++|++|.
T Consensus 82 i~~f~~~~ 89 (109)
T cd02993 82 ILFFPKNS 89 (109)
T ss_pred EEEEcCCC
Confidence 99998763
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.69 E-value=2e-16 Score=119.22 Aligned_cols=88 Identities=32% Similarity=0.622 Sum_probs=76.3
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+.++|++.+. ++++++|+||++||++|+.+.|.++++++.+. ++.++.+|+++++.++++|+|.++|++++|++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4678998885 56899999999999999999999999999887 499999999999999999999999999999877
Q ss_pred C--------CCHhHHHHHHHH
Q psy543 85 I--------PDPNTLEAKIKQ 97 (278)
Q Consensus 85 ~--------~~~~~l~~~i~~ 97 (278)
+ .+.+.|..+|++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred CcceeecCCCCHHHHHHHHHh
Confidence 6 345555555554
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=3e-16 Score=126.55 Aligned_cols=93 Identities=23% Similarity=0.432 Sum_probs=79.1
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCC--HhHHHHcCCCcccEEEEEe-CC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQN--QDLAAAQGVSAMPTFIFFR-NK 84 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~-~g 84 (278)
..+|++.+. .++++||+|||+||++|+.+.|.+.+++++|. .+.|+.||++.. ..++++|+|.++||+++|+ +|
T Consensus 10 ~~~~~~a~~--~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 10 STPPEVALS--NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred cCCHHHHHh--CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 445777663 45899999999999999999999999999996 578888888765 5789999999999999995 67
Q ss_pred C--------CCHhHHHHHHHHHhcCCC
Q psy543 85 I--------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 85 ~--------~~~~~l~~~i~~~~~~~~ 103 (278)
+ ...++|++.|++++....
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 7 567889999999987654
No 40
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.69 E-value=2.1e-16 Score=123.12 Aligned_cols=81 Identities=20% Similarity=0.464 Sum_probs=73.9
Q ss_pred EecChhHHHHHHhccCCCeEEEEEEc-------CCChhhHHHHHHHHHHHHHCC-CcEEEEEECCC-------CHhHHHH
Q psy543 5 VINSDAHFHTEMNNCGTKLVVVDFTA-------SWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQ-------NQDLAAA 69 (278)
Q Consensus 5 ~i~s~~~f~~~l~~~~~k~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~-------~~~l~~~ 69 (278)
.+.+.++|.+.+...++++++|+||| +||++|+.+.|.+++++.+++ ++.|++||+++ +.+++.+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 46788999999987667999999999 999999999999999999998 79999999976 4589999
Q ss_pred cCCC-cccEEEEEeCCC
Q psy543 70 QGVS-AMPTFIFFRNKI 85 (278)
Q Consensus 70 ~~v~-~~Pt~~~~~~g~ 85 (278)
|+|. ++||+++|++|+
T Consensus 85 ~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred cCcccCCCEEEEEcCCc
Confidence 9999 999999998876
No 41
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=2.8e-16 Score=122.01 Aligned_cols=82 Identities=30% Similarity=0.580 Sum_probs=71.4
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECC--CCHhHHHHcCCCcc
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVD--QNQDLAAAQGVSAM 75 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d--~~~~l~~~~~v~~~ 75 (278)
+++++ +.++|++.+.+.. ++++|+||++||++|+.+.|.|+++++++. .+.|+.+||+ .++.++++|+|+++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 79 (114)
T cd02992 2 PVIVL-DAASFNSALLGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY 79 (114)
T ss_pred CeEEC-CHHhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence 35666 5789999987654 899999999999999999999999999774 3889999985 46789999999999
Q ss_pred cEEEEEeCCC
Q psy543 76 PTFIFFRNKI 85 (278)
Q Consensus 76 Pt~~~~~~g~ 85 (278)
||+++|++|.
T Consensus 80 Pt~~lf~~~~ 89 (114)
T cd02992 80 PTLRYFPPFS 89 (114)
T ss_pred CEEEEECCCC
Confidence 9999999875
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.69 E-value=1.7e-16 Score=120.98 Aligned_cols=86 Identities=22% Similarity=0.505 Sum_probs=71.6
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+++|++.. ++++++|.|||+||++|+.+.|.++++++++. ++.++.+|++..+.++++|+|.++||+++|++|
T Consensus 6 ~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 6 DDSFKDVR---KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhhhhc---cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 46777742 34799999999999999999999999999873 488999999999999999999999999999876
Q ss_pred C-------CCHhHHHHHHHH
Q psy543 85 I-------PDPNTLEAKIKQ 97 (278)
Q Consensus 85 ~-------~~~~~l~~~i~~ 97 (278)
. .+.+.|..++++
T Consensus 83 ~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 83 LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred CceeecCCCCHHHHHHHHHh
Confidence 4 445555555544
No 43
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.68 E-value=3.4e-16 Score=121.35 Aligned_cols=87 Identities=24% Similarity=0.331 Sum_probs=73.7
Q ss_pred HHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC------
Q psy543 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI------ 85 (278)
Q Consensus 12 f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~------ 85 (278)
|.+.+. .+..++|+||++||++|+.+.|.++++++.++.+.+..+|++++++++.+|+|.++||+++|++|.
T Consensus 15 ~~~~l~--~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMK--NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhC--CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 444453 347799999999999999999999999999888999999999999999999999999999998753
Q ss_pred ----CCHhHHHHHHHHHhc
Q psy543 86 ----PDPNTLEAKIKQYYG 100 (278)
Q Consensus 86 ----~~~~~l~~~i~~~~~ 100 (278)
.+..++.++|..++.
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 456677777766654
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.68 E-value=3.4e-16 Score=118.46 Aligned_cols=81 Identities=32% Similarity=0.643 Sum_probs=71.1
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
+|..+ +.++|++.+.+. +++++|+||++||++|+.+.|.++++++.++ .+.++++|++.+ +++..+++.++||+
T Consensus 1 ~v~~l-~~~~f~~~i~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~ 77 (104)
T cd02995 1 PVKVV-VGKNFDEVVLDS-DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTI 77 (104)
T ss_pred CeEEE-chhhhHHHHhCC-CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEE
Confidence 46777 467999988755 4899999999999999999999999999886 489999999987 57889999999999
Q ss_pred EEEeCCC
Q psy543 79 IFFRNKI 85 (278)
Q Consensus 79 ~~~~~g~ 85 (278)
++|++|+
T Consensus 78 ~~~~~~~ 84 (104)
T cd02995 78 LFFPAGD 84 (104)
T ss_pred EEEcCCC
Confidence 9999873
No 45
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.68 E-value=3.1e-16 Score=132.43 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=69.8
Q ss_pred ceEEecChhHHHHHHhcc-CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 2 SIIVINSDAHFHTEMNNC-GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
.|..| +.++|...+..+ ++++|||+||++||++|+.|.|.|++|+++|+.+.|++||++.. +.+|++.++||+++
T Consensus 83 ~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlli 158 (192)
T cd02988 83 EVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILV 158 (192)
T ss_pred eEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEE
Confidence 36677 567887766543 34699999999999999999999999999999999999999864 57899999999999
Q ss_pred EeCCC
Q psy543 81 FRNKI 85 (278)
Q Consensus 81 ~~~g~ 85 (278)
|++|+
T Consensus 159 yk~G~ 163 (192)
T cd02988 159 YRNGD 163 (192)
T ss_pred EECCE
Confidence 99997
No 46
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.68 E-value=4.2e-16 Score=118.00 Aligned_cols=80 Identities=28% Similarity=0.605 Sum_probs=71.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCC--CHhHHHHcCCCcccE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQ--NQDLAAAQGVSAMPT 77 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~--~~~l~~~~~v~~~Pt 77 (278)
+.++ +.++|++.+++. ++++|+||++||++|+++.|.+.++++.++ .+.++.+|++. ++.++++|+|+++||
T Consensus 2 ~~~l-~~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt 78 (104)
T cd02997 2 VVHL-TDEDFRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78 (104)
T ss_pred eEEe-chHhHHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence 5666 467899988643 699999999999999999999999998875 48899999999 899999999999999
Q ss_pred EEEEeCCC
Q psy543 78 FIFFRNKI 85 (278)
Q Consensus 78 ~~~~~~g~ 85 (278)
+++|++|+
T Consensus 79 ~~~~~~g~ 86 (104)
T cd02997 79 FKYFENGK 86 (104)
T ss_pred EEEEeCCC
Confidence 99999886
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=4.4e-16 Score=118.56 Aligned_cols=74 Identities=26% Similarity=0.477 Sum_probs=64.2
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECCC----CHhHHHHcCCCcccEEEEE
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVDQ----NQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~ 81 (278)
++|.+.+. ++++++|+||++||++|+.+.|.+ .++++.+. ++.++.+|+++ .+.++++|+|.++||+++|
T Consensus 2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 56777774 458999999999999999999988 67888777 79999999987 5789999999999999999
Q ss_pred e--CCC
Q psy543 82 R--NKI 85 (278)
Q Consensus 82 ~--~g~ 85 (278)
+ +|+
T Consensus 80 ~~~~g~ 85 (104)
T cd02953 80 GPGGEP 85 (104)
T ss_pred CCCCCC
Confidence 8 455
No 48
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.66 E-value=6.9e-16 Score=116.81 Aligned_cols=80 Identities=38% Similarity=0.768 Sum_probs=71.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCC-CHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQ-NQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~-~~~l~~~~~v~~~Pt~ 78 (278)
+..+ +.++|++.+.+. +++++|.||++||++|+.+.|.+++++++++ ++.++.+|++. ++.++++|+|.++|++
T Consensus 2 ~~~l-~~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVEL-TDSNFDKVVGDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEc-chhcHHHHhcCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 3456 457898877544 4799999999999999999999999999885 58999999999 9999999999999999
Q ss_pred EEEeCC
Q psy543 79 IFFRNK 84 (278)
Q Consensus 79 ~~~~~g 84 (278)
++|++|
T Consensus 80 ~~~~~~ 85 (105)
T cd02998 80 KFFPKG 85 (105)
T ss_pred EEEeCC
Confidence 999877
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.65 E-value=1.5e-15 Score=114.25 Aligned_cols=73 Identities=27% Similarity=0.711 Sum_probs=66.5
Q ss_pred HHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 12 f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
++..+.+ .+++++++||++||++|+.+.|.+++++++++ ++.++.+|++++++++.+++|.++||+++|++|+
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe
Confidence 4555554 45899999999999999999999999999987 6999999999999999999999999999999887
No 50
>PTZ00062 glutaredoxin; Provisional
Probab=99.65 E-value=1.2e-15 Score=129.62 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=90.8
Q ss_pred ecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 6 i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
..+.+++.+.++... +.+|++|||+||++|+.|.|++.+|+++|+++.|+.||.+ |+|.++|||+||++|+
T Consensus 3 ~~~~ee~~~~i~~~~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 3 FIKKEEKDKLIESNT-GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CCCHHHHHHHHhcCC-CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 357889999886432 6789999999999999999999999999999999999988 9999999999999999
Q ss_pred -------CCHhHHHHHHHHHhcCCCCCCccccccCCccchhhhhcccccccCCC
Q psy543 86 -------PDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKNQCEALNES 132 (278)
Q Consensus 86 -------~~~~~l~~~i~~~~~~~~~~~~~~~~~g~~~L~~~Id~~~~~~LNe~ 132 (278)
.++.+|...+.++.+..... .-..-+...|+...+..+...
T Consensus 74 ~i~r~~G~~~~~~~~~~~~~~~~~~~~------~~~~~v~~li~~~~Vvvf~Kg 121 (204)
T PTZ00062 74 LINSLEGCNTSTLVSFIRGWAQKGSSE------DTVEKIERLIRNHKILLFMKG 121 (204)
T ss_pred EEeeeeCCCHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCEEEEEcc
Confidence 79999999999998754421 011234455666666666554
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=4.7e-15 Score=110.57 Aligned_cols=75 Identities=36% Similarity=0.710 Sum_probs=69.2
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC---CCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+.++|.+.+.+. ++++|.||++||++|+.+.|.++++++.+ ..+.++.+|+++++.++++|+|.++||+++|+++
T Consensus 4 ~~~~~~~~i~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVKDS--KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHhCC--CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 567899988654 59999999999999999999999999988 4799999999999999999999999999999987
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.61 E-value=6.2e-15 Score=138.90 Aligned_cols=82 Identities=21% Similarity=0.429 Sum_probs=70.9
Q ss_pred eEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCH-hHH-HHcCCCcccE
Q psy543 3 IIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQ-DLA-AAQGVSAMPT 77 (278)
Q Consensus 3 v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~-~l~-~~~~v~~~Pt 77 (278)
|.++ |.++|++.+. .+.++++||+|||+||++|+.|.|.|++++++|. ++.|++||++.+. .++ ++|+|.++||
T Consensus 353 Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 353 VVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred eEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 4555 5678999886 5667999999999999999999999999999986 4899999999764 454 7899999999
Q ss_pred EEEEeCCC
Q psy543 78 FIFFRNKI 85 (278)
Q Consensus 78 ~~~~~~g~ 85 (278)
+++|++|.
T Consensus 432 ii~Fk~g~ 439 (463)
T TIGR00424 432 ILFFPKHS 439 (463)
T ss_pred EEEEECCC
Confidence 99999874
No 53
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.61 E-value=7e-15 Score=115.47 Aligned_cols=75 Identities=12% Similarity=0.282 Sum_probs=63.1
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-----------hHHHHcC----C
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-----------DLAAAQG----V 72 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-----------~l~~~~~----v 72 (278)
+.+++.+.+++ ++.++|+||++|||+|+.+.|.|++++++ .++.++.||++.++ ++.++|+ |
T Consensus 12 t~~~~~~~i~~--~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i 88 (122)
T TIGR01295 12 TVVRALEALDK--KETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF 88 (122)
T ss_pred CHHHHHHHHHc--CCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence 67889998864 47899999999999999999999999998 46889999998543 5556665 5
Q ss_pred CcccEEEEEeCCC
Q psy543 73 SAMPTFIFFRNKI 85 (278)
Q Consensus 73 ~~~Pt~~~~~~g~ 85 (278)
.++||+++|++|+
T Consensus 89 ~~~PT~v~~k~Gk 101 (122)
T TIGR01295 89 MGTPTFVHITDGK 101 (122)
T ss_pred CCCCEEEEEeCCe
Confidence 5699999999997
No 54
>KOG0190|consensus
Probab=99.61 E-value=2e-15 Score=141.66 Aligned_cols=98 Identities=29% Similarity=0.590 Sum_probs=86.6
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
|..+ +.++|...|..+ ..++|.||||||++|++++|.+++.+.... .+.+++||++.+.++|.+|+|+++||+
T Consensus 27 Vl~L-t~dnf~~~i~~~--~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 27 VLVL-TKDNFKETINGH--EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTL 103 (493)
T ss_pred eEEE-ecccHHHHhccC--ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeE
Confidence 4455 568999999655 799999999999999999999999988774 699999999999999999999999999
Q ss_pred EEEeCCC--------CCHhHHHHHHHHHhcCCC
Q psy543 79 IFFRNKI--------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 79 ~~~~~g~--------~~~~~l~~~i~~~~~~~~ 103 (278)
.+|++|. ++.+.+..++++..+...
T Consensus 104 kiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred EEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 9999998 678888888888876655
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=9.7e-15 Score=137.53 Aligned_cols=82 Identities=21% Similarity=0.445 Sum_probs=71.8
Q ss_pred eEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC-CCHhHHH-HcCCCcccE
Q psy543 3 IIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD-QNQDLAA-AQGVSAMPT 77 (278)
Q Consensus 3 v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d-~~~~l~~-~~~v~~~Pt 77 (278)
|+.+ +.++|++++. ...++++||+|||+||++|+.|.|.|++++++|. ++.|+++|++ .+..++. +|+|.++||
T Consensus 347 Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PT 425 (457)
T PLN02309 347 VVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 425 (457)
T ss_pred cEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeE
Confidence 4555 5689998875 4567999999999999999999999999999986 5999999999 7788886 699999999
Q ss_pred EEEEeCCC
Q psy543 78 FIFFRNKI 85 (278)
Q Consensus 78 ~~~~~~g~ 85 (278)
+++|++|.
T Consensus 426 il~f~~g~ 433 (457)
T PLN02309 426 ILLFPKNS 433 (457)
T ss_pred EEEEeCCC
Confidence 99998774
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.58 E-value=1.7e-14 Score=105.50 Aligned_cols=73 Identities=52% Similarity=1.009 Sum_probs=67.6
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
+|++.+... ++++|.||++||++|+.+.+.+++++++.+++.++.+|++..+.+++.|++.++||+++|++|+
T Consensus 2 ~~~~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 567777654 8999999999999999999999999999779999999999999999999999999999999886
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.57 E-value=2.8e-14 Score=112.26 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=72.6
Q ss_pred hhHHHHHHhccCC-CeEEEEEEcCCChhhHHHHHHHH---HHHHHCC-CcEEEEEECCCC-------------HhHHHHc
Q psy543 9 DAHFHTEMNNCGT-KLVVVDFTASWCGPCQRIAPVFE---QLSRKYP-NAAFFKVDVDQN-------------QDLAAAQ 70 (278)
Q Consensus 9 ~~~f~~~l~~~~~-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~-~v~~~~vd~d~~-------------~~l~~~~ 70 (278)
.+++++.++ .+ ++++|+||++||++|+.+.|.+. .+.+.+. ++.++.+|++.. ..++.+|
T Consensus 3 ~~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 355666663 45 89999999999999999999874 5655554 688999999864 6899999
Q ss_pred CCCcccEEEEEeCC--C--------CCHhHHHHHHHHHhcC
Q psy543 71 GVSAMPTFIFFRNK--I--------PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 71 ~v~~~Pt~~~~~~g--~--------~~~~~l~~~i~~~~~~ 101 (278)
+|.++||++++.++ + .+.+.+.+.|+.+++.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999999875 4 5677888888877643
No 58
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.54 E-value=5.4e-14 Score=108.79 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=65.6
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEc--CCCh---hhHHHHHHHHHHHHHCCCcEEEEEEC-----CCCHhHHHHcCC
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTA--SWCG---PCQRIAPVFEQLSRKYPNAAFFKVDV-----DQNQDLAAAQGV 72 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a--~wC~---~C~~~~p~l~~l~~~~~~v~~~~vd~-----d~~~~l~~~~~v 72 (278)
+..| +.++|++.|.++ +.+||.||| |||+ +|+++.|.+.+.+. .+.+++||| .++.+||++|+|
T Consensus 3 ~v~L-~~~nF~~~v~~~--~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDL-DTVTFYKVIPKF--KYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeEC-ChhhHHHHHhcC--CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCC
Confidence 4555 678999999654 889999999 9999 89988888877664 499999999 457889999999
Q ss_pred C--cccEEEEEeCC
Q psy543 73 S--AMPTFIFFRNK 84 (278)
Q Consensus 73 ~--~~Pt~~~~~~g 84 (278)
+ ++||+++|++|
T Consensus 77 ~~~gyPTl~lF~~g 90 (116)
T cd03007 77 DKESYPVIYLFHGG 90 (116)
T ss_pred CcCCCCEEEEEeCC
Confidence 9 99999999987
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.53 E-value=7.8e-14 Score=133.24 Aligned_cols=97 Identities=28% Similarity=0.569 Sum_probs=84.8
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEEE
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (278)
..+ +.++|++.+++ ++.++|.|||+||++|+++.|.+.++++.+. ++.++.|||+.+..+|++|+|.++||++
T Consensus 35 ~~l-~~~~f~~~i~~--~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 35 TVL-TDSTFDKFITE--NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred EEc-chhhHHHHHhc--CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 444 56789998854 4799999999999999999999999887653 6999999999999999999999999999
Q ss_pred EEeCCC-------CCHhHHHHHHHHHhcCCC
Q psy543 80 FFRNKI-------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 80 ~~~~g~-------~~~~~l~~~i~~~~~~~~ 103 (278)
+|++|+ .+.+.|.+++.++++...
T Consensus 112 ~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 112 FFNKGNPVNYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred EEECCceEEecCCCCHHHHHHHHHHhhCCCc
Confidence 999887 788999999999876543
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=7.9e-14 Score=132.20 Aligned_cols=97 Identities=31% Similarity=0.618 Sum_probs=84.4
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
+..+ +.++|+.++++ +++++|.|||+||++|+++.|.+.++++.+. ++.|+.|||+.++.+|++|+|.++||+
T Consensus 3 v~~l-~~~~~~~~i~~--~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKS--HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL 79 (462)
T ss_pred ceEC-CHHHHHHHHhc--CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence 3455 67899999864 4799999999999999999999999888764 499999999999999999999999999
Q ss_pred EEEeCCC---------CCHhHHHHHHHHHhcCC
Q psy543 79 IFFRNKI---------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 79 ~~~~~g~---------~~~~~l~~~i~~~~~~~ 102 (278)
++|++|+ .+.+.|.+++.+.++..
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 9999876 57888899998887643
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.52 E-value=6.5e-14 Score=133.81 Aligned_cols=97 Identities=22% Similarity=0.416 Sum_probs=83.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHHHHcCCCcccEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (278)
+..+ +.++|++.+.+ .+++++|+|||+||++|+.+.|.++++++.++ .+.++++|++.+...+++|+++++||++
T Consensus 359 v~~l-~~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 359 VKVV-VGNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred eEEe-cccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 4445 46789888754 45899999999999999999999999998876 4889999999999999999999999999
Q ss_pred EEeCCC---------CCHhHHHHHHHHHhcC
Q psy543 80 FFRNKI---------PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 80 ~~~~g~---------~~~~~l~~~i~~~~~~ 101 (278)
+|++|+ .+.+.+.++|++++..
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999776 6777788888887754
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.50 E-value=1.4e-13 Score=99.70 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=63.6
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC------CCHhHHHHHHH
Q psy543 24 VVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI------PDPNTLEAKIK 96 (278)
Q Consensus 24 vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~------~~~~~l~~~i~ 96 (278)
.|..||++||++|+.+.|.+++++++++ .+.++.||+++.++++++|++.++||+++ +|+ .+.+++.++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~~~~G~~~~~~l~~~l~ 79 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDVEFIGAPTKEELVEAIK 79 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEEEEecCCCHHHHHHHHH
Confidence 4678999999999999999999999886 68999999999999999999999999986 554 56777777776
Q ss_pred HH
Q psy543 97 QY 98 (278)
Q Consensus 97 ~~ 98 (278)
+.
T Consensus 80 ~~ 81 (82)
T TIGR00411 80 KR 81 (82)
T ss_pred hh
Confidence 54
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.48 E-value=2.2e-13 Score=103.02 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCC--cccEEEEEeC--CC--------CC
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVS--AMPTFIFFRN--KI--------PD 87 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~--g~--------~~ 87 (278)
++++++.||++||++|+.+.|.+++++++|. .+.|++||+++++.+++.|++. ++|+++++++ |+ .+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 5899999999999999999999999999997 6999999999999999999999 9999999998 54 25
Q ss_pred HhHHHHHHHHH
Q psy543 88 PNTLEAKIKQY 98 (278)
Q Consensus 88 ~~~l~~~i~~~ 98 (278)
.+.|.++++++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 66777776654
No 64
>KOG0190|consensus
Probab=99.48 E-value=8.2e-14 Score=130.90 Aligned_cols=79 Identities=33% Similarity=0.664 Sum_probs=66.8
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHHHHcCCCcccEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (278)
|+.+ -.++|+.++.+ .+|-|||.||||||+||+++.|.|++|++.|. ++.++++|++.|.- ....+.++||++
T Consensus 368 Vkvv-Vgknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 368 VKVV-VGKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTIL 443 (493)
T ss_pred eEEE-eecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEE
Confidence 5555 35788888765 45999999999999999999999999999996 69999999999863 335677899999
Q ss_pred EEeCCC
Q psy543 80 FFRNKI 85 (278)
Q Consensus 80 ~~~~g~ 85 (278)
+|+.|.
T Consensus 444 ~~pag~ 449 (493)
T KOG0190|consen 444 FFPAGH 449 (493)
T ss_pred EecCCC
Confidence 999874
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.46 E-value=1.4e-13 Score=107.35 Aligned_cols=67 Identities=16% Similarity=0.442 Sum_probs=54.5
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCH-hHHHHcCCCc--ccEEEEEe-CCC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQ-DLAAAQGVSA--MPTFIFFR-NKI 85 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~-~l~~~~~v~~--~Pt~~~~~-~g~ 85 (278)
.++++++|+|||+||++|+.+.|.+.+....+. ...|+.|+++..+ ...++|++.+ +||++|+. +|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 456999999999999999999999988766543 4567777877664 4567899986 99999996 664
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.44 E-value=9.8e-13 Score=113.22 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=68.9
Q ss_pred cCCCeEEEEEEc---CCChhhHHHHHHHHHHHHHCCCcE--EEEEECCCCHhHHHHcCCCcccEEEEEeCCC--------
Q psy543 19 CGTKLVVVDFTA---SWCGPCQRIAPVFEQLSRKYPNAA--FFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI-------- 85 (278)
Q Consensus 19 ~~~k~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~v~--~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~-------- 85 (278)
..+...++.|++ +||++|+.+.|.+++++++++++. ++.+|.+++++++++|+|.++||+++|++|+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 344566777888 999999999999999999998654 5666666999999999999999999999976
Q ss_pred -CCHhHHHHHHHHHhcC
Q psy543 86 -PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 86 -~~~~~l~~~i~~~~~~ 101 (278)
.+.+++.++|+.+++.
T Consensus 97 ~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRV 113 (215)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 5567788888877654
No 67
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.43 E-value=1e-12 Score=128.08 Aligned_cols=95 Identities=23% Similarity=0.435 Sum_probs=77.4
Q ss_pred eEEecChhHHHHHHhc--cCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCCCcEEEEEECCCC----HhHHHHcCCC
Q psy543 3 IIVINSDAHFHTEMNN--CGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYPNAAFFKVDVDQN----QDLAAAQGVS 73 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~--~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~v~~~~vd~d~~----~~l~~~~~v~ 73 (278)
.+.+.+.+++++.++. .++|+|+|+|||+||++|+.+.+.+ .++.++++++.++++|++++ .+++++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 4567788999998864 4579999999999999999999875 67888888899999999864 6789999999
Q ss_pred cccEEEEEe-CCC----------CCHhHHHHHHHH
Q psy543 74 AMPTFIFFR-NKI----------PDPNTLEAKIKQ 97 (278)
Q Consensus 74 ~~Pt~~~~~-~g~----------~~~~~l~~~i~~ 97 (278)
++||+++|+ +|+ .+.+++.+.+++
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 999999997 554 344555555554
No 68
>KOG4277|consensus
Probab=99.43 E-value=1.8e-13 Score=119.48 Aligned_cols=86 Identities=20% Similarity=0.473 Sum_probs=73.6
Q ss_pred HhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC------
Q psy543 16 MNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI------ 85 (278)
Q Consensus 16 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~------ 85 (278)
.....+..++|+||||||++|+++.|.|.++.-.++ -+++.++|++..+.++.+|+|+++||+.+++++.
T Consensus 38 kdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG 117 (468)
T KOG4277|consen 38 KDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRG 117 (468)
T ss_pred hhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCC
Confidence 334556899999999999999999999999988776 4889999999999999999999999999999887
Q ss_pred -CCHhHHHHHHHHHhcC
Q psy543 86 -PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 86 -~~~~~l~~~i~~~~~~ 101 (278)
+..+.+..+-.+..+.
T Consensus 118 ~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAA 134 (468)
T ss_pred CccHHHHHHHHHhcccc
Confidence 5667777766665543
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.42 E-value=1.5e-12 Score=112.13 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=69.1
Q ss_pred HHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-----CCH
Q psy543 14 TEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI-----PDP 88 (278)
Q Consensus 14 ~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~-----~~~ 88 (278)
+.++...+..+++.||++||++|+.+.|.+++++.+++++.+..+|.+..++++.+|+|.++||++++++|. .+.
T Consensus 126 ~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~ 205 (215)
T TIGR02187 126 ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEEFVGAYPE 205 (215)
T ss_pred HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEEEECCCCH
Confidence 334444434556669999999999999999999999889999999999999999999999999999998874 455
Q ss_pred hHHHHHHHH
Q psy543 89 NTLEAKIKQ 97 (278)
Q Consensus 89 ~~l~~~i~~ 97 (278)
+++.++|.+
T Consensus 206 ~~l~~~l~~ 214 (215)
T TIGR02187 206 EQFLEYILS 214 (215)
T ss_pred HHHHHHHHh
Confidence 566665543
No 70
>KOG0912|consensus
Probab=99.39 E-value=8.5e-13 Score=115.42 Aligned_cols=91 Identities=29% Similarity=0.525 Sum_probs=78.6
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC----C--CcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----P--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
.++++.++.. ..+|+|.|||+||+.++.+.|.+++.++.+ | ++.+.+|||+++.+++.+|.|..+||+.+|+
T Consensus 3 ~~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 3 SENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred cccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 3567777865 489999999999999999999998877654 5 5999999999999999999999999999999
Q ss_pred CCC---------CCHhHHHHHHHHHhcC
Q psy543 83 NKI---------PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 83 ~g~---------~~~~~l~~~i~~~~~~ 101 (278)
+|. ++.+.|.++|++.++.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 998 6677777788777643
No 71
>PHA02125 thioredoxin-like protein
Probab=99.39 E-value=2e-12 Score=92.71 Aligned_cols=50 Identities=26% Similarity=0.722 Sum_probs=46.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (278)
+++||++||++|+.+.|.|+++. ..++.||.+++++++++|+|.++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 68999999999999999998763 568999999999999999999999998
No 72
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.39 E-value=4.1e-12 Score=112.94 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred HHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC-----------CHhHHHHcCCCcccEEEEEe
Q psy543 14 TEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-----------NQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 14 ~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~~ 82 (278)
..++...++++||+||++||++|+.+.|.|++++++| ++.++.|++|. +..++++|+|.++||+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 4555666799999999999999999999999999999 47777777765 35789999999999999998
Q ss_pred C-CC---------CCHhHHHHHHHHHhc
Q psy543 83 N-KI---------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 83 ~-g~---------~~~~~l~~~i~~~~~ 100 (278)
+ |+ .+.++|.+.+.....
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 6 44 667788887776654
No 73
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.36 E-value=3.1e-12 Score=103.26 Aligned_cols=69 Identities=22% Similarity=0.377 Sum_probs=56.3
Q ss_pred hccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---------CcEEEEEECCCC------------------------
Q psy543 17 NNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---------NAAFFKVDVDQN------------------------ 63 (278)
Q Consensus 17 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---------~v~~~~vd~d~~------------------------ 63 (278)
+..++++++|+|||+||++|++..|.|.++++++. ++.++.|+.+..
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~ 100 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF 100 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence 34467999999999999999999999999876442 588888887643
Q ss_pred -HhHHHHcCCCcccEEEEEe-CCC
Q psy543 64 -QDLAAAQGVSAMPTFIFFR-NKI 85 (278)
Q Consensus 64 -~~l~~~~~v~~~Pt~~~~~-~g~ 85 (278)
..++++|++.++||.+++. +|+
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCc
Confidence 1477889999999999997 565
No 74
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.36 E-value=2.5e-12 Score=89.88 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=53.5
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 24 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
-++.||++||++|+.+.+.++++++.++++.+..+|++++++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999999988889999999999999999999999999875
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.36 E-value=3.5e-12 Score=120.98 Aligned_cols=90 Identities=28% Similarity=0.500 Sum_probs=73.8
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCHhHHHHcCCCcccEEEEEeC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 83 (278)
+.++|++.+.+ .++++||+|||+||++|+.+.|.++++++.+. ++.|+.+|++.+.. .. +++.++||+++|++
T Consensus 352 ~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~Pt~~~~~~ 428 (462)
T TIGR01130 352 VGKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGFPTIKFVPA 428 (462)
T ss_pred eCcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCccccCEEEEEeC
Confidence 45788888754 45999999999999999999999999999886 48899999998753 34 99999999999998
Q ss_pred CC----------CCHhHHHHHHHHHhc
Q psy543 84 KI----------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 84 g~----------~~~~~l~~~i~~~~~ 100 (278)
|. .+.+.+.++|.+...
T Consensus 429 ~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 429 GKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred CCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 74 455666666665553
No 76
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.34 E-value=4.9e-12 Score=90.98 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=47.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
|.||++||++|+.+.|.+++++++++ .+.++++| +.+.+.+|++.++||+++ +|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~ 58 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE 58 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE
Confidence 78999999999999999999999997 57777776 344578899999999999 665
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.34 E-value=8.6e-12 Score=101.61 Aligned_cols=77 Identities=17% Similarity=0.351 Sum_probs=59.1
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC------------HhHH-HHc---CCCcccEEEEEeC-
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN------------QDLA-AAQ---GVSAMPTFIFFRN- 83 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~------------~~l~-~~~---~v~~~Pt~~~~~~- 83 (278)
++..+|+|||+||++|+++.|.+++++++| ++.++.|+.+.. .... ..| ++.++||.++++.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 367799999999999999999999999998 566777776643 2333 445 8899999999964
Q ss_pred CC---------CCHhHHHHHHHHH
Q psy543 84 KI---------PDPNTLEAKIKQY 98 (278)
Q Consensus 84 g~---------~~~~~l~~~i~~~ 98 (278)
|+ .+.+++++.|+++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 33 5667777777654
No 78
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.33 E-value=9.5e-12 Score=92.76 Aligned_cols=63 Identities=32% Similarity=0.724 Sum_probs=53.9
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCC-------------------------HhHHHHcCC
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQN-------------------------QDLAAAQGV 72 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~-------------------------~~l~~~~~v 72 (278)
||+++|+|||+||++|+...|.+.++.++|+ ++.++.|+.++. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 799999998764 257788999
Q ss_pred CcccEEEEEeC
Q psy543 73 SAMPTFIFFRN 83 (278)
Q Consensus 73 ~~~Pt~~~~~~ 83 (278)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999999875
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.31 E-value=1e-11 Score=98.30 Aligned_cols=67 Identities=25% Similarity=0.495 Sum_probs=56.1
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCC------------------------HhHHHHc
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQN------------------------QDLAAAQ 70 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~------------------------~~l~~~~ 70 (278)
.+++++||+||++||++|+.+.|.+.++++++. ++.++.|+++.. ..++++|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 456899999999999999999999999887763 567777777644 3577899
Q ss_pred CCCcccEEEEEe-CCC
Q psy543 71 GVSAMPTFIFFR-NKI 85 (278)
Q Consensus 71 ~v~~~Pt~~~~~-~g~ 85 (278)
+|.++|++++++ +|+
T Consensus 96 ~v~~~P~~~lid~~G~ 111 (131)
T cd03009 96 KIEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCCEEEEECCCCC
Confidence 999999999997 665
No 80
>KOG0911|consensus
Probab=99.30 E-value=9.8e-13 Score=110.83 Aligned_cols=180 Identities=22% Similarity=0.322 Sum_probs=122.3
Q ss_pred CceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 1 M~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
|++..+...++| ..+ +++.++++||++||.+|++|..++..+++..+++.+++++.+..++++..+.+.++|++++
T Consensus 1 ~~v~~i~~~~~f--~~~--~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 1 MTVQFIVFQEQF--LDQ--KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred CCceeehhHHHH--HHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 889999999999 443 5699999999999999999999999999988899999999999999999999999999999
Q ss_pred EeCCC-------CCHhHHHHHHHHHhcCCCCCCccccccCCccchhhhhcc---cccccCCCCCcccccccccCcceEEc
Q psy543 81 FRNKI-------PDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKN---QCEALNESDQHPFTNCLNTAETYLES 150 (278)
Q Consensus 81 ~~~g~-------~~~~~l~~~i~~~~~~~~~~~~~~~~~g~~~L~~~Id~~---~~~~LNe~~~~~~~~~l~~~~~~l~S 150 (278)
+..|. .++..+...+..+.+......+ ......+.+.-... .-+++.........-+|.++.+ .+.
T Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p-~~P 152 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPPFLVSKVEKLAESGSASLG---MGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTP-EEP 152 (227)
T ss_pred eecchhhhhhhccCcHHHHHHHHHhhhhcccccC---CCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCC-Ccc
Confidence 98877 5555666666655544431100 00000111000000 0011111111112223333211 122
Q ss_pred cC--CcceEEEeeecCceeEEEEEEecCCC--CCCceEEEEEcCCC
Q psy543 151 DA--DEQLILSFTFNQSVKIHSLKIKAPKD--KGPKTLKLFINQPK 192 (278)
Q Consensus 151 d~--D~qLii~ipF~~~vk~~si~i~~~~~--~~P~~ik~f~N~~~ 192 (278)
.| +.|++ .|.-..+|.+.++.|..+++ ++ +|.|+|||+
T Consensus 153 ~CGFS~~~v-~iL~~~nV~~~~fdIL~DeelRqg---lK~fSdWPT 194 (227)
T KOG0911|consen 153 KCGFSRQLV-GILQSHNVNYTIFDVLTDEELRQG---LKEFSDWPT 194 (227)
T ss_pred cccccHHHH-HHHHHcCCCeeEEeccCCHHHHHH---hhhhcCCCC
Confidence 33 34554 77788999999999998887 77 899999996
No 81
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.29 E-value=1.3e-11 Score=97.93 Aligned_cols=68 Identities=26% Similarity=0.474 Sum_probs=55.9
Q ss_pred ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCCH-------------------------hHHH
Q psy543 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQNQ-------------------------DLAA 68 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-------------------------~l~~ 68 (278)
..+|+++||+||++||++|+.+.|.++++++++. ++.++.|+++..+ .+++
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 3457999999999999999999999999988765 4677778776532 4567
Q ss_pred HcCCCcccEEEEEe-CCC
Q psy543 69 AQGVSAMPTFIFFR-NKI 85 (278)
Q Consensus 69 ~~~v~~~Pt~~~~~-~g~ 85 (278)
.|+|.++||+++++ +|+
T Consensus 94 ~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HcCCCCCCEEEEECCCCC
Confidence 79999999999997 565
No 82
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.28 E-value=3.1e-11 Score=101.48 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=64.5
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-----------------------hHHHHcCCCccc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-----------------------DLAAAQGVSAMP 76 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-----------------------~l~~~~~v~~~P 76 (278)
.+++++|+||++||++|+++.|.+.+++++ ++.++.|+.++.+ .++..|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 569999999999999999999999999764 6888888865432 245578999999
Q ss_pred EEEEEe-CCC--------CCHhHHHHHHHHHhcCC
Q psy543 77 TFIFFR-NKI--------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 77 t~~~~~-~g~--------~~~~~l~~~i~~~~~~~ 102 (278)
+.+++. +|+ .+.+.+++.|+.++...
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 776664 777 67788888888877543
No 83
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.27 E-value=2.4e-11 Score=90.07 Aligned_cols=69 Identities=14% Similarity=0.285 Sum_probs=61.1
Q ss_pred HHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 15 ~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
.++.-.+..-+..|+++||++|....+.++++++.++++.+..+|.++.++++++|+|.++||+++ +|+
T Consensus 6 ~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~ 74 (89)
T cd03026 6 QIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE 74 (89)
T ss_pred HHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE
Confidence 344445567888999999999999999999999999999999999999999999999999999975 554
No 84
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.25 E-value=3.1e-11 Score=115.39 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=64.5
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEE----------------------------CCCCHhHHHH
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVD----------------------------VDQNQDLAAA 69 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd----------------------------~d~~~~l~~~ 69 (278)
++++|||+|||+||++|+.+.|.|++++++++ ++.++.|. +|.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 67999999999999999999999999999886 56665553 3455678999
Q ss_pred cCCCcccEEEEE-eCCC--------CCHhHHHHHHH
Q psy543 70 QGVSAMPTFIFF-RNKI--------PDPNTLEAKIK 96 (278)
Q Consensus 70 ~~v~~~Pt~~~~-~~g~--------~~~~~l~~~i~ 96 (278)
|+|.++||++++ ++|+ .+.++|+++|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 999999999666 5677 77888888887
No 85
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.25 E-value=7.2e-11 Score=92.81 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=58.7
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECCCCHhHHHH--------cCCCccc
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKY-PNAAFFKVDVDQNQDLAAA--------QGVSAMP 76 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~~~~l~~~--------~~v~~~P 76 (278)
.+.++... .++|+|+|+|+|+||++|+.|.+.. .++++.. .+..++++|.++.+++++. |++.++|
T Consensus 5 ~eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 5 EEAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 34555544 4569999999999999999998743 3566654 4799999999998887653 5899999
Q ss_pred EEEEEeC-CC
Q psy543 77 TFIFFRN-KI 85 (278)
Q Consensus 77 t~~~~~~-g~ 85 (278)
|++|+.. |+
T Consensus 83 t~vfl~~~G~ 92 (124)
T cd02955 83 LNVFLTPDLK 92 (124)
T ss_pred EEEEECCCCC
Confidence 9999974 44
No 86
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.23 E-value=6.3e-11 Score=98.53 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=63.0
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC-----------------------CCHhHHHHcCCCccc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD-----------------------QNQDLAAAQGVSAMP 76 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~v~~~P 76 (278)
++++++|+||++||++|+.+.|.+++++++ ++.++.|+.+ ....+++.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 468999999999999999999999999874 4666666643 233567789999999
Q ss_pred EEEEE-eCCC--------CCHhHHHHHHHHHhc
Q psy543 77 TFIFF-RNKI--------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 77 t~~~~-~~g~--------~~~~~l~~~i~~~~~ 100 (278)
+.+++ ++|+ .+.+++.+.++++++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 76666 5777 677888888888774
No 87
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.22 E-value=5.3e-11 Score=93.58 Aligned_cols=66 Identities=24% Similarity=0.527 Sum_probs=53.6
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEEC-----------------------CCCHhHHHHcCCCcc
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV-----------------------DQNQDLAAAQGVSAM 75 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~v~~~ 75 (278)
..+++++|+||++||++|+++.|.++++++++ ++.++.|+. |....+++.|++.++
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 34689999999999999999999999999887 477776663 345567888999999
Q ss_pred cEEEEEe-CCC
Q psy543 76 PTFIFFR-NKI 85 (278)
Q Consensus 76 Pt~~~~~-~g~ 85 (278)
|+.+++. +|+
T Consensus 102 P~~~~ld~~G~ 112 (127)
T cd03010 102 PETFLIDGDGI 112 (127)
T ss_pred CeEEEECCCce
Confidence 9766664 664
No 88
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.18 E-value=4e-11 Score=92.05 Aligned_cols=78 Identities=26% Similarity=0.504 Sum_probs=55.8
Q ss_pred ccCCCeEEEEEEcCCChhhHHHHHHHHH---HHHHCC-CcEEEEEECCCC--------------------HhHHHHcCCC
Q psy543 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQ---LSRKYP-NAAFFKVDVDQN--------------------QDLAAAQGVS 73 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~-~v~~~~vd~d~~--------------------~~l~~~~~v~ 73 (278)
+.++++++++||++||++|+.+.+.+.+ +...+. ++.++.++++.. .+++++|+|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 3467999999999999999999999875 444443 588888888753 3588999999
Q ss_pred cccEEEEEe-CCC--------CCHhHHHHHH
Q psy543 74 AMPTFIFFR-NKI--------PDPNTLEAKI 95 (278)
Q Consensus 74 ~~Pt~~~~~-~g~--------~~~~~l~~~i 95 (278)
++||++++. +|+ .++++|.++|
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999996 565 5566665543
No 89
>KOG0191|consensus
Probab=99.15 E-value=1.1e-10 Score=108.97 Aligned_cols=84 Identities=25% Similarity=0.536 Sum_probs=74.7
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC--------CCHhH
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--------PDPNT 90 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--------~~~~~ 90 (278)
.+++++|+||++||++|+.+.|.+.+++..+.+ +.+..|||+.+.++|.+|+|.++||+.+|.+|. .+.+.
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~ 125 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAES 125 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHH
Confidence 348999999999999999999999999999885 999999999999999999999999999999883 56677
Q ss_pred HHHHHHHHhcCCC
Q psy543 91 LEAKIKQYYGVGE 103 (278)
Q Consensus 91 l~~~i~~~~~~~~ 103 (278)
+..++...+....
T Consensus 126 ~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 126 LAEFLIKELEPSV 138 (383)
T ss_pred HHHHHHHhhcccc
Confidence 7777777766554
No 90
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.13 E-value=5.2e-10 Score=92.41 Aligned_cols=78 Identities=27% Similarity=0.562 Sum_probs=64.3
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC----------------------CHhHHHHcCCCcc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ----------------------NQDLAAAQGVSAM 75 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------~~~l~~~~~v~~~ 75 (278)
.+++++|+||++||++|+...+.+.+++++++ ++.++.|+++. ...+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 56899999999999999999999999999986 48888888753 3567899999999
Q ss_pred cEEEEEe-CCC--------CCHhHHHHHHHH
Q psy543 76 PTFIFFR-NKI--------PDPNTLEAKIKQ 97 (278)
Q Consensus 76 Pt~~~~~-~g~--------~~~~~l~~~i~~ 97 (278)
|+++++. +|+ .+.+++.+.+++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 9988886 555 556666666654
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.12 E-value=3.2e-10 Score=88.42 Aligned_cols=65 Identities=29% Similarity=0.504 Sum_probs=51.6
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEE---------------------CCCCHhHHHHcCCCcccEE
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD---------------------VDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd---------------------~d~~~~l~~~~~v~~~Pt~ 78 (278)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .+.+..++++|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 45899999999999999999999999988753 2222222 1344579999999999999
Q ss_pred EEEeCCC
Q psy543 79 IFFRNKI 85 (278)
Q Consensus 79 ~~~~~g~ 85 (278)
+++.+++
T Consensus 98 ~vid~~g 104 (123)
T cd03011 98 VIVDPGG 104 (123)
T ss_pred EEEcCCC
Confidence 9998765
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.11 E-value=3.9e-10 Score=85.43 Aligned_cols=65 Identities=37% Similarity=0.719 Sum_probs=58.6
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHC--CCcEEEEEECCCC-----------------------HhHHHHcCCCc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVDQN-----------------------QDLAAAQGVSA 74 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~~-----------------------~~l~~~~~v~~ 74 (278)
.+++++|.||++||++|+...+.+.++.+++ +++.++.|+++.. ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3689999999999999999999999999999 5899999999986 67889999999
Q ss_pred ccEEEEEe-CC
Q psy543 75 MPTFIFFR-NK 84 (278)
Q Consensus 75 ~Pt~~~~~-~g 84 (278)
+|+++++. +|
T Consensus 98 ~P~~~l~d~~g 108 (116)
T cd02966 98 LPTTFLIDRDG 108 (116)
T ss_pred cceEEEECCCC
Confidence 99998886 44
No 93
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.11 E-value=3.3e-10 Score=107.86 Aligned_cols=94 Identities=22% Similarity=0.443 Sum_probs=76.2
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCCCcEEEEEECCCC----HhHHHHcCCCccc
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYPNAAFFKVDVDQN----QDLAAAQGVSAMP 76 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~P 76 (278)
+.+++.+++++.++++++|+|+|+|||+||-.||.+.+.. .+.+.+.+++.+.++|++++ .++.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 3466667999999988878999999999999999999976 45666677999999999886 3577999999999
Q ss_pred EEEEEe-CCC--------CCHhHHHHHHHH
Q psy543 77 TFIFFR-NKI--------PDPNTLEAKIKQ 97 (278)
Q Consensus 77 t~~~~~-~g~--------~~~~~l~~~i~~ 97 (278)
++++|. +|+ .+.+.+.+.+++
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~ 566 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLER 566 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHH
Confidence 999998 443 455555555544
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=3.1e-10 Score=117.76 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=66.5
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEEC---------------------------CCCHhHHHHc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDV---------------------------DQNQDLAAAQ 70 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~---------------------------d~~~~l~~~~ 70 (278)
++|++||+|||+||++|+.+.|.|++++++|+ ++.++.|.. |....++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 57999999999999999999999999999997 367776642 2234677899
Q ss_pred CCCcccEEEEE-eCCC--------CCHhHHHHHHHHHhc
Q psy543 71 GVSAMPTFIFF-RNKI--------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 71 ~v~~~Pt~~~~-~~g~--------~~~~~l~~~i~~~~~ 100 (278)
+|.++|+++++ ++|+ ...+.|.++|+..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 4777 567788888887654
No 95
>KOG1731|consensus
Probab=99.10 E-value=4.8e-11 Score=112.50 Aligned_cols=97 Identities=25% Similarity=0.470 Sum_probs=77.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCC--CHhHHHHcCCCccc
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQ--NQDLAAAQGVSAMP 76 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~--~~~l~~~~~v~~~P 76 (278)
+.++ +.+.|...+..+. +-.+|.||++|||+|++++|.++++++... =+.++.|||.. |..+|+.|+|+.+|
T Consensus 41 ii~L-d~~tf~~~v~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 41 IIEL-DVDTFNAAVFGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred eEEe-ehhhhHHHhcccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 4555 6788999887654 688999999999999999999999998764 38899999964 67899999999999
Q ss_pred EEEEEeCC-------C-----CCHhHHHHHHHHHhcC
Q psy543 77 TFIFFRNK-------I-----PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 77 t~~~~~~g-------~-----~~~~~l~~~i~~~~~~ 101 (278)
|+.+|..+ . ..+.+++..+.+.+..
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 99999755 2 2345566555555433
No 96
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.08 E-value=1.2e-09 Score=91.00 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=62.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-------------HhHHHHcCC--CcccEEEEEe-CCC---
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-------------QDLAAAQGV--SAMPTFIFFR-NKI--- 85 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-------------~~l~~~~~v--~~~Pt~~~~~-~g~--- 85 (278)
||+||++||++|++..|.+++++++| ++.++.|+++.. ..+.+.|++ .++||.+++. +|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999999 577777777643 236678995 6999988884 565
Q ss_pred ------CCHhHHHHHHHHHhcC
Q psy543 86 ------PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 86 ------~~~~~l~~~i~~~~~~ 101 (278)
.+.++|++.|.+++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 6788888888888754
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.05 E-value=1e-09 Score=86.31 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=52.8
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC---------------------------CCHhHHHHc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD---------------------------QNQDLAAAQ 70 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d---------------------------~~~~l~~~~ 70 (278)
+++++||+||++||++|+...|.|++++++|. ++.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 56899999999999999999999999999997 5788777542 113466778
Q ss_pred CCCcccEEEEEe-CC
Q psy543 71 GVSAMPTFIFFR-NK 84 (278)
Q Consensus 71 ~v~~~Pt~~~~~-~g 84 (278)
++.++|+++++. +|
T Consensus 102 ~v~~~P~~~vid~~G 116 (126)
T cd03012 102 GNQYWPALYLIDPTG 116 (126)
T ss_pred CCCcCCeEEEECCCC
Confidence 888888888885 44
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.04 E-value=3.7e-10 Score=86.87 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=45.4
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEE---CCCCHhHHHHcCCCcccEEE
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVD---VDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd---~d~~~~l~~~~~v~~~Pt~~ 79 (278)
+++++|+||++||++|+.+.|.++++++++. ++.++.+. .++...+++++++..+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 6899999999999999999999999998875 56666552 22234466677777777653
No 99
>KOG1672|consensus
Probab=99.00 E-value=1.9e-09 Score=88.91 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=77.8
Q ss_pred CceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 1 M~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
|.+.+|.|..+|-+..+++ .-||++||-+.-..|+.|...|+.|+++|.+.+|++||+...|-++.+++|..+|++.+
T Consensus 66 G~y~ev~~Ekdf~~~~~kS--~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKS--EKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHhhcC--ceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 4578899999998888655 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC
Q psy543 81 FRNKI 85 (278)
Q Consensus 81 ~~~g~ 85 (278)
|++|+
T Consensus 144 ~k~g~ 148 (211)
T KOG1672|consen 144 FKNGK 148 (211)
T ss_pred EEcCE
Confidence 99998
No 100
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.99 E-value=1.9e-09 Score=95.29 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=67.8
Q ss_pred eEEecChhHHHHHHhcc-CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNC-GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
|.+|.+.++|-+.+.+. ++..|||+||-+.++.|..|...|..||.+|+.++|++|..+..+ +..+|.+..+||+++|
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvY 205 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVY 205 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEEE
Confidence 67788888888888643 356899999999999999999999999999999999999998887 7789999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|.
T Consensus 206 k~G~ 209 (265)
T PF02114_consen 206 KNGD 209 (265)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 9997
No 101
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.96 E-value=4.9e-09 Score=84.27 Aligned_cols=67 Identities=36% Similarity=0.640 Sum_probs=55.8
Q ss_pred cCCCeEEEEEEcC-CChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------HhHHHHcCCC-
Q psy543 19 CGTKLVVVDFTAS-WCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------QDLAAAQGVS- 73 (278)
Q Consensus 19 ~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------~~l~~~~~v~- 73 (278)
..++++||+||++ ||++|+...|.+.+++++|. ++.++.|..+.. ..++++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4679999999999 99999999999999998864 688888876543 3688899988
Q ss_pred --------cccEEEEEe-CCC
Q psy543 74 --------AMPTFIFFR-NKI 85 (278)
Q Consensus 74 --------~~Pt~~~~~-~g~ 85 (278)
++|+++++. +|+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSB
T ss_pred ccccccCCeecEEEEEECCCE
Confidence 999987775 555
No 102
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.96 E-value=6.7e-09 Score=82.03 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=76.8
Q ss_pred hhHHHHHHhccCCCeEEEEEEc--CCChhhHHHHHHHHHHHHHCC-C-cEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTA--SWCGPCQRIAPVFEQLSRKYP-N-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~-~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
.++++..+... ...+|.|-. .-++.+....=+|.+++++|+ . +.+++||+|.++.++.+|+|.++||+++|++|
T Consensus 24 ~~~~~~~~~~~--~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 24 ESRLDDWLTQA--PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred cccHHHHHhCC--CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 36677777544 344444433 257888888889999999998 3 89999999999999999999999999999999
Q ss_pred C--------CCHhHHHHHHHHHhcCCC
Q psy543 85 I--------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 85 ~--------~~~~~l~~~i~~~~~~~~ 103 (278)
+ .+.+++.++|++++....
T Consensus 102 k~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 102 NYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9 688999999999987654
No 103
>KOG0191|consensus
Probab=98.95 E-value=2.8e-09 Score=99.46 Aligned_cols=94 Identities=23% Similarity=0.480 Sum_probs=80.3
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
...+|...+... +..++|.||+|||++|+.+.|.+++++..+. .+.+..+|++....++.+++|..+||+++|.+|
T Consensus 150 ~~~~~~~~~~~~-~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~ 228 (383)
T KOG0191|consen 150 TKDNFDETVKDS-DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPG 228 (383)
T ss_pred cccchhhhhhcc-CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCC
Confidence 446677666543 4789999999999999999999999999774 699999999999999999999999999999876
Q ss_pred C---------CCHhHHHHHHHHHhcCC
Q psy543 85 I---------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 85 ~---------~~~~~l~~~i~~~~~~~ 102 (278)
. ++.+.+..++....+..
T Consensus 229 ~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 229 EEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred CcccccccccccHHHHHHHHHhhcCCC
Confidence 6 67888888888877764
No 104
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.94 E-value=8e-09 Score=79.85 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=64.3
Q ss_pred ccCCCeEEEEEEcCCChhhHHHHHH-H--HHHHHHCC-CcEEEEEECCC--CHhHHHHcCCCcccEEEEEeC--CC----
Q psy543 18 NCGTKLVVVDFTASWCGPCQRIAPV-F--EQLSRKYP-NAAFFKVDVDQ--NQDLAAAQGVSAMPTFIFFRN--KI---- 85 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~--g~---- 85 (278)
+.++|+++|+|+++||++|+.+... | .++.+.+. +..++.+|++. ...++..|++.++|+++++.. |+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 3457999999999999999999874 3 44555443 67888888874 457889999999999999975 44
Q ss_pred ----CCHhHHHHHHHHHh
Q psy543 86 ----PDPNTLEAKIKQYY 99 (278)
Q Consensus 86 ----~~~~~l~~~i~~~~ 99 (278)
.+++++...|++..
T Consensus 94 ~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 94 WSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EcCCCCHHHHHHHHHHHH
Confidence 67777877777654
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.92 E-value=8.8e-09 Score=86.92 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=57.2
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC--------------------CCHhHHHHcCCCcccEEE
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD--------------------QNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d--------------------~~~~l~~~~~v~~~Pt~~ 79 (278)
.+++++|+||++||++|+.+.|.+.++.+++ ++.++.+..+ ...++++.|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5689999999999999999999999998775 4444444422 124677899999999887
Q ss_pred EEe-CCC-------CCHhHHHHHHHHH
Q psy543 80 FFR-NKI-------PDPNTLEAKIKQY 98 (278)
Q Consensus 80 ~~~-~g~-------~~~~~l~~~i~~~ 98 (278)
++. +|+ ...+.+++.++..
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 775 565 2345555555443
No 106
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.91 E-value=4.8e-09 Score=89.26 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD 61 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d 61 (278)
..|+++||.|||+||++|+...|.|++++++|. ++.++.|+++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 357999999999999999999999999999996 6899999874
No 107
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.91 E-value=5.8e-09 Score=75.87 Aligned_cols=63 Identities=33% Similarity=0.623 Sum_probs=48.9
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
.++|+++|+|+++||++|+.+...+ .++.+.+ .++.++++|.+.........+ .++|+++|+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 4569999999999999999999877 4454422 489999999987765443222 6799999986
No 108
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.91 E-value=9.5e-09 Score=81.06 Aligned_cols=73 Identities=11% Similarity=0.240 Sum_probs=48.6
Q ss_pred HHHHHHh--ccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 11 HFHTEMN--NCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 11 ~f~~~l~--~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+|++.++ +.++|+++|+|+++||++|+.|...+ .++.+... +...+.++.+....-....+ .++||++|+...
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 4555443 45679999999999999999999975 34444442 56666777653311111233 689999999643
No 109
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.89 E-value=6.4e-09 Score=78.10 Aligned_cols=65 Identities=43% Similarity=0.840 Sum_probs=60.3
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECC-CCHhHHHHcC--CCcccEEEEEeCCC
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVD-QNQDLAAAQG--VSAMPTFIFFRNKI 85 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d-~~~~l~~~~~--v~~~Pt~~~~~~g~ 85 (278)
++++++.||++||++|+.+.|.+.++++++. .+.++.+|.. ..+.+...|+ +..+|+++++.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcc
Confidence 6899999999999999999999999999998 5999999997 8899999999 99999999888874
No 110
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.88 E-value=1e-08 Score=72.98 Aligned_cols=66 Identities=26% Similarity=0.617 Sum_probs=50.9
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHH-----cCCCcccEEEEEeCCC----CCHhHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA-----QGVSAMPTFIFFRNKI----PDPNTLEAKI 95 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~g~----~~~~~l~~~i 95 (278)
++.||++||++|+.+.+.|.++ ++.+..+|+++.+..... +++.++|++ ++.+|. .+..++.+.|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEecCCCHHHHHHHh
Confidence 5679999999999999998776 456678999888776655 389999997 466776 5566665554
Q ss_pred H
Q psy543 96 K 96 (278)
Q Consensus 96 ~ 96 (278)
+
T Consensus 76 ~ 76 (77)
T TIGR02200 76 Q 76 (77)
T ss_pred h
Confidence 3
No 111
>KOG0914|consensus
Probab=98.86 E-value=4.1e-09 Score=88.48 Aligned_cols=83 Identities=31% Similarity=0.513 Sum_probs=77.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCC------c
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVS------A 74 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~------~ 74 (278)
++..++.+.+++.+..+..+.++|.|||.|.+.|+...|.+.+|..+|. .+.|.+||+...++.+++|+|. .
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 5677788889999988888999999999999999999999999999997 6999999999999999999985 6
Q ss_pred ccEEEEEeCCC
Q psy543 75 MPTFIFFRNKI 85 (278)
Q Consensus 75 ~Pt~~~~~~g~ 85 (278)
.||+++|++|+
T Consensus 206 LPT~ilFq~gk 216 (265)
T KOG0914|consen 206 LPTYILFQKGK 216 (265)
T ss_pred CCeEEEEccch
Confidence 89999999997
No 112
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.84 E-value=2.2e-08 Score=87.11 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD 61 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d 61 (278)
.|+++||+||++||++|+...|.|++++++|. ++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 56999999999999999999999999999997 6899999874
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.82 E-value=4e-08 Score=81.34 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC-----------------------------CHhHHH
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ-----------------------------NQDLAA 68 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-----------------------------~~~l~~ 68 (278)
+++++||+||++||+.|....+.+.++.++|+ ++.++.|..+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56899999999999999999999999999997 68999988753 124677
Q ss_pred HcCCCcccEEEEEe-CCC-----------------CCHhHHHHHHHHHhcCCC
Q psy543 69 AQGVSAMPTFIFFR-NKI-----------------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 69 ~~~v~~~Pt~~~~~-~g~-----------------~~~~~l~~~i~~~~~~~~ 103 (278)
.|++...|+++++. +|+ .+..++.+.|+..+....
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 89999999999886 555 123678888888887665
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.79 E-value=2.9e-08 Score=69.56 Aligned_cols=64 Identities=23% Similarity=0.551 Sum_probs=50.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh----HHHHcCCCcccEEEEEeCCC----CCHhHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD----LAAAQGVSAMPTFIFFRNKI----PDPNTLEAKI 95 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~----~~~~~l~~~i 95 (278)
+..||++||++|+.+.+.|++ .++.+..+|++.++. +.+.+++.++|++++. |+ .++++|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEEEeeCCHHHHHHHh
Confidence 467999999999999998876 268899999988764 4567999999999875 44 4556665554
No 115
>PLN02412 probable glutathione peroxidase
Probab=98.79 E-value=4e-08 Score=81.23 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=38.8
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD 61 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d 61 (278)
..++++||+||++||++|+...|.|+++.++|. ++.++.|+++
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 356999999999999999999999999999997 5899999874
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.77 E-value=4.2e-08 Score=65.45 Aligned_cols=60 Identities=35% Similarity=0.635 Sum_probs=52.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHH---HcCCCcccEEEEEeCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA---AQGVSAMPTFIFFRNK 84 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~g 84 (278)
++.||+.||++|+.+.+.+.++....+++.++.++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999984444589999999999887654 8899999999999864
No 117
>KOG3414|consensus
Probab=98.72 E-value=1.8e-07 Score=71.98 Aligned_cols=101 Identities=21% Similarity=0.396 Sum_probs=88.7
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+..++|..+.++.+.....+++|+-|...|.+.|..|...|.++++...+ +.++.+|+++.+++.+-|++...||++||
T Consensus 5 Lp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFF 84 (142)
T ss_pred ccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEE
Confidence 45788999999999888889999999999999999999999999998875 77889999999999999999999999998
Q ss_pred eCCC------------------CCHhHHHHHHHHHhcCCC
Q psy543 82 RNKI------------------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 82 ~~g~------------------~~~~~l~~~i~~~~~~~~ 103 (278)
-+++ .+.+++...++..+.++.
T Consensus 85 fn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 85 FNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred EcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 7776 567788888877665544
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.71 E-value=1.4e-07 Score=81.21 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=61.9
Q ss_pred HHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC-----------CCHhHHHHcCCCcccEEEE
Q psy543 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD-----------QNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 12 f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d-----------~~~~l~~~~~v~~~Pt~~~ 80 (278)
-++.|....++.-|+.||.+.|+.|+.+.|.+..++++| ++.+..|++| .+.+++++++|..+|++++
T Consensus 111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 345566556789999999999999999999999999999 8888888887 3578999999999999988
Q ss_pred EeCC
Q psy543 81 FRNK 84 (278)
Q Consensus 81 ~~~g 84 (278)
+..+
T Consensus 190 v~~~ 193 (215)
T PF13728_consen 190 VNPN 193 (215)
T ss_pred EECC
Confidence 8754
No 119
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.71 E-value=1.5e-07 Score=73.09 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=57.7
Q ss_pred ecChhHHHHHHhc--cCCCeEEEEEEc-------CCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCH-------hHHH
Q psy543 6 INSDAHFHTEMNN--CGTKLVVVDFTA-------SWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQ-------DLAA 68 (278)
Q Consensus 6 i~s~~~f~~~l~~--~~~k~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~-------~l~~ 68 (278)
+..-++|.+.++. .++++++|.|++ +||+.|++..|.+++.....+ +..++.|.+...+ .+.+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4567888888875 566899999996 599999999999998888776 7899988884432 2333
Q ss_pred --HcCCCcccEEEEEeCCC
Q psy543 69 --AQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 69 --~~~v~~~Pt~~~~~~g~ 85 (278)
++++.++||++-+..++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp --CC---SSSEEEECTSS-
T ss_pred cceeeeeecceEEEECCCC
Confidence 59999999999998766
No 120
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.70 E-value=5.8e-08 Score=76.86 Aligned_cols=87 Identities=23% Similarity=0.499 Sum_probs=55.7
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHc---CCCcccEEEEEeC-CC
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ---GVSAMPTFIFFRN-KI 85 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~~~-g~ 85 (278)
++..+.++....+.-++.|..+|||.|++..|.+.++++..|++.+-.+..|+++++..+| +..++|+++++.+ |+
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 3444556555667888999999999999999999999999998888888888888877654 6789999999965 44
Q ss_pred ------CCHhHHHHHHH
Q psy543 86 ------PDPNTLEAKIK 96 (278)
Q Consensus 86 ------~~~~~l~~~i~ 96 (278)
.-+..+.+.+.
T Consensus 110 ~lg~wgerP~~~~~~~~ 126 (129)
T PF14595_consen 110 ELGRWGERPKEVQELVD 126 (129)
T ss_dssp EEEEEESS-HHHH----
T ss_pred EeEEEcCCCHHHhhccc
Confidence 45555555443
No 121
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.68 E-value=9.7e-08 Score=79.90 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=53.3
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEE------EEEECCC-----------------------------C
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF------FKVDVDQ-----------------------------N 63 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~------~~vd~d~-----------------------------~ 63 (278)
-.||+.||.|||+||++|+...|.+.+++++ ++.+ ..||.++ .
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3579999999999999999999999999764 3444 5555543 2
Q ss_pred HhHHHHcCCCcccEE-EEEe-CCC--------CCHhHHHH
Q psy543 64 QDLAAAQGVSAMPTF-IFFR-NKI--------PDPNTLEA 93 (278)
Q Consensus 64 ~~l~~~~~v~~~Pt~-~~~~-~g~--------~~~~~l~~ 93 (278)
..++..|++.++|+. ++++ +|+ .+.+++++
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 246678999999776 4554 555 45555554
No 122
>KOG2501|consensus
Probab=98.66 E-value=4.3e-08 Score=79.06 Aligned_cols=66 Identities=23% Similarity=0.561 Sum_probs=53.4
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC----CcEEEEEECCCC-------------------------HhHHHHc
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP----NAAFFKVDVDQN-------------------------QDLAAAQ 70 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~-------------------------~~l~~~~ 70 (278)
.||.|.++|.|.||+||+.+.|.+.+++++.. .+.++-|+-|.. .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 46999999999999999999999988887664 366666666542 3678899
Q ss_pred CCCcccEEEEEe-CCC
Q psy543 71 GVSAMPTFIFFR-NKI 85 (278)
Q Consensus 71 ~v~~~Pt~~~~~-~g~ 85 (278)
.|.++|++++.+ +|.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 999999998887 454
No 123
>smart00594 UAS UAS domain.
Probab=98.64 E-value=3.2e-07 Score=71.88 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECCCC--HhHHHHcCCCcccEEEEEeC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVDQN--QDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~~ 83 (278)
..+|+++|+|+++||++|+.+...+ .++.+... +..+..+|++.. ..++..|++.++|+++++..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDP 95 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEec
Confidence 4568999999999999999998854 44544443 577778887654 56899999999999999963
No 124
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.63 E-value=1.5e-07 Score=76.46 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=38.7
Q ss_pred ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEEC
Q psy543 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDV 60 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~ 60 (278)
+-+||++||.|||+||++|+...|.+.+++++|. ++.++.|++
T Consensus 19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3457899999999999999999999999999996 689999986
No 125
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.57 E-value=5.3e-07 Score=65.89 Aligned_cols=75 Identities=27% Similarity=0.398 Sum_probs=60.8
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH----hHHHHcC--CCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ----DLAAAQG--VSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 24 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
-++.|+.+||++|++....|+++..++.++.+..+|++..+ ++...++ +..+|+++ .+|+ -..++|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEcCHHHHHHHH
Confidence 36789999999999999999999988788999999998753 4555554 58999975 4666 6788888888
Q ss_pred HHHhc
Q psy543 96 KQYYG 100 (278)
Q Consensus 96 ~~~~~ 100 (278)
++.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 87764
No 126
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.55 E-value=4.1e-07 Score=70.63 Aligned_cols=65 Identities=29% Similarity=0.536 Sum_probs=54.1
Q ss_pred cCCCeEEEEEEcC-CChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------HhHHHHcCCC-
Q psy543 19 CGTKLVVVDFTAS-WCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------QDLAAAQGVS- 73 (278)
Q Consensus 19 ~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------~~l~~~~~v~- 73 (278)
-.++++||.||+. ||+.|+...+.+.++.++|+ ++.++.|..+.. ..+++.|++.
T Consensus 23 l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 23 LKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred HCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 3569999999999 99999999999999999886 799999998653 3567777777
Q ss_pred -----cccEEEEEeC
Q psy543 74 -----AMPTFIFFRN 83 (278)
Q Consensus 74 -----~~Pt~~~~~~ 83 (278)
.+|+++++..
T Consensus 103 ~~~~~~~p~~~lid~ 117 (124)
T PF00578_consen 103 EKDTLALPAVFLIDP 117 (124)
T ss_dssp TTTSEESEEEEEEET
T ss_pred ccCCceEeEEEEECC
Confidence 7787777764
No 127
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.54 E-value=6.2e-07 Score=74.12 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=39.8
Q ss_pred cCCCeEEEEEEcCC-ChhhHHHHHHHHHHHHHCCCcEEEEEECCC
Q psy543 19 CGTKLVVVDFTASW-CGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62 (278)
Q Consensus 19 ~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~ 62 (278)
-.|+++||+||+.| |++|....|.|.++++++.++.++.|+.|.
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 35689999999999 999999999999999998889999998875
No 128
>KOG3425|consensus
Probab=98.51 E-value=7.5e-07 Score=68.13 Aligned_cols=77 Identities=25% Similarity=0.542 Sum_probs=61.7
Q ss_pred ChhHHHHHHhcc-CCCeEEEEEEc--------CCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCH-------hHHHHc
Q psy543 8 SDAHFHTEMNNC-GTKLVVVDFTA--------SWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQ-------DLAAAQ 70 (278)
Q Consensus 8 s~~~f~~~l~~~-~~k~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~-------~l~~~~ 70 (278)
-.++|++.+++. +++.+++.|++ +|||.|.+..|.+.+..+..+ ++.|+.|++-..+ .+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 457788888743 45669999997 799999999999999888777 8999999986543 455666
Q ss_pred CC-CcccEEEEEeCC
Q psy543 71 GV-SAMPTFIFFRNK 84 (278)
Q Consensus 71 ~v-~~~Pt~~~~~~g 84 (278)
++ .++||++-|+++
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 77 899999999853
No 129
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.48 E-value=3.2e-07 Score=74.55 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=37.6
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD 61 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d 61 (278)
..||++||+|||+||+ |+...|.|++++++|. ++.++.|+++
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3579999999999999 9999999999999996 6888888764
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=1.7e-06 Score=76.08 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=71.3
Q ss_pred HHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-----------HhHHHHcCCCcccEEEE
Q psy543 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-----------QDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 12 f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~ 80 (278)
-++.|+...++.-|+.||...|+.|+++.|.+..++++| ++.+..|++|.. ...+++++|..+|++++
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 344555555678999999999999999999999999999 688888887765 45889999999999888
Q ss_pred EeCCC----------CCHhHHHHHHHHHhc
Q psy543 81 FRNKI----------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 81 ~~~g~----------~~~~~l~~~i~~~~~ 100 (278)
..... .+.++|.+.|...+.
T Consensus 220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 220 VNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 86543 777888777766554
No 131
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.44 E-value=9.1e-07 Score=74.22 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCeE-EEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECC
Q psy543 20 GTKLV-VVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVD 61 (278)
Q Consensus 20 ~~k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d 61 (278)
.|+++ |+.+||+||++|+...|.|++++++|. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46754 456699999999999999999999986 6899999864
No 132
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.43 E-value=1.5e-06 Score=73.16 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=52.1
Q ss_pred cCCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC-------------------------CHhHHHHc
Q psy543 19 CGTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ-------------------------NQDLAAAQ 70 (278)
Q Consensus 19 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------------------------~~~l~~~~ 70 (278)
..|+++||+|| +.||++|....|.|.++.+++. ++.++.|.++. ...+++.|
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 35689999999 9999999999999999988874 67777777653 22567778
Q ss_pred CCC------cccEEEEEe-CCC
Q psy543 71 GVS------AMPTFIFFR-NKI 85 (278)
Q Consensus 71 ~v~------~~Pt~~~~~-~g~ 85 (278)
++. ..|+.+++. +|+
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~ 130 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGV 130 (187)
T ss_pred CCcccCCCceeeEEEEECCCCE
Confidence 876 458777775 555
No 133
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.43 E-value=1.1e-06 Score=63.53 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=48.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-----hHHHHcCCCcccEEEEEeCCC--CCHhHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-----DLAAAQGVSAMPTFIFFRNKI--PDPNTLEAK 94 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~ 94 (278)
|+.|+++||++|+.+.+.|.++.-. +...++.++.+.+. .+.+.+++..+|+++ .+|+ -..+++.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~igg~~~~~~~ 74 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFIGGCSDLLAL 74 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEEcCHHHHHHH
Confidence 4689999999999999999998621 13778888876554 266778999999984 3554 344444443
No 134
>KOG0913|consensus
Probab=98.40 E-value=7.6e-08 Score=81.87 Aligned_cols=85 Identities=22% Similarity=0.409 Sum_probs=72.1
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
+.+++...++ .-.++.|+|+||+.|+...|+|+.++.--. ++.+.+||++.++.+.-+|-+.+.||++-.++|.
T Consensus 30 ~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 30 DEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE 105 (248)
T ss_pred cccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc
Confidence 6778888774 468899999999999999999999987433 7999999999999999999999999999999997
Q ss_pred -------CCHhHHHHHHH
Q psy543 86 -------PDPNTLEAKIK 96 (278)
Q Consensus 86 -------~~~~~l~~~i~ 96 (278)
++..++..++.
T Consensus 106 FrrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 106 FRRYSGARDKNDFISFEE 123 (248)
T ss_pred cccccCcccchhHHHHHH
Confidence 55555555544
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.40 E-value=2.1e-06 Score=71.21 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=37.3
Q ss_pred CCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 20 GTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 20 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
.++++||+|| +.||++|....+.|.++++++. ++.++.|.++.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4689999999 8999999999999999999885 68888777653
No 136
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.40 E-value=1.4e-06 Score=69.25 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=37.6
Q ss_pred CCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC
Q psy543 20 GTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN 63 (278)
Q Consensus 20 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~ 63 (278)
.+++++|.|| +.||+.|....+.+.++++++. ++.++.|..+..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4689999999 5899999999999999998875 688888887653
No 137
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.37 E-value=1e-05 Score=63.17 Aligned_cols=97 Identities=22% Similarity=0.397 Sum_probs=78.4
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCccc-EEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMP-TFIF 80 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~P-t~~~ 80 (278)
+..+++..+.++++....++.+++-|..+|-+.|.++...|.+++++.++ ..++.||+++-|++.+-|.+. -| |++|
T Consensus 2 L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMF 80 (133)
T ss_dssp SEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEE
T ss_pred CcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEE
Confidence 35788999999999888889999999999999999999999999998875 788999999999999999999 77 4666
Q ss_pred EeCCC------------------CCHhHHHHHHHHHhc
Q psy543 81 FRNKI------------------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 81 ~~~g~------------------~~~~~l~~~i~~~~~ 100 (278)
|-+++ .+.+++...++....
T Consensus 81 F~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 81 FFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp EETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 64444 567777777776553
No 138
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.34 E-value=1.8e-06 Score=69.07 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=45.8
Q ss_pred CCCeEEEEEEcCC-ChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH---hHHHHcCCCccc
Q psy543 20 GTKLVVVDFTASW-CGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ---DLAAAQGVSAMP 76 (278)
Q Consensus 20 ~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~P 76 (278)
.+|++||+||+.| |++|+...|.|.+++++++++.++.|+.+... ...+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 5689999999998 69999999999999999999999999987643 233444544444
No 139
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.31 E-value=6.8e-06 Score=71.86 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=68.3
Q ss_pred HHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC-----------CHhHHHHcCCCcccEEEEE
Q psy543 13 HTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-----------NQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 13 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~ 81 (278)
++.|+...++.-|++||.+.|+.|+++.|++..++++| ++.++.|++|. +...+++++|..+|+++++
T Consensus 135 ~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 44555545578999999999999999999999999999 67777777664 2346789999999998888
Q ss_pred eCCC----------CCHhHHHHHHHHHhc
Q psy543 82 RNKI----------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 82 ~~g~----------~~~~~l~~~i~~~~~ 100 (278)
.... .+.++|.+.|...+.
T Consensus 214 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 214 DPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 6543 677888777776654
No 140
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.29 E-value=4.6e-06 Score=58.09 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=46.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHc----CCCcccEEEEEeCCC----CCHhHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ----GVSAMPTFIFFRNKI----PDPNTLEAK 94 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~----~v~~~Pt~~~~~~g~----~~~~~l~~~ 94 (278)
++.|+++||++|+++...+.+. ++.+..++++..+...+.+ ++..+|++++ +|+ .+.++|+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i~g~~~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHLSGFRPDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEEecCCHHHHHhh
Confidence 5679999999999998888763 6778888888776554444 6889999976 333 455555443
No 141
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.28 E-value=5.1e-06 Score=59.44 Aligned_cols=66 Identities=14% Similarity=0.391 Sum_probs=51.9
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-------CCHhHHHHHHH
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI-------PDPNTLEAKIK 96 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~-------~~~~~l~~~i~ 96 (278)
.+++++|+.|..+...+++++..+ ++.+-.+|....+++ .+|+|.++|++++ +|+ ++.++|+++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEEEecCCCHHHHHHHhC
Confidence 346888999999999999999999 488888888666766 9999999999965 343 66777777663
No 142
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.28 E-value=8.5e-06 Score=61.73 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=62.9
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCCH----hHHHHcCCC-cccE
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQ----DLAAAQGVS-AMPT 77 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~----~l~~~~~v~-~~Pt 77 (278)
+.|++.++++++++.+..++++|.=.++.|+-..+....|++.....++ +.++.+|+-+.. .++.+|||. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 5789999999999988889999999999999999999999999998875 999999998875 478899997 5699
Q ss_pred EEEEeCCC
Q psy543 78 FIFFRNKI 85 (278)
Q Consensus 78 ~~~~~~g~ 85 (278)
++++++|+
T Consensus 82 ~ili~~g~ 89 (105)
T PF11009_consen 82 VILIKNGK 89 (105)
T ss_dssp EEEEETTE
T ss_pred EEEEECCE
Confidence 99999998
No 143
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.25 E-value=7.4e-06 Score=60.09 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=58.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH----hHHHHcCC--CcccEEEEEeCCC--CCHhHHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ----DLAAAQGV--SAMPTFIFFRNKI--PDPNTLEAKIK 96 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~----~l~~~~~v--~~~Pt~~~~~~g~--~~~~~l~~~i~ 96 (278)
|+.|..+||++|+++...|.++..+++++.+..+|++... ++...++- ..+|++++ +|+ -..++|.++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHHH
Confidence 6789999999999999999999877778889999987543 56666664 79999943 555 66778888777
Q ss_pred HHhc
Q psy543 97 QYYG 100 (278)
Q Consensus 97 ~~~~ 100 (278)
+..+
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 6543
No 144
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.23 E-value=1.1e-05 Score=67.98 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=59.8
Q ss_pred cCCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC-------------------------CHhHHHHc
Q psy543 19 CGTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ-------------------------NQDLAAAQ 70 (278)
Q Consensus 19 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------------------------~~~l~~~~ 70 (278)
-.++++||.|| +.||+.|....+.|.++++++. ++.++.|+.|. ...+++.|
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 35689999999 9999999999999999999885 67787777654 23677888
Q ss_pred CCC----cc--cEEEEEe-CCC------------CCHhHHHHHHHH
Q psy543 71 GVS----AM--PTFIFFR-NKI------------PDPNTLEAKIKQ 97 (278)
Q Consensus 71 ~v~----~~--Pt~~~~~-~g~------------~~~~~l~~~i~~ 97 (278)
++. ++ |+.+++. +|+ ++.+++.+.|+.
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 883 45 8877776 555 455666665543
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.21 E-value=8.5e-06 Score=65.41 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=36.8
Q ss_pred CeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC
Q psy543 22 KLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN 63 (278)
Q Consensus 22 k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~ 63 (278)
++++|.|| ++||+.|....|.+.++++++. ++.++.|+.+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 78888888 9999999999999999999886 688988887653
No 146
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.18 E-value=1.4e-05 Score=68.14 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=60.8
Q ss_pred CCCeEEE-EEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC---------------------------CHhHHHH
Q psy543 20 GTKLVVV-DFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ---------------------------NQDLAAA 69 (278)
Q Consensus 20 ~~k~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~---------------------------~~~l~~~ 69 (278)
.++.++| .||++||+.|....+.|.++++++. ++.++.|+++. ...+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4576655 6899999999999999999988885 67777777652 2357778
Q ss_pred cCCC------cccEEEEEe-CCC------------CCHhHHHHHHHHHhc
Q psy543 70 QGVS------AMPTFIFFR-NKI------------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 70 ~~v~------~~Pt~~~~~-~g~------------~~~~~l~~~i~~~~~ 100 (278)
|++. .+|+.+++. +|+ ++.+++.+.|+.+.-
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 8884 589888886 444 677777777776543
No 147
>PRK15000 peroxidase; Provisional
Probab=98.17 E-value=1.3e-05 Score=68.25 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=61.2
Q ss_pred CCCeEEEEEEcC-CChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC----------------------------HhHHH
Q psy543 20 GTKLVVVDFTAS-WCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN----------------------------QDLAA 68 (278)
Q Consensus 20 ~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~----------------------------~~l~~ 68 (278)
+++++||.||+. ||+.|....+.|.++++++. ++.++.|.+|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 568999999995 99999999999999999886 688888877631 24667
Q ss_pred HcCCC------cccEEEEEe-CCC------------CCHhHHHHHHHHH
Q psy543 69 AQGVS------AMPTFIFFR-NKI------------PDPNTLEAKIKQY 98 (278)
Q Consensus 69 ~~~v~------~~Pt~~~~~-~g~------------~~~~~l~~~i~~~ 98 (278)
.|++. ++|+.+++. +|+ ++.+++.+.|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 688888876 555 5667777666543
No 148
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.16 E-value=1.3e-05 Score=65.57 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=47.8
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHH-H--HHHHHHCC-CcEEEEEECCCCHhHHHHc--------CCCcccE
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPV-F--EQLSRKYP-NAAFFKVDVDQNQDLAAAQ--------GVSAMPT 77 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 77 (278)
+.|+..- .++|+++|.++++||..|+.|... + .++++-+. +..-++||.++.|++...| +.-++|+
T Consensus 28 ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 4455543 345999999999999999999863 3 44555443 5788899999999999888 7889999
Q ss_pred EEEEeC
Q psy543 78 FIFFRN 83 (278)
Q Consensus 78 ~~~~~~ 83 (278)
.+|...
T Consensus 106 ~vfltP 111 (163)
T PF03190_consen 106 TVFLTP 111 (163)
T ss_dssp EEEE-T
T ss_pred eEEECC
Confidence 998864
No 149
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.15 E-value=8.4e-06 Score=68.38 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=54.6
Q ss_pred hccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC--------CH---hHHH-HcCCCcccEEEEEe
Q psy543 17 NNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ--------NQ---DLAA-AQGVSAMPTFIFFR 82 (278)
Q Consensus 17 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~--------~~---~l~~-~~~v~~~Pt~~~~~ 82 (278)
+.-.||++||.|||+||++|++ .|.|++++++|. ++.++.+.|+. .. .+++ +|++ .+|.+-=+.
T Consensus 21 s~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~k~d 98 (183)
T PRK10606 21 EKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFSKIE 98 (183)
T ss_pred HHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEEEEc
Confidence 3345799999999999999975 889999999996 68999998852 12 3343 4665 355443333
Q ss_pred -CCCCCHhHHHHHHHHHhc
Q psy543 83 -NKIPDPNTLEAKIKQYYG 100 (278)
Q Consensus 83 -~g~~~~~~l~~~i~~~~~ 100 (278)
+| ....-|-++|.+..+
T Consensus 99 vnG-~~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 99 VNG-EGRHPLYQKLIAAAP 116 (183)
T ss_pred cCC-CCCCHHHHHHHHhCC
Confidence 34 344445566665443
No 150
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.12 E-value=1.1e-05 Score=65.34 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=38.1
Q ss_pred cCCCeEEEEEEcC-CChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCH
Q psy543 19 CGTKLVVVDFTAS-WCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQ 64 (278)
Q Consensus 19 ~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~ 64 (278)
.+++++||.||+. ||+.|....+.+.++++++. ++.++.|..+...
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~ 76 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPE 76 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 3568999999986 68889999999999988875 6889988886543
No 151
>KOG3171|consensus
Probab=98.10 E-value=2.5e-05 Score=65.76 Aligned_cols=82 Identities=13% Similarity=0.342 Sum_probs=73.3
Q ss_pred eEEecChhHHHHHHhcc-CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNC-GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
|.++++..+|-..|.+. +...++|+.|-+--.-|..+...+.-||.+||.++|+++-.+.. ....+|...++||+++|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~LliY 218 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLLIY 218 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceEEEe
Confidence 67899999999988754 55788999999999999999999999999999999999986654 45788999999999999
Q ss_pred eCCC
Q psy543 82 RNKI 85 (278)
Q Consensus 82 ~~g~ 85 (278)
++|.
T Consensus 219 kgGe 222 (273)
T KOG3171|consen 219 KGGE 222 (273)
T ss_pred eCCc
Confidence 9997
No 152
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.07 E-value=1.1e-05 Score=64.49 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=42.7
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
+.+|+.||++||++|+...|.|.++.+++. ++.++.|..+..........-..+|.-++.+
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D 87 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYAD 87 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEEC
Confidence 445555569999999999999999999884 7999999988765543222223334334444
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.5e-05 Score=60.75 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=63.6
Q ss_pred ccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECCC----------------CHhHHHHcCCCcccE
Q psy543 18 NCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVDQ----------------NQDLAAAQGVSAMPT 77 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~----------------~~~l~~~~~v~~~Pt 77 (278)
...++..+++|-++.|..|.++...+ .++.+-+. .+.++.+++.. ..++++.|+|+++||
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 34569999999999999999999876 44555443 58888888753 248999999999999
Q ss_pred EEEEeC-CC--------CCHhHHHHHHHHHh
Q psy543 78 FIFFRN-KI--------PDPNTLEAKIKQYY 99 (278)
Q Consensus 78 ~~~~~~-g~--------~~~~~l~~~i~~~~ 99 (278)
++||+. |+ .+++++...++-..
T Consensus 119 fvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 999974 45 67777777666544
No 154
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.02 E-value=4e-05 Score=75.06 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=66.5
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEE----eCCCC
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFF----RNKIP 86 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~----~~g~~ 86 (278)
+..+.|+.-.+..-+-.|.++||+.|......+++++...|++..-.+|++..++++++|+|.++|++++= ..|+.
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~~~~~G~~ 545 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQQVYFGKK 545 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEECCEEEEeeCC
Confidence 33444544443344556789999999999999999999999999999999999999999999999999852 22436
Q ss_pred CHhHHHHHH
Q psy543 87 DPNTLEAKI 95 (278)
Q Consensus 87 ~~~~l~~~i 95 (278)
+.+++..+|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 666666554
No 155
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.01 E-value=1.3e-05 Score=63.77 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=38.1
Q ss_pred CCCeEEEEEEcCCChh-hHHHHHHHHHHHHHCCC-----cEEEEEECCC
Q psy543 20 GTKLVVVDFTASWCGP-CQRIAPVFEQLSRKYPN-----AAFFKVDVDQ 62 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~-----v~~~~vd~d~ 62 (278)
.++++||.||++||++ |....+.++++++++.+ +.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5689999999999998 99999999999998862 8898888764
No 156
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=4.5e-05 Score=74.07 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=70.5
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC-----
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI----- 85 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~----- 85 (278)
+..+.|++-.+..-+..|++++|++|......+++++...|++.+-.+|....++++++|++.++|++++ +|+
T Consensus 106 ~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g 183 (517)
T PRK15317 106 EVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEFGQG 183 (517)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEEEec
Confidence 3444555544455688999999999999999999999999999999999999999999999999999975 333
Q ss_pred -CCHhHHHHHHHHH
Q psy543 86 -PDPNTLEAKIKQY 98 (278)
Q Consensus 86 -~~~~~l~~~i~~~ 98 (278)
.+.+++.+.+.+.
T Consensus 184 ~~~~~~~~~~~~~~ 197 (517)
T PRK15317 184 RMTLEEILAKLDTG 197 (517)
T ss_pred CCCHHHHHHHHhcc
Confidence 6666777766654
No 157
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.98 E-value=5.1e-05 Score=67.08 Aligned_cols=79 Identities=9% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC----------------------------CHhHHH
Q psy543 20 GTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ----------------------------NQDLAA 68 (278)
Q Consensus 20 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~ 68 (278)
+++++|+.|| +.||++|....+.|.++++++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567888887 8999999999999999999885 67787777754 135777
Q ss_pred HcCCC-----cccEEEEEe-CCC------------CCHhHHHHHHHHH
Q psy543 69 AQGVS-----AMPTFIFFR-NKI------------PDPNTLEAKIKQY 98 (278)
Q Consensus 69 ~~~v~-----~~Pt~~~~~-~g~------------~~~~~l~~~i~~~ 98 (278)
.||+. ..|+.++++ +|+ ++.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88875 578888876 555 5566666655543
No 158
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.97 E-value=4.9e-05 Score=54.57 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=47.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-----hHHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-----DLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
|+.|+++||++|+.+.+.|+++.. ...++.++.+... .+.+..++.++|++ |.+|+ ...+++.+..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~igg~~~~~~~~ 74 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIGGCDDLMALH 74 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEcCHHHHHHHH
Confidence 467999999999999999999865 4567777776552 34566788999997 34555 4445554443
No 159
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.92 E-value=5.1e-05 Score=51.41 Aligned_cols=51 Identities=24% Similarity=0.513 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHH----HHcCCCcccEEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA----AAQGVSAMPTFIF 80 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~ 80 (278)
++.|+.+||++|+.....|++. ++.+..+|++..++.. +..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5779999999999999998554 6889999999886433 3349999999886
No 160
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.90 E-value=8.7e-05 Score=53.36 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=48.4
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC---HhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN---QDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
+.-|+.|+.+||++|++....|++. ++.+..+|++.. ..+....+...+|.+++ +|+ ...++|.++|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l 78 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYL 78 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHh
Confidence 3446679999999999999999754 677778888776 34555678899999854 555 4445554443
No 161
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.90 E-value=3.3e-05 Score=61.12 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=39.7
Q ss_pred CCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHh
Q psy543 20 GTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQD 65 (278)
Q Consensus 20 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~ 65 (278)
.+++++|.|| +.||+.|....|.+.++++++. ++.++.|..+....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~ 69 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS 69 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 4689999999 7899999999999999999874 79999999875443
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.87 E-value=4.9e-05 Score=65.41 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=58.1
Q ss_pred CCCe-EEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------------HhHHHH
Q psy543 20 GTKL-VVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------------QDLAAA 69 (278)
Q Consensus 20 ~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------------~~l~~~ 69 (278)
.+++ +|+.||++||++|....+.|.++++++. ++.++.|++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4565 4689999999999999999999999885 788888887652 246677
Q ss_pred cCCC-------cccEEEEEe-CCC------------CCHhHHHHHHHHH
Q psy543 70 QGVS-------AMPTFIFFR-NKI------------PDPNTLEAKIKQY 98 (278)
Q Consensus 70 ~~v~-------~~Pt~~~~~-~g~------------~~~~~l~~~i~~~ 98 (278)
|++. .+|+++++. +|+ ++.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763 578877776 455 4456666666543
No 163
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.86 E-value=0.0001 Score=63.49 Aligned_cols=79 Identities=13% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCCeEE-EEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------------HhHHHH
Q psy543 20 GTKLVV-VDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------------QDLAAA 69 (278)
Q Consensus 20 ~~k~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------------~~l~~~ 69 (278)
++|+++ +.||++||+.|....+.|.+++.++. ++.++.|++|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 48899999999999999999999885 788888887642 245667
Q ss_pred cCCC-------cccEEEEEe-CCC------------CCHhHHHHHHHHH
Q psy543 70 QGVS-------AMPTFIFFR-NKI------------PDPNTLEAKIKQY 98 (278)
Q Consensus 70 ~~v~-------~~Pt~~~~~-~g~------------~~~~~l~~~i~~~ 98 (278)
|++. .+|+.+++. +|+ ++.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7763 367777776 444 5667777776654
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=97.82 E-value=0.00012 Score=63.32 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=56.2
Q ss_pred CCC-eEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------------HhHHHH
Q psy543 20 GTK-LVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------------QDLAAA 69 (278)
Q Consensus 20 ~~k-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------------~~l~~~ 69 (278)
.++ .+|+.||++||+.|....+.|.++++++. ++.++.|.+|.. ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 45567899999999999999999998885 688888877632 246677
Q ss_pred cCCC-------cccEEEEEe-CCC------------CCHhHHHHHHHHH
Q psy543 70 QGVS-------AMPTFIFFR-NKI------------PDPNTLEAKIKQY 98 (278)
Q Consensus 70 ~~v~-------~~Pt~~~~~-~g~------------~~~~~l~~~i~~~ 98 (278)
|++. .+|+.+++. +|+ ++.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7764 457777775 455 4455666666544
No 165
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.81 E-value=0.00012 Score=62.51 Aligned_cols=77 Identities=13% Similarity=0.263 Sum_probs=55.8
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCC---------------------------HhHHHHcCCC
Q psy543 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQN---------------------------QDLAAAQGVS 73 (278)
Q Consensus 23 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~---------------------------~~l~~~~~v~ 73 (278)
.+|+.||++||+.|....+.|.++++++. ++.++.|+++.. ..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999999885 688888887641 3567788875
Q ss_pred ----c----ccEEEEEe-CCC------------CCHhHHHHHHHHHh
Q psy543 74 ----A----MPTFIFFR-NKI------------PDPNTLEAKIKQYY 99 (278)
Q Consensus 74 ----~----~Pt~~~~~-~g~------------~~~~~l~~~i~~~~ 99 (278)
+ +|+.+++. +|+ ++.+++.+.|+.+-
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 2 34456664 455 45667777766543
No 166
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.78 E-value=0.00029 Score=54.66 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=60.4
Q ss_pred ccCCCeEEEEEEcC----CChhhHHHH--HHHHHHHHHCCCcEEEEEECCCC--HhHHHHcCCCcccEEEEEe--CCC--
Q psy543 18 NCGTKLVVVDFTAS----WCGPCQRIA--PVFEQLSRKYPNAAFFKVDVDQN--QDLAAAQGVSAMPTFIFFR--NKI-- 85 (278)
Q Consensus 18 ~~~~k~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~--~g~-- 85 (278)
+.+.|+++|++|++ ||..|+... |.+.++... +..+...|++.. ..++..+++.++|++.++. +++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 45679999999999 999997654 344444432 688888888765 4688999999999998883 332
Q ss_pred --------CCHhHHHHHHHHHhc
Q psy543 86 --------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 86 --------~~~~~l~~~i~~~~~ 100 (278)
.++++|...|.....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHh
Confidence 677888877776653
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.77 E-value=0.0002 Score=69.47 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=70.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEe----CCCC
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR----NKIP 86 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~----~g~~ 86 (278)
+..+.|++-.+..-+..|.++.|++|......+.+++...|++..-.+|....++++++|++.++|++++-. .|..
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~ 186 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRM 186 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCC
Confidence 344445554445668899999999999999999999999999999999999999999999999999997621 1226
Q ss_pred CHhHHHHHHHHH
Q psy543 87 DPNTLEAKIKQY 98 (278)
Q Consensus 87 ~~~~l~~~i~~~ 98 (278)
+.+++.+.+.+.
T Consensus 187 ~~~~~~~~l~~~ 198 (515)
T TIGR03140 187 DLAELLEKLEET 198 (515)
T ss_pred CHHHHHHHHhhc
Confidence 666776666554
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.73 E-value=0.00036 Score=50.54 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=51.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHH---HHcCCCcccEEEEEeCCC----CCHhHHHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA---AAQGVSAMPTFIFFRNKI----PDPNTLEAKIKQ 97 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~---~~~~v~~~Pt~~~~~~g~----~~~~~l~~~i~~ 97 (278)
+..|..+||++|++.+..|++. ++.|-.+|++..++.+ ...+...+|++++ ++. .++++|.+.+..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~~Gf~~~~l~~~~~~ 75 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSWSGFRPDMINRLHPA 75 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEEecCCHHHHHHHHHh
Confidence 5678899999999999988653 7999999999887643 3457789999965 333 677777777665
Q ss_pred Hh
Q psy543 98 YY 99 (278)
Q Consensus 98 ~~ 99 (278)
..
T Consensus 76 ~~ 77 (81)
T PRK10329 76 PH 77 (81)
T ss_pred hh
Confidence 43
No 169
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.70 E-value=0.00029 Score=59.82 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=37.1
Q ss_pred CCCeEEEEEEc-CCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 20 GTKLVVVDFTA-SWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 20 ~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
.|++++|.||+ .||+.|....+.|.++++++. ++.++.|+++.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 46899999995 889999999999999999886 78888888763
No 170
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.65 E-value=0.00024 Score=48.94 Aligned_cols=54 Identities=28% Similarity=0.479 Sum_probs=41.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhH----HHHcCCCcccEEEEEeCCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL----AAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~ 85 (278)
++.|+++||++|+.+...|.+. ++.+..+|++.+++. .+..+...+|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4678999999999999999877 377888999887653 3345777888774 3554
No 171
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.65 E-value=0.00026 Score=61.66 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=55.4
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEE--C-------------------------------------
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD--V------------------------------------- 60 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd--~------------------------------------- 60 (278)
.++.+++.|.-+.||+|+++.+.+.++.+. ++.+..+. .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 468889999999999999999999887542 23332221 1
Q ss_pred -----CCCHhHHHHcCCCcccEEEEEeCCC-----CCHhHHHHHHHH
Q psy543 61 -----DQNQDLAAAQGVSAMPTFIFFRNKI-----PDPNTLEAKIKQ 97 (278)
Q Consensus 61 -----d~~~~l~~~~~v~~~Pt~~~~~~g~-----~~~~~l~~~i~~ 97 (278)
+.+..+++++||+++||++ +.+|+ .+.++|.++|++
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLVPGYQGPKEMKAFLDE 229 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEeeCCCCHHHHHHHHHH
Confidence 1234688999999999999 55666 577888887765
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.63 E-value=0.00018 Score=50.63 Aligned_cols=50 Identities=16% Similarity=0.397 Sum_probs=41.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHc---CCCcccEEEE
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ---GVSAMPTFIF 80 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~---~v~~~Pt~~~ 80 (278)
..|..+||+.|+.....|++. ++.+-.+|+++++.....+ +...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 568889999999999999763 7889999999888666555 8889999765
No 173
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.59 E-value=0.00018 Score=51.40 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=39.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHH----HcCCCcccEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA----AQGVSAMPTFI 79 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~v~~~Pt~~ 79 (278)
|+.|+.+||+.|+.....|++. ++.+..+|++.++...+ ..+...+|+++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE
Confidence 3578999999999999999864 57777888888765443 34788999974
No 174
>KOG3170|consensus
Probab=97.57 E-value=0.00099 Score=55.75 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=64.8
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
|..|+-.+=.+++...+.+-.|||+.|...-+.|+-+...|..|+.+||+++|+++-.+.+- ..|.-..+||+++|.
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLVYH 169 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEEee
Confidence 56674433334444556778999999999999999999999999999999999999877652 246778899999999
Q ss_pred CCC
Q psy543 83 NKI 85 (278)
Q Consensus 83 ~g~ 85 (278)
.|.
T Consensus 170 ~G~ 172 (240)
T KOG3170|consen 170 HGA 172 (240)
T ss_pred cch
Confidence 885
No 175
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.53 E-value=0.00071 Score=47.48 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=45.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh---HHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD---LAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~---l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
++.|..+||+.|.+....|.+. ++.+..+|++.++. +....+...+|.++ .+|+ -..++|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~igg~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELIGGSDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEEeCHHHHHHHh
Confidence 5678999999999999888853 67778888877653 33445888999973 3454 4455555443
No 176
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.49 E-value=0.00056 Score=51.48 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=38.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh-------HHHHcCCCcccEEEEEeCCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD-------LAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~-------l~~~~~v~~~Pt~~~~~~g~ 85 (278)
|+.|..+||++|+++...|.++ ++.+..+|++..++ +.+..+...+|.++ -+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCE
Confidence 4569999999999999988766 56666777776543 33334678999973 4454
No 177
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.47 E-value=0.00039 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHH
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQ 45 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~ 45 (278)
.++..++.|..++|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 35899999999999999999999876
No 178
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.46 E-value=0.00055 Score=48.19 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHH----HcCCC-cccEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA----AQGVS-AMPTFI 79 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~v~-~~Pt~~ 79 (278)
++.|+.+||+.|+.....|++. ++.+..+|++..++..+ ..+.. .+|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 4678999999999999999764 68888899988765443 35666 899774
No 179
>PHA03050 glutaredoxin; Provisional
Probab=97.40 E-value=0.00052 Score=52.56 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=43.1
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC---C----HhHHHHcCCCcccEEEE
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ---N----QDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---~----~~l~~~~~v~~~Pt~~~ 80 (278)
..++.+.++ . |+.|..+|||+|++....|+++.-.++ .+..+|+++ . ..+.+.-|...+|++++
T Consensus 5 ~v~~~i~~~---~-V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 5 FVQQRLANN---K-VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHHhccC---C-EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 345555332 2 567999999999999999988754333 455556654 2 23555568889999944
No 180
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.38 E-value=0.00078 Score=47.43 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=40.9
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh----HHHHcCCCcccEEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD----LAAAQGVSAMPTFIF 80 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~ 80 (278)
++.|..+||+.|+.....|++. ++.+..+|++..+. +.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4568899999999999999874 68888899988765 445557788999854
No 181
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.37 E-value=0.0036 Score=51.59 Aligned_cols=77 Identities=17% Similarity=0.348 Sum_probs=64.4
Q ss_pred eEEecChhHHHHHHhccCCCe-EEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCC--cccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKL-VVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVS--AMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~--~~Pt~ 78 (278)
+..+ |.+++..+... +.+ +++.|..........+...++.++++++ .+.|+.+|++..+.+++.|++. .+|++
T Consensus 79 v~~~-t~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~ 155 (184)
T PF13848_consen 79 VPEL-TPENFEKLFSS--PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPAL 155 (184)
T ss_dssp CEEE-STTHHHHHHST--SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEE
T ss_pred cccc-chhhHHHHhcC--CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEE
Confidence 4455 45678777743 344 7888887788889999999999999998 5999999999999999999998 89999
Q ss_pred EEEe
Q psy543 79 IFFR 82 (278)
Q Consensus 79 ~~~~ 82 (278)
+++.
T Consensus 156 vi~~ 159 (184)
T PF13848_consen 156 VIFD 159 (184)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.29 E-value=0.0011 Score=47.97 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=55.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeC-----CC-----CCHhHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN-----KI-----PDPNTLEAK 94 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~-----g~-----~~~~~l~~~ 94 (278)
|+.|..+.|+-|..+...+.++.... .+.+-.||+++++.+..+|+. .+|.+.+-.. +. .+.+.|.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67799999999999999999987665 599999999999999999996 7999665331 12 677777776
Q ss_pred HH
Q psy543 95 IK 96 (278)
Q Consensus 95 i~ 96 (278)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 183
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.23 E-value=0.0057 Score=45.13 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=56.6
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
++.|++.++++.++.. .++++|-|+..+|+ .....+.++|..+. ++.|+.+. ++++++.+++. .|++++|
T Consensus 1 ~~~i~s~~~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~ 71 (97)
T cd02981 1 VKELTSKEELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLF 71 (97)
T ss_pred CeecCCHHHHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEe
Confidence 3578888889887753 47889999999998 56778888998886 68886665 56778888775 4889888
Q ss_pred eCC
Q psy543 82 RNK 84 (278)
Q Consensus 82 ~~g 84 (278)
++.
T Consensus 72 ~~~ 74 (97)
T cd02981 72 KPF 74 (97)
T ss_pred CCc
Confidence 763
No 184
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.19 E-value=0.0049 Score=55.90 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=70.0
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHH------HHHHHHHHHC---CCcEEEEEECCCCHhHHHHcCCC
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIA------PVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVS 73 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~------p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~v~ 73 (278)
|..| |..+|.+++++. +..+|+|+.+--. -+... ..+-+|+.+. .++.|+.||..+...+++++|+.
T Consensus 36 Vi~L-neKNfk~~lKky--d~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKY--DVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp CEEE--TTTHHHHHHH---SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred eEEc-chhHHHHHHHhh--cEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 4566 678999999766 7888889887632 23222 2233444443 38999999999999999999999
Q ss_pred cccEEEEEeCCC-------CCHhHHHHHHHHHhcCC
Q psy543 74 AMPTFIFFRNKI-------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 74 ~~Pt~~~~~~g~-------~~~~~l~~~i~~~~~~~ 102 (278)
..+++.+|++|. .+++.|..+|-.++...
T Consensus 112 E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 112 EEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSS
T ss_pred ccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccc
Confidence 999999999988 89999999999998743
No 185
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.17 E-value=0.0026 Score=62.38 Aligned_cols=95 Identities=8% Similarity=0.134 Sum_probs=77.9
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEe-CCC--
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR-NKI-- 85 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~-~g~-- 85 (278)
.++++..+.+-.+...|+.|+.+.|..|..+...++++++.-+.+.+...|..++..++++|++...|++.+++ +|.
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 34577777766656678888899999999999999999987778999889999999999999999999999995 543
Q ss_pred -------CCHhHHHHHHHHHhcCCC
Q psy543 86 -------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 86 -------~~~~~l~~~i~~~~~~~~ 103 (278)
+...++..+|..++..+.
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~~~~~ 458 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALYNAAG 458 (555)
T ss_pred ceEEEecCccHhHHHHHHHHHHhcC
Confidence 666777777777775553
No 186
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.16 E-value=0.014 Score=46.21 Aligned_cols=99 Identities=13% Similarity=0.310 Sum_probs=73.7
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcC--CChh-h-HHHHHHHHHHHHHCC-C-cEEEEEECCCCHhHHHHcCCC--c
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTAS--WCGP-C-QRIAPVFEQLSRKYP-N-AAFFKVDVDQNQDLAAAQGVS--A 74 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~--wC~~-C-~~~~p~l~~l~~~~~-~-v~~~~vd~d~~~~l~~~~~v~--~ 74 (278)
+.+|++.+.++..=.. ++.-+|-|.-. .|.. + ..+...|.++|++|+ + +.|+++|.+....+.+.||+. .
T Consensus 4 ~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 4 IIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred eEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 6788887777765433 24555555432 2332 3 367788999999997 5 899999999999999999995 4
Q ss_pred ccEEEEEeCC--C-------CCHhHHHHHHHHHhcCCC
Q psy543 75 MPTFIFFRNK--I-------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 75 ~Pt~~~~~~g--~-------~~~~~l~~~i~~~~~~~~ 103 (278)
+|+++++... + .+.+.+.++++.++....
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999988643 3 477899999999887654
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.12 E-value=0.0073 Score=48.71 Aligned_cols=41 Identities=27% Similarity=0.520 Sum_probs=34.5
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHC--C-CcEEEEEEC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--P-NAAFFKVDV 60 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~-~v~~~~vd~ 60 (278)
..+++|+.|+..-|++|+.+.+.+.++.+++ + ++.|...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3478999999999999999999999999988 4 688877765
No 188
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.12 E-value=0.0035 Score=46.97 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=43.9
Q ss_pred hHHHHHHhccCCCeEEEEEE----cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHH----HHcCCCcccEEEE
Q psy543 10 AHFHTEMNNCGTKLVVVDFT----ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA----AAQGVSAMPTFIF 80 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~ 80 (278)
+..++.+++ ..|+|+-. ++||++|++....|.++ ++.+..+|++.++.+. +..+...+|.+++
T Consensus 3 ~~v~~~i~~---~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 3 ERIKEQIKE---NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHHhcc---CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 445566643 35555443 28999999999999876 5778888998776543 4456778898753
No 189
>KOG2603|consensus
Probab=97.00 E-value=0.0054 Score=54.76 Aligned_cols=97 Identities=16% Similarity=0.300 Sum_probs=74.6
Q ss_pred eEEecChhHHHHHHhc-cCCCeEEEEEEcC----CChhhHHHHHHHHHHHHHCC---------CcEEEEEECCCCHhHHH
Q psy543 3 IIVINSDAHFHTEMNN-CGTKLVVVDFTAS----WCGPCQRIAPVFEQLSRKYP---------NAAFFKVDVDQNQDLAA 68 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~-~~~k~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~---------~v~~~~vd~d~~~~l~~ 68 (278)
|+.+ +++.|..++.. ..+-.+++.|.|. .|.-|+.....+.-++..+. ++-|..||.++.|++.+
T Consensus 42 VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 42 VIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred eEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 4555 56778888763 3446677788774 69999999999999988652 46799999999999999
Q ss_pred HcCCCcccEEEEEeCCC---------------CCHhHHHHHHHHHhc
Q psy543 69 AQGVSAMPTFIFFRNKI---------------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 69 ~~~v~~~Pt~~~~~~g~---------------~~~~~l~~~i~~~~~ 100 (278)
.+++..+|++++|...+ ...+++.+++++...
T Consensus 121 ~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999999999995433 345666666666554
No 190
>PRK10638 glutaredoxin 3; Provisional
Probab=96.99 E-value=0.0029 Score=45.71 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=40.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhH----HHHcCCCcccEEEEEeCCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL----AAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~ 85 (278)
++.|..+||++|++....|++. ++.+..+|++..++. .+..+...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 4568889999999999998865 677788888877643 44457788998743 454
No 191
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0028 Score=45.73 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=39.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-----hHHHHc-CCCcccEEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-----DLAAAQ-GVSAMPTFIF 80 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-----~l~~~~-~v~~~Pt~~~ 80 (278)
++.|..+|||+|++....|.+. ++.+..++++..+ +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678899999999999998844 6777777777665 334444 7899999876
No 192
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.95 E-value=0.0031 Score=45.72 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=43.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEEC--CCC------------------------------HhHHHHcC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDV--DQN------------------------------QDLAAAQG 71 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~--d~~------------------------------~~l~~~~~ 71 (278)
+..|+.++|++|..+.+.+.++....+ ++.+....+ ... ...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999975554 565555543 211 23567789
Q ss_pred CCcccEEEEEe
Q psy543 72 VSAMPTFIFFR 82 (278)
Q Consensus 72 v~~~Pt~~~~~ 82 (278)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998864
No 193
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.93 E-value=0.0025 Score=50.80 Aligned_cols=41 Identities=24% Similarity=0.560 Sum_probs=35.4
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEEC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~ 60 (278)
..++.|+.|+.++|++|+.+.|.+.++..+++++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 35789999999999999999999999988888777776655
No 194
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.92 E-value=0.0071 Score=44.50 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=43.9
Q ss_pred CeEEEEEEc----CCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhH----HHHcCCCcccEEEEEeCCC--CCHhHH
Q psy543 22 KLVVVDFTA----SWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL----AAAQGVSAMPTFIFFRNKI--PDPNTL 91 (278)
Q Consensus 22 k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~--~~~~~l 91 (278)
.+|+|+-.. +||++|+.....|++. ++.+..+|++.++++ .+..+...+|.++ .+|+ -..+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~iGG~~~l 80 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELVGGCDIV 80 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEEeCHHHH
Confidence 456554332 7999999999999876 477888888777654 3445778899973 3554 344444
Q ss_pred HH
Q psy543 92 EA 93 (278)
Q Consensus 92 ~~ 93 (278)
.+
T Consensus 81 ~~ 82 (90)
T cd03028 81 KE 82 (90)
T ss_pred HH
Confidence 44
No 195
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.78 E-value=0.0078 Score=53.05 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHH
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRK 49 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~ 49 (278)
.++.+|+.|.-+.|++|+++.+.+.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 457889999999999999999998887654
No 196
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.57 E-value=0.034 Score=42.66 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=65.2
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHH---CC-CcEEEEEECCCCHhHHHHcCCCc--ccEEEEE
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRK---YP-NAAFFKVDVDQNQDLAAAQGVSA--MPTFIFF 81 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~---~~-~v~~~~vd~d~~~~l~~~~~v~~--~Pt~~~~ 81 (278)
+.++.+.+... +.+..+.|+ .-..-..+...+.+++++ ++ ++.|+.+|.+.....++.||+.. +|.+.+.
T Consensus 5 t~e~~~~~~~~--~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~ 80 (111)
T cd03072 5 TFENAEELTEE--GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAID 80 (111)
T ss_pred ccccHHHHhcC--CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEE
Confidence 44556655532 245555555 223346788899999999 87 69999999999888999999997 8999887
Q ss_pred eC-C--C-------CCHhHHHHHHHHHhc
Q psy543 82 RN-K--I-------PDPNTLEAKIKQYYG 100 (278)
Q Consensus 82 ~~-g--~-------~~~~~l~~~i~~~~~ 100 (278)
.. + + .+.+.|.++++.++.
T Consensus 81 ~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 81 SFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 63 2 1 466788888887764
No 197
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.54 E-value=0.004 Score=47.46 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=56.4
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChh---hHHHHHHHHHHHHHCCC-cEEEEEECCCCHhHHHHcCCCcccEE
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGP---CQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTF 78 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~---C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~ 78 (278)
+..+ +.++++.++... ...+ .|++..|.. |....=++-+|.+.+++ +..+.++-+....+..+|++...|++
T Consensus 11 ~~~v-d~~~ld~~l~~~--~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 11 WPRV-DADTLDAFLAAP--GDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp EEEE--CCCHHHHHHCC--SCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred Ceee-chhhHHHHHhCC--CcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 3445 357788888653 3444 466655544 44555588899998984 66777787778899999999999999
Q ss_pred EEEeCCC
Q psy543 79 IFFRNKI 85 (278)
Q Consensus 79 ~~~~~g~ 85 (278)
+|+++|+
T Consensus 87 vf~R~g~ 93 (107)
T PF07449_consen 87 VFFRDGR 93 (107)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 9999985
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=96.53 E-value=0.01 Score=45.90 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=41.0
Q ss_pred hhHHHHHHhccCCCeEEEEEEc----CCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHH----cCCCcccEEEE
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTA----SWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA----QGVSAMPTFIF 80 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~Pt~~~ 80 (278)
.+.+++.+++ .+|+|+-.. ||||+|++....|..+ ++.+..+|++.++++... -+-..+|.+.+
T Consensus 5 ~~~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 5 IEKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 3456666754 355554332 6999999999999887 455566777777654433 34556666554
No 199
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.04 E-value=0.064 Score=41.16 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCc----ccEEEEEeC-C-C------C-CHhHHHHHHH
Q psy543 32 WCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSA----MPTFIFFRN-K-I------P-DPNTLEAKIK 96 (278)
Q Consensus 32 wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~----~Pt~~~~~~-g-~------~-~~~~l~~~i~ 96 (278)
.-..-..+...+.++|++++ ++.|+.+|.++.....+.||+.. +|++.+... + + . +.+.|.++++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33445678899999999998 69999999999888899999984 999998863 3 2 3 5566776666
Q ss_pred HH
Q psy543 97 QY 98 (278)
Q Consensus 97 ~~ 98 (278)
.+
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 54
No 200
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=95.96 E-value=0.11 Score=41.06 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=54.1
Q ss_pred EEeeecCceeEEEEEEec--C----CCCCCceEEEEEcCCCCc--------CCCcccCCCCceeEEeecCCCCCeeEecc
Q psy543 158 LSFTFNQSVKIHSLKIKA--P----KDKGPKTLKLFINQPKTL--------DFDAATSNQSVQQIELTEKDLDGTPINLR 223 (278)
Q Consensus 158 i~ipF~~~vk~~si~i~~--~----~~~~P~~ik~f~N~~~~~--------~F~~~~~~~~~q~~~l~~~~~~~~~~~l~ 223 (278)
+-|-+.++|.+.++.|.- . -.++||.+.+|.-... . .|.=..+..+.|+|.|....
T Consensus 34 ~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~-~~~~~~~LG~f~y~~~~~~~QtF~l~~~~--------- 103 (135)
T PF07738_consen 34 LTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDY-PDEEWVLLGEFEYDSDGNSIQTFPLPRPP--------- 103 (135)
T ss_dssp EEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSS-STS--EEEEEEE--TTS-SEEEEE-SS-----------
T ss_pred EEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecc-cccceeeeceEEEcCCcCccEeeeeccCc---------
Confidence 456689999999999983 2 3489999999976543 2 22212233556777765432
Q ss_pred cccccCccEEEEEEecCCCCCceEEEEEEEEEee
Q psy543 224 YVKFQNVQNLQIFVLDNQTEAETTVITHLALIGS 257 (278)
Q Consensus 224 ~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~ 257 (278)
=+-++.|.|-|.+|+|..+-|-||++.+.|+
T Consensus 104 ---~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 104 ---RQPVRYIKLRILSNHGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp ---S--EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred ---hhcCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence 1156778888999998777999999999997
No 201
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.94 E-value=0.02 Score=54.11 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=40.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHH---HH---------cCCCcccEEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA---AA---------QGVSAMPTFIF 80 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~---~~---------~~v~~~Pt~~~ 80 (278)
|+.|..+||++|++.+..|.+. ++.+..+|+++.+... ++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5679999999999999988875 7888899998776422 22 36789999865
No 202
>PTZ00062 glutaredoxin; Provisional
Probab=95.71 E-value=0.054 Score=46.21 Aligned_cols=45 Identities=9% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHH----cCCCcccEEEE
Q psy543 31 SWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA----QGVSAMPTFIF 80 (278)
Q Consensus 31 ~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~Pt~~~ 80 (278)
|||+.|+++...|++. ++.+..+|+++.+++.+. -+...+|.+++
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 7999999999988865 677888899887665433 35566777664
No 203
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.13 Score=41.95 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.8
Q ss_pred HhccCCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 16 MNNCGTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 16 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
|..-.+++|||+|| ..|++.|-...-.|+....++. ++.++-|..|.
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 34456789999999 5799999999999999888876 67888787654
No 204
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=95.53 E-value=0.27 Score=39.33 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=77.7
Q ss_pred ccccccccC-cceEEccCCcceEEEeeecCceeEEEEEEec-C-CC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEe
Q psy543 136 PFTNCLNTA-ETYLESDADEQLILSFTFNQSVKIHSLKIKA-P-KD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIEL 210 (278)
Q Consensus 136 ~~~~~l~~~-~~~l~Sd~D~qLii~ipF~~~vk~~si~i~~-~-~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l 210 (278)
.+.++++.+ +.|=+||.-..=.|.|-|...+.++.+.|.- . .| ..|++|.+++=.. + .++....+.++
T Consensus 19 gv~~L~D~~~~TyWQSDg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~----~---~dl~e~~~v~l 91 (139)
T cd08366 19 GVDQLRDDSLDTYWQSDGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTS----P---HDLQEVRTVEL 91 (139)
T ss_pred CHHHhcCCCCCccCCCCCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECC----c---CchhheEEEEc
Confidence 445555443 4466888654455689999999999999972 2 23 8999999987542 2 23344456666
Q ss_pred ecCCCCCeeEeccc---ccccCccEEEEEEecCCCCCceEEEEEEEEEe
Q psy543 211 TEKDLDGTPINLRY---VKFQNVQNLQIFVLDNQTEAETTVITHLALIG 256 (278)
Q Consensus 211 ~~~~~~~~~~~l~~---~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G 256 (278)
.+.. +-.-++|.- -+.....-|.|-|..|+.++.-|+|..|.++|
T Consensus 92 ~~p~-Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g 139 (139)
T cd08366 92 EEPN-GWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139 (139)
T ss_pred CCCC-EEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence 5431 223455554 25566778999999999878889999999887
No 205
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.13 E-value=0.62 Score=36.28 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=58.8
Q ss_pred ChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHH-H---HCCCcEEEEEECCC-----CHhHHHHcCC--Cccc
Q psy543 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLS-R---KYPNAAFFKVDVDQ-----NQDLAAAQGV--SAMP 76 (278)
Q Consensus 8 s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~-~---~~~~v~~~~vd~d~-----~~~l~~~~~v--~~~P 76 (278)
+.-+|+.++... +.+||.|=... |--.-...+.+++ + .-+++-++.|-+.+ |.+++++|++ ..+|
T Consensus 10 D~~tFdKvi~kf--~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 10 DELTFDKVIPKF--KYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp STTHHHHHGGGS--SEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred cceehhheeccC--ceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 346799999765 89999996542 1223334566666 3 23489999998854 6789999999 5689
Q ss_pred EEEEEeCCC-----------CCHhHHHHHHHHH
Q psy543 77 TFIFFRNKI-----------PDPNTLEAKIKQY 98 (278)
Q Consensus 77 t~~~~~~g~-----------~~~~~l~~~i~~~ 98 (278)
.+++|..|. .+.+.|++++++.
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 999998555 4567777777765
No 206
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=95.13 E-value=0.35 Score=38.21 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=73.1
Q ss_pred cccccccC-cceEEccCCc-ceEEEeeecCceeEEEEEEec-CCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEee
Q psy543 137 FTNCLNTA-ETYLESDADE-QLILSFTFNQSVKIHSLKIKA-PKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIELT 211 (278)
Q Consensus 137 ~~~~l~~~-~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~~-~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l~ 211 (278)
+.++++.+ +.|=+||... .=.|.+-|..-|.|+.+.|.- +.| ..|+.|.+++=- +|.++. ...++++.
T Consensus 16 v~~L~D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~----~~~dL~---e~~~v~l~ 88 (131)
T cd08667 16 IDRMTDGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGR----SASSLQ---EVRDVHIP 88 (131)
T ss_pred hHHhhcCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecC----CHhhhe---eeEEEEcC
Confidence 44555543 4578998652 346689999999999999973 333 899999999732 223333 34456664
Q ss_pred cCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEEEe
Q psy543 212 EKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIG 256 (278)
Q Consensus 212 ~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G 256 (278)
+...+-..+..+ .-....-|.|.|..|+.++--|+|.-|.++|
T Consensus 89 ~~~~Gwv~l~~~--~~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 89 SNVTGYVTLLEN--ANISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred CCCceeEEEEcC--CceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 211011223222 2244566899999999888889999999987
No 207
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.89 E-value=0.33 Score=36.48 Aligned_cols=79 Identities=11% Similarity=0.221 Sum_probs=58.2
Q ss_pred EEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCC--CHhHHHHcCCC----ccc
Q psy543 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQ--NQDLAAAQGVS----AMP 76 (278)
Q Consensus 4 ~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~v~----~~P 76 (278)
..|.+..+|..++... +-|+|.|..+ -..-......+.++|+... .-.++.|||.. ...+|+++.|. --|
T Consensus 4 e~i~d~KdfKKLLRTr--~NVLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLRTR--NNVLVLYSKS-AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHhhc--CcEEEEEecc-hhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 4677888999998654 4566655554 3444455558888888887 47889999987 57899999998 556
Q ss_pred E-EEEEeCCC
Q psy543 77 T-FIFFRNKI 85 (278)
Q Consensus 77 t-~~~~~~g~ 85 (278)
. +.-|++|.
T Consensus 81 ~~LkHYKdG~ 90 (112)
T cd03067 81 VELKHYKDGD 90 (112)
T ss_pred chhhcccCCC
Confidence 4 66788887
No 208
>KOG1752|consensus
Probab=94.82 E-value=0.15 Score=38.74 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=40.3
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-hHH----HHcCCCcccEEEE
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-DLA----AAQGVSAMPTFIF 80 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-~l~----~~~~v~~~Pt~~~ 80 (278)
+.++..++. .+| |.|..+||+.|+++...|..+ -....++.+|-..+. ++. +--+-+.+|.+++
T Consensus 5 ~~v~~~i~~---~~V-VifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 5 AKVRKMISE---NPV-VIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHHhhc---CCE-EEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 345666643 344 459999999999988888772 114566666665543 332 2234568888765
No 209
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.31 Score=39.31 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=84.4
Q ss_pred cccccCCCCCcccccccccC-cceEEccCCcceEEEeeecCceeEEEEEEe----cCCCCCCceEEEEEcCCCCcCCCcc
Q psy543 125 QCEALNESDQHPFTNCLNTA-ETYLESDADEQLILSFTFNQSVKIHSLKIK----APKDKGPKTLKLFINQPKTLDFDAA 199 (278)
Q Consensus 125 ~~~~LNe~~~~~~~~~l~~~-~~~l~Sd~D~qLii~ipF~~~vk~~si~i~----~~~~~~P~~ik~f~N~~~~~~F~~~ 199 (278)
...|-.....+|++.+++++ +.|-+||...---++|-|...+.|+++.+. .++..+|++|+++.- +.|+|+
T Consensus 31 ~w~~SSfK~g~p~r~~lddn~dtyWqsDg~qPH~i~I~F~kr~~I~~v~lfls~t~DeSYtPs~i~v~aG----~~~~D~ 106 (189)
T COG5156 31 EWRLSSFKRGHPLRELLDDNMDTYWQSDGVQPHSIQISFDKRRYIQSVQLFLSFTQDESYTPSKIGVRAG----LTREDV 106 (189)
T ss_pred eeeecccccCCcHHHHhhcchhhhhccCCCCCceEEEEEeEEEeeeeehhhhhhhcccccCcceeEEecc----CChhhh
Confidence 33454555666777777765 557788877666679999999999999886 244489999999964 567777
Q ss_pred cCCCCceeEEeecCCCCCeeEecccccc-----cCccEEEEEEecCCCCCceEEEEEEEEEee
Q psy543 200 TSNQSVQQIELTEKDLDGTPINLRYVKF-----QNVQNLQIFVLDNQTEAETTVITHLALIGS 257 (278)
Q Consensus 200 ~~~~~~q~~~l~~~~~~~~~~~l~~~kf-----~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~ 257 (278)
+... ++++.+.. .-+.|++..| -.+.-+-+-|..|+-.+.-+.+.-|.++-.
T Consensus 107 r~~~---~vev~ep~---Gwv~l~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~ikiy~p 163 (189)
T COG5156 107 REIS---SVEVVEPE---GWVTLSVADKREDDLLKCIYILVVINSNHQEGKDSHVRHIKIYEP 163 (189)
T ss_pred eeEE---EEEEEcCC---ceEEEEecccCcCCceeEEEEEEEEecCcccCcccceeeEEEecc
Confidence 6543 44443221 1355666655 235667777888886666788888887754
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.68 E-value=0.061 Score=44.03 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=34.7
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEEC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDV 60 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~ 60 (278)
.+++.|+.|+...|++|+.+.+.+.++.++++ ++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 45899999999999999999999999999887 566655554
No 211
>KOG3437|consensus
Probab=94.55 E-value=0.92 Score=37.42 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=86.2
Q ss_pred cccCCCCCcccccccccC-cceEEccCCcceEEEeeecCceeEEEEEEec----CCCCCCceEEEEEcCCCCcCCCcccC
Q psy543 127 EALNESDQHPFTNCLNTA-ETYLESDADEQLILSFTFNQSVKIHSLKIKA----PKDKGPKTLKLFINQPKTLDFDAATS 201 (278)
Q Consensus 127 ~~LNe~~~~~~~~~l~~~-~~~l~Sd~D~qLii~ipF~~~vk~~si~i~~----~~~~~P~~ik~f~N~~~~~~F~~~~~ 201 (278)
..+..+...++.++++.+ +.|-+||...--.+.|-|...|+|..+.|.. ++..+|++|||..- -+|.|+
T Consensus 29 A~ws~sSg~pvd~l~Ddn~etyWqSdG~~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~G----~g~~dl-- 102 (184)
T KOG3437|consen 29 ALWSLSSGFPVDNLRDDNPETYWQSDGSQPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRAG----NGFNDL-- 102 (184)
T ss_pred hhcccccCCChHHhhcCChhHheecCCCCCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEec----CChhhe--
Confidence 334444455677777654 4567888664444589999999999999984 34489999998753 345554
Q ss_pred CCCceeEEeecCCCCCeeEe--cccccccCccEEEEEEecCCCCCceEEEEEEEEEeeec
Q psy543 202 NQSVQQIELTEKDLDGTPIN--LRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPI 259 (278)
Q Consensus 202 ~~~~q~~~l~~~~~~~~~~~--l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~~~ 259 (278)
.-.|..++.+.. +=.-++ ....+--.+..|.|-|..|+-.+.-|.+..|.+.+-.+
T Consensus 103 -~~~~~~el~ep~-GWv~lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~~ 160 (184)
T KOG3437|consen 103 -WEIQSVELVEPK-GWVHLPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPSI 160 (184)
T ss_pred -eeeeEEEEecCC-ceEEEeeccCCCCceEEEEEEEEeecccccCccceeEEEEEecccc
Confidence 446788886542 113333 23355566778888899998766779999999998744
No 212
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.49 E-value=0.16 Score=35.73 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 24 VVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 24 vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
.+..|-+..-+..++....+.++.+++. ...+-.||+.++|+++..++|.++||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4555666666889999999999998874 688899999999999999999999997643
No 213
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.15 E-value=1.1 Score=33.44 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=51.6
Q ss_pred ceEEecChhHHHHHHh-ccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC-CCcEEEEEECCCCHhHHHHcCCCcccEEE
Q psy543 2 SIIVINSDAHFHTEMN-NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (278)
+++.|++.++++.++. .. ..++|-|+..--+ .....+.++|..+ .++.|+. ...+.++..+++. .|+++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~~-~~~i~ 71 (102)
T cd03066 1 PVEIINSERELQAFENIED--DIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDSKVAKKLGLK-MNEVD 71 (102)
T ss_pred CceEcCCHHHHHHHhcccC--CeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcHHHHHHcCCC-CCcEE
Confidence 5788999999999995 43 5666666665444 4556788888888 4777743 3345667777765 68888
Q ss_pred EEeC
Q psy543 80 FFRN 83 (278)
Q Consensus 80 ~~~~ 83 (278)
++++
T Consensus 72 l~~~ 75 (102)
T cd03066 72 FYEP 75 (102)
T ss_pred EeCC
Confidence 8865
No 214
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.56 E-value=1.1 Score=33.67 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=51.5
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
++++|++.+++++++.. .+.++|-|+..--. .....+.+++..+. +..|.... ...+++.+++ .|++++
T Consensus 1 ~~~~i~s~~~l~~f~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl 70 (104)
T cd03069 1 ASVELRTEAEFEKFLSD--DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVL 70 (104)
T ss_pred CccccCCHHHHHHHhcc--CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEE
Confidence 46788899999998863 36777777766444 46677888888884 78775433 3567788888 788888
Q ss_pred EeC
Q psy543 81 FRN 83 (278)
Q Consensus 81 ~~~ 83 (278)
|+.
T Consensus 71 ~~p 73 (104)
T cd03069 71 FRP 73 (104)
T ss_pred Eec
Confidence 843
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.48 E-value=1.6 Score=32.40 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=44.4
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
.+++...++.-.+...++.|..+. ..|..+...++++++--+.+.+...+... ..|++.+..+|
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~ 70 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC
Confidence 456666666555445555555555 99999999999999987777665433321 47999998775
No 216
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=93.47 E-value=2.3 Score=33.64 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=71.6
Q ss_pred ccccccccC-cceEEccCCc-ceEEEeeecCceeEEEEEEec-CCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEe
Q psy543 136 PFTNCLNTA-ETYLESDADE-QLILSFTFNQSVKIHSLKIKA-PKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIEL 210 (278)
Q Consensus 136 ~~~~~l~~~-~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~~-~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l 210 (278)
.+.++.+.+ +.|=+||... .=.|.+-|..-|.|+.+.|.- +.| ..|++|.+..=- +|.++. +...+.++
T Consensus 15 ~~~~L~D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~----~~~dL~--~e~~~V~~ 88 (131)
T cd08665 15 RANKLTDGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGD----SPSCIT--TELNAVNV 88 (131)
T ss_pred cHHHhhcCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecC----CHHHhh--heeEEEEc
Confidence 344555432 4588999763 556689999999999999983 333 789999998643 233322 12234444
Q ss_pred ecCCCCCeeEecccc-cccCccEEEEEEecCCCCCceEEEEEEEEEe
Q psy543 211 TEKDLDGTPINLRYV-KFQNVQNLQIFVLDNQTEAETTVITHLALIG 256 (278)
Q Consensus 211 ~~~~~~~~~~~l~~~-kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G 256 (278)
.+. .|-...|.-. .|- .-|.|.|..|+.++--|+|.-|.++|
T Consensus 89 ~~~--~g~v~ll~~~~~~~--~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 89 SPT--ASRVVLLENMTRFW--PIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred cCC--cceEEEcccCcccc--eEEEEEEhhhcccCccceeeEEEecC
Confidence 432 2211122111 111 46899999999888889999999987
No 217
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=93.21 E-value=1.4 Score=34.75 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred cccccccc-CcceEEccCC-cceEEEeeecCceeEEEEEEe-cCCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEe
Q psy543 136 PFTNCLNT-AETYLESDAD-EQLILSFTFNQSVKIHSLKIK-APKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIEL 210 (278)
Q Consensus 136 ~~~~~l~~-~~~~l~Sd~D-~qLii~ipF~~~vk~~si~i~-~~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l 210 (278)
++.++++. .+.|=+||.. ++..+.+-|...|.++.+.|. ...| ..|++|.+++=- +|.|+ ....++++
T Consensus 15 gv~~L~D~~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~----~~~dL---~e~~~v~l 87 (129)
T cd08159 15 PVSRLTDGNYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGH----SPSDL---RELKDVNI 87 (129)
T ss_pred cHHHhcCCCCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecC----CHHHh---heeEEEEe
Confidence 34455544 2457788854 456778889999999999998 3333 899999999643 34443 33456666
Q ss_pred ecCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEEE
Q psy543 211 TEKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALI 255 (278)
Q Consensus 211 ~~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~ 255 (278)
.+.. + -+.+..-......-|.|-|..|+.++--|+|.-|.++
T Consensus 88 ~~p~-G--wv~i~~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 88 RPSN-G--WVALLEDDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred cCCC-c--eEEEEcCCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 5432 2 2233222234456689999999987888999988763
No 218
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.08 E-value=0.32 Score=36.65 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 21 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
+..++=.|.|..-+..++....+.++.+.+- ...+-.||+.++|.++..++|.++||++-.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~ 67 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI 67 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence 4677888889999999999999999988764 488889999999999999999999997644
No 219
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.03 E-value=0.21 Score=40.47 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCChhhHHH-HHHHHHHHHHCC--Cc-EEEEEECCCCH---hHHHHcCC
Q psy543 22 KLVVVDFTASWCGPCQRI-APVFEQLSRKYP--NA-AFFKVDVDQNQ---DLAAAQGV 72 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~--~v-~~~~vd~d~~~---~l~~~~~v 72 (278)
..+|+.|.+.||+.|... .+.|.+.++++. ++ .++.|..+... .+++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 455555568899999998 999999888875 67 58888887754 35556665
No 220
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.99 E-value=0.36 Score=35.28 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=51.6
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEEE
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIFF 81 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 81 (278)
..++=.|.|..-+.+++....+.++.+.+- ...+-.||+.++|.+++.++|-++||++-.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 456677888889999999999999988764 488889999999999999999999997644
No 221
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.77 E-value=0.93 Score=31.82 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=42.4
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC----HhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHHHH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN----QDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIKQ 97 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~ 97 (278)
..|+.++|+.|++..-.+.+. ++.+-.++++.. +++.+..+-..+|+++.-.+|. .+...|.+.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 457778999999988777766 455555565443 2344444557899986432343 566666666654
No 222
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.77 E-value=0.47 Score=38.30 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=36.5
Q ss_pred EEEEcC------CChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh----HHHHcCC----CcccEEEE
Q psy543 26 VDFTAS------WCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD----LAAAQGV----SAMPTFIF 80 (278)
Q Consensus 26 v~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v----~~~Pt~~~ 80 (278)
+.|.++ ||++|+++...|+.+ ++.|-.+|++.+++ +.+..+- ..+|.+++
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 456666 899999999998876 68888999987754 3344444 56777654
No 223
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.70 E-value=0.16 Score=43.28 Aligned_cols=42 Identities=21% Similarity=0.543 Sum_probs=35.3
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVD 61 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d 61 (278)
.+++-|+.|+.-.|++|..+.+.+ ..+.+.++ ++.++++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 357889999999999999999976 78888887 7888877664
No 224
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.55 Score=46.55 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=55.5
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHH---HHHHHHCC-CcEEEEEECCCCHhHHHHcC--------CCccc
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVF---EQLSRKYP-NAAFFKVDVDQNQDLAAAQG--------VSAMP 76 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~~--------v~~~P 76 (278)
.+.|+..- ..+||++|-...+||.-|+.|...= .++++-+. +..-++||-++-|++-+.|. --+.|
T Consensus 33 ~eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 33 EEAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred HHHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 45666654 3569999999999999999998642 45555544 68888999999998777664 45789
Q ss_pred EEEEEe-CCC
Q psy543 77 TFIFFR-NKI 85 (278)
Q Consensus 77 t~~~~~-~g~ 85 (278)
-.+|.. +|+
T Consensus 111 LtVfLTPd~k 120 (667)
T COG1331 111 LTVFLTPDGK 120 (667)
T ss_pred eeEEECCCCc
Confidence 766664 454
No 225
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.38 E-value=1.5 Score=30.45 Aligned_cols=69 Identities=13% Similarity=0.292 Sum_probs=44.3
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC--CHhHHHHcCCCcccEEEEEe--CCC--CCHhHHHHHHHHHh
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ--NQDLAAAQGVSAMPTFIFFR--NKI--PDPNTLEAKIKQYY 99 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~--~g~--~~~~~l~~~i~~~~ 99 (278)
..|+.++|+.|++.+-.+... ++.+-.++++. .+++ +.-+...+|++..-. +|. .+...+.+.|++.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 457789999999999777665 44444444433 2333 334567899987542 244 56777777777765
Q ss_pred c
Q psy543 100 G 100 (278)
Q Consensus 100 ~ 100 (278)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 226
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=91.45 E-value=1.1 Score=37.94 Aligned_cols=117 Identities=23% Similarity=0.271 Sum_probs=72.1
Q ss_pred cccccccc--CcceEEccCCcceEEEeeecCceeEEEEEEec----CCCCCCceEEEEEcCCCCcCCCcccCCCCceeEE
Q psy543 136 PFTNCLNT--AETYLESDADEQLILSFTFNQSVKIHSLKIKA----PKDKGPKTLKLFINQPKTLDFDAATSNQSVQQIE 209 (278)
Q Consensus 136 ~~~~~l~~--~~~~l~Sd~D~qLii~ipF~~~vk~~si~i~~----~~~~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~ 209 (278)
.+.+.|.+ .+.|=+||...-=.|.|-|...+.|+.|.|.- ++...|+.|.++.=.. +.++ ....+++
T Consensus 46 gv~~~LrD~~~~TyWQSDG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~----~~dl---~e~~~v~ 118 (193)
T PF03256_consen 46 GVAELLRDGSTETYWQSDGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNS----PHDL---QEVKTVE 118 (193)
T ss_dssp SCHGHCHSS-TT--EE--SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESS----TTT----EEEEEEE
T ss_pred CchheeeCCChhHhhccCCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCC----cCce---EEEEEEE
Confidence 45556632 35688998766677899999999999999973 2338999999986432 2222 2335566
Q ss_pred eecCCCCCeeEecc--cccccCccEEEEEEecCCCCCceEEEEEEEEEeeecc
Q psy543 210 LTEKDLDGTPINLR--YVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPIL 260 (278)
Q Consensus 210 l~~~~~~~~~~~l~--~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~~~~ 260 (278)
+.+.. +-..++|. ..++-.+.-|.|.|..|+-++--|+|..|.++|-...
T Consensus 119 l~~p~-GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~ 170 (193)
T PF03256_consen 119 LEEPN-GWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPS 170 (193)
T ss_dssp ECC-E-EEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE---
T ss_pred ecCCC-ccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCc
Confidence 64421 11455554 3355566779999999988777899999999997543
No 227
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=91.14 E-value=0.91 Score=31.21 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=35.2
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC-CHhHHHHcCCCcccEEEE
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~ 80 (278)
+.|+.+||+.|++..-.+++..- ...+..+|... .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 35788999999998877776533 34445555433 345656667778999964
No 228
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.90 E-value=1.7 Score=35.46 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC----------CCHhHHHHHHHHHh
Q psy543 38 RIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI----------PDPNTLEAKIKQYY 99 (278)
Q Consensus 38 ~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~----------~~~~~l~~~i~~~~ 99 (278)
.....+.++|+.+. ++.|+.+. ++++++.+++.. |++++|+++. .+.+.|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 34567888999887 78888887 777999999999 9999999843 36788888887764
No 229
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=90.84 E-value=5.5 Score=32.25 Aligned_cols=109 Identities=16% Similarity=0.259 Sum_probs=71.9
Q ss_pred ccccccccCcceEEccCCc-ceEEEeeecCceeEEEEEEe-cCCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEee
Q psy543 136 PFTNCLNTAETYLESDADE-QLILSFTFNQSVKIHSLKIK-APKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIELT 211 (278)
Q Consensus 136 ~~~~~l~~~~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~-~~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l~ 211 (278)
.+.++++....|=+||... +=.|.+-|...|-++++.|. .+.| ..|++|.++.=- +|+++ +...++++.
T Consensus 39 ~~~~L~D~~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~----~~~~L---~el~~V~i~ 111 (152)
T cd08664 39 QAKRLIDGSGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGD----SLNSL---KELKTINVN 111 (152)
T ss_pred cHHHhcCCCCCeeccCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecC----Chhhh---heeEEEEcC
Confidence 3444444445678888654 57889999999999999998 3444 789999998642 35554 334455554
Q ss_pred cCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEE
Q psy543 212 EKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLAL 254 (278)
Q Consensus 212 ~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~ 254 (278)
+.+ ....+......| ..-|.|.|..|+.++--|+|.-|.+
T Consensus 112 ~~~-~~v~Ll~~~~~~--~~~IqI~I~~ch~~GiDt~IrglkI 151 (152)
T cd08664 112 ATD-TLVTLLQDVKEY--YRYIEIAIKQCRNNGIDCKIHGLNI 151 (152)
T ss_pred CCC-ceEEeccCCCee--eEEEEEEhHhhhhCCCcceeeEEEe
Confidence 432 111111222223 2568899999998888899998875
No 230
>KOG2687|consensus
Probab=90.78 E-value=4.5 Score=37.98 Aligned_cols=89 Identities=13% Similarity=0.307 Sum_probs=59.8
Q ss_pred EEeeecCceeEEEEEEec------CC---CCCCceEEEEEcCCC---C------cCCCcccCCCCceeEEeecCCCCCee
Q psy543 158 LSFTFNQSVKIHSLKIKA------PK---DKGPKTLKLFINQPK---T------LDFDAATSNQSVQQIELTEKDLDGTP 219 (278)
Q Consensus 158 i~ipF~~~vk~~si~i~~------~~---~~~P~~ik~f~N~~~---~------~~F~~~~~~~~~q~~~l~~~~~~~~~ 219 (278)
+.|-+.+.|.+.+|.+.- |+ .+|||...+|.=.+. . .-|| .+.++.|+|++...
T Consensus 306 v~V~La~~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD--~d~~~~QtF~~q~~------ 377 (414)
T KOG2687|consen 306 VTVRLARFIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYD--LDGSPIQTFSLQHD------ 377 (414)
T ss_pred EEEEecceEEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEEC--CCCCcceEEeccCC------
Confidence 345578899999999872 22 279999999976541 0 1121 22356666665332
Q ss_pred EecccccccCccEEEEEEecCCCCCceEEEEEEEEEeeecc
Q psy543 220 INLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPIL 260 (278)
Q Consensus 220 ~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~~~~ 260 (278)
-+.-+++|-|=|.+|+|....|=||++.+.|+++.
T Consensus 378 ------~~~~~~~V~l~~~SN~G~p~fTCiYR~RVhG~~~~ 412 (414)
T KOG2687|consen 378 ------TSAPFKTVELRFNSNHGHPKFTCIYRFRVHGRPVD 412 (414)
T ss_pred ------CccccceEEEEEecCCCCCCceEEEEEEEcCccCC
Confidence 22334556677899998666899999999998764
No 231
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=90.65 E-value=6 Score=31.28 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=70.4
Q ss_pred cccccccc-CcceEEccCCc-ceEEEeeecCceeEEEEEEec-CCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEe
Q psy543 136 PFTNCLNT-AETYLESDADE-QLILSFTFNQSVKIHSLKIKA-PKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIEL 210 (278)
Q Consensus 136 ~~~~~l~~-~~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~~-~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l 210 (278)
.+.++++. .+.|=+||... +=.|.+-|..-|.|+++.|.- +.| ..|++|++++=- +|.++. ...++++
T Consensus 16 gv~~L~D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~----~~~dL~---e~~~v~v 88 (131)
T cd08365 16 DASRLTDGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGR----SASNLQ---ELRDVNI 88 (131)
T ss_pred hHHHhhcCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecC----CHHHhe---eEEEEEc
Confidence 34455544 25588998554 467799999999999999983 333 899999999643 244433 3344555
Q ss_pred ecCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEE
Q psy543 211 TEKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLAL 254 (278)
Q Consensus 211 ~~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~ 254 (278)
.+.. .| -+.|---.-....-|.|.|..|+.++--|+|.-|.+
T Consensus 89 ~~~~-~g-~v~ll~~~~~~~~~iqI~I~~nhqnG~DthiRgikI 130 (131)
T cd08365 89 PPSV-TG-YVTLLEDATISQPYIEIRIKRCRSDGIDTRIHGLRI 130 (131)
T ss_pred cCCC-ce-eEEEccCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence 4321 11 111111111223668899999998788899998876
No 232
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.34 E-value=0.35 Score=36.35 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=26.8
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
..|+.++|+.|+.....|++. ++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEP 35 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCC
Confidence 468999999999998888774 6777777776543
No 233
>KOG2640|consensus
Probab=89.78 E-value=0.14 Score=45.88 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=62.3
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEEC-CCCHhHHHHcCCCcccEEEEEeCCC-------CCHhH
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV-DQNQDLAAAQGVSAMPTFIFFRNKI-------PDPNT 90 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~-d~~~~l~~~~~v~~~Pt~~~~~~g~-------~~~~~ 90 (278)
++..++-+.||+.||+..+...|.++-....|+.+....++- ...+.+..+|++.+.|++++....- ++...
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLAS 153 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHH
Confidence 345788899999999999999999998888887555554332 3347788999999999998875322 66677
Q ss_pred HHHHHHHHhc
Q psy543 91 LEAKIKQYYG 100 (278)
Q Consensus 91 l~~~i~~~~~ 100 (278)
|.++..+.++
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 7777766664
No 234
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=89.26 E-value=1.3 Score=33.93 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=42.3
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeC
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 83 (278)
++.+.+.+.+....-+.+.|-.---+.=+.....+.+|..+.+.. ..+.-+|.+.++|+|+.+||+++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 345555554333333444454443443344444455555544333 44445799999999999999999887
No 235
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.15 E-value=1.5 Score=38.55 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=43.5
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 83 (278)
..||+.+++..+.||+.|...+-.|--...+|.++.+...-.+. .+ .--.+||++|...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-~d-----~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-YD-----NYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-cc-----CCCCCCeEEEecC
Confidence 45799999999999999999998888888889877443333332 11 2357899988754
No 236
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=88.89 E-value=10 Score=30.08 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=71.3
Q ss_pred ccccccccC-cceEEccCCc-ceEEEeeecCceeEEEEEEec-CCC--CCCceEEEEEcCCCCcCCCcccCCCCceeEEe
Q psy543 136 PFTNCLNTA-ETYLESDADE-QLILSFTFNQSVKIHSLKIKA-PKD--KGPKTLKLFINQPKTLDFDAATSNQSVQQIEL 210 (278)
Q Consensus 136 ~~~~~l~~~-~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~~-~~~--~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l 210 (278)
.+.++++.+ +.|=+||-.. +=.|.+-|..-|.|+.+.|.- +.| ..|++|.++.=- |.+ ++...++++
T Consensus 20 gv~~L~D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~-----~~d---L~ei~~V~i 91 (134)
T cd08666 20 NVSCLTDGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE-----GDN---LKKLNDVSI 91 (134)
T ss_pred CHHHhccCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC-----ccC---hhheEEEEe
Confidence 344555443 4588998655 577899999999999999983 333 889999999643 333 334455666
Q ss_pred ecCCCCCeeEecccccccCccEEEEEEecCCCCCceEEEEEEEEE
Q psy543 211 TEKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALI 255 (278)
Q Consensus 211 ~~~~~~~~~~~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~ 255 (278)
.+...+-..+ |+-.. ....-|.|.|..|+.++--|+|..|.++
T Consensus 92 ~~~~~g~V~i-l~~~~-~~~~~iqI~I~~nhqnG~DthIRgiKI~ 134 (134)
T cd08666 92 DETLIGDVCI-LEDMT-THLPVIEIRIKECKDEGIDVRIRGIKIK 134 (134)
T ss_pred CCCCCCeEEE-ecCCc-eEeEEEEEEeHHhccCCccceeeEEEeC
Confidence 5432111222 21111 1112488999999987888999998863
No 237
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.43 E-value=4 Score=39.66 Aligned_cols=82 Identities=10% Similarity=0.126 Sum_probs=59.2
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC---
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--- 85 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--- 85 (278)
.+++..++.+-. ++|-+.++.+.|..|..+...++++++--+++.+...+.. ...|++.+.++|.
T Consensus 7 ~~~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELLE-RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhCC-CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccce
Confidence 456666776555 5565666666899999999999999998777776443211 3479999887764
Q ss_pred ------CCHhHHHHHHHHHhcCC
Q psy543 86 ------PDPNTLEAKIKQYYGVG 102 (278)
Q Consensus 86 ------~~~~~l~~~i~~~~~~~ 102 (278)
+...++..+|..++..+
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~ 97 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVG 97 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhc
Confidence 67788888888776544
No 238
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.85 E-value=7.1 Score=27.01 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=49.5
Q ss_pred EEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC-CHhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHHHHHhcC
Q psy543 28 FTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 28 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~~~~~ 101 (278)
++.++|+.|++..=.++...- ...+..++..+ .+.+.+...-..+|++. .+|. .+...+.+.|.+..+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEESHHHHHHHHHHHSTS
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEeCHHHHHHHHHHHcCC
Confidence 678999999998877766532 34455555544 35666677778899997 4566 7788888888887654
No 239
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=87.25 E-value=5.2 Score=27.17 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=39.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-HhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHHH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-QDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIK 96 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~ 96 (278)
..|+.++|+.|++..-.++...-. .....+|.... +++.+......+|++. .+|. .+...+.+.|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLYESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEEcHHHHHHHHH
Confidence 357789999999998877665332 23333444332 4555555667899774 3433 44555555554
No 240
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.24 E-value=1.2 Score=35.04 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=27.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
+..|+.+||+.|+.....|++- ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4578899999999988777655 6777788877665
No 241
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=87.21 E-value=2.1 Score=29.22 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=35.9
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC--CCHhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD--QNQDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
.++.++|+.|++.+-.+... ++.+-.+.++ ......+..+-..+|++.. .+|. .+...+.+.|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMAESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEeehHHHHHHHH
Confidence 46788999999888777665 3444333333 2222333444567898753 3354 4444444444
No 242
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=3.6 Score=38.12 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=67.4
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEE----EeCCC
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF----FRNKI 85 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~----~~~g~ 85 (278)
+++-+.++...+..-+=-|++-.|..|-.....|+-.+--.|++.-..||-.-..+-.+.-+|.++||+++ |..|+
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvflnGe~fg~GR 184 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFLNGEEFGQGR 184 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEEcchhhcccc
Confidence 34444555666677777888999999999999999888888899999999877766666679999999876 33444
Q ss_pred CCHhHHHHHHHH
Q psy543 86 PDPNTLEAKIKQ 97 (278)
Q Consensus 86 ~~~~~l~~~i~~ 97 (278)
++.+++.+.|..
T Consensus 185 mtleeilaki~~ 196 (520)
T COG3634 185 MTLEEILAKIDT 196 (520)
T ss_pred eeHHHHHHHhcC
Confidence 666666666654
No 243
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.82 E-value=0.97 Score=34.20 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
..|+.+||+.|+.....|++- ++.+-.+|+.+.|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 568999999999998887765 6777777766554
No 244
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=86.40 E-value=1.1 Score=34.19 Aligned_cols=34 Identities=9% Similarity=0.339 Sum_probs=27.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
..|+.++|+.|+.....|++- ++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCc
Confidence 468899999999999888764 6788888877654
No 245
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.23 E-value=1.5 Score=33.71 Aligned_cols=35 Identities=11% Similarity=0.316 Sum_probs=28.3
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD 65 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~ 65 (278)
..|+.++|+.|+.....|++- ++.+..+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChh
Confidence 468999999999999888773 77888888877653
No 246
>PHA03075 glutaredoxin-like protein; Provisional
Probab=85.98 E-value=1.2 Score=34.18 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=26.9
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCC
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP 51 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 51 (278)
|.+++.|.-|-|+.|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999988774
No 247
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=85.95 E-value=0.3 Score=35.38 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=44.0
Q ss_pred EEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 28 FTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 28 F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
|-+..-+..+++...++.+.+.+- .+.+-.||+.++|+++..++|-++||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 445555667788888999888653 68999999999999999999999999873
No 248
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=85.77 E-value=9.2 Score=28.84 Aligned_cols=74 Identities=5% Similarity=0.125 Sum_probs=50.9
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC-CCcEEEEEECCCCHhHHHHcCCCcccEEEE
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (278)
|++.|++.++++.++.... +.+||-|+..--+ .....+.++|..+ .++.|+... ...+.+++++. .|.+++
T Consensus 1 ~v~~i~s~~ele~f~~~~~-~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl 72 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGD-DVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVV 72 (107)
T ss_pred CceEcCCHHHHHHHHhcCC-CEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEE
Confidence 5788999999999885432 4566666655433 4566788888888 478885433 34677788775 567777
Q ss_pred EeC
Q psy543 81 FRN 83 (278)
Q Consensus 81 ~~~ 83 (278)
|+.
T Consensus 73 ~rp 75 (107)
T cd03068 73 FQP 75 (107)
T ss_pred ECc
Confidence 765
No 249
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.62 E-value=9.5 Score=37.09 Aligned_cols=84 Identities=12% Similarity=0.217 Sum_probs=58.9
Q ss_pred hhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC---
Q psy543 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--- 85 (278)
Q Consensus 9 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--- 85 (278)
.+++...+.+-. ++|-+.++...|..|..+...++++++.-+++.+...+.+. ...|++.+.++|.
T Consensus 7 ~~~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASLE-NPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhcC-CCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccc
Confidence 456666666555 45555555557999999999999999987777775444221 3469998887765
Q ss_pred ------CCHhHHHHHHHHHhcCCC
Q psy543 86 ------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 86 ------~~~~~l~~~i~~~~~~~~ 103 (278)
+...++..+|..++..+.
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~~ 99 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVGG 99 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhcC
Confidence 667788888877665543
No 250
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=84.60 E-value=3.1 Score=28.23 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=34.6
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC----CCHhHHHHcCCCcccEEEE
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD----QNQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~~ 80 (278)
..|+.++|+.|++..-.+....-. .....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999999887776332 333445432 2345666666778999975
No 251
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=2.9 Score=29.62 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC--------------H--hHHHHcCCCcccEEEEEe
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN--------------Q--DLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~--------------~--~l~~~~~v~~~Pt~~~~~ 82 (278)
++ +.|++.-||.|..+...|+++ ++.+-.|++... + +-.+.+|--++|.+++-.
T Consensus 3 kp--~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d 72 (85)
T COG4545 3 KP--KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD 72 (85)
T ss_pred Cc--eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC
Confidence 55 579999999999888888777 344455555432 2 224567788899987643
No 252
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=82.94 E-value=2.1 Score=37.07 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=39.4
Q ss_pred HHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHC-----CCcEEEEEECCC
Q psy543 15 EMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-----PNAAFFKVDVDQ 62 (278)
Q Consensus 15 ~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~d~ 62 (278)
.+++..|.++||-+-..+|..|...+..|+.|..++ ++|.|+.||--.
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 455667899999999999999999999998887544 489999998643
No 253
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=82.70 E-value=2.2 Score=27.97 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=32.3
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH--hHHHHcCCCcccEEEE
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ--DLAAAQGVSAMPTFIF 80 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~--~l~~~~~v~~~Pt~~~ 80 (278)
.|+.++|+.|++..-.++...-. .....++..... .+.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57789999999888877766322 333344433222 2445567778998764
No 254
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.48 E-value=2.7 Score=36.31 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=31.6
Q ss_pred hHHHHcCCCcccEEEEEeCCC------CCHhHHHHHHHHHhcCCCC
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI------PDPNTLEAKIKQYYGVGEE 104 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~------~~~~~l~~~i~~~~~~~~~ 104 (278)
..+++.||+++|||+| +|+ .+++.+...|++.++...+
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKYAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE--cCcEeecCCCCHHHHHHHHHHHHhcccc
Confidence 3577899999999999 333 7889999999999987764
No 255
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.62 E-value=2.7 Score=33.16 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=26.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
+..|+.++|+.|+.....|++- ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCCc
Confidence 4578899999999988777654 6777777766554
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=81.19 E-value=3.6 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=27.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
+..|+.++|+.|+.....|++. ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCCc
Confidence 3468889999999998888774 6777778876654
No 257
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=81.00 E-value=4.9 Score=27.40 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=34.1
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC----CHhHHHHcCCCcccEEE
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ----NQDLAAAQGVSAMPTFI 79 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~ 79 (278)
..|+.++|+.|++..-.++...- ......++... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35789999999988877777633 23444455422 35666666677899995
No 258
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=80.83 E-value=4 Score=32.19 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCC
Q psy543 37 QRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 37 ~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
+.....+.+|..+-.. ..+.-+|.+.++|+|+.+|+|++.+++
T Consensus 39 ~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 39 KATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCC
Confidence 3444444445443322 333447999999999999999999876
No 259
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=79.04 E-value=7 Score=32.21 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=33.7
Q ss_pred cCCCeEEEEEEcCCC-hhhHHHHHHHHHHHHHCC----CcEEEEEECCCC
Q psy543 19 CGTKLVVVDFTASWC-GPCQRIAPVFEQLSRKYP----NAAFFKVDVDQN 63 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC-~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~ 63 (278)
..||++||.|.-+.| ..|-.+...+.++.++.+ ++.++-|.+|-.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 467999999999999 679888887777666542 678888887743
No 260
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=77.22 E-value=2.5 Score=36.77 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=39.2
Q ss_pred cCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCC-cEEEEEECCCC
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQN 63 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~ 63 (278)
.+++|+||+|.+-.||+=+.-.+.+++++++|.+ +.|+.|-+.+.
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 4569999999999999999999999999999986 56887777553
No 261
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.17 E-value=5.7 Score=31.33 Aligned_cols=35 Identities=11% Similarity=0.338 Sum_probs=26.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
+..|+.++|+.|+.....|++- ++.|-.+|+.+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCCC
Confidence 3467889999999988766653 6778778876654
No 262
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=74.30 E-value=8.5 Score=30.68 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=49.3
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCc----ccEEEE---EeCCCCCHhHHHHHH
Q psy543 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSA----MPTFIF---FRNKIPDPNTLEAKI 95 (278)
Q Consensus 23 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~----~Pt~~~---~~~g~~~~~~l~~~i 95 (278)
.-++.|++|.|+-|......++.. ++.+-.+..++-..+-++++|.. ==|.++ |-.|....+.+..++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 456779999999999988888732 67777788888888888888752 223332 223436777777666
Q ss_pred HHH
Q psy543 96 KQY 98 (278)
Q Consensus 96 ~~~ 98 (278)
.+-
T Consensus 101 ~~~ 103 (149)
T COG3019 101 AEK 103 (149)
T ss_pred hCC
Confidence 643
No 263
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.50 E-value=8.2 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=24.3
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCC-CcEEEEE
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKV 58 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~v 58 (278)
+|..|+|+.|-...|.+.++..+|+ .+.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 5899999999999999999999998 3544433
No 264
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=8.4 Score=33.24 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEE
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd 59 (278)
+..++.|...-|++|+...|.+.+.....+++.+...+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 78999999999999999999999877777765554444
No 265
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=70.09 E-value=47 Score=25.41 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=62.8
Q ss_pred HHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhHH----HHcCCCc-ccEEEEEe
Q psy543 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLA----AAQGVSA-MPTFIFFR 82 (278)
Q Consensus 11 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~----~~~~v~~-~Pt~~~~~ 82 (278)
+.-+.-...-++..++-|--+-.+.-.++.+.++++|+++. ++.|+.||-+.-|-+. +.|+|.- -|.+=+..
T Consensus 10 ~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~ 89 (120)
T cd03074 10 NMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVN 89 (120)
T ss_pred HHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEe
Confidence 33333344445778888999999999999999999999885 7999999999987544 4566652 47665543
Q ss_pred C-----------CC---CCHhHHHHHHHHH
Q psy543 83 N-----------KI---PDPNTLEAKIKQY 98 (278)
Q Consensus 83 ~-----------g~---~~~~~l~~~i~~~ 98 (278)
- +. .+.++|+.+|+..
T Consensus 90 vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 90 VTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccceeEecccccccCcHHHHHHHHHhh
Confidence 1 11 5677777777654
No 266
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=69.43 E-value=45 Score=28.32 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=47.3
Q ss_pred ccCCCeEEEEEEcCCCh-hhHHHHHHHHHHHHHCC-----CcEEEEEECCCC---HhHHHHcCC-CcccEEEEEeC
Q psy543 18 NCGTKLVVVDFTASWCG-PCQRIAPVFEQLSRKYP-----NAAFFKVDVDQN---QDLAAAQGV-SAMPTFIFFRN 83 (278)
Q Consensus 18 ~~~~k~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~---~~l~~~~~v-~~~Pt~~~~~~ 83 (278)
...|++++|.|.=+.|+ .|-.+...+..+.++.. +++++-|.+|-. ++..++|.. ...|.+....+
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeC
Confidence 34679999999977785 69988888877777654 465665555533 677788888 66676776654
No 267
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=68.06 E-value=62 Score=27.52 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=51.4
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC------------------HhHHHHcCCCc--ccEEEEEeCCC-
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN------------------QDLAAAQGVSA--MPTFIFFRNKI- 85 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~------------------~~l~~~~~v~~--~Pt~~~~~~g~- 85 (278)
.|.+.-|..|-.....|.+|+.+ +++..+...+|-. ...+.+++... +|-+++ +|.
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG~~ 80 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NGRE 80 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TTTE
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CCee
Confidence 46778999999999999999999 5888888888753 23555666665 466654 676
Q ss_pred ----CCHhHHHHHHHHHhcCCC
Q psy543 86 ----PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 86 ----~~~~~l~~~i~~~~~~~~ 103 (278)
.+...+...|.+.....+
T Consensus 81 ~~~g~~~~~~~~ai~~~~~~~~ 102 (202)
T PF06764_consen 81 HRVGSDRAAVEAAIQAARARPA 102 (202)
T ss_dssp EEETT-HHHHHHHHHHHHHTT-
T ss_pred eeeccCHHHHHHHHHHhhccCC
Confidence 788899999999887643
No 268
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.05 E-value=5.9 Score=34.18 Aligned_cols=78 Identities=31% Similarity=0.388 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHH----CC---CcEE---------------------------EEEEC-------
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRK----YP---NAAF---------------------------FKVDV------- 60 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~----~~---~v~~---------------------------~~vd~------- 60 (278)
....+.|..++|++|++....++.+..+ |- ...| ....+
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAADQGIVRYWAFHDALFGSQAEAWAASILCAKDLAKADLAALDEGKKAKLNQKACD 198 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhccccchhHHHHHHHHhhccccchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHH
Confidence 4566678899999999988888776653 21 0000 00000
Q ss_pred ---CCCHhHHHHcCCCcccEEEEEeC---CCCCHhHHHHHHHHHh
Q psy543 61 ---DQNQDLAAAQGVSAMPTFIFFRN---KIPDPNTLEAKIKQYY 99 (278)
Q Consensus 61 ---d~~~~l~~~~~v~~~Pt~~~~~~---g~~~~~~l~~~i~~~~ 99 (278)
.++..++..++|.++||+++-.. |-.+.++|.+.|....
T Consensus 199 ~~i~~~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 199 ALIAKNYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHHHHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHHHhh
Confidence 11235678899999999998643 2266778887777643
No 269
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=65.74 E-value=24 Score=25.31 Aligned_cols=53 Identities=9% Similarity=0.205 Sum_probs=34.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-HhHHHHcCCCcccEEEE
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-QDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~~ 80 (278)
+..|+.+.|+.|++..-.+....- ...+..++.... +.+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 344678889999988777666532 344445554433 33555556778999874
No 270
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=65.28 E-value=13 Score=30.41 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=30.3
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEEC
Q psy543 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60 (278)
Q Consensus 24 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~ 60 (278)
.|..|+..-||.|-...+.+.++.+.++++.+...-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 3678999999999999999999999996655554443
No 271
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.21 E-value=12 Score=31.66 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.2
Q ss_pred hHHHHcCCCcccEEEEEeCCC----------CCHhHHHHHHHHHh
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI----------PDPNTLEAKIKQYY 99 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~----------~~~~~l~~~i~~~~ 99 (278)
-+++++++.++||+++-++|+ .+++.+.+++.+.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 467899999999999999998 45677777776654
No 272
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=61.95 E-value=30 Score=23.12 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=32.3
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC----CHhHHHHcCCCcccEEEE
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ----NQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~----~~~l~~~~~v~~~Pt~~~ 80 (278)
.|+.++|+.|++..-.++...- ......++... .+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 4778999999988877766533 23444454322 244445455668899864
No 273
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.26 E-value=13 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.279 Sum_probs=40.9
Q ss_pred EEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCC--cccEEEE-EeCCC---CCHhHHHHHHH
Q psy543 28 FTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVS--AMPTFIF-FRNKI---PDPNTLEAKIK 96 (278)
Q Consensus 28 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~--~~Pt~~~-~~~g~---~~~~~l~~~i~ 96 (278)
||-.+|+-|......+.+.. ....+.|+.+.-.....+.+.+++. ..-+.+. ..+|+ ...+.+...+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 78999999999999888882 2235666555333444445666765 3444444 45664 34444444433
No 274
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=59.84 E-value=42 Score=23.02 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=34.9
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC----CCHhHHHHcCCCcccEEEEEeCCC
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD----QNQDLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
..|+.+.|+.|++..-.+++..- ...+..+|.. ..+++.+-..-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 45778889999888766655532 3455556552 234566656667899986 3554
No 275
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=59.26 E-value=46 Score=30.52 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=64.8
Q ss_pred cceEEc-cCCcceEEEeeecCceeEEEEEEe----cCCC--CCCceEEEEEcCCCCcCC--CcccCC------CCceeEE
Q psy543 145 ETYLES-DADEQLILSFTFNQSVKIHSLKIK----APKD--KGPKTLKLFINQPKTLDF--DAATSN------QSVQQIE 209 (278)
Q Consensus 145 ~~~l~S-d~D~qLii~ipF~~~vk~~si~i~----~~~~--~~P~~ik~f~N~~~~~~F--~~~~~~------~~~q~~~ 209 (278)
..|+.+ ....+..|.|-|.++++|..|.|= +..+ .+-|.|++|.|.....+- -.+..+ .-.|++.
T Consensus 71 ~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~~~~~~~irkapG~~~~D~~q~I~ 150 (329)
T PF14652_consen 71 HMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIFPGEGFLIRKAPGNCHFDFGQTIL 150 (329)
T ss_pred ceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEeecccceEEeeccccCccccccEEE
Confidence 345533 256788889999999999999996 3444 789999999997421110 011111 2345555
Q ss_pred eecCCCC--C---eeE------------ecccccccCccEEEEEEecCCCCCceEEEEEEEEEee
Q psy543 210 LTEKDLD--G---TPI------------NLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGS 257 (278)
Q Consensus 210 l~~~~~~--~---~~~------------~l~~~kf~~v~~ltlf~~~n~~~~~~t~i~~i~~~G~ 257 (278)
|....-. . .+. ....--+.....|+|-+-+|||+....-+.-|.|+.+
T Consensus 151 f~~~~k~~~~sks~~~~~~~~s~~~~~~~~~~~~~p~g~~l~~~ilStWGd~~yvGLngiElfD~ 215 (329)
T PF14652_consen 151 FTDQDKISENSKSPSLISNVNSEEQASQDYEIPELPCGFVLQIEILSTWGDPHYVGLNGIELFDE 215 (329)
T ss_pred eecccccccccccccccccccccccccccccccccccceEEEEEEeeccCCcceecccceEEEcC
Confidence 5432100 0 000 0111124567889999999998654333444444433
No 276
>KOG2507|consensus
Probab=59.04 E-value=77 Score=30.10 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=52.1
Q ss_pred cCCCeEEEEEEcCCChhhHHHHH--HHHHHHHHCC--CcEEEEEECCC--CHhHHHHcCCCcccEEEEEe-CCC------
Q psy543 19 CGTKLVVVDFTASWCGPCQRIAP--VFEQLSRKYP--NAAFFKVDVDQ--NQDLAAAQGVSAMPTFIFFR-NKI------ 85 (278)
Q Consensus 19 ~~~k~vlv~F~a~wC~~C~~~~p--~l~~l~~~~~--~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~-~g~------ 85 (278)
.+.+.++|.|-+........|.. .......+.- .+..++|+... ...++.-|.+..+|.++|+. .|.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 44578888888888888888873 2233332222 34445555432 35677889999999998886 455
Q ss_pred --CCHhHHHHHHHHH
Q psy543 86 --PDPNTLEAKIKQY 98 (278)
Q Consensus 86 --~~~~~l~~~i~~~ 98 (278)
...++|...|++.
T Consensus 96 g~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 96 GFVTADELASSIEKV 110 (506)
T ss_pred ccccHHHHHHHHHHH
Confidence 5577777666653
No 277
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=57.06 E-value=36 Score=25.84 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=37.2
Q ss_pred hccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 17 NNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 17 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
++-+|+++||.=-|+-|+.-. ....|++|.++|. ++.++..-|.+
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 455789999999999999999 7779999999996 67777777654
No 278
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=54.71 E-value=14 Score=28.66 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=19.7
Q ss_pred hHHHHcCCCcccEEEEEeCCC-----CCHhHHHHHH
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI-----PDPNTLEAKI 95 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~-----~~~~~l~~~i 95 (278)
.++.+++|.++||+++ +|+ .+.+.|++.|
T Consensus 120 ~~~~~~gi~gtPt~~v--~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFII--GDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEE--CCEEecCCCCHHHHHHHh
Confidence 5667889999999887 344 4455555443
No 279
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.88 E-value=22 Score=27.14 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=24.9
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
+..|+.+.|..|+.....|++- ++.+-.+|.-+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcCC
Confidence 3468899999999888776654 5666666655443
No 280
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=53.19 E-value=22 Score=29.06 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred HhHHHHcCCCcccEEEEEeCCC------CCHhHHHHHH
Q psy543 64 QDLAAAQGVSAMPTFIFFRNKI------PDPNTLEAKI 95 (278)
Q Consensus 64 ~~l~~~~~v~~~Pt~~~~~~g~------~~~~~l~~~i 95 (278)
...+.++||.++||+++ +|+ ...+.|++.|
T Consensus 157 ~~~a~~~gv~GvP~~vv--~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVV--NGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEE--TTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEE--CCEEEEECCCCHHHHHHHh
Confidence 35678899999999999 554 4445555444
No 281
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=51.95 E-value=65 Score=28.16 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=59.4
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC------------------CHhHHHHcCCCcccEEEEEeC
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ------------------NQDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~------------------~~~l~~~~~v~~~Pt~~~~~~ 83 (278)
+-||=.|.+.-|..|--....|.+++++ +++.-+..++|- +......|+-++++|=-.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3445556677899999999999999876 466666555543 235667788998888666667
Q ss_pred CC-----CCHhHHHHHHHHHhcCCC
Q psy543 84 KI-----PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 84 g~-----~~~~~l~~~i~~~~~~~~ 103 (278)
|+ +++.+++..|...-....
T Consensus 121 Gr~~~~Gad~~~i~~~i~a~~~~g~ 145 (261)
T COG5429 121 GRVHANGADPGAIEDAIAAMARRGA 145 (261)
T ss_pred chhhhcCCCHHHHHHHHHHhhcccc
Confidence 77 889999999988765553
No 282
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.93 E-value=20 Score=29.40 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=24.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYP 51 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~ 51 (278)
|.+|+.+.|+.|-...+.++++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999984
No 283
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.06 E-value=63 Score=24.35 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=46.6
Q ss_pred hHHHHHHhccCCCeEEEEE-E---cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcC-CCcccEE-EEEeC
Q psy543 10 AHFHTEMNNCGTKLVVVDF-T---ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQG-VSAMPTF-IFFRN 83 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F-~---a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~ 83 (278)
+-+++.++++ +|+++- . .|-||...+....|..+.. +.|..+|+=.++++.+... ....||| -+|-+
T Consensus 6 ~~I~~~i~~n---~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 6 DRIQKQIKEN---PVVLFMKGTPEFPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred HHHHHHhhcC---ceEEEecCCCCCCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 4456666543 444432 2 4778888888877776632 8899999999999887654 3467886 45667
Q ss_pred CC
Q psy543 84 KI 85 (278)
Q Consensus 84 g~ 85 (278)
|.
T Consensus 79 GE 80 (105)
T COG0278 79 GE 80 (105)
T ss_pred CE
Confidence 66
No 284
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=1e+02 Score=26.06 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCeEEEEEE-cCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 20 GTKLVVVDFT-ASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 20 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
.+|.+++.|| +..-..|-.....+.+.+.++. ++.++-+.+|.
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds 77 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDS 77 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCc
Confidence 3478888888 4566777777777777776665 67887777754
No 285
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=49.71 E-value=1.8e+02 Score=25.44 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHhccCCCeEEEEEEcCC------ChhhHHHHHHHHHHHHHCC-CcEEEEEECCCCHhHHHH----cCCCc
Q psy543 13 HTEMNNCGTKLVVVDFTASW------CGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAA----QGVSA 74 (278)
Q Consensus 13 ~~~l~~~~~k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~----~~v~~ 74 (278)
.++|++-. ++|-|.+|.+- -..=+.+...|++.++.-+ ++.+-.+|-+.+++.+++ ||+..
T Consensus 17 ~~~L~~L~-~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 17 KKVLKSLD-EPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHhCC-CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 44565554 45555555554 3333444444555555445 799999999888776655 88776
No 286
>KOG1422|consensus
Probab=49.66 E-value=1e+02 Score=26.39 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHH-cCCCcccEEEEEeCCCCCHhHHHHHHHHHhcCCC
Q psy543 32 WCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA-QGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 32 wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~-~~v~~~Pt~~~~~~g~~~~~~l~~~i~~~~~~~~ 103 (278)
.|+.|+++.-.|. .+-....+-.||+...|+..+. ..-..+|.+.+=.....+...++++|.+.+....
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 4777776655554 4444677888999988876644 4455666666544555999999999999887655
No 287
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=45.09 E-value=33 Score=29.21 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.6
Q ss_pred CCHhHHHHcCCCcccEEEEEeCC
Q psy543 62 QNQDLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 62 ~~~~l~~~~~v~~~Pt~~~~~~g 84 (278)
-+|.+.++|+|+.+|+|++...+
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~ 172 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ 172 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC
Confidence 36899999999999999997543
No 288
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=44.97 E-value=35 Score=28.76 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.9
Q ss_pred hHHHHcCCCcccEEEEEeCCC
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
..+++++|+++|||++ +|+
T Consensus 158 ~~a~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 158 KAAADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHHHcCCCCCCEEEE--CCE
Confidence 4668899999999998 565
No 289
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=44.71 E-value=89 Score=23.97 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH-hHHHHcC--CCcccEEEEEeC
Q psy543 33 CGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-DLAAAQG--VSAMPTFIFFRN 83 (278)
Q Consensus 33 C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-~l~~~~~--v~~~Pt~~~~~~ 83 (278)
|++|..+...|...-..-..+.+.+|+...-. .+....| -++.|++++=.+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 99999888777554433336888889887753 3333333 578999887543
No 290
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=44.18 E-value=96 Score=20.76 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=31.7
Q ss_pred cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 30 ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 30 a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
.+||+.|.+..-.++.. ++.+-.++++... .-.-..+|++.. +|. .+...+..+|
T Consensus 13 ~s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 13 PSLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CCCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 36999999988777664 4555555554321 112347898864 344 3444444444
No 291
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=43.04 E-value=37 Score=25.67 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=24.8
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
..|+.+.|..|+.....|++- ++.+..+|.-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCC
Confidence 468899999999988776654 5666666665543
No 292
>KOG2792|consensus
Probab=42.92 E-value=1.1e+02 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCCeEEEEEEcCCChh-hHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCCCCHhHHHHHHHH
Q psy543 20 GTKLVVVDFTASWCGP-CQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQ 97 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~l~~~i~~ 97 (278)
.||.+|++|.-+.||. |-.....+.++.++. -...++..+|-|+-.+..+-+++.+...+.+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i----------------~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEI----------------EAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHH----------------hccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 5799999999999974 766655555554432 2223445555555555443344444444443
No 293
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=42.23 E-value=1.4e+02 Score=21.96 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=39.3
Q ss_pred ceEEccCCcceEEEeeecCceeEEEEEEecCCC--C-CCceEEEEEcCCCCcCCCcccCC
Q psy543 146 TYLESDADEQLILSFTFNQSVKIHSLKIKAPKD--K-GPKTLKLFINQPKTLDFDAATSN 202 (278)
Q Consensus 146 ~~l~Sd~D~qLii~ipF~~~vk~~si~i~~~~~--~-~P~~ik~f~N~~~~~~F~~~~~~ 202 (278)
.|.....+..--+.|.|.++++|++|.|....+ . .|+.++|+.-... .+|..+.+.
T Consensus 28 ~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~dg-~~w~~~~~~ 86 (129)
T PF00754_consen 28 AWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSNDG-SNWTTVASQ 86 (129)
T ss_dssp SEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESSS-SSEEEEEET
T ss_pred EEECCCCCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeeccc-ccccccccc
Confidence 344432333444588899999999999996433 4 8999999887653 677766653
No 294
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=41.98 E-value=39 Score=25.66 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=25.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
..|+.+.|..|++....|++- ++.+..+|.-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCC
Confidence 468899999999998888764 6666667765543
No 295
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=41.24 E-value=1.7e+02 Score=23.27 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcc--cEEEEEeCCC--CCHhHHHHHHHH
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAM--PTFIFFRNKI--PDPNTLEAKIKQ 97 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~--Pt~~~~~~g~--~~~~~l~~~i~~ 97 (278)
++-.|.+|-.-|+-|-.....|.+.-.. ..+.|+.+..+.-..+....++..- =++++.++|+ ...+.+.+.+..
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRL 85 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHH
Confidence 6677789999999999977776655322 2688888888887777777777643 4677777777 444444444443
No 296
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.40 E-value=22 Score=29.40 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCCHhHHHHcCCCcccEEEEEeCCC------CCHhHHHHHHH
Q psy543 60 VDQNQDLAAAQGVSAMPTFIFFRNKI------PDPNTLEAKIK 96 (278)
Q Consensus 60 ~d~~~~l~~~~~v~~~Pt~~~~~~g~------~~~~~l~~~i~ 96 (278)
+.++...+.+.||.++|||++ +|+ .+.+.+.+.|+
T Consensus 161 ~~~~~~~a~~~gv~G~Pt~vv--~g~~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 161 VRADEARARQLGISGVPFFVF--NGKYAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHHHHCCCCcCCEEEE--CCeEeecCCCCHHHHHHHhC
No 297
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.95 E-value=1.2e+02 Score=20.29 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=31.6
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC-CHhHHHHcCCCcccEEEE
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ-NQDLAAAQGVSAMPTFIF 80 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~-~~~l~~~~~v~~~Pt~~~ 80 (278)
.|+.+.|+.|.+..-.+....... ....+.+|... .+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467888999998877666521111 24444554322 345555556678898764
No 298
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=37.27 E-value=2.1e+02 Score=22.66 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=49.4
Q ss_pred ceEEecChhHHHHHHhccCCCeEEEEEEcCCChhhH-HHHHHHHHHHHH-CCCcEEEEEECCCCHhH---HHHcC---CC
Q psy543 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQ-RIAPVFEQLSRK-YPNAAFFKVDVDQNQDL---AAAQG---VS 73 (278)
Q Consensus 2 ~v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~-~~~p~l~~l~~~-~~~v~~~~vd~d~~~~l---~~~~~---v~ 73 (278)
.++++.+.++.++.+++.. +.+|| +-.+-||--- ..+|........ .+--.++.|=.-...+. ++.|= --
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~-GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pP 94 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKE-GTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPP 94 (136)
T ss_dssp T-EE--SHHHHHHHHHH---SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS--
T ss_pred CccccCCHHHHHHHHhCCC-CcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCC
Confidence 3689999999999998443 33433 3467787443 355655433332 22234444444444322 23332 23
Q ss_pred cccEEEEEeCCC------------CCHhHHHHHHHHHh
Q psy543 74 AMPTFIFFRNKI------------PDPNTLEAKIKQYY 99 (278)
Q Consensus 74 ~~Pt~~~~~~g~------------~~~~~l~~~i~~~~ 99 (278)
+-|++.+|++|+ .+.+.+.+.|...+
T Consensus 95 SSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp -SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 568999999999 56666666555443
No 299
>KOG0911|consensus
Probab=36.27 E-value=1.9e+02 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=38.5
Q ss_pred cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcC-CCcccEE-EEEeCCC
Q psy543 30 ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQG-VSAMPTF-IFFRNKI 85 (278)
Q Consensus 30 a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~g~ 85 (278)
.|-||..+++...|+.. ++.|...|+-.+.++.+... ....||| -+|-+|.
T Consensus 151 ~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 47899999888888776 67799999999988765544 3457887 4566665
No 300
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=36.04 E-value=1.3e+02 Score=20.10 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=36.8
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-HhHHHHcCC-CcccEEEEEeCCC--CCHhHHHHHHH
Q psy543 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-QDLAAAQGV-SAMPTFIFFRNKI--PDPNTLEAKIK 96 (278)
Q Consensus 27 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-~~l~~~~~v-~~~Pt~~~~~~g~--~~~~~l~~~i~ 96 (278)
.|+.+.|+.|.+..-.+....-. .....++.... +.+.+.... ..+|++.. +|. .+...+...|+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYID 71 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHH
Confidence 45677899999988777665332 33344444332 333333333 68998863 444 44444544444
No 301
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.73 E-value=59 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHH
Q psy543 25 VVDFTASWCGPCQRIAPVFEQL 46 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l 46 (278)
+..|+.+.|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5568999999999998887765
No 302
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.00 E-value=1.4e+02 Score=21.32 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=37.0
Q ss_pred hHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCC
Q psy543 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVS 73 (278)
Q Consensus 10 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~ 73 (278)
++....|.+. -+-+.|-|..|++ .....+..+++.+ ++.++.++ ...+|....|..
T Consensus 17 ~~v~kai~~g---kaklViiA~D~~~--~~~~~i~~~c~~~-~Vp~~~~~--s~~eLG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRG---SVKEVVVAEDADP--RLTEKVEALANEK-GVPVSKVD--SMKKLGKACGIE 72 (82)
T ss_pred HHHHHHHHcC---CeeEEEEECCCCH--HHHHHHHHHHHHc-CCCEEEEC--CHHHHHHHHCCC
Confidence 4444555433 3334466999999 5778888888877 78887777 446666666654
No 303
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=34.52 E-value=42 Score=27.30 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=0.0
Q ss_pred hHHHHcCCCcccEEEEEeCCC-----CCHhHHHHHHH
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI-----PDPNTLEAKIK 96 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~-----~~~~~l~~~i~ 96 (278)
..+.++||.++|||++ +|+ ...+.+...|+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCeeecccccHHHHHHHhC
No 304
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=33.64 E-value=57 Score=26.11 Aligned_cols=19 Identities=26% Similarity=0.509 Sum_probs=15.7
Q ss_pred hHHHHcCCCcccEEEEEeCCC
Q psy543 65 DLAAAQGVSAMPTFIFFRNKI 85 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g~ 85 (278)
..+.+++|.++||+++ +|+
T Consensus 134 ~~~~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 134 KLAKKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHHHcCCCCCCeEEE--CCE
Confidence 5677899999999988 565
No 305
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=32.76 E-value=37 Score=27.95 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=15.3
Q ss_pred HhHHHHcCCCcccEEEEEeC
Q psy543 64 QDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 64 ~~l~~~~~v~~~Pt~~~~~~ 83 (278)
..++++++|+++||++++..
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE--
T ss_pred HHHHHHcCCCCCCEEEEEec
Confidence 36889999999999999983
No 306
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=30.88 E-value=2e+02 Score=26.27 Aligned_cols=41 Identities=17% Similarity=0.447 Sum_probs=32.4
Q ss_pred CCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC
Q psy543 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN 63 (278)
Q Consensus 20 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~ 63 (278)
.....||++. ||.|+.....|+.+...-..+.++.||++..
T Consensus 75 ~~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 75 PSGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 3355788887 8889999999999876555788999999753
No 307
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.20 E-value=96 Score=21.26 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=25.3
Q ss_pred ccEEEEEeCCC----CCHhHHHHHHHHHhcCCC
Q psy543 75 MPTFIFFRNKI----PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 75 ~Pt~~~~~~g~----~~~~~l~~~i~~~~~~~~ 103 (278)
=|++++|.+|. .+++..++.+++++....
T Consensus 17 gPvl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 17 GPVLVVYPEGVWYTRVDPEDARRIVQSHLLGGR 49 (64)
T ss_pred CCEEEEecCCeeEeccCHHHHHHHHHHHHhCCC
Confidence 48999999888 899999999999987665
No 308
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=30.20 E-value=92 Score=23.25 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=21.8
Q ss_pred EEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCH
Q psy543 28 FTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ 64 (278)
Q Consensus 28 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~ 64 (278)
|+.+.|..|+.....|++- ++.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCC
Confidence 5778999999998888763 6777788887765
No 309
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.90 E-value=49 Score=27.00 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.9
Q ss_pred hHHHHcCCCcccEEEEEeCC
Q psy543 65 DLAAAQGVSAMPTFIFFRNK 84 (278)
Q Consensus 65 ~l~~~~~v~~~Pt~~~~~~g 84 (278)
..+.++||.++|||++..++
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 160 KLARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHcCCCccCEEEEEeCC
Confidence 45678899999999998765
No 310
>PF10807 DUF2541: Protein of unknown function (DUF2541); InterPro: IPR020240 This entry represents proteins found in the Gammaproteobacteria that have no known function.
Probab=29.86 E-value=76 Score=24.80 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCcceEEEeeecCceeEEEEEEecCC-C-CCCceEEEEEcCCCCcCCCcccCCCCceeEEeecCCCCCeeEecccccccC
Q psy543 152 ADEQLILSFTFNQSVKIHSLKIKAPK-D-KGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDGTPINLRYVKFQN 229 (278)
Q Consensus 152 ~D~qLii~ipF~~~vk~~si~i~~~~-~-~~P~~ik~f~N~~~~~~F~~~~~~~~~q~~~l~~~~~~~~~~~l~~~kf~~ 229 (278)
....+.+.+|-+..|| +|.|+++- | +--+..-.|.|... ..|+|.+...--++.. +-
T Consensus 38 e~~~~~l~lpvCR~vk--rIql~AdRgDi~L~~a~v~Fk~~~g-----------~s~~l~~~~~ikeg~t-----T~--- 96 (134)
T PF10807_consen 38 ETNDLTLKLPVCRRVK--RIQLKADRGDIQLSGATVYFKNANG-----------ESQTLNFPRSIKEGQT-----TD--- 96 (134)
T ss_pred CCCCceeeccceeeee--eEEEeeccCCeEeeeeEEEEEeccc-----------cceEEcccccccCCCc-----cC---
Confidence 3445666777776654 57777643 4 11111334665432 3466766442102211 11
Q ss_pred ccEEEEEEecCCCCCceEEEEEEEEEeeecccCCccccccccC
Q psy543 230 VQNLQIFVLDNQTEAETTVITHLALIGSPILTTKMSDFKRVAG 272 (278)
Q Consensus 230 v~~ltlf~~~n~~~~~~t~i~~i~~~G~~~~~~~~~~~~~~~~ 272 (278)
.+.|.+..| ..-=|.+|.+.|.++...||+-+|-+++
T Consensus 97 ----Wi~i~sdn~--nkRCVskI~~~G~t~nSS~~A~lKvigd 133 (134)
T PF10807_consen 97 ----WININSDND--NKRCVSKITFSGHTVNSSDMASLKVIGD 133 (134)
T ss_pred ----cEEecCCCC--cceeeeEEEEEeeeccCccceeeEeecC
Confidence 122332222 2455899999999999999999997743
No 311
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=29.79 E-value=48 Score=26.90 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=33.9
Q ss_pred ccccCCCCCcccccccccC--cceEEccCCc-ceEEEeeecCceeEEEEEEec
Q psy543 126 CEALNESDQHPFTNCLNTA--ETYLESDADE-QLILSFTFNQSVKIHSLKIKA 175 (278)
Q Consensus 126 ~~~LNe~~~~~~~~~l~~~--~~~l~Sd~D~-qLii~ipF~~~vk~~si~i~~ 175 (278)
+.|-.|+..++..++|..+ ..|.....++ |+-+-+-|..++.|++|.|..
T Consensus 10 vS~SSed~~~~A~NLL~~d~~r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN 62 (153)
T PF01834_consen 10 VSFSSEDPVHPAENLLKSDTYRKWKCAKAGEKQASVELQLEKASQITSIDIGN 62 (153)
T ss_dssp EEESSS-SSSHGGGGSCGGGCHHEEHSSTT-SEEEEEEEEEEEE--SEEEEEE
T ss_pred EEEeCCCCCCchhhccCcccCCcccccCCCCceEEEEEEecCceEEEEEeccC
Confidence 3566677788889999763 4476565554 555778899999999999973
No 312
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=28.79 E-value=1.8e+02 Score=19.40 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=37.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECC----CCHhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHH
Q psy543 26 VDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD----QNQDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKI 95 (278)
Q Consensus 26 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i 95 (278)
..|+.+.|+.|++..-.+....-. .....++.. ..+.+.+......+|++. .+|. .....+...|
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l~es~aI~~yL 73 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKLFESRAITRYL 73 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEEEcHHHHHHHH
Confidence 345566799999888777765332 344444442 234556666677899875 3443 3344444443
No 313
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=27.90 E-value=2.8e+02 Score=21.55 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCcEEEEEECCCCHh----------HHHHcCCCcccEEEE----EeCCC-CCHhHHHHHHHHHhcC
Q psy543 39 IAPVFEQLSRKYPNAAFFKVDVDQNQD----------LAAAQGVSAMPTFIF----FRNKI-PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 39 ~~p~l~~l~~~~~~v~~~~vd~d~~~~----------l~~~~~v~~~Pt~~~----~~~g~-~~~~~l~~~i~~~~~~ 101 (278)
+...++.|.+ .++.+.+.+...+|. +.+.-|...+|-+++ ++.|+ ++.++|.+++.--...
T Consensus 29 ~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~ 104 (123)
T PF06953_consen 29 FAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSE 104 (123)
T ss_dssp HHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGG
T ss_pred HHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCccc
Confidence 3444455543 389999999998763 344568899998764 34444 8888888877654433
No 314
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=27.73 E-value=2.4e+02 Score=20.53 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=41.8
Q ss_pred cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHh-HHHHcCCCcccEEEEEeCCC--CCHhHHHHHHHHHhc
Q psy543 30 ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQD-LAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIKQYYG 100 (278)
Q Consensus 30 a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~~~~ 100 (278)
..+|+.|++..=.|.+..- ...+..+|....++ +.+......+|++. .+|. .+...+.+.|++...
T Consensus 19 ~g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEecCHHHHHHHHHHHcc
Confidence 4679999988766655411 34445566555554 44545567899665 3455 677777777776653
No 315
>KOG1651|consensus
Probab=27.58 E-value=1.5e+02 Score=24.44 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=38.3
Q ss_pred hccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 17 NNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 17 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
.+-.|+.+|+.=-|+-|+.-..-...|..|.++|. ++.++..-|..
T Consensus 30 ~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 30 SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 34567999999999999999977779999999996 68888887753
No 316
>PRK10853 putative reductase; Provisional
Probab=25.47 E-value=1e+02 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=24.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN 63 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~ 63 (278)
+..|+.+.|..|+.....|++- ++.+-.+|.-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC
Confidence 4568889999999998888754 566666665444
No 317
>PRK13669 hypothetical protein; Provisional
Probab=24.78 E-value=1.8e+02 Score=20.85 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC----CCHhHHHHHHHHHhcC
Q psy543 42 VFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI----PDPNTLEAKIKQYYGV 101 (278)
Q Consensus 42 ~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~----~~~~~l~~~i~~~~~~ 101 (278)
.++.+ +++|++.+...+|-..=..|. .=.| .+-+|+ .++++|.+.|.+++..
T Consensus 19 ~~~~L-e~dP~~dVie~gCls~CG~C~------~~~F-AlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 19 AFEKL-EKDPNLDVLEYGCLGYCGICS------EGLF-ALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred HHHHH-HhCCCceEEEcchhhhCcCcc------cCce-EEECCeEeecCCHHHHHHHHHHHHhh
Confidence 35555 678999998888755433332 2223 334666 7899999999988865
No 318
>PRK10387 glutaredoxin 2; Provisional
Probab=24.59 E-value=2.9e+02 Score=22.60 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=40.4
Q ss_pred EEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHHHHHhc
Q psy543 28 FTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIKQYYG 100 (278)
Q Consensus 28 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~~~~ 100 (278)
++.+.|++|.+..-.++...-.| ....++...............+|+++. .+|. .+...|...|.+..+
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l~eS~aI~~yL~~~~~ 74 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQK-DDGSYMPESLDIVHYIDELDG 74 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEEe-cCCeEecCHHHHHHHHHHhCC
Confidence 45778999998887766653222 223333322221122233457899854 3555 677778888877664
No 319
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.51 E-value=5.8e+02 Score=23.81 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=63.1
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC---CcEEEEEECCCCHhH----HHHcCCCc-
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDL----AAAQGVSA- 74 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l----~~~~~v~~- 74 (278)
++.++ .+++-+.-...-+...+|-|--.--+.-..+...|+++|+... ++.+++||-+.-|-+ -+.|+|.-
T Consensus 251 lrkl~-~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~ 329 (383)
T PF01216_consen 251 LRKLR-PEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS 329 (383)
T ss_dssp EEE---GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT
T ss_pred hhhCC-hhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc
Confidence 34443 3333333343445778888888999999999999999999774 799999999998754 35677753
Q ss_pred ccEEEEEeCCC--------------CCHhHHHHHHHHHhcCCC
Q psy543 75 MPTFIFFRNKI--------------PDPNTLEAKIKQYYGVGE 103 (278)
Q Consensus 75 ~Pt~~~~~~g~--------------~~~~~l~~~i~~~~~~~~ 103 (278)
-|.+-+..-.. ++.++|+.+|...+...-
T Consensus 330 ~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 330 RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 48876664221 688999999999985544
No 320
>KOG1731|consensus
Probab=23.52 E-value=1.2e+02 Score=29.97 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCcEEEEEECCCCHhHHHHcCCCcccEEEEEeCCC--------CCHhHHHHHHHHHhcCCCCCCc-cccccCCccchhhh
Q psy543 51 PNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI--------PDPNTLEAKIKQYYGVGEESGE-ESGVAGHMDLTSFI 121 (278)
Q Consensus 51 ~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~--------~~~~~l~~~i~~~~~~~~~~~~-~~~~~g~~~L~~~I 121 (278)
+++.+-.+-.++.-.+++ +++...|+.+++++|. .+.+...+.|.++++...+... .-.+.......+.|
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a~~pt~~p~~~~~~~~~I 292 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEASGPTLHPITATTAAPTI 292 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccccCCCCcCcccccccchhh
Confidence 455555555555555666 8899999999999999 4456778899999987764322 22333333455666
Q ss_pred hccc
Q psy543 122 MKNQ 125 (278)
Q Consensus 122 d~~~ 125 (278)
|...
T Consensus 293 d~~~ 296 (606)
T KOG1731|consen 293 DAPS 296 (606)
T ss_pred hcch
Confidence 6654
No 321
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=23.35 E-value=2.6e+02 Score=19.27 Aligned_cols=64 Identities=6% Similarity=0.085 Sum_probs=35.8
Q ss_pred cCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHH---cCCCcccEEEEEeCCC--CCHhHHHHHHHH
Q psy543 30 ASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA---QGVSAMPTFIFFRNKI--PDPNTLEAKIKQ 97 (278)
Q Consensus 30 a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~---~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~ 97 (278)
.+||+.|.+..-.+....-. .....++.......... -....+|++.. .+|. .+...+...|.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEeCHHHHHHHHHH
Confidence 47899999988777765333 33444454332222221 23457898853 3255 556666666654
No 322
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=23.31 E-value=4.3e+02 Score=21.84 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC-HhHHHHcCCCcccEEEEEeCCC--CCHhHHHHHHHHHh
Q psy543 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN-QDLAAAQGVSAMPTFIFFRNKI--PDPNTLEAKIKQYY 99 (278)
Q Consensus 23 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~-~~l~~~~~v~~~Pt~~~~~~g~--~~~~~l~~~i~~~~ 99 (278)
..+..|+.++|+.|.+..=.+++..- ......+|.... +++.+......+|++. .+|. .....|...|.+..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l~ES~AIl~YL~~~~ 83 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTLYESRIIMEYLDERF 83 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEeeCHHHHHHHHHHhC
Confidence 34555666789999998877766532 344455555433 3555555567899996 3555 56667777777665
Q ss_pred cC
Q psy543 100 GV 101 (278)
Q Consensus 100 ~~ 101 (278)
+.
T Consensus 84 ~~ 85 (211)
T PRK09481 84 PH 85 (211)
T ss_pred CC
Confidence 43
No 323
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=1.6e+02 Score=24.10 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=34.4
Q ss_pred HhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCC--CcEEEEEECCC
Q psy543 16 MNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKVDVDQ 62 (278)
Q Consensus 16 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~ 62 (278)
+.+-.|+++||.=.|+-|+.--+. ..|+.|+++|. ++.++-.-|.+
T Consensus 20 l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 20 LSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred HHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccc
Confidence 444578999999999999887744 36788888887 56666666643
No 324
>PRK10026 arsenate reductase; Provisional
Probab=23.02 E-value=1.4e+02 Score=23.85 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=24.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN 63 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~ 63 (278)
+..|+.+.|..|+.....|++- ++.|-.+|.-+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC
Confidence 4568899999999998877765 555655555443
No 325
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=22.91 E-value=1.7e+02 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=24.8
Q ss_pred cceEEEeeecCceeEEEEEEecCCCCCCceEEEEE
Q psy543 154 EQLILSFTFNQSVKIHSLKIKAPKDKGPKTLKLFI 188 (278)
Q Consensus 154 ~qLii~ipF~~~vk~~si~i~~~~~~~P~~ik~f~ 188 (278)
.++-+++|=..+|+|..+.|+..+ ..|++|.++.
T Consensus 52 ~~~~v~V~~~~~vEi~~l~l~N~~-~~~r~L~vts 85 (110)
T PF06165_consen 52 TELTVFVPPDDPVEIRRLRLTNTS-NRPRRLSVTS 85 (110)
T ss_dssp EEEEEE--TTSSEEEEEEEEEE-S-SS-EEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEECc-CCcEEEEEEE
Confidence 588899999999999999999533 3577788764
No 326
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=2.5e+02 Score=22.88 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC---CHhHHHHcCCCcccEEEEEeC
Q psy543 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ---NQDLAAAQGVSAMPTFIFFRN 83 (278)
Q Consensus 22 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~Pt~~~~~~ 83 (278)
+.++..|=+-.-+.|......+++.+.++.++.++.|..|- ...+|...|+..+=++--|++
T Consensus 46 ~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~ 110 (158)
T COG2077 46 KKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRD 110 (158)
T ss_pred eEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhh
Confidence 45556666778899999999999999999999898888875 456777778877555555554
No 327
>KOG4277|consensus
Probab=22.51 E-value=6e+02 Score=23.25 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=46.4
Q ss_pred eEEecChhHHHHHHhccCCCeEEEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCCCHhHHHHcCCCcccEEEEEe
Q psy543 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82 (278)
Q Consensus 3 v~~i~s~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (278)
+++.-+..+.+..-.+...++.+|+|.+.--+--. ...+...+++.-.+|+...-+-.| .......+|.+.+|+
T Consensus 135 iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d---~fidAASe~~~~a~FfSaseeVaP---e~~~~kempaV~VFK 208 (468)
T KOG4277|consen 135 IIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFD---AFIDAASEKFSVARFFSASEEVAP---EENDAKEMPAVAVFK 208 (468)
T ss_pred eeeecChhHHHHHHHhhccCceEEEEeCCCCcHHH---HHHHHhhhheeeeeeeccccccCC---cccchhhccceEEEc
Confidence 34444444433322234558999888765443211 122223333323344432222222 223456789999998
Q ss_pred CCC------CCHhHHHHHHHH
Q psy543 83 NKI------PDPNTLEAKIKQ 97 (278)
Q Consensus 83 ~g~------~~~~~l~~~i~~ 97 (278)
+.. -+.++|..||.+
T Consensus 209 Detf~i~de~dd~dLseWinR 229 (468)
T KOG4277|consen 209 DETFEIEDEGDDEDLSEWINR 229 (468)
T ss_pred cceeEEEecCchhHHHHHHhH
Confidence 875 567778888775
No 328
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=21.79 E-value=3.9e+02 Score=20.96 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=22.1
Q ss_pred EEEEc--CCChhhHHHHHHHHHHHHHCCCcEEEEEE
Q psy543 26 VDFTA--SWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59 (278)
Q Consensus 26 v~F~a--~wC~~C~~~~p~l~~l~~~~~~v~~~~vd 59 (278)
|..|+ +-|..|.. +++++.++||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 34444 45888875 788888899988876554
No 329
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.49 E-value=1.7e+02 Score=22.78 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=23.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHCCCcEEEEEECCC
Q psy543 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62 (278)
Q Consensus 25 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~ 62 (278)
+..|+-+.|..|+.....|++- ++.+-.+|.-+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccC
Confidence 4567889999999988887765 55555555433
Done!