RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy543
(278 letters)
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical
protein, regulatory protei apoptosis, cancer; NMR {Homo
sapiens}
Length = 171
Score = 200 bits (511), Expect = 3e-65
Identities = 81/170 (47%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 106 GEESGVAGHMDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQS 165
G G+MDL FI K CE LNESD+H F NCL T+LESD DEQL+++ FNQ
Sbjct: 1 GSSGSSGGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQP 60
Query: 166 VKIHSLKIKAPKD-KGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDGT-PINLR 223
VK++S+K + P + +GPK +K+FIN P+++DF+ A ++ Q +ELTE D+ + LR
Sbjct: 61 VKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLR 120
Query: 224 YVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPILTTKMSDFKRVAGE 273
YVKFQNV ++ IFV NQ E ETT I++ IG+P+ T M+DFK
Sbjct: 121 YVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKSGPSS 170
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
b.18.1.26
Length = 161
Score = 180 bits (459), Expect = 1e-57
Identities = 67/161 (41%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 105 SGEESG---VAGHMDLTSFIMKNQCEALNESDQHPFTNCL-----NTAETYLESDADEQL 156
S ES G +DL FI + E LN+S H N L LESDADEQL
Sbjct: 1 SSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQL 60
Query: 157 ILSFTFNQSVKIHSLKIKAPKDKGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLD 216
++ FNQ +K+HS IK P+++GPKT+K F N+ + F ELTE++L
Sbjct: 61 LIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKE-HMCFSNVNDFPPSDTAELTEENLK 119
Query: 217 GTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGS 257
G P+ L+YVKFQNV++L IF+ NQ+ +E T + +AL GS
Sbjct: 120 GKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGS 160
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 168 bits (428), Expect = 5e-53
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD 61
++ + S F + L+VV F A W C ++ V +L+++ P +F K++ +
Sbjct: 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE 72
Query: 62 QNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYGVGEESGEESGVAGH 114
+++ +S++PTF+FF+N L K++++ G + V
Sbjct: 73 GVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSG-SFLPSAKVKVD 131
Query: 115 MDLTSFIMKNQCEALNESDQH 135
D S + AL H
Sbjct: 132 TDPNSSSVDKLAAALEHHHHH 152
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 153 bits (388), Expect = 1e-47
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + + SD F E++ G++L VV FT CGPC RIAP F +S KYP A F +VDV
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
Q Q AA +SA PTF FFRNK+ D LE KIKQ+
Sbjct: 61 HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 149 bits (378), Expect = 6e-46
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
S+ I S F ++ G KLVVVDF+A+WCGP + I P F LS KY N F +VDV
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDV 70
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
D QD+A+ V +MPTF FF+ + LEA I +
Sbjct: 71 DDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 115
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 148 bits (375), Expect = 1e-45
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
+ I S F ++ G KLVVVDF+A+WCGPC+ I P F LS KY N F +VDVD
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
QD+A+ V +MPTF FF+ + LEA I +
Sbjct: 62 CQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 147 bits (372), Expect = 3e-45
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
+ V+ + A +N +L+VVDF A WCGPC+ IAP E L+++ P F KVDVDQ
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ 60
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
N++ AA V+AMPTF+F ++ + L I ++
Sbjct: 61 NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRH 103
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 145 bits (368), Expect = 2e-44
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 9/108 (8%)
Query: 2 SIIVINSDAHFHTEMNNCG--TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59
++I ++ F T M N KLV++DFTASWCGPC+ IAPVF + ++K+P A F KVD
Sbjct: 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVD 66
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
VD+ +D+A A V AMPTF+F ++ + + KI G
Sbjct: 67 VDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMG 114
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 142 bits (361), Expect = 3e-43
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 3 IIVINSDAHFHTEMNNC--GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+I ++ F +M K+V++DFTASWCGPC+ IAPVF + ++K+P A F KVDV
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 75
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYGVGEESG 106
D+ +++A V AMPTF+F ++ + L+ I ++ G S
Sbjct: 76 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 128
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 142 bits (359), Expect = 3e-43
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ ++ S A F + ++ +LV+VDF A WCGPC+RIAP +E+ S+ Y F KVDV
Sbjct: 8 HMVKIVTSQAEFDSIIS--QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 65
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
D+ ++ + +++MPTF ++N + + L+ I++Y
Sbjct: 66 DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 142 bits (360), Expect = 4e-43
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 1 MS-IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59
MS +I + D + + KLVVVDF A+WCGPC+ IAP+F++LS KY +A F KVD
Sbjct: 12 MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVD 70
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
VD+ ++ A +SAMPTFI +N +E IK++
Sbjct: 71 VDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 116
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 141 bits (357), Expect = 6e-43
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVD 61
+ + A ++ KLVV+DF A+WCGPC+ I+P +LS ++ N KVDVD
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 61
Query: 62 QNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
+ +D+A +S+MPTF+F +N + + LE IK
Sbjct: 62 ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKAN 105
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 140 bits (356), Expect = 1e-42
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 3 IIVINSDAHFHTEMN--NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+I ++S + ++ N KLVV+DFTASWCGPC+ +APVF L++K+PNA F KVDV
Sbjct: 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDV 73
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
D+ + +A V AMPTF+F + L AK+ +
Sbjct: 74 DELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAA 120
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 140 bits (356), Expect = 2e-42
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 3 IIVINSDAHFHTEMNNCGT--KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+I ++ ++ ++ LVVVDFTASWCGPC+ IAP F L++K PN F KVD
Sbjct: 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDT 77
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
D+ + +A+ + AMPTF+F + + L++ I ++
Sbjct: 78 DELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 141 bits (356), Expect = 2e-42
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 2 SIIVINSDAHFHTEMNNCGT--KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59
++ +I + + +++ K+V+ +F+A WCGP ++IAP + +LS YP+ F +D
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVID 84
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYGVGEESGE 107
VD+ D +A+ + A PTF F R+ + L KI S +
Sbjct: 85 VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLPPSDK 139
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 139 bits (352), Expect = 4e-42
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 10/109 (9%)
Query: 2 SIIVINSDAHFHTEMNNCGT--KLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKV 58
S+IVI+S A + ++ K +VVDFTA+WCGPC+ IAP+FE LS Y F KV
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
DVD +A A G++AMPTF +++ + + L+A + ++
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 139 bits (351), Expect = 1e-41
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
I + + + ++ +V+ F A WC PC +I F+ Y +DVD
Sbjct: 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQL-NYYYVTLVDIDVDI 80
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP-----------DPNTLEAKIKQYYG 100
+ L + A+PTF F+ N + N +E ++Y
Sbjct: 81 HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCL 129
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 138 bits (349), Expect = 2e-41
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
S++ + S F M+ L V FTA WCGPC+ I E+++ ++P F KVD
Sbjct: 19 PSVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDA 76
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
D N ++ + V +PTFI R+ +P L K++
Sbjct: 77 DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDI 121
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 137 bits (348), Expect = 2e-41
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
+ + + F + + KLVVVDF A+WCGPC+ IAP+ E+ S +YP A F+K+DVD+
Sbjct: 8 VTQFKTASEFDSAIA--QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
D+A VSAMPT + F+N +P ++ I
Sbjct: 66 LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAAN 108
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 136 bits (345), Expect = 6e-41
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 2 SIIVINSDAHFHTEMN--NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVD 59
+I ++ + KL+VVDFTASWC PC+ IAP+F +L++K+PN F KVD
Sbjct: 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVD 64
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
VD+ + +A V AMPTFIF ++ D + L + ++
Sbjct: 65 VDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 135 bits (343), Expect = 9e-41
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
SI + + F + +V+DF A+WCGPC+ + P +L + YP+ F K DV
Sbjct: 12 TSITKLTNLTEFRNLIKQ--NDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDV 69
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQ 97
D++ D+A V+AMPTF+ ++ +P LE IK
Sbjct: 70 DESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIKD 113
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 133 bits (336), Expect = 9e-40
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + + F + G K VV+D WCGP + +AP +E+L+ +Y + F K+D
Sbjct: 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDC 63
Query: 61 DQ-NQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
+Q N+ LA G+ +PTF + + L I+
Sbjct: 64 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 109
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 133 bits (337), Expect = 1e-39
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + + F + G K VV+D WCGPC+ +AP +E+L+ +Y + F K+D
Sbjct: 17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 76
Query: 61 DQ-NQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQY 98
+Q N+ LA G+ +PTF + + L I+
Sbjct: 77 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAA 122
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 132 bits (335), Expect = 2e-39
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP--NAAFFKV 58
S+ VI+S F G K+VV+DF A+WCGPC+ I PVFE++S F+KV
Sbjct: 15 GSVQVISSYDQFKQVTG--GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKV 72
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
DVD+ +A G+ AMPTF+FF+N DP+ L+A I Q+
Sbjct: 73 DVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 130 bits (329), Expect = 1e-38
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 3 IIVINSDAHFHTEMNNC-GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVD 59
+I IN F G KL+V+ F SW PC+ + VFE +S + N +F +D
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP-------DPNTLEAKIKQYYG 100
D+N +++ +SA+P FI DP + ++
Sbjct: 62 ADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKN 109
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 126 bits (318), Expect = 6e-37
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 1 MS--IIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
MS I+ N + + LV+VDF A+WCGPCQR+ + ++ + F K
Sbjct: 1 MSDPIVHFNGTHEALLNRIKE-APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIK 59
Query: 58 VDVDQNQDLAAAQGVSAMPTFIFFRNKIP-----------DPNTLEAKIKQY 98
VDVD+N + A A GVS++P F + + D + ++A I+++
Sbjct: 60 VDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 109 bits (274), Expect = 1e-30
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD 61
+ + T + +LV++ CG C + + Y ++ +
Sbjct: 1 GMNTFKTIEELATYIEE--QQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQ 58
Query: 62 QNQDLAAAQGVSAMPTFIFFRN--------KIPDPNTLEAKIKQYY 99
Q++A V PT + F N + LE I+ +
Sbjct: 59 DMQEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 108 bits (271), Expect = 6e-30
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
MS I + G +V F + C C+ + V ++ + P A VD
Sbjct: 1 MSAIRDITTEAGMAHFE--GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDS 58
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIP--------DPNTLEAKIKQ 97
+ +L G +PT +F R+ +P L+A
Sbjct: 59 EARPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYAS 103
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 99.5 bits (248), Expect = 2e-26
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF--FKVDVDQNQD 65
+ + G ++++ + +L R++P + D++Q++
Sbjct: 23 EASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA 82
Query: 66 LAAAQGVSAMPTFIFFRN--------KIPDPNTLEAKIKQY 98
+ V P + F + I L ++
Sbjct: 83 IGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 123
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 94.4 bits (235), Expect = 2e-24
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
SII D + ++ + K VVV F + C C+ + P FE+ +++Y + A F +++
Sbjct: 6 SSIIEF-EDMTWSQQVED-SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRIN 63
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN-KIPD-------PNTLEAKIKQYYGVGEESGEESGV 111
+ N A GV PTF FF + + P+ L+ ++ GEE +S
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIRKSTP 123
Query: 112 AGHMDLTSFI 121
G D+T ++
Sbjct: 124 VGQ-DITGYV 132
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 92.4 bits (230), Expect = 5e-24
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN 63
++ +F + + + ++ VVDF A WC PC +AP+ E+L+ YP F K++ D+N
Sbjct: 1 VIHLDSKNFDSFLAS--HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDEN 58
Query: 64 QDLAAAQGVSAMPTFIFFRN 83
D+AA GV ++PT IFF++
Sbjct: 59 PDIAARYGVMSLPTVIFFKD 78
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 92.8 bits (231), Expect = 7e-24
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVD 59
+ +V + F E+ L +VDF A WCGPC+ ++P+ E+L+R + KV+
Sbjct: 32 LPWVVEADEKGFAQEVAG--APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVN 89
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD++ LAA GV ++PT + FR
Sbjct: 90 VDEHPGLAARYGVRSVPTLVLFRR 113
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 92.5 bits (230), Expect = 2e-23
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVD 59
++ V D ++VDF A WCGPC+++AP F+ + K+D
Sbjct: 45 ITGKVAGIDPAILARAER-DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKID 103
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTS 119
+ +A + +P FI F G E +G +L
Sbjct: 104 TQAHPAVAGRHRIQGIPAFILFHK------------------GRELARAAGARPASELVG 145
Query: 120 FIMKN 124
F+
Sbjct: 146 FVRGK 150
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 91.3 bits (227), Expect = 2e-23
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVD 59
+ + N ++ +N ++V+ F A WC C + ++L + Y KVD
Sbjct: 24 VPRLQQN-GSNIINGVNM-KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVD 81
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTS 119
+D+N+ LA V ++PT I +N + DL +
Sbjct: 82 LDKNESLARKFSVKSLPTIILLKN------------------KTMLARKDHFVSSNDLIA 123
Query: 120 FIMKN 124
I K+
Sbjct: 124 LIKKH 128
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 91.6 bits (227), Expect = 4e-23
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQ 64
+ S + + K++V+ F C ++ + + S AA + VDVDQ
Sbjct: 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA 67
Query: 65 DLAAAQGVSAMPTFIFFRN 83
+S +P+ +FF N
Sbjct: 68 VYTQYFDISYIPSTVFFFN 86
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 89.7 bits (223), Expect = 7e-23
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
MS+ ++ F + + G K +V F+ C CQ++ PV E+L Y F+ VD
Sbjct: 4 MSLEKLD-TNTFEQLIYDEG-KACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVD 61
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTS 119
V++ + L + +P ++F++ GE G+ +G ++
Sbjct: 62 VEEEKTLFQRFSLKGVPQILYFKD------------------GEYKGKMAGDVEDDEVEQ 103
Query: 120 FIMKN 124
I
Sbjct: 104 MIADV 108
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 89.8 bits (223), Expect = 1e-22
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 5 VINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQN 63
V N + + G K +VDF A WCGPC+ +AP+ ++L+++Y +KVD ++
Sbjct: 23 VYNFEKNPEEWKYE-GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKE 81
Query: 64 QDLAAAQGVSAMPTFIFFRN-KIPDP-------NTLEAKIKQYYGVGEESGEE 108
Q+LA A G+ ++P+ +F P+ + + I ++ E
Sbjct: 82 QELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEGHHHH 134
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 88.2 bits (219), Expect = 3e-22
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-FFKVD 59
+ I F + N VVVDF A WCGPC+ + P E++ K KVD
Sbjct: 12 STTFNIQDGPDFQDRVVN-SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVD 70
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTS 119
+D + DLA VSA+PT + +N G+ + G+ L +
Sbjct: 71 IDDHTDLAIEYEVSAVPTVLAMKN------------------GDVVDKFVGIKDEDQLEA 112
Query: 120 FIMKN 124
F+ K
Sbjct: 113 FLKKL 117
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 89.0 bits (221), Expect = 3e-22
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 21/122 (17%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQ 62
++ + + + +V+DF A WCGPC+ AP+F + + + F KV+ +
Sbjct: 40 VINATAETLDKLLQD--DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 63 NQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIM 122
L+ + ++PT + +RN G+ +G +++
Sbjct: 98 EPALSTRFRIRSIPTIMLYRN------------------GKMIDMLNGAVPKAPFDNWLD 139
Query: 123 KN 124
+
Sbjct: 140 EQ 141
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 88.4 bits (219), Expect = 5e-22
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVD 61
I +D E+ +V+F A+W CQ AP++ LS KY F KVDV
Sbjct: 9 IKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG 68
Query: 62 QNQDLAAAQGVSA------MPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHM 115
+ D++ VS +PT I F+ G+E+ +
Sbjct: 69 RYTDVSTRYKVSTSPLTKQLPTLILFQG------------------GKEAMRRPQIDKKG 110
Query: 116 DLTSFI 121
S+
Sbjct: 111 RAVSWT 116
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 87.3 bits (217), Expect = 5e-22
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
M+I+ +D F E + +V+ DF A WCGP + IAPV E+L ++ + K+D
Sbjct: 1 MAIVKA-TDQSFSAETSE---GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKID 56
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD+NQ+ A GV ++PT + ++
Sbjct: 57 VDENQETAGKYGVMSIPTLLVLKD 80
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 87.0 bits (216), Expect = 6e-22
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
M+I+ + +DA F +++ + + +VDF A+ CGPC+ IAPV E+L+ Y A K+D
Sbjct: 3 MAIVKV-TDADFDSKVES---GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLD 58
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD+N AA V ++PT I F++
Sbjct: 59 VDENPSTAAKYEVMSIPTLIVFKD 82
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 85.8 bits (213), Expect = 1e-21
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
MS+I + +D +F E+ K V+VDF A WCGPC+ IAP+ E+L+++Y KV+
Sbjct: 1 MSVIEV-TDENFEQEVLK-SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVN 58
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD+N + AA G+ ++PT + F+N
Sbjct: 59 VDENPNTAAQYGIRSIPTLLLFKN 82
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 86.3 bits (214), Expect = 2e-21
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKV 58
+ I+ + F+ ++ G VVDF A WCGPCQ AP FE L+R KV
Sbjct: 1 LPQASIDLTPQTFNEKVLQ-GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKV 59
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQ 97
D G+ A P+ ++ + + E +I
Sbjct: 60 DCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINS 98
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 85.9 bits (213), Expect = 2e-21
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
S + +DA F T++ + K V+VDF A+WCGPC+ +APV E+++ + K+D
Sbjct: 11 KSATIKVTDASFATDVLS-SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLD 69
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
VD N + A V ++PT I F++
Sbjct: 70 VDTNPETARNFQVVSIPTLILFKD 93
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 85.4 bits (212), Expect = 3e-21
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVD 59
M + +D F + + V+VDF A WCGPC+ IAPV ++++ +Y + K++
Sbjct: 1 MEAGAV-NDDTFKNVVLES-SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLN 58
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
D++ ++A+ G+ ++PT + F+
Sbjct: 59 TDESPNVASEYGIRSIPTIMVFKG 82
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 84.3 bits (209), Expect = 3e-21
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFI 79
+K+ + FT+ C C V E+++ + P+ ++V +N A G+ A+PT +
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61
Query: 80 FFRNK----IPDPNTLEAKIKQY 98
+ P L IK+
Sbjct: 62 INGDVEFIGAPTKEALVEAIKKR 84
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 85.1 bits (211), Expect = 3e-21
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKV 58
+ + ++ +F + N KLV+VD A WC PC P++++++ KY A F ++
Sbjct: 2 KEDVTLVLTEENFDEVIRN--NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRL 59
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRN 83
+VD+NQ +A V +PT + F N
Sbjct: 60 NVDENQKIADKYSVLNIPTTLIFVN 84
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 85.0 bits (211), Expect = 4e-21
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKV 58
MS VI +DA F +E+ + V+V F ASWCGPCQ ++P+ + Y + K+
Sbjct: 5 MSKGVITITDAEFESEVLK-AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKL 63
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLT 118
++D N V +P + + GV L
Sbjct: 64 EIDPNPTTVKKYKVEGVPALRLVKG------------------EQILDSTEGVISKDKLL 105
Query: 119 SFIMKN 124
SF+ +
Sbjct: 106 SFLDTH 111
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 83.9 bits (208), Expect = 9e-21
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKV 58
M+ + + +D F ++ K V+VDF A+WCGPC++IAP E ++ +Y + K+
Sbjct: 3 MAGTLKHVTDDSFEQDVLK-NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKL 61
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRN 83
++D+N AA GV ++PT ++
Sbjct: 62 NIDENPGTAAKYGVMSIPTLNVYQG 86
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 84.4 bits (209), Expect = 1e-20
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKV 58
S +I+ +D F T++ ++VDF A WCGP + IAP+ ++++ +Y K+
Sbjct: 20 HSDKIIHLTDDSFDTDVLK-ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKL 78
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRN 83
++DQN A G+ +PT + F+N
Sbjct: 79 NIDQNPGTAPKYGIRGIPTLLLFKN 103
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea}
SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 83.5 bits (207), Expect = 1e-20
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQ 62
+ +D+ + + V+VDF A WCGPC+ IAPV ++L+++Y A +K++ D+
Sbjct: 2 VQDVNDSSWKEFVLES-EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
+A + ++PT +FF+N
Sbjct: 61 APGIATQYNIRSIPTVLFFKN 81
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 84.5 bits (209), Expect = 1e-20
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 1 MSIIVINSDAHFHTEMNNC----------GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY 50
I + A F ++ + G K +VDF A WCGPC+ +AP+ E+LS++Y
Sbjct: 22 SGTIHLT-RAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY 80
Query: 51 PN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN-KIPDP-------NTLEAKIKQY 98
+KV+VD+ +LA G+ ++PT F P L+ I +
Sbjct: 81 AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKV 137
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 83.1 bits (206), Expect = 2e-20
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQ 62
+ +D +F + LV+VDF A WC PC+ IAP+ E+++++Y K+DVD+
Sbjct: 3 PIEVTDQNFDETLGQ--HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE 60
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
N A V ++PT I F++
Sbjct: 61 NPKTAMRYRVMSIPTVILFKD 81
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 83.7 bits (207), Expect = 3e-20
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--------PNAAFFKVD 59
+ F + ++ + C C R P Q S++ + + +
Sbjct: 22 TPEEFRQLLQ----GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERE 77
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN-KIPDP-------NTLEAKIKQYYG 100
+ + GV PT +F++ +I D + K ++ YG
Sbjct: 78 LSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase;
1.00A {Acetobacter aceti}
Length = 107
Score = 82.7 bits (205), Expect = 3e-20
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQ 62
+ SD+ F ++ + LV+VDF A WCGPC+ I P ++ +++ KV++D
Sbjct: 4 TLAVSDSSFDQDVLK-ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD 62
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
N + A V ++PT + R+
Sbjct: 63 NPETPNAYQVRSIPTLMLVRD 83
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 82.3 bits (204), Expect = 3e-20
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQ 62
I+ +D F T++ ++VDF A WCGPC+ IAP+ ++++ +Y K+++DQ
Sbjct: 4 IIHLTDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
N A G+ +PT + F+N
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKN 83
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 81.6 bits (202), Expect = 6e-20
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQ 62
+ +DA+F + V+VDF A+WCGPC+ +APV E+ + + + K++VD+
Sbjct: 2 TMTLTDANFQQAIQG--DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
Query: 63 NQDLAAAQGVSAMPTFIFFRN 83
N + + G+ ++PT I F+
Sbjct: 60 NPETTSQFGIMSIPTLILFKG 80
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 84.9 bits (210), Expect = 6e-20
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKV 58
MS +I+ +D F T++ ++VDF A WCGPC+ IAP+ ++++ +Y K+
Sbjct: 10 MSDKIIHLTDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 68
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLT 118
++DQN A G+ +PT + F+N GE + + G L
Sbjct: 69 NIDQNPGTAPKYGIRGIPTLLLFKN------------------GEVAATKVGALSKGQLK 110
Query: 119 SFIMKN 124
F+ N
Sbjct: 111 EFLDAN 116
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 82.1 bits (203), Expect = 7e-20
Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 20/103 (19%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP---NAAFFKVDVDQNQDLAAAQGVSAMPTF 78
++ F C C + +S++ N + +++ ++N DLA + +PT
Sbjct: 27 IPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTT 86
Query: 79 IFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFI 121
+F + G + G+ ++ + +
Sbjct: 87 VFLDKE-----------------GNKFYVHQGLMRKNNIETIL 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 85.6 bits (212), Expect = 1e-19
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 9/164 (5%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVD 59
+ IV ++++ + T V+ F + C ++ P+ E L+ +Y K+D
Sbjct: 6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLD 65
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP--------DPNTLEAKIKQYYGVGEESGEESGV 111
D Q +AA G+ A+PT F+N P + A + EE + +
Sbjct: 66 CDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQAM 125
Query: 112 AGHMDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQ 155
+ + L AET + + E
Sbjct: 126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSED 169
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 77.1 bits (190), Expect = 4e-18
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 8 SDAHFHTEMNNCG-TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL 66
S + E+ N V++ S C + L+RK+P F K V+
Sbjct: 9 SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN---SC 65
Query: 67 AAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
+ +PT ++N ++ G+ E G
Sbjct: 66 IQHYHDNCLPTIFVYKNG--------QIEAKFIGIIECGGIN 99
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 76.0 bits (187), Expect = 1e-17
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 22 KLVVVDFTASWCGPCQRIAPV--FEQLSRKYPNAAF--FKVDVD--QNQDLAAAQGVSAM 75
KL+ VD +WCGPC+R++ V + L Y N F K+D++ + +L GV A
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY 87
Query: 76 PTFIFFR------NKIP---DPNTLEAKIKQY 98
PT +F ++ D L K+K
Sbjct: 88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 78.6 bits (193), Expect = 2e-17
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 2 SIIVINSDAHFHTEMNNCG-TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + S F + +VV C + L+ +YP F K+
Sbjct: 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKA 172
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSF 120
N +PT + ++ + + V E+ EE D+ SF
Sbjct: 173 S-NTGAGDRFSSDVLPTLLVYKGGE--------LLSNFISVTEQLAEEFFTG---DVESF 220
Query: 121 IMKNQCEALNESDQHPFTN 139
+ N+ L E + H
Sbjct: 221 L--NEYGLLPEKEMHVLEQ 237
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 75.7 bits (186), Expect = 2e-17
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 8 SDAHFHTEMNNCG-TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL 66
S + E+ N VV+ S C + L+RK+P F K V+
Sbjct: 16 SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN---SC 72
Query: 67 AAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
+ +PT ++N ++ G+ E G
Sbjct: 73 IEHYHDNCLPTIFVYKNGQI--------EGKFIGIIECGGIN 106
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 73.9 bits (182), Expect = 3e-17
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFR 82
+ FT+ C C V ++ +++ K+D+ +++ A G+ A+P
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAING 63
Query: 83 N----KIPDPNTLEAKIKQY 98
P L I
Sbjct: 64 VVRFVGAPSREELFEAINDE 83
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody,
allergy, IGE, conformational diversity,
multispecficity, redox-active center; 2.77A
{Escherichia coli} SCOP: c.47.1.1
Length = 123
Score = 74.4 bits (183), Expect = 5e-17
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 1 MSIIVIN-SDAHFHTEMNNCGTKLVVVDFTASWCGP--------------CQRIAPVFEQ 45
MS +I+ +D F T++ ++VDF A WCGP C+ IAP+ ++
Sbjct: 1 MSDKIIHLTDDSFDTDVLK-ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDE 59
Query: 46 LSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIFFRN 83
++ +Y K+++DQN A G+ +PT + F+N
Sbjct: 60 IADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 98
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 73.5 bits (181), Expect = 1e-16
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
+++F A WC CQ + P +E + KVDV + L+ ++A+PT
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81
Query: 79 IFFRNKIP 86
++
Sbjct: 82 YHCKDGEF 89
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 72.7 bits (179), Expect = 2e-16
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQN 63
++F + K ++V+F A WCG C+ +AP + + + K KVD +
Sbjct: 13 RKSNFAEALAA--HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 64 QDLAAAQGVSAMPTFIFFRN 83
DLA GV PT FFRN
Sbjct: 71 SDLAQQYGVRGYPTIKFFRN 90
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 72.4 bits (178), Expect = 3e-16
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY-----PNAAFFKVDVDQNQDLAAAQGVSAMP 76
+ +V+F A WCG C+ + P + + + VD NQ LA+ G+ P
Sbjct: 26 DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP 85
Query: 77 TFIFFRN 83
T F+
Sbjct: 86 TIKIFQK 92
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 72.0 bits (177), Expect = 5e-16
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQN 63
+D +F + + V+++F A WCG C++ AP +E+++ P A K+D
Sbjct: 23 NDGNFDNFVAD--KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 64 QDLAAAQGVSAMPTFIFFRNKIP 86
LA+ VS PT +
Sbjct: 81 SMLASKFDVSGYPTIKILKKGQA 103
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 71.3 bits (175), Expect = 7e-16
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80
L +V+F A WCG CQR+ P +++ + V+ D++Q L GV PT
Sbjct: 36 GLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKI 95
Query: 81 FRNKIPDP 88
F P
Sbjct: 96 FGANKNKP 103
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 70.8 bits (174), Expect = 8e-16
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQNQDLAAAQGVSAM 75
+ + F A WCG C+ +AP +E+LS+K +VD +++ + V
Sbjct: 20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 79
Query: 76 PTFIFFRN 83
PT + FR
Sbjct: 80 PTLLLFRG 87
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 70.6 bits (173), Expect = 2e-15
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 6 INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAP-VF--EQLSRKYPNAAFFKVDVDQ 62
I + + + K V++D A WC C+ F Q+ + + + +V
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75
Query: 63 N----QDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYG 100
N L V +PT +FF D E + G
Sbjct: 76 NDAQDVALLKHLNVLGLPTILFF-----DGQGQEHPQARVTG 112
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 70.1 bits (172), Expect = 3e-15
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMPT 77
K V+++F A WCG C+++ P++ L +KY + K+D N V PT
Sbjct: 25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84
Query: 78 FIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKN 124
F P+ + ++ G G E L+ FI ++
Sbjct: 85 IYFA------PSGDKKNPIKFEG-GNRDLE--------HLSKFIDEH 116
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 72.2 bits (177), Expect = 3e-15
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQNQDLAAAQGVSAMP 76
V+++F A WCG C++ AP +E+++ P K+D LA+ VS P
Sbjct: 32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP 91
Query: 77 TFIFFRNKIP 86
T +
Sbjct: 92 TIKILKKGQA 101
Score = 67.9 bits (166), Expect = 1e-13
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSR----KYPNAAFFKVDVDQNQDLAAAQGVSAMPT 77
+++V+F A WCG C+++AP +E+ ++ + P KVD DLA VS PT
Sbjct: 148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT 207
Query: 78 FIFFRN 83
FR
Sbjct: 208 LKIFRK 213
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 69.8 bits (170), Expect = 1e-13
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTFI 79
+ +VDF A W P + + P + S +D ++ L + A PT +
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV 514
Query: 80 FFRNKIP 86
F
Sbjct: 515 VFNQSSI 521
Score = 68.2 bits (166), Expect = 4e-13
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSAMPTF 78
G VVDF A W GP Q AP FE L+R KVD G+ A P+
Sbjct: 674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 733
Query: 79 IFFRNKIPDPNTLE 92
++ + + E
Sbjct: 734 KLYQYERAKKSIWE 747
Score = 63.6 bits (154), Expect = 2e-11
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDV 60
S++ + ++ +VDF + W P Q + P +++++R VD
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDC 603
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLE 92
Q + V P F+ K
Sbjct: 604 GQYHSFCTQENVQRYPEIRFYPQKSSKAYQYH 635
Score = 61.7 bits (149), Expect = 6e-11
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
+L V+F + +AP + + +++ V+ ++ L +GV++ P+
Sbjct: 132 SGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 191
Query: 79 IFFRN 83
FR+
Sbjct: 192 FIFRS 196
Score = 48.2 bits (114), Expect = 2e-06
Identities = 25/228 (10%), Positives = 66/228 (28%), Gaps = 15/228 (6%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMP 76
V + ++C + +L VD D L + +A
Sbjct: 238 TAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTAST 297
Query: 77 TFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKNQCEALNESDQHP 136
T F P + + + +E + +L F + + + + H
Sbjct: 298 TAYFP----PGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHR 353
Query: 137 FTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKIKAPKDKGPK------TLKLFINQ 190
+ + + +D + + + + N+ +++ + +L +F Q
Sbjct: 354 WLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQ 413
Query: 191 PKTLDFDAATSNQSVQQI-ELTEKDLDGTPINLRYVKFQNVQNLQIFV 237
T +++ + + I ++ ++ L F V
Sbjct: 414 -GTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLV 460
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae}
SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 69.1 bits (168), Expect = 2e-13
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVDQNQD 65
+ F+ + + LV+ +F A WCG C+ +AP + + + N ++D +NQD
Sbjct: 20 ATDSFNEYIQS--HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD 77
Query: 66 LAAAQGVSAMPTFIFFRN 83
L + P+ F+N
Sbjct: 78 LCMEHNIPGFPSLKIFKN 95
Score = 59.5 bits (143), Expect = 3e-10
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFF 56
V H E+ N K V+V + A WCG C+R+AP +++L+ Y +
Sbjct: 356 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIA 415
Query: 57 KVDVDQNQDLAAAQGVSAMPTFIFFRN 83
K+D +N + PT + +
Sbjct: 416 KLDHTEND--VRGVVIEGYPTIVLYPG 440
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 66.2 bits (161), Expect = 3e-13
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 10/108 (9%)
Query: 2 SIIVINSDAHFHTEMNNCG-TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + + F + +VV+ C + E L+ +YP F K+
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRA 159
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
+PT + ++ I + V E+ E+
Sbjct: 160 SNT-GAGDRFSSDVLPTLLVYKGG--------ELISNFISVAEQFAED 198
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 66.3 bits (161), Expect = 4e-13
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-----F 55
+S N + N + ++ F C C + + + + A
Sbjct: 114 VSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILG 173
Query: 56 FKVDVDQNQDLAAAQGVSAMPTFIFFRN 83
V+ + + A V A+P + N
Sbjct: 174 DMVEAIEYPEWADQYNVMAVPKIVIQVN 201
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 67.1 bits (163), Expect = 4e-13
Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 23/209 (11%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQ 64
+ F ++N +V+F A WCG C++++ F + +++ A D+++N+
Sbjct: 23 TPKSFDKAIHN-TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 65 DLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMK- 123
L A V+ PT + FR D + K+ + + SG + F +
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFS-AHANEVYSGARTLAPIVDFSLSR 140
Query: 124 -----------NQCEALNESDQHP----FTNCLNTAETYLESDADEQLILSFTFNQSVKI 168
+ +L F+ + Y D + F F
Sbjct: 141 IRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALD--WLGKFDFYSISNK 198
Query: 169 HSLKIKAPKDKGPKTLKLFINQPKTLDFD 197
++ KT ++F K +
Sbjct: 199 KLKQLTDMNPTYEKTPEIFKYLQKVIPEQ 227
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 67.2 bits (163), Expect = 6e-13
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 8 SDAHFHTEMNNCGT-KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF-KVDVDQNQD 65
+D +F + +++ G+ L++V+F A WCG +R+AP +E + + KVD N +
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN 66
Query: 66 LAAAQGVSAMPTFIFFRN 83
GVS PT FR+
Sbjct: 67 TCNKYGVSGYPTLKIFRD 84
Score = 62.6 bits (151), Expect = 3e-11
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQD 65
+F +NN K V+++F A WCG C+ + P +++L K PN K+D N D
Sbjct: 359 AENFDEIVNN-ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-D 416
Query: 66 LAAAQGVSAMPTFIFFRN 83
+ + V PT F
Sbjct: 417 VPSPYEVRGFPTIYFSPA 434
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 66.9 bits (163), Expect = 7e-13
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-------PNAAFFKVDV 60
+ +NN + +V+F A WC Q + P+FE+ S F +VD
Sbjct: 11 DTENIDEILNN--ADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDC 68
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDP 88
DQ+ D+A +S PT FRN +
Sbjct: 69 DQHSDIAQRYRISKYPTLKLFRNGMMMK 96
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 62.7 bits (153), Expect = 9e-13
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 22/110 (20%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY------PNAAFFKVDVDQNQDLAAAQGVSA 74
K V V + W +++ LS ++D ++ D+ VS
Sbjct: 33 EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG 92
Query: 75 MPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKN 124
PT ++ + + +Y G S + SF+ +N
Sbjct: 93 FPTMRYY------TRIDKQEPFEYSGQRYLS----------LVDSFVFQN 126
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 66.6 bits (161), Expect = 1e-12
Identities = 25/183 (13%), Positives = 46/183 (25%), Gaps = 11/183 (6%)
Query: 4 IVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---------PNAA 54
+V S F +V F CG C+R A F + + A
Sbjct: 25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIAT 84
Query: 55 FFKVDVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESG--VA 112
V+ DL ++ +P FF + + E V E+ +
Sbjct: 85 AAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELE 144
Query: 113 GHMDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLK 172
+ ++L E + E ++ + +
Sbjct: 145 SEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVETTELYATDI 204
Query: 173 IKA 175
A
Sbjct: 205 AGA 207
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 65.0 bits (157), Expect = 4e-12
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 17/151 (11%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVDQ--NQDLAAAQGVSA 74
+ V+F ASWCG AP +++L+ P +D + N + ++
Sbjct: 30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89
Query: 75 MPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKNQCEALNESDQ 134
PT FF+ + + + ++ C L +
Sbjct: 90 FPTVRFFQAFTKNGS----GATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAK- 144
Query: 135 HPFTNCLNTAETYLESDADEQLILSFTFNQS 165
LN + + + + L L F S
Sbjct: 145 ------LNDIDGFFTRNKADYLALVFEREDS 169
Score = 31.1 bits (69), Expect = 0.41
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 8 SDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLA 67
+D N +V + S+ G +Y A +V + DL
Sbjct: 146 NDIDGFFTRNKADYLALVFEREDSYLGRE------VTLDLSQYHAVAVRRVL-NTESDLV 198
Query: 68 AAQGVSAMPTFIFFRNK 84
GV+ P+
Sbjct: 199 NKFGVTDFPSCYLLLRN 215
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 59.6 bits (145), Expect = 1e-11
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 22/82 (26%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV--------------------- 60
K V+ F WC C AP Q++ P F +
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNL 84
Query: 61 -DQNQDLAAAQGVSAMPTFIFF 81
D + + A V P F+F+
Sbjct: 85 NDADGVIWARYNVPWQPAFVFY 106
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 61.6 bits (149), Expect = 2e-11
Identities = 27/206 (13%), Positives = 52/206 (25%), Gaps = 25/206 (12%)
Query: 2 SIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFK 57
+ + + V+F ASWCG C AP + L+ P
Sbjct: 12 DPLTLLQADTVRGAVLG-SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 58 VD--VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHM 115
+D + N + + PT FF + + + + +
Sbjct: 71 LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGS----GAVFPVAGADVQTLRERLIDAL 126
Query: 116 DLTSFIMKNQCEALNESDQHPFTNCL-NTAETYL-------ESDADEQLILSFTFNQSVK 167
+ C L + E YL S ++ L + ++ V
Sbjct: 127 ESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKGVA 186
Query: 168 IHSLKIKAP------KDKGPKTLKLF 187
+ + + L
Sbjct: 187 VRRVLNTEANVVRKFGVTDFPSCYLL 212
Score = 43.4 bits (102), Expect = 3e-05
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFI-F 80
+ + + F + +A ++ A +V + ++ GV+ P+
Sbjct: 158 EYLALIFEXGGSYLAREVALDLS----QHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLL 212
Query: 81 FRN----KIPDPNTLEAKIKQY 98
FRN ++P + Y
Sbjct: 213 FRNGSVSRVPVLMESRSFYTAY 234
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 60.2 bits (146), Expect = 2e-11
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 48/124 (38%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV--------------------- 60
+V++ F A+WC C +A + ++L+ KY + +D
Sbjct: 38 DVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDT 97
Query: 61 -------------------DQNQDLAAAQGVSAMPTF--------IFFRNKIPDPNTLEA 93
+ L V ++ + + P LE+
Sbjct: 98 PEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELES 157
Query: 94 KIKQ 97
IK
Sbjct: 158 VIKS 161
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 57.0 bits (138), Expect = 9e-11
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY------PNAAFFKVDVDQNQDLAAAQGVSA 74
TK V+++F A WCG C+ +AP +E+L Y KVD N QG
Sbjct: 25 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGF-- 82
Query: 75 MPTFIFFRN 83
PT +
Sbjct: 83 -PTIKLYPA 90
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 57.3 bits (139), Expect = 1e-10
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 31/107 (28%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-----------------------FKV 58
K V+ F A WC CQ APV Q++ +P F F
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 59 DVDQNQDLAAAQGVSAMPTFIFF--------RNKIPDPNTLEAKIKQ 97
D + + A GV+ P + F + L ++
Sbjct: 86 LADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTA 132
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 57.0 bits (138), Expect = 1e-10
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 22 KLVVVDFTASWCGPCQRIAP-VFEQLS-RKYPNAAFFKVDVD----QNQDLAAAQGVSAM 75
++V+V F + C CQ++ V + A F V + Q+LA V
Sbjct: 20 RMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGT 79
Query: 76 PTFIFFRNK---------IP---DPNTLEAKIKQYYGVGEESGEE 108
PTF+F K + +++Q G GE
Sbjct: 80 PTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGEG 124
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 57.0 bits (137), Expect = 1e-10
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 22 KLVVVDFTAS---WCGPCQRIAPVFEQLSRKYPNA-AFFKVDVDQNQDLAAAQGVSAMPT 77
+VV F +A V +L +P +V + + L A GV+ P+
Sbjct: 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPS 92
Query: 78 FIFFRN--------KIPDPNTLEAKIKQYYGVGEESGEESGVAG 113
+ KI D ++ A+I ++ GE +G
Sbjct: 93 LAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPGEAELQSG 136
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 59.3 bits (143), Expect = 2e-10
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVDQNQDLAAAQGVSAMPT 77
K V V+F A WCG C+++AP++++L Y N K+D N+ A V + PT
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPT 324
Query: 78 FIFFRN 83
FF
Sbjct: 325 LKFFPA 330
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 56.5 bits (137), Expect = 3e-10
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 37/113 (32%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPN---------------------AAF----- 55
K ++ F + C C+ P + KY +
Sbjct: 30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHD 89
Query: 56 --FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKI---PDPNTLEAKIKQ 97
+ VD + L A +P + F R+ LE ++ +
Sbjct: 90 ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 56.6 bits (136), Expect = 3e-10
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 10/100 (10%)
Query: 9 DAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA 68
+ + + ++ WC CQ + R PN + + +D
Sbjct: 42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLR 101
Query: 69 A---QGVSAMPTFIFFRNK-------IPDPNTLEAKIKQY 98
A+P + + + P + Q
Sbjct: 102 QRLALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQA 141
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 56.1 bits (136), Expect = 4e-10
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 35/111 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF------------------------FK 57
+V +DF ASWCGPC++ P Q+ KY F F
Sbjct: 29 SVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFT 88
Query: 58 VDVDQNQDLAAAQGVSAMP-TFIFFRN-KI---------PDPNTLEAKIKQ 97
V D GV MP +F+ RN K+ D LE +I
Sbjct: 89 VAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILA 139
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 58.2 bits (140), Expect = 6e-10
Identities = 9/74 (12%), Positives = 16/74 (21%), Gaps = 9/74 (12%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAA---------FFKVDVDQNQDLAAAQGVSA 74
V+ + + F+ A F VD + LA G
Sbjct: 30 VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDE 89
Query: 75 MPTFIFFRNKIPDP 88
+ +
Sbjct: 90 EGSLYVLKGDRTIE 103
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 55.0 bits (133), Expect = 1e-09
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 43/137 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF---------------------FKVDV 60
K+V+V+F ASWC C+ P ++L + +P F
Sbjct: 42 KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLS 101
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESG-VAGHMDLTS 119
D + G + +P D G V G ++ +
Sbjct: 102 DATGQVQQRYGANRLPDTFIV-----DRK----------------GIIRQRVTGGIEWDA 140
Query: 120 FIMKNQCEALNESDQHP 136
+ + ++L H
Sbjct: 141 PKVVSYLKSLEGHHHHH 157
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 54.3 bits (131), Expect = 1e-09
Identities = 8/110 (7%), Positives = 21/110 (19%), Gaps = 34/110 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
+ +++F A++ + K+
Sbjct: 33 RYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLS 92
Query: 56 --FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQ 97
F + + +L + P L +K
Sbjct: 93 TQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVTPEKLTEILKA 142
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 54.6 bits (132), Expect = 1e-09
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 34/112 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK---VDVDQNQD------------- 65
+ ++++F ASWC P ++L+++Y F + +D +++
Sbjct: 34 RYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSW 93
Query: 66 ------------LAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQYY 99
A + +PT I + L K+K+
Sbjct: 94 DQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQGEALTGKLKELL 145
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 54.2 bits (131), Expect = 1e-09
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 36/114 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
+ ++ F SWC PC++ P F+ +P+ +
Sbjct: 35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL 94
Query: 56 -FKVDVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
F + +D +L + +PT + + +I++ +G + E+
Sbjct: 95 TFPIVLDSKGELMKEYHIITIPTSFLL-----NE---KGEIEKTK-IGPMTAEQ 139
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 54.7 bits (132), Expect = 2e-09
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 36/114 (31%)
Query: 22 KLVVVDFTASWCGPCQRIA--PVFEQLSRKYPNAAFFK---VDVDQNQ------------ 64
K ++++F ASW + ++ +KY + + +D ++
Sbjct: 34 KSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTL 93
Query: 65 -------------DLAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQYY 99
++A + +P I K L+ KI+
Sbjct: 94 DWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLRGEELKKKIENIV 147
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 54.6 bits (132), Expect = 2e-09
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 34/110 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------F 56
K+ +++F C C P + + Y N F F
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPF 88
Query: 57 KVDVDQNQDLAAAQGVSAMPTFIFF------RNKI---PDPNTLEAKIKQ 97
V D ++ + A G PT + PD L +I
Sbjct: 89 TVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDT 138
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 54.6 bits (132), Expect = 2e-09
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 33/110 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
K V+VDF + C C++ P + + + F
Sbjct: 30 KYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWN 89
Query: 56 -FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQY 98
+ D +D+ + + P I K + L ++++
Sbjct: 90 QVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKF 139
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 54.1 bits (130), Expect = 2e-09
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF---KVDV---DQNQDLAAAQGVSAM 75
K ++ F A+WC C+ + A F K+DV D+N +L+ A G
Sbjct: 30 KPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQ 89
Query: 76 ---PTFIFF 81
P +
Sbjct: 90 DGIPAVVVV 98
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 54.2 bits (131), Expect = 2e-09
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF------------------------FK 57
K V ++F +WC PC++ P + + + F
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 58 VDVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
V +D ++ + A VS +PT +P E K+ + G +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLI-----NP---EGKVVKVV-TGTMTESM 128
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 56.1 bits (135), Expect = 3e-09
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 38/114 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
K+V++DF A C CQR P + Y ++
Sbjct: 83 KVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANL 142
Query: 56 ---FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKI---PDPNTLEAKIKQ 97
+ + +D N P R+ D N E ++Q
Sbjct: 143 GISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQ 196
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 54.0 bits (130), Expect = 3e-09
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 39/116 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
K ++ F ASWC C E+ ++ ++
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGL 98
Query: 56 ----FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKIP---DPNTLEAKIKQY 98
V D +A +S P++ + + + A I+
Sbjct: 99 NYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 53.5 bits (129), Expect = 4e-09
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 34/113 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------F 56
K + +D A+WCGPC+ P ++L KY
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGI 90
Query: 57 KVDVDQNQDLAAAQGVSAMPTFIFF-RN-KI-------PDPNTLEAKIKQYYG 100
++ + ++ A ++ +P FI R+ KI P K + G
Sbjct: 91 QLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLG 143
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 53.0 bits (128), Expect = 4e-09
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 38/114 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------- 55
K V + F ASWC C P ++++++ +
Sbjct: 23 KKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLD 82
Query: 56 ---FKVDVDQNQDLAAAQGVSAMPTFIFF------RNKIP---DPNTLEAKIKQ 97
V VD + L GV + PT F P + + + +K+
Sbjct: 83 YKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 53.5 bits (129), Expect = 4e-09
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 31/108 (28%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF--FKVDVDQNQD-------------- 65
K+V++DFT +L KY + F +++ +D ++
Sbjct: 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCV 95
Query: 66 ---------LAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQY 98
+ V+ +P+ + + L+ IK+
Sbjct: 96 RDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEAIKKL 143
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 53.5 bits (128), Expect = 4e-09
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF---KVDVDQNQDLAA-AQGVSAMPT 77
++V SWCG C+ + P F + + + F ++ ++ + +P
Sbjct: 47 LPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPR 106
Query: 78 FIFF 81
+F
Sbjct: 107 ILFL 110
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 53.1 bits (128), Expect = 4e-09
Identities = 18/111 (16%), Positives = 26/111 (23%), Gaps = 33/111 (29%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-----------------AAFFK------- 57
K ++ F S CG CQ+ P K F +
Sbjct: 32 KYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGW 91
Query: 58 ---VDVDQNQDLAAAQGVSAMPTFIFF------RNKIPDPNTLEAKIKQYY 99
D + D + A P K L+ + QY
Sbjct: 92 LNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYE 142
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 55.4 bits (133), Expect = 5e-09
Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 3 IIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPC------QRIAPVFEQLSR--KYPNAA 54
+I +N ++ +++ + + + + E ++ +
Sbjct: 15 VINVN-AKNYKNVFKK--YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
Query: 55 FFKVDVDQNQDLAAAQGVSAMPTFIFFRNKIP 86
F VD +++ +A G++ + F+
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV 103
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 52.4 bits (126), Expect = 7e-09
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 34/110 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV----------------------- 58
KLV F+ASWC P + P + K+ + F+V
Sbjct: 29 KLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLA 88
Query: 59 ----DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEE 104
+ Q L+ V ++PT I D ++ +
Sbjct: 89 VPFAQSEAVQKLSKHFNVESIPTLIGV-----DADS--GDVVTTRARATL 131
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 52.3 bits (126), Expect = 7e-09
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK---VDVDQNQDLAAAQGVSAMPTF 78
K V + F+ASWC PC+ PV + K+ A F+ + D+N+ MP
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENES-DFHDYYGKMPWL 87
Query: 79 IFFRNKIPDPNTLEAKIKQYYGV 101
D + +++ + +GV
Sbjct: 88 AL----PFDQRSTVSELGKTFGV 106
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 52.1 bits (124), Expect = 1e-08
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 1 MSIIV--INSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFK 57
S ++ +NS + N +LV + F + C ++ + +++ N +
Sbjct: 19 SSFMLQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYL 78
Query: 58 VDVDQNQDLAAAQGVSAMPTFIFFRN 83
VD+ + D + + +FF
Sbjct: 79 VDITEVPDFNTMYELYDPVSVMFFYR 104
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 52.4 bits (126), Expect = 1e-08
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 40/131 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ----------- 70
K +V+F A+WC PC+ P Q+ + + + F V + N+ L +
Sbjct: 35 KAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYP 94
Query: 71 ------------------GVSAMP-TFIFFRN-KI-------PDPNTLEAKIKQYYGVGE 103
G++ +P +F+ + + + +K +G
Sbjct: 95 VMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA--LGA 152
Query: 104 ESGEESGVAGH 114
++ + G H
Sbjct: 153 KAATKEGHHHH 163
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 51.2 bits (122), Expect = 1e-08
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 22/107 (20%)
Query: 12 FHTEMNNCGTKLVVVDFTAS-------WCGPCQRIAPVFEQLSRKYP-NAAFFKVDV--- 60
FH + K + FT S WC C + PV + + F V
Sbjct: 15 FHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEK 74
Query: 61 ----DQNQDLAAAQGVSAMPTFIFFRN-------KIPDPNTLEAKIK 96
D N D V+A+PT + + + N +E
Sbjct: 75 PYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 121
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 32/96 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV----------------------- 58
K V F+ASWC PC+ P + K+ ++ F++
Sbjct: 49 KTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLS 108
Query: 59 ----DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNT 90
+ + + L V ++PT I + +T
Sbjct: 109 IPFANRNIVEALTKKYSVESIPTLIGL-----NADT 139
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 32/96 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKV----------------------- 58
K V F+ASWC P + P + + F+V
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLA 88
Query: 59 ----DVDQNQDLAAAQGVSAMPTFIFFRNKIPDPNT 90
D + L V ++PT + + ++
Sbjct: 89 LPFEDRKGMEFLTTGFDVKSIPTLVGV-----EADS 119
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 51.2 bits (123), Expect = 2e-08
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 25/85 (29%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAF-------------------------F 56
++V+V+F A+WC PC+ P +L+ F
Sbjct: 29 QVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTL 88
Query: 57 KVDVDQNQDLAAAQGVSAMPTFIFF 81
V +D ++ + G + +P
Sbjct: 89 PVLLDADKRVGKLYGTTGVPETFVI 113
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 51.3 bits (123), Expect = 2e-08
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNA--AFFKVDVDQNQDLAA 68
+ +V+ A+WCGPC++ P + + + +D + ++
Sbjct: 25 PVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGN 73
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 51.2 bits (122), Expect = 6e-08
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPT 77
+ + F + CG C A + + +D +NQDLA V +P
Sbjct: 133 VVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPK 192
Query: 78 FIF 80
+
Sbjct: 193 IVI 195
Score = 49.3 bits (117), Expect = 2e-07
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 23 LVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA------FFKVDVDQNQDLAAAQGVSAMP 76
+ + A C CQ + ++ A +++ GV +P
Sbjct: 24 SIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVP 83
Query: 77 TFIFFRNK--------IPDPNTLEAKIKQYYGVGEESGEES 109
T + +K +P I + V + + S
Sbjct: 84 TIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLS 124
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 48.9 bits (116), Expect = 7e-08
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 11 HFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAA-----FFKVDVDQNQD 65
H H ++ +L ++ F C C R ++
Sbjct: 8 HHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPG 67
Query: 66 LAAAQGVSAMPTFIFFRNK 84
L A+ V+ PTF+
Sbjct: 68 LELARPVTFTPTFVLMAGD 86
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 49.6 bits (119), Expect = 8e-08
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVDQNQDLAAAQ 70
K+V++ FTASWCG C++ P E+ NA F + +D+++ L
Sbjct: 34 KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 49.3 bits (117), Expect = 1e-07
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFF--KVDVDQNQDLAAAQGVSAMPT 77
+V++ + +L ++P+ + D++Q++ + G P
Sbjct: 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPA 94
Query: 78 FIFFRN 83
+ F
Sbjct: 95 TLVFTG 100
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 48.9 bits (117), Expect = 1e-07
Identities = 14/114 (12%), Positives = 27/114 (23%), Gaps = 35/114 (30%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQ---LSRKYPNAAF----------------------- 55
+ ++ F C C++ +F + N
Sbjct: 28 QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQ 87
Query: 56 -FKVDVDQNQDLAAAQ--GVSAMPTFIFF------RNKIPDPNTLEAKIKQYYG 100
+ V ++ D+ Q + A PT K L + G
Sbjct: 88 GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTSMEQLIDYLATQAG 141
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 50.8 bits (121), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY---PNAAFFKVDVD-----QNQDLAAAQG 71
+K V+V F + ++ F++L+ + +V + N +L+
Sbjct: 21 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK 78
Query: 72 VSAM--PTFIFFRN 83
+ P F FR+
Sbjct: 79 LDKESYPVFYLFRD 92
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 48.2 bits (115), Expect = 2e-07
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFK---VDVDQNQDLAAAQGVSAMPT 77
++ F+A WC PC+ P+ + + ++A F+ V D+++D M
Sbjct: 27 DIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSED--------DMFQ 78
Query: 78 FIFFRNK----IPDPNTLEAKIKQYYGV 101
++ + IP + + + YG+
Sbjct: 79 YMMESHGDWLAIPYRSGPASNVTAKYGI 106
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 47.3 bits (113), Expect = 6e-07
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 27/85 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY--------------PNAA------------F 55
K V+ F ASWC C+ P +++ +
Sbjct: 31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPL 90
Query: 56 FKVDVDQNQDLAAAQGVSAMP-TFI 79
D D+ ++AA V P TF+
Sbjct: 91 LASDRDRPHEVAARFKVLGQPWTFV 115
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 47.1 bits (112), Expect = 9e-07
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY--------PNAAFFKVDVDQNQDLAAAQ 70
++V+++ WC PC+ + + + + P ++V AQ
Sbjct: 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY-SRDIAQ 115
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 47.6 bits (113), Expect = 1e-06
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-PNAAFFKVDVDQNQDLAAAQGVSAMPTF 78
+L V+F + C C +AP + + +++ V+ ++ L +GV++ P+
Sbjct: 113 SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172
Query: 79 IFFRN 83
FR+
Sbjct: 173 FIFRS 177
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 46.3 bits (110), Expect = 1e-06
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 22 KLVVVDFTASWCGPC-QRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80
K++V++ C C P+ +++ +P + + + A ++ F+
Sbjct: 29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFL- 87
Query: 81 FRNKI-------PDPNTLEAKIKQYYGV 101
+I + + Y +
Sbjct: 88 HEYRIKFPVGVDQPGDGAMPRTMAAYQM 115
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 46.2 bits (110), Expect = 1e-06
Identities = 8/111 (7%), Positives = 23/111 (20%), Gaps = 35/111 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQ---LSRKYPNAAF----------------------- 55
+ ++ C C + + ++
Sbjct: 32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAK 91
Query: 56 -FKVDVDQNQDLAAAQ--GVSAMPTFIFF------RNKIPDPNTLEAKIKQ 97
+ D+ + + A+PT K +E + +
Sbjct: 92 EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDATLQKVEQYLAE 142
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 45.4 bits (107), Expect = 3e-06
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLS--RKYPNAAFFKVDVDQN-QDLAAAQGVSAMPTF 78
K ++V C Q + VF Q ++ F +++ D + +P
Sbjct: 45 KPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRI 104
Query: 79 IFFR 82
+F
Sbjct: 105 MFVD 108
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 45.5 bits (108), Expect = 4e-06
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 37/117 (31%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY--PNAAFFKVDVDQN---------------- 63
K ++V+ A+WC PC++ P ++L K PN +++D
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR 120
Query: 64 ------------QDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEE 108
QDL A MPT + DP E I G E + E+
Sbjct: 121 LGYFNDQKAKVFQDLKAIGRALGMPTSVLV-----DPQGCE--IATIAGPAEWASED 170
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 44.4 bits (105), Expect = 6e-06
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 22 KLVVVDFTASWCGPC-QRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIF 80
K+VVV+ C C P +++ R + + + + A+ FI
Sbjct: 31 KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFI- 89
Query: 81 FRNKIP-----DPN---TLEAKIKQYYGV 101
I D + Y +
Sbjct: 90 DEFGIKFPVAVDMPREGQRIPSTMKKYRL 118
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 44.1 bits (104), Expect = 8e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 16/76 (21%)
Query: 22 KLVVVDFTAS-WCGPCQRIAP-VFEQLS-RKYPNAAF--FKVDVD-----------QNQD 65
K + + FT S WC C ++ + + + + +VD +NQ+
Sbjct: 48 KPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQE 107
Query: 66 LAAAQGVSAMPTFIFF 81
L A V+ P +F
Sbjct: 108 LKAQYKVTGFPELVFI 123
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 42.6 bits (100), Expect = 1e-05
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ------GVSAMPT 77
C C++ A + + A + ++ ++ L Q G+ +P
Sbjct: 32 ATFFIGRKTCPYCRKFAGTLSGVVAET-KAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG 90
Query: 78 FIFFRN 83
F+ +
Sbjct: 91 FVHITD 96
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 43.9 bits (103), Expect = 2e-05
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 22/115 (19%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKY----PNAAFFKVDVD-----QNQDLAAAQ 70
VV F + P F S+ + V V +N+ L
Sbjct: 32 RFPYSVVKFDIAS--PYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY 89
Query: 71 GVSAM--PTFIFFRNKIPDPNTL-------EAKIKQYYGVGEESGEESGVAGHMD 116
V P+ F+ + L +K + V + G G +
Sbjct: 90 KVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAF--VSANTPLYIGRDGCIK 142
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 42.3 bits (99), Expect = 4e-05
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 24 VVVDFTASW-------CGPCQRIAPVFEQLSR----KYP--NAAFFKVDVDQNQDLAAAQ 70
++ T C C + ++ + P FF VDV++ L
Sbjct: 40 NILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL 99
Query: 71 GVSAMPTFIFFR-NKIPDPNTLEAKIKQYY 99
+ +P + + + + E K +Y
Sbjct: 100 KLQNVPHLVVYPPAESNKQSQFEWKTSPFY 129
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens}
SCOP: b.18.1.9
Length = 171
Score = 41.9 bits (98), Expect = 6e-05
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 142 NTAETYLESDADEQLILSFTFNQSVKIHSLKI--KAPKDKGPKTLKLFINQPKTLDFDAA 199
+ ETY +SD + +++ F + + +L I D+ P +
Sbjct: 47 DNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDES--------YTPSKISVRVG 98
Query: 200 TSNQSVQQIELTEKDL----DGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALI 255
+ ++Q+I E P+ + K +QI VL N T + + +
Sbjct: 99 NNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIY 158
Query: 256 GSPILTTKMSDFKR 269
P+ + + F R
Sbjct: 159 T-PVEESSIGKFPR 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 8e-05
Identities = 46/313 (14%), Positives = 83/313 (26%), Gaps = 126/313 (40%)
Query: 3 IIVINSDAHF----------HTEMNN-------CGTKLVVVDFTA---SWCGPCQRIAPV 42
+I + AH+ E+ + LV A SW
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW--------ES 291
Query: 43 FEQLSRKYPNAAFF------------KVDVDQNQD-LAAAQGVSAMPTFIF-FRNKIPDP 88
F RK FF + +D L +GV P+ + N
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV---PSPMLSISN--LTQ 346
Query: 89 NTLEAKIKQYYGVGEESGEES--------G-----VAGH-MDLTSFIM---KNQCEALNE 131
++ + + G V+G L + K + +
Sbjct: 347 EQVQDYVNK---TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--G 401
Query: 132 SDQH--------------------PF-TNCLNTAETYLESDADEQLILSFTFNQSVKIHS 170
DQ PF ++ L A + D + + +FN
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN---NVSFNAK----D 454
Query: 171 LKIKAP-------KD----KGPKTLKLF---INQPKTLDFDAATSNQS----------VQ 206
++I P D G + ++ I P + ++ T ++
Sbjct: 455 IQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLP--VKWETTTQFKATHILDFGPGGAS 510
Query: 207 QI-ELTEKDLDGT 218
+ LT ++ DGT
Sbjct: 511 GLGVLTHRNKDGT 523
Score = 33.9 bits (77), Expect = 0.073
Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 59/160 (36%)
Query: 76 PTFIF---------FRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTS----FIM 122
PT F F +P+P A ++ E + A +L ++
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFA--------ADD--EPTTPA---ELVGKFLGYVS 69
Query: 123 KNQCEALNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKIKAPKDKGPK 182
+ S F LN T E+ + + IH+L K ++
Sbjct: 70 ----SLVEPSKVGQFDQVLNLCLTEFEN----------CYLEGNDIHALAAKLLQENDTT 115
Query: 183 TLK------------LFINQPKT------LDFDAATSNQS 204
+K + +P L F A +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNA 154
Score = 30.0 bits (67), Expect = 1.2
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 70/171 (40%)
Query: 103 EESG---EESGVAGHMDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQLILS 159
+ G ++ AGH S L E A L S AD
Sbjct: 1748 KSKGLIPADATFAGH----S---------LGE----------YAA---LASLAD-----V 1776
Query: 160 FTFNQSVKI-----HSLKIKAPKDKG-----------PKTLKLFINQ---PKTLDFDAAT 200
+ V++ ++++ P+D+ P + +Q ++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 201 SNQSV---------QQI----ELTEKDLDGTPIN-LRYVKFQNVQNLQIFV 237
+ V QQ +L + LD T N L ++K Q + +++
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDL--RALD-TVTNVLNFIKLQKIDIIELQK 1884
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 41.9 bits (97), Expect = 9e-05
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 3/116 (2%)
Query: 1 MSIIVINSDAHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ + + + ++ + A WC CQ +F + P
Sbjct: 177 VYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGP 236
Query: 61 DQNQ-DLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGV-GEESGEESGVAGH 114
Q G+++ PT+I +LE + G EE E H
Sbjct: 237 GTPQAQECTEAGITSYPTWIINGRTYTGVRSLE-ALAVASGYPLEEGRLEHHHHHH 291
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 39.2 bits (92), Expect = 4e-04
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 22/86 (25%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRK--------Y---PNAA----------FFKVDV 60
K +V+ +WC C+ P +L+ + Y AA +
Sbjct: 59 KPALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSIS 118
Query: 61 DQNQDLAAAQGVSAMP-TFIFFRNKI 85
D + L GV P T++ + I
Sbjct: 119 DADGTLGLDLGVYGAPETYLIDKQGI 144
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 38.7 bits (90), Expect = 5e-04
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 32/111 (28%)
Query: 22 KLVVVDFTASWCGPCQRI-------APVFEQLSRKYPNAAFFKVDVD--QNQDLAAAQGV 72
K ++++ CQ + V + + F++V D + Q +
Sbjct: 43 KWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHF---IFWQVYHDSEEGQRYIQFYKL 99
Query: 73 SAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMK 123
P DP T G++ +D++SF+ +
Sbjct: 100 GDFPYVSIL-----DPRT---------------GQKLVEWHQLDVSSFLDQ 130
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 39.4 bits (91), Expect = 7e-04
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 18 NCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKY-----PNAAFFKVDVDQNQDLAAAQGV 72
+ ++ + C C + + + P V+ +N D+A GV
Sbjct: 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGV 194
Query: 73 SAMPTFIF 80
++P+
Sbjct: 195 MSVPSIAI 202
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 38.0 bits (89), Expect = 0.001
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 23/87 (26%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKY------------PNAA----------FFKVD 59
K+ +V+ ASWC PC AP+ +L + + A F +V
Sbjct: 43 KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVG 102
Query: 60 VDQNQDLAAAQGVSAMP-TFIFFRNKI 85
VD N + GV +P TF+ R
Sbjct: 103 VDANGRASIEWGVYGVPETFVVGREGT 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 164 QSVK-IH-SLKIKAPKDKGPKTLKLFINQPKTLD 195
Q++K + SLK+ A D P L I T++
Sbjct: 20 QALKKLQASLKLYAD-DSAP---ALAIK--ATME 47
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 37.7 bits (88), Expect = 0.001
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 22/86 (25%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRK--------Y---PNAA----------FFKVDV 60
K V+++ A+WC C+ QLS + Y A +
Sbjct: 52 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF 111
Query: 61 DQNQDLAAAQGVSAMP-TFIFFRNKI 85
D + L GV P TF+ N I
Sbjct: 112 DGDGMLGLDLGVYGAPETFLIDGNGI 137
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 35.5 bits (82), Expect = 0.003
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 12 FHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA 69
F MNN +V + C C+ + L +K +++D N+ L
Sbjct: 19 FQGHMNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRL 75
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 34.7 bits (79), Expect = 0.006
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 19 CGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQ-DLAAAQGVSAMPT 77
++ + A WC CQ +F + P Q G+++ PT
Sbjct: 10 HLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPT 69
Query: 78 FIFFRNKIPDPNTLEA 93
+I +LEA
Sbjct: 70 WIINGRTYTGVRSLEA 85
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 33.1 bits (76), Expect = 0.020
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAM--------- 75
V+ + S C C++ + L+ F V VD+ + + V +
Sbjct: 24 VIMYGLSTCVWCKK---TKKLLTDL--GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF 78
Query: 76 PTFIFFRNKI---PDPNTLEAKI 95
PT I K + +
Sbjct: 79 PTTIINDEKAIVGFKEKEIRESL 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.049
Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 52/201 (25%)
Query: 79 IFFRNKIPDPN--TLEAKIKQYYGVGEESGEESGVAGHMD--LTSFIMKNQCEALNESDQ 134
I+ K+ N L I +Y + + + + ++D S I
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----------H 479
Query: 135 HPFTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKIKAPKDKGPKTLKLFINQPKTL 194
H L E + L F F L+ K I T
Sbjct: 480 H-----LKNIEHPERMTLFRMVFLDFRF--------LEQK-------------IRHDSTA 513
Query: 195 DFDAATSNQSVQQIELTEKDL-DGTPINLRYVKFQNVQNLQIFVL---DNQTEAETTVIT 250
+ + ++QQ++ + + D P R V + F+ +N ++ T +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDFLPKIEENLICSKYTDLL 568
Query: 251 HLALI--GSPILTTKMSDFKR 269
+AL+ I +R
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589
Score = 32.5 bits (73), Expect = 0.16
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 61/252 (24%)
Query: 16 MNNCGTKLVVV-------------DFTASW--CGPCQRIAPVFEQLSRKYPNAAFFKVDV 60
+ G K V DF W C V E L + +
Sbjct: 158 VLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-------YQI 209
Query: 61 DQNQDLAAAQGVSAMPTFIFFRNKIPDP-NTLEAKIKQYYGVGEESGEES-----GVAGH 114
D N I ++++A++++ + + E V
Sbjct: 210 DPNWT----SRSDHSSN-------IKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNA 256
Query: 115 MDLTSFIMKNQCEALNESDQHPFTNCLNTAETYLESDADEQLILSFTFNQSVKIHSLKIK 174
+F C+ L + T+ L+ A T S + ++ T ++ + +
Sbjct: 257 KAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLD 312
Query: 175 APKDKGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDGTPINLRYVKFQNVQN-L 233
P+ + N P+ L A + +D T N ++V + +
Sbjct: 313 CRPQDLPREVLT-TN-PRRLSIIAE---------SI--RDGLATWDNWKHVNCDKLTTII 359
Query: 234 QIFVLDNQTEAE 245
+ L+ AE
Sbjct: 360 ESS-LNVLEPAE 370
Score = 32.1 bits (72), Expect = 0.22
Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 40/159 (25%)
Query: 114 HMDLTSFIMKNQCEALNESDQHPFT---NC----------LNTAET---YLESDADEQLI 157
HMD + + Q + + + F +C L+ E + DA +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 158 LSFTFNQSVKIHSLKIKAPKDKGPKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLDG 217
F +L K + ++ F+ + +++ S + +
Sbjct: 66 RLFW--------TL-----LSKQEEMVQKFVEEVLRINYKFLMS-------PIKTEQRQP 105
Query: 218 TPINLRYVKFQNV--QNLQIFVLDNQT--EAETTVITHL 252
+ + Y++ ++ + Q+F N + + + L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Score = 29.8 bits (66), Expect = 1.3
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 38/131 (29%)
Query: 45 QLSRKYPNAAFFKVDVDQ-----------NQDLAAAQGVSAMPTFIFFRNKIPDPNTLEA 93
+ + + + +DQ N + FR D LE
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--------RMTLFRMVFLDFRFLEQ 505
Query: 94 KIKQYYGVGEESGEESGVAGHM-DLT---SFIMKNQCEALNESDQHP-FTNCLNTAETYL 148
KI+ + + L +I D P + +N +L
Sbjct: 506 KIRH---DSTAWNASGSILNTLQQLKFYKPYI----------CDNDPKYERLVNAILDFL 552
Query: 149 ESDADEQLILS 159
+E LI S
Sbjct: 553 PK-IEENLICS 562
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 32.0 bits (72), Expect = 0.13
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 22 KLVVVDFTASWCGPCQRI-------APVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSA 74
K V++DFT C C+++ V ++ Y + VD L +
Sbjct: 48 KPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDY---VLITLYVDNKTPLTEPVKIME 104
Query: 75 MPTFIFFRN 83
T R
Sbjct: 105 NGTERTLRT 113
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 31.1 bits (71), Expect = 0.14
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
VV F+ ++CG C R+ + Q+ A++ V++D+ D + Q
Sbjct: 22 VVVFSKTYCGYCNRVKQLLTQV-----GASYKVVELDELSDGSQLQ 62
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription;
1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Length = 142
Score = 31.2 bits (70), Expect = 0.16
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPN-AAFFKVDVDQNQDLAAAQGVSAMPTFIF 80
++VV+ F W C ++ V ++ K N A + VD+ + D + T +F
Sbjct: 24 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMF 83
Query: 81 F-RNK 84
F RNK
Sbjct: 84 FFRNK 88
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 30.7 bits (69), Expect = 0.30
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
K+ V++F A C C I P+ E ++ P K
Sbjct: 26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLK 61
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 30.0 bits (67), Expect = 0.49
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKI----PDPNTLEAKIKQ 97
V + L G + PT +F + LE I++
Sbjct: 95 VAETTSLGEQFGFNGTPTLVFPNGRTQSGYSPMPQLEEIIRK 136
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 29.9 bits (67), Expect = 0.70
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRN 83
A G+S P +
Sbjct: 162 TLAGFQRVAQWGISGFPALVVESG 185
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 29.9 bits (66), Expect = 0.71
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 27 DFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTFIFFRNKI- 85
A W + + E P V ++ +L GV P+ + ++
Sbjct: 135 QMEAIWTAK-DPVFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTSTGELI 193
Query: 86 ---PDPNTLEAKIKQ 97
P L +++
Sbjct: 194 GGYLKPADLLRALEE 208
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 29.8 bits (66), Expect = 0.77
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 59 DVDQNQDLAAAQGVSAMPTFIFFRNKI----PDPNTLEAKIKQ 97
D+ + L GVS P + + P ++ + +
Sbjct: 166 DIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDE 208
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 28.0 bits (63), Expect = 0.91
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA---AQGVSAMPTFIF 80
+ + +T C C + L R A+ VD+ + + A G P +
Sbjct: 3 ITL-YTKPACVQCTA---TKKALDRA--GLAYNTVDISLDDEARDYVMALGYVQAPV-VE 55
Query: 81 FRNKI 85
+
Sbjct: 56 VDGEH 60
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 28.0 bits (63), Expect = 0.92
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAA---AQGVSAMPTFIF 80
+ + +T + C C + + F ++VD+ + A AQG +P I
Sbjct: 3 ITI-YTRNDCVQCHA---TKRAMENR--GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA 56
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
V + F C C+ + + S K A+ VD+ + + +
Sbjct: 21 VTI-FVKYTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELR 64
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
K+ V++F +C C P+ +L + P+ A+ +
Sbjct: 23 KIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLR 58
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 29.0 bits (64), Expect = 1.3
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
K+ VV+ C C P S K P F
Sbjct: 26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFV 61
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 28.9 bits (64), Expect = 1.3
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYP-NAAFFKVDVDQNQDLAAAQGVSA 74
K+ VV+ C C + + + F V
Sbjct: 26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYL 79
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 29.0 bits (64), Expect = 1.3
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 22 KLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
K+ V++F +C C + PV + ++ + + + +
Sbjct: 25 KVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLR 60
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA 69
V+ +T C C R + + A F ++D +L A
Sbjct: 8 VIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAE 47
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 27.6 bits (62), Expect = 1.5
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA 69
V F S C C R + E+LS + + + VD+
Sbjct: 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED 47
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 27.1 bits (61), Expect = 1.7
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAA 69
V +T C C R A LS K +F ++ +D N
Sbjct: 3 VEIYTKETCPYCHR-AKAL--LSSK--GVSFQELPIDGNAAKREE 42
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 28.4 bits (63), Expect = 1.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIPDPNTLEAKIKQYYGVGEE 104
LA + GV++ P+ + N P I+ Y E
Sbjct: 155 FQDQLSLAKSLGVNSYPSLVLQINDAYFP------IEVDYLSTEP 193
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination,
E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A
{Saccharomyces cerevisiae} SCOP: b.18.1.9
Length = 221
Score = 28.5 bits (63), Expect = 1.8
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 22/126 (17%)
Query: 142 NTAETYLESDADEQLILSFTFNQSVKIHSLKI--KAPKDKGPKTLKLFINQPKTLDFDAA 199
+ +T+ +SD + L F++ + I + I D+ P + A
Sbjct: 78 DNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADES--------YAPSLVKVYAG 129
Query: 200 TSNQSVQQIELTEKDLDGTPI---------NLRYVKFQNVQNLQIFVLDNQTEAETTVIT 250
S + ++ E N + Q +++ N + T +
Sbjct: 130 HSPSDARFYKMLEVR---NVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLR 186
Query: 251 HLALIG 256
+ L
Sbjct: 187 GIRLYV 192
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 28.1 bits (63), Expect = 2.4
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 60 VDQNQDLAAAQGVSAMPTFIFFRNKIP---DPNTLEAKIKQ 97
+ Q+ LA G + P+F+ +P + + L+ + +
Sbjct: 130 IAQSMALAQKLGFNGTPSFVVEDALVPGFVEQSQLQDAVDR 170
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 22 KLVVV---DFTASWCGPCQRIAPVFEQLSRKYPNAAF 55
+ VV D+ C C+R + L PN
Sbjct: 23 DVTVVEFFDYN---CPYCRRAMAEVQGLVDADPNVRL 56
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 27.2 bits (61), Expect = 2.5
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
VV+ F+ S+C R+ +F L +++DQ D A Q
Sbjct: 19 VVI-FSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQ 59
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 28.1 bits (62), Expect = 2.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 21 TKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFK 57
+ VV +F + +C C P+ QL ++ P A F+
Sbjct: 18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQ 54
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQN 63
VVV F C C++ + QL K F + +
Sbjct: 14 VVV-FIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSD 52
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 28.0 bits (62), Expect = 3.1
Identities = 27/184 (14%), Positives = 49/184 (26%), Gaps = 26/184 (14%)
Query: 83 NKIPDPNTLEAKIKQYYGVGEESGEESGVAGHMDLTSFIMKNQCEALNESDQHPFTNCLN 142
KI D I + ++ IM + L+
Sbjct: 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRY--------DGSQQALD 133
Query: 143 TAETYLESDADEQLILSFTFNQSVKIHSLKIKAPKDKGPKTLKLFINQPKTLDFDAATSN 202
+ D Q I +S +L+I +L L N+ LD
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD------- 186
Query: 203 QSVQQIELTEKDLDGTPINLRYVKFQNVQNLQIFVLDNQTEAETTVITHLALIGSPILTT 262
+ I +L +NL + ++ + L + + L L G+ + T
Sbjct: 187 -DMSSIVQKAPNL--KILNLSGNELKSERELDKI--------KGLKLEELWLDGNSLCDT 235
Query: 263 KMSD 266
Sbjct: 236 FRDQ 239
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
++ F+ S C + + + E + PN +++D++ Q
Sbjct: 16 IIIFSKSTCSYSKGMKELLENEYQFIPNYYI--IELDKHGHGEELQ 59
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
PDB: 2fls_A*
Length = 146
Score = 27.4 bits (61), Expect = 3.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
VV+ F+ + C C +F + N + V++D + Q
Sbjct: 51 VVI-FSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQ 91
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1;
paracaspase, lymphoma, NF-KB signalling, caspase fold,
immun fold, hydrolase-hydrolase inhibitor complex; 1.75A
{Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Length = 390
Score = 27.9 bits (61), Expect = 3.8
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 148 LESDADEQLILSFT--FNQSVKIHSLKIKAPKDKGPKTLKLFINQPKTLDFDAATSNQSV 205
L+ D Q+ L F F+ + I++ + P + + + P LD D +N+
Sbjct: 255 LKFDCGVQIQLGFAAEFSNVMIIYTSIVYKPPEIIMCDAYV-TDFPLDLDIDPKDANKGT 313
Query: 206 QQIELTEKDLDGTPINLRYVKFQNVQNLQ 234
+ + P + Y + ++Q L+
Sbjct: 314 PEETGSYLVSKDLPKHCLYTRLSSLQKLK 342
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 28.2 bits (62), Expect = 3.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 7 NSDAHFHTEMNNCGTKLVVVD--FTAS 31
S HF +E G ++VV+ F +
Sbjct: 262 PSSYHFLSEARYKGAEVVVIAPDFNPT 288
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 26.1 bits (58), Expect = 5.0
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 10 AHFHTEMNNCGTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDL 66
+H H + + + + +T S C C R + ++ F + +D + +
Sbjct: 4 SHHHHHHGSAVSAKIEI-YTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEA 54
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 26.0 bits (58), Expect = 5.4
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 25 VVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPTF--IFFR 82
++ +T C C+R + ++ + +D + Q + TF IF
Sbjct: 8 IILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQIFIG 62
Query: 83 NK 84
+
Sbjct: 63 DY 64
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQ 70
VV+ F+ + C C +F + N + V++D + Q
Sbjct: 29 VVI-FSKTSCSYCTMAKKLFHDM-----NVNYKVVELDLLEYGNQFQ 69
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 27.4 bits (60), Expect = 6.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 4 IVINSDAHFHTEMNNC 19
IN+DAH + +
Sbjct: 511 FAINTDAHVPGGLRDA 526
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 27.0 bits (60), Expect = 6.4
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 20 GTKLVVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVD---QNQDLAAAQGVSAMP 76
G + V+ F + G C F QL+ + N + D A+G+S +
Sbjct: 78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVI 137
Query: 77 TFIFFRNKIPDPNTLEAKIKQYYGVGEESGEESGVA 112
T R KQ YGV G +G+
Sbjct: 138 TLSTLRGA---------DFKQAYGVAITEGPLAGLT 164
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 26.1 bits (58), Expect = 6.5
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 24 VVVDFTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQ 62
VV+ ++ +WC C V R V++DQ
Sbjct: 21 VVI-YSKTWCSYCTE---VKTLFKRL--GVQPLVVELDQ 53
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta
sandwich, protein transport; HET: MLY; 1.73A
{Saccharomyces cerevisiae}
Length = 123
Score = 25.7 bits (56), Expect = 8.9
Identities = 4/45 (8%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 181 PKTLKLFINQPKTLDFDAATSNQSVQQIELTEKDLD-GTPINLRY 224
PK++ L + + + Q+ + + + +++
Sbjct: 57 PKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPSKALXVKW 101
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 26.9 bits (60), Expect = 9.8
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 28 FTASWCGPCQRIAPVFEQLSRKYPNAAFFKVDVDQNQDLAAAQGVSAMPT 77
+ + C C + ++ P +D Q+ + V +P
Sbjct: 124 YYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPA 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.378
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,967,330
Number of extensions: 223697
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 223
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)