Query psy5431
Match_columns 271
No_of_seqs 269 out of 1763
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:21:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1584|consensus 100.0 5.1E-67 1.1E-71 451.3 19.2 244 1-263 49-295 (297)
2 PLN02164 sulfotransferase 100.0 4.9E-61 1.1E-65 430.8 21.3 244 1-264 89-345 (346)
3 PF00685 Sulfotransfer_1: Sulf 100.0 2.9E-37 6.2E-42 268.3 14.0 247 1-259 11-267 (267)
4 KOG3704|consensus 98.7 1.8E-08 3.9E-13 86.1 4.0 106 66-178 171-288 (360)
5 KOG3703|consensus 98.4 4.1E-06 8.9E-11 78.1 11.2 92 86-178 686-790 (873)
6 PF13469 Sulfotransfer_3: Sulf 98.1 2E-06 4.4E-11 70.9 3.7 82 85-181 126-214 (215)
7 KOG3988|consensus 97.9 1.7E-05 3.8E-10 68.5 5.9 150 85-262 175-329 (378)
8 PF09037 Sulphotransf: Stf0 su 97.4 7.5E-05 1.6E-09 64.7 2.2 88 87-180 113-218 (245)
9 KOG3922|consensus 95.3 0.023 5.1E-07 49.9 4.2 46 63-109 137-182 (361)
10 PF06990 Gal-3-0_sulfotr: Gala 92.3 0.31 6.6E-06 45.4 5.8 45 65-110 125-171 (402)
11 PF03567 Sulfotransfer_2: Sulf 90.4 0.29 6.3E-06 41.4 3.5 28 233-260 225-252 (253)
12 COG4424 Uncharacterized protei 81.4 2.9 6.3E-05 35.1 4.6 106 87-198 117-238 (250)
13 PF13469 Sulfotransfer_3: Sulf 59.4 5.2 0.00011 32.1 1.4 11 1-11 10-21 (215)
14 cd00808 GluRS_core catalytic c 46.7 24 0.00051 30.5 3.4 53 128-181 12-69 (239)
15 KOG4157|consensus 40.8 10 0.00023 35.4 0.4 84 134-251 323-406 (418)
16 PF03484 B5: tRNA synthetase B 37.4 39 0.00085 22.9 2.8 28 168-195 8-35 (70)
17 PF14069 SpoVIF: Stage VI spor 34.9 72 0.0015 22.5 3.8 36 156-191 23-60 (79)
18 KOG4651|consensus 34.7 17 0.00036 32.9 0.7 22 87-108 146-167 (324)
19 PF02969 TAF: TATA box binding 34.3 42 0.00091 22.8 2.4 29 164-192 5-34 (66)
20 smart00874 B5 tRNA synthetase 34.3 56 0.0012 21.9 3.2 28 168-195 8-35 (71)
21 PF07582 AP_endonuc_2_N: AP en 33.0 1.3E+02 0.0028 19.6 4.5 30 148-177 13-42 (55)
22 PF03672 UPF0154: Uncharacteri 28.9 80 0.0017 21.3 3.1 31 159-189 25-58 (64)
23 cd01038 Endonuclease_DUF559 Do 27.3 61 0.0013 24.0 2.6 27 149-175 81-107 (108)
24 TIGR03715 KxYKxGKxW KxYKxGKxW 27.2 53 0.0011 18.2 1.7 13 1-13 8-20 (29)
25 PRK09767 hypothetical protein; 24.6 70 0.0015 24.3 2.5 31 148-178 83-113 (117)
26 PF11880 DUF3400: Domain of un 24.5 75 0.0016 19.8 2.1 16 3-18 24-39 (45)
27 cd00418 GlxRS_core catalytic c 24.3 1.2E+02 0.0025 26.1 4.1 53 128-181 12-69 (230)
28 PRK05710 glutamyl-Q tRNA(Asp) 24.3 1.1E+02 0.0023 27.5 3.9 53 128-181 16-73 (299)
29 PF13318 DUF4089: Protein of u 24.1 1.3E+02 0.0028 19.2 3.2 23 168-190 2-24 (50)
30 cd00807 GlnRS_core catalytic c 23.8 1.3E+02 0.0028 26.0 4.2 53 128-181 12-69 (238)
31 PF01498 HTH_Tnp_Tc3_2: Transp 23.0 1.1E+02 0.0023 20.5 3.0 62 159-255 7-71 (72)
32 PF13833 EF-hand_8: EF-hand do 22.4 1.8E+02 0.004 17.8 3.9 25 166-190 8-33 (54)
33 TIGR03838 queuosine_YadB gluta 21.4 1.4E+02 0.0031 26.2 4.1 53 128-181 11-68 (272)
34 PF13443 HTH_26: Cro/C1-type H 21.2 43 0.00093 21.7 0.6 15 165-179 40-54 (63)
35 smart00513 SAP Putative DNA-bi 20.8 1.8E+02 0.0039 16.6 3.8 25 165-189 6-33 (35)
36 PF13551 HTH_29: Winged helix- 20.2 2.4E+02 0.0052 20.1 4.7 26 231-256 50-75 (112)
No 1
>KOG1584|consensus
Probab=100.00 E-value=5.1e-67 Score=451.26 Aligned_cols=244 Identities=37% Similarity=0.554 Sum_probs=219.8
Q ss_pred CchhHHHHHHHHHHHcCCCCCccccccccccccceeeecccccchhhhhcCCCCCCcHHHHhhcCCCceEEEecCCCCCC
Q psy5431 1 MEGTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQEQQSPRFIKSHLPVQLLP 80 (271)
Q Consensus 1 KSGTTW~q~iv~~l~~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~ktH~~~~~lp 80 (271)
||||||||+|+++|+++++.+.+...|+..+.|++|...... ...+...+.++++||+++||+|+.+||
T Consensus 49 KsGTTWlkel~~~i~~~~d~~~~~~~pL~~~~P~~e~p~~e~-----------~~~~~~~~~~l~SPRl~kTHlP~~lLp 117 (297)
T KOG1584|consen 49 KSGTTWLQELTFLILNRGDFEKAKRHPLLERNPHLEVPFLEL-----------QLYGNDSAPDLPSPRLFKTHLPFQLLP 117 (297)
T ss_pred CCchHHHHHHHHHHHcCCCcccccCCchhhcCCceeeccccc-----------ccccccccccCCCCcceeccCChhhcc
Confidence 899999999999999999999887789999999999864321 122556777888999999999999999
Q ss_pred ccccCCCCeEEEEecCCcccchhhhHhhhhhcC--CCCCHHHHHHHHhccccccCChHHHHHHHHHHhcCCCCeeeeehh
Q psy5431 81 KDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNG--YEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYE 158 (271)
Q Consensus 81 ~~~~~~~~k~I~i~RdP~Dv~vS~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YE 158 (271)
+++++++|||||++|||+|++||+|||.+.... .+++|++|++.|+.|...+|+||+||++||.. +++.|||+++||
T Consensus 118 ~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~-~~~~~VLFl~YE 196 (297)
T KOG1584|consen 118 ESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDHVLGYWEL-EDPKNVLFLKYE 196 (297)
T ss_pred hhhhcCCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHHHHHHHHh-cCCCceEEEEHH
Confidence 999999999999999999999999999976644 45679999999999999999999999999998 899999999999
Q ss_pred hhccChHHHHHHHHHHcCCCCCHHHHHHHHHhCChhHhhcCCcccccccchhhhhccCCCCCCCCcceeecccCCCcccc
Q psy5431 159 DMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKE 238 (271)
Q Consensus 159 DL~~dp~~~~~~i~~FLg~~~~~~~l~~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~RkG~~G~Wk~~ 238 (271)
||++||..+|+|||+|||.+++++++++++.+.+|+.|+.|...|++...... + ..+.+.|||||.+||||||
T Consensus 197 dmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~~n~l~nle~n~~~~-----~--~~~~~~F~RKG~vGDWKn~ 269 (297)
T KOG1584|consen 197 DMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCSLNPLSNLEVNKTEK-----L--LHKISPFFRKGEVGDWKNY 269 (297)
T ss_pred HhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHhhccccCceeccccc-----c--cccchhhhcCCCccccccc
Confidence 99999999999999999999999999999999999999999988876654332 2 3344889999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC-CCcccc
Q psy5431 239 MSPELVKKFDEWTEMNGIE-DDDQEN 263 (271)
Q Consensus 239 fs~~~~~~~~~~~~e~l~~-~~~~~~ 263 (271)
||++|+++||.+++++|+| +||.|.
T Consensus 270 ~T~~~~ekfD~~~eekm~g~sgL~F~ 295 (297)
T KOG1584|consen 270 LTPEMNEKFDKIYEEKMEGCSGLKFR 295 (297)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 9999999999999999999 889885
No 2
>PLN02164 sulfotransferase
Probab=100.00 E-value=4.9e-61 Score=430.82 Aligned_cols=244 Identities=23% Similarity=0.396 Sum_probs=200.7
Q ss_pred CchhHHHHHHHHHHHcCCCCCccc----cccccccccceeeecccccchhhhhcCCCCCCcHHHHhhcCCCceEEEecCC
Q psy5431 1 MEGTTWTQELVWLLGNNFDYDTAK----QKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQEQQSPRFIKSHLPV 76 (271)
Q Consensus 1 KSGTTW~q~iv~~l~~~~~~~~~~----~~~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~ktH~~~ 76 (271)
||||||||+||++|+++++++... ....+.++||||...... ..++.++. ++||+||||+|+
T Consensus 89 KsGTTWlq~iv~~i~~~~~~~~~~~pl~~~~p~~~vP~lE~~~~~~-------------~~~~~l~~-~~PRlikTHlp~ 154 (346)
T PLN02164 89 KTGTTWLKALTFAIANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFF-------------PSVDVLKD-KGNTLFSTHIPY 154 (346)
T ss_pred CchhHHHHHHHHHHHcCCCcccccCcccccCccccCCceecccCCC-------------Cchhhhcc-CCCCeeEecCCh
Confidence 899999999999999987765431 122357789999764321 13445544 799999999999
Q ss_pred CCCCccccCCCCeEEEEecCCcccchhhhHhhhhhcC---CCCCHHHHHHHHhccccccCChHHHHHHHHHHhc-CCCCe
Q psy5431 77 QLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNG---YEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAK-HMPNV 152 (271)
Q Consensus 77 ~~lp~~~~~~~~k~I~i~RdP~Dv~vS~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~-~~~~v 152 (271)
+++|++++.+++|+|||+|||+|++||+|||...... ..++|+++++.|+.|...+|+|++|+.+||+..+ .++||
T Consensus 155 ~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~V 234 (346)
T PLN02164 155 GLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRI 234 (346)
T ss_pred hhCccccccCCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccE
Confidence 9999998889999999999999999999998765432 3468999999999999899999999999999821 45689
Q ss_pred eeeehhhhccChHHHHHHHHHHcCCCCCHH-----HHHHHHHhCChhHhhcCCcccccccchhhhhccCCCCCCCCccee
Q psy5431 153 LVNSYEDMQLNLPEVIKKTAKFLEKPISDK-----QLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFI 227 (271)
Q Consensus 153 l~v~YEDL~~dp~~~~~~i~~FLg~~~~~~-----~l~~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 227 (271)
|+|+||||++||.++|++||+|||++++++ .+++|+++|||++||+++ .|........ .+.......||
T Consensus 235 Lfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive~~SFe~Mk~~e-~n~~~~~~~~-----~~~~~~~~~Ff 308 (346)
T PLN02164 235 LFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLCSFETLKNLE-ANKGEKDRED-----RPAVYANSAYF 308 (346)
T ss_pred EEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHHHCCHHHHhhhH-hhcccccccc-----ccccccCccee
Confidence 999999999999999999999999999876 699999999999999875 3433211110 00012345799
Q ss_pred ecccCCCccccCCHHHHHHHHHHHHhhcCCCCccccc
Q psy5431 228 RKGIMGSWKKEMSPELVKKFDEWTEMNGIEDDDQENK 264 (271)
Q Consensus 228 RkG~~G~Wk~~fs~~~~~~~~~~~~e~l~~~~~~~~~ 264 (271)
|||++|||||+||++|+++|+++++++|+|+|+.|-+
T Consensus 309 RKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~~~ 345 (346)
T PLN02164 309 RKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLEHD 345 (346)
T ss_pred eccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCcccC
Confidence 9999999999999999999999999999999999864
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=2.9e-37 Score=268.34 Aligned_cols=247 Identities=32% Similarity=0.518 Sum_probs=178.0
Q ss_pred CchhHHHHHHHHHHHcCCCCCccccccc---cccccceeeecccccchhhhh--cC--CCCCCcHHHHhhcCCCceEEEe
Q psy5431 1 MEGTTWTQELVWLLGNNFDYDTAKQKLL---LQRFPFLEAVSIINQNDLIQE--NG--TLFGDTISFVQEQQSPRFIKSH 73 (271)
Q Consensus 1 KSGTTW~q~iv~~l~~~~~~~~~~~~~~---~~~~p~le~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~pr~~ktH 73 (271)
|||||||++|+.....-..........+ ....|+++...........+. +. .........+...+.+++++||
T Consensus 11 rSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 90 (267)
T PF00685_consen 11 RSGTTWLRELLNSHPDIFSFSPFKEPHFFNNRDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLRDLPSPRFIKTH 90 (267)
T ss_dssp TSSHHHHHHHHHHHHTTTETHHHTSSHHTTTHHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHHCSCSSEEEEE-
T ss_pred CCcHHHHHHHHHhCcccccccccccccccchhhhhhhhhhhhcccccccccccccccccccchhHHHHhhccCchhhhhc
Confidence 8999999999998765443311111111 345566664210000000000 00 0011234467788899999999
Q ss_pred cCCCCCCccccCCCCeEEEEecCCcccchhhhHhhhhhcC--CCC-CHHHHHHHHhccccccCChHHHHHHHHHHhcCCC
Q psy5431 74 LPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNG--YEG-SFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMP 150 (271)
Q Consensus 74 ~~~~~lp~~~~~~~~k~I~i~RdP~Dv~vS~~~~~~~~~~--~~~-~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~~~ 150 (271)
+++..++..+..+++|+|+|+|||+|+++|.+++...... ..+ .++++++.++.....++.|++++..|+.. ...+
T Consensus 91 ~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (267)
T PF00685_consen 91 LPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHLKSWLSS-FDRD 169 (267)
T ss_dssp S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHHHHHHHH-TTTS
T ss_pred cccccccccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccccccchhhh-hccc
Confidence 9988776544467899999999999999999999865432 122 37788887877777889999999999997 8899
Q ss_pred CeeeeehhhhccChHHHHHHHHHHcCCCCCHHHHHHHHHhCChhHhhcCCcccccccchhhhhccCCCCCCCCcceeecc
Q psy5431 151 NVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKG 230 (271)
Q Consensus 151 ~vl~v~YEDL~~dp~~~~~~i~~FLg~~~~~~~l~~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~RkG 230 (271)
++++|+||||+.||.+++++|++|||++++++.++.+++.++|+.|+.....+..... ......++|+|
T Consensus 170 ~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 238 (267)
T PF00685_consen 170 NVLIIRYEDLVADPEKELKRICDFLGLPFSDEPLDKIVEKSSFDNMRSKEARNKSKLS-----------DGSSSRFFRKG 238 (267)
T ss_dssp TEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHHHHHHHHHTSHHHHHHETTTSSTTSC-----------TTTTSTSSEET
T ss_pred hhhhhcchhhhhhhhHHHHHHHHHHhhccchhhhHHHHHhhhhhhhcccccccccccc-----------cCCcceeeeec
Confidence 9999999999999999999999999999999999999999999999986543321110 11346789999
Q ss_pred cCCCccccCCHHHHHHHHHHHHhhcCCCC
Q psy5431 231 IMGSWKKEMSPELVKKFDEWTEMNGIEDD 259 (271)
Q Consensus 231 ~~G~Wk~~fs~~~~~~~~~~~~e~l~~~~ 259 (271)
.+|+|+++||+++++.|+++|++.|+.+|
T Consensus 239 ~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 239 KSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp -STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred ccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999887
No 4
>KOG3704|consensus
Probab=98.67 E-value=1.8e-08 Score=86.06 Aligned_cols=106 Identities=17% Similarity=0.289 Sum_probs=77.5
Q ss_pred CCceEEEecCCCCCCcccc--CCCCeEEEEecCCcccchhhhHhhhhhcCCCCCHHHHHHHHhc---c-------ccccC
Q psy5431 66 SPRFIKSHLPVQLLPKDIW--VKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLE---D-------KVVYS 133 (271)
Q Consensus 66 ~pr~~ktH~~~~~lp~~~~--~~~~k~I~i~RdP~Dv~vS~~~~~~~~~~~~~~~~~~~~~~~~---g-------~~~~g 133 (271)
.|.++.|- ..|+.+. +++.|.|+|+|||...++|-|-..-.......+|+.+. |.. | .+..|
T Consensus 171 TPsYFvt~----e~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~la--fkn~~~g~id~~w~ai~ig 244 (360)
T KOG3704|consen 171 TPSYFVTR----EVPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVLA--FKNRTAGLIDTSWKAIRIG 244 (360)
T ss_pred Cchhhccc----ccchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeeee--eecCccceeecchhhhhhh
Confidence 45555443 2344433 57899999999999999999977533222222333211 111 1 23457
Q ss_pred ChHHHHHHHHHHhcCCCCeeeeehhhhccChHHHHHHHHHHcCCC
Q psy5431 134 PFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKP 178 (271)
Q Consensus 134 ~~~~h~~~w~~~~~~~~~vl~v~YEDL~~dp~~~~~~i~~FLg~~ 178 (271)
-|..|+..|+.+ ++-.++|+|.-|-|+.||.+++.|+-+|||+.
T Consensus 245 lY~~Hle~WL~y-FpL~q~lfVsGerli~dPa~E~~rVqdFLgLk 288 (360)
T KOG3704|consen 245 LYAVHLENWLRY-FPLRQILFVSGERLISDPAGELGRVQDFLGLK 288 (360)
T ss_pred HHHHHHHHHHHh-CchhheEEecCceeecCcHHHHHHHHHHhccc
Confidence 789999999999 88899999999999999999999999999986
No 5
>KOG3703|consensus
Probab=98.36 E-value=4.1e-06 Score=78.15 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCeEEEEecCCcccchhhhHhhhhhcC------------CCCCH-HHHHHHHhccccccCChHHHHHHHHHHhcCCCCe
Q psy5431 86 KKPKIIYVTREPKDAAVSYFHHHRLWNG------------YEGSF-DDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNV 152 (271)
Q Consensus 86 ~~~k~I~i~RdP~Dv~vS~~~~~~~~~~------------~~~~~-~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~~~~v 152 (271)
|.+|||-|+-||.|++.|+|.|.+.... ..++. ...+.......+..|-|..|+..|..+ ....++
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y-~~~~Ql 764 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTY-FPAQQL 764 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHh-CCcccE
Confidence 6799999999999999999999876532 01111 111111111223457788999999999 889999
Q ss_pred eeeehhhhccChHHHHHHHHHHcCCC
Q psy5431 153 LVNSYEDMQLNLPEVIKKTAKFLEKP 178 (271)
Q Consensus 153 l~v~YEDL~~dp~~~~~~i~~FLg~~ 178 (271)
++|.-+.|..||..++..+-.|||+.
T Consensus 765 liiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 765 LIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred EEEccHHhccCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999994
No 6
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.13 E-value=2e-06 Score=70.90 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCCCeEEEEecCCcccchhhhHhhhhh--cC-CCCCHHHHHHHHhccccccCChHHHHHHHHHHhcCCCCeeee----eh
Q psy5431 85 VKKPKIIYVTREPKDAAVSYFHHHRLW--NG-YEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVN----SY 157 (271)
Q Consensus 85 ~~~~k~I~i~RdP~Dv~vS~~~~~~~~--~~-~~~~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~~~~vl~v----~Y 157 (271)
-++ |+|+++|||+|++.|+....... .. .......... +. +......+... ....+.+ +|
T Consensus 126 ~p~-~~V~i~RdP~~~~~S~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~---~~~~~~~~~~~~y 192 (215)
T PF13469_consen 126 FPD-RFVHIVRDPRDVAASWLRMFLRHLLRRSFYEDQWARWY-WE--------WRRALRRWRDY---PHRWLRVRYEWRY 192 (215)
T ss_dssp STT-EEEEEE--HHHHHHHHHHHCHHHHHCTCCCCCHHHHHH-HH--------HHHHHHHHHHH---HHHHHHHHHHHEH
T ss_pred CCC-eEEEEEeChHHHHhhHHHHhhhhhhhcccchhhhHHhH-HH--------HHHHHHhhccc---HHHHHHHHhhcCH
Confidence 368 99999999999999987665211 11 1111110000 00 00000000000 0112223 56
Q ss_pred hhhccChHHHHHHHHHHcCCCCCH
Q psy5431 158 EDMQLNLPEVIKKTAKFLEKPISD 181 (271)
Q Consensus 158 EDL~~dp~~~~~~i~~FLg~~~~~ 181 (271)
|||.+||.+++++||+ + +++++
T Consensus 193 edl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 193 EDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp HHHHHSHHHHHHHHHH-C-----H
T ss_pred HHHHHCHHHHHHHHHH-h-hCCcC
Confidence 9999999999999999 7 87653
No 7
>KOG3988|consensus
Probab=97.94 E-value=1.7e-05 Score=68.46 Aligned_cols=150 Identities=15% Similarity=0.209 Sum_probs=88.5
Q ss_pred CCCCeEEEEecCCcccchhhhHhhhhhcCC-CCCHHHHHHHHhccccccCChHHHHHHHHHH--hcCCCCeeeeehhhhc
Q psy5431 85 VKKPKIIYVTREPKDAAVSYFHHHRLWNGY-EGSFDDFMKAFLEDKVVYSPFWSHVNSYKKL--AKHMPNVLVNSYEDMQ 161 (271)
Q Consensus 85 ~~~~k~I~i~RdP~Dv~vS~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~g~~~~h~~~w~~~--~~~~~~vl~v~YEDL~ 161 (271)
-|++|+++++||.|.++-|..-.--...++ ..++.+.+.. |...+..-+.. ..+..+.+.|.||.|+
T Consensus 175 fPNAKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~tk----------WN~aie~M~~QC~~vg~~~Cl~VyYEqLV 244 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMTK----------WNQAIEVMYFQCMEVGKKKCLKVYYEQLV 244 (378)
T ss_pred CCCceEEEEEecchHHHHHHHhccceeccccchHHHHHHHH----------HHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 378999999999999998886443222222 2223332222 22222221111 0346689999999999
Q ss_pred cChHHHHHHHHHHcCCCCCHHHHH--HHHHhCChhHhhcCCcccccccchhhhhccCCCCCCCCcceeecccCCCccccC
Q psy5431 162 LNLPEVIKKTAKFLEKPISDKQLK--KLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEM 239 (271)
Q Consensus 162 ~dp~~~~~~i~~FLg~~~~~~~l~--~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~RkG~~G~Wk~~f 239 (271)
..|++.+++|.+||+++++++.+. ..+-.. + ....+..... ...-.+-+.-+.--.|-..+
T Consensus 245 lhPe~~mr~Il~FLdipw~d~vLhHedlIgk~-------~-gVsLskvErS---------sdQVikpVNl~AlskWvg~i 307 (378)
T KOG3988|consen 245 LHPEEWMRRILKFLDIPWSDAVLHHEDLIGKP-------G-GVSLSKVERS---------SDQVIKPVNLEALSKWVGCI 307 (378)
T ss_pred hCHHHHHHHHHHHhCCCcHHHHHhHHHhcCCC-------C-CCChhhhhcc---------HhhhhccccHHHHHHHhccC
Confidence 999999999999999999987652 111100 0 0000000000 00001112334456899999
Q ss_pred CHHHHHHHHHHHHhhcCCCCccc
Q psy5431 240 SPELVKKFDEWTEMNGIEDDDQE 262 (271)
Q Consensus 240 s~~~~~~~~~~~~e~l~~~~~~~ 262 (271)
+++.++.++.+ +.-|+-.||+.
T Consensus 308 p~dvvrdma~i-APmL~~LGYDp 329 (378)
T KOG3988|consen 308 PEDVVRDMADI-APMLAILGYDP 329 (378)
T ss_pred CHHHHHHHHHH-HHHHHHhCCCC
Confidence 99999998765 45666666653
No 8
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.42 E-value=7.5e-05 Score=64.70 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCeEEEEec-CCcccchhhhHhhhhh--cC-----CCC----------CHHHHHHHHhccccccCChHHHHHHHHHHhcC
Q psy5431 87 KPKIIYVTR-EPKDAAVSYFHHHRLW--NG-----YEG----------SFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKH 148 (271)
Q Consensus 87 ~~k~I~i~R-dP~Dv~vS~~~~~~~~--~~-----~~~----------~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~ 148 (271)
+.++||+.| |...-+||+..-.... .. ... ++++... .+.- ....-.....|... .
T Consensus 113 ~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~~---i~~~~~~w~~~f~~--~ 186 (245)
T PF09037_consen 113 DVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LIDR---IEDQEAFWRNWFAR--H 186 (245)
T ss_dssp S-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHHH---HHHHHHHHHHHHHH--T
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHHH---HHHHHHHHHHHHHH--c
Confidence 489999997 9999999999765321 11 000 1111111 1100 00011112233332 3
Q ss_pred CCCeeeeehhhhccChHHHHHHHHHHcCCCCC
Q psy5431 149 MPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180 (271)
Q Consensus 149 ~~~vl~v~YEDL~~dp~~~~~~i~~FLg~~~~ 180 (271)
.-+.+.|.||||.+||.+++.+|++|||++..
T Consensus 187 ~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~ 218 (245)
T PF09037_consen 187 GIEPLEITYEDLLADPQKTVARVLDFLGVDPP 218 (245)
T ss_dssp T---EEEEHHHHHHHHHHHHHHHHHHTTS-GG
T ss_pred CCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 44568899999999999999999999999754
No 9
>KOG3922|consensus
Probab=95.29 E-value=0.023 Score=49.90 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=34.1
Q ss_pred hcCCCceEEEecCCCCCCccccCCCCeEEEEecCCcccchhhhHhhh
Q psy5431 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHR 109 (271)
Q Consensus 63 ~~~~pr~~ktH~~~~~lp~~~~~~~~k~I~i~RdP~Dv~vS~~~~~~ 109 (271)
..+.|.++.-|..|--+.+ +--+++-+|-|+|||.++++|+|.|.+
T Consensus 137 ~e~~P~~yhgHV~FldFsk-Fgi~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 137 TEMKPALYHGHVAFLDFSK-FGIARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred cccCcceeeeeeeeeehhh-hCCCCceEEeeeccHHHHHHhHhhhhc
Confidence 3457999999987632222 222446788899999999999999975
No 10
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=92.27 E-value=0.31 Score=45.41 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCCceEEEecCCCC--CCccccCCCCeEEEEecCCcccchhhhHhhhh
Q psy5431 65 QSPRFIKSHLPVQL--LPKDIWVKKPKIIYVTREPKDAAVSYFHHHRL 110 (271)
Q Consensus 65 ~~pr~~ktH~~~~~--lp~~~~~~~~k~I~i~RdP~Dv~vS~~~~~~~ 110 (271)
...-++..|+.|+. +. .+..+++++|-|+|||...+.|.|++++.
T Consensus 125 ~~~nIl~~H~rfn~~~~~-~lmP~dt~yiTILRdP~~~feS~f~Yy~~ 171 (402)
T PF06990_consen 125 GRFNILCHHMRFNRPEVR-KLMPPDTKYITILRDPVSHFESSFNYYKR 171 (402)
T ss_pred CCceEEeehhccCHHHHH-HhCCCCCeEEEEEcCHHHHHHhHHHHhhc
Confidence 45678888988752 11 22235789999999999999999999864
No 11
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=90.42 E-value=0.29 Score=41.43 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=22.3
Q ss_pred CCccccCCHHHHHHHHHHHHhhcCCCCc
Q psy5431 233 GSWKKEMSPELVKKFDEWTEMNGIEDDD 260 (271)
Q Consensus 233 G~Wk~~fs~~~~~~~~~~~~e~l~~~~~ 260 (271)
..+...+++++.+.+.+.+...+.-+||
T Consensus 225 ~~~~~~~~~~~~~~i~~~y~~D~~lf~Y 252 (253)
T PF03567_consen 225 SNYEDYLSEETREKIKELYKLDFELFGY 252 (253)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 3455788999999999999988765554
No 12
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.44 E-value=2.9 Score=35.06 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCeEEEEec-CCcccchhhhHhhhh--hcC-CC---------CCHHHHHHHHhccccccCChHHHHHHHHHHhcCCCCee
Q psy5431 87 KPKIIYVTR-EPKDAAVSYFHHHRL--WNG-YE---------GSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVL 153 (271)
Q Consensus 87 ~~k~I~i~R-dP~Dv~vS~~~~~~~--~~~-~~---------~~~~~~~~~~~~g~~~~g~~~~h~~~w~~~~~~~~~vl 153 (271)
..-+|++.| |-..-+||+.+-... +.. .. -+|++....+ .. +-.|-.--+.|++. ..-.-+
T Consensus 117 ~~lfvhl~R~dkv~QAvSl~rA~QTglwhahpdG~ap~s~p~Ydfe~Ia~~~-~~---lrdydaaWn~wfa~--qGiep~ 190 (250)
T COG4424 117 EPLFVHLHRPDKVSQAVSLWRAVQTGLWHAHPDGPAPDSQPVYDFEAIAHII-RN---LRDYDAAWNAWFAE--QGIEPI 190 (250)
T ss_pred CeeEEEeecchHHHHHHHHHHHHHhcceeccCCCCCCccccccCHHHHHHHH-HH---HHHHHHHHHHHHHH--cCCcHH
Confidence 345666654 566678888876532 111 11 1344322111 10 11122233455554 344566
Q ss_pred eeehhhhccChHHHHHHHHHHcCCCCCH---HHHHHHHHhCChhHhhc
Q psy5431 154 VNSYEDMQLNLPEVIKKTAKFLEKPISD---KQLKKLTNHLSFDSMKN 198 (271)
Q Consensus 154 ~v~YEDL~~dp~~~~~~i~~FLg~~~~~---~~l~~i~~~~sf~~mk~ 198 (271)
-|-||.|.+||.+.+..+|+.||++... ..+++-.+..|-+.|..
T Consensus 191 riaYe~Lsadp~aava~~~ealgv~~p~a~~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 191 RIAYEVLSADPTAAVASVLEALGVDPPLAPAPMLARQADQRSDEWVDR 238 (250)
T ss_pred HHhHHHHccCcHHHHHHHHHHhCCCCCCCcCchHHHhhhhhhHHHHHH
Confidence 7889999999999999999999998653 34666666667676664
No 13
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=59.39 E-value=5.2 Score=32.11 Aligned_cols=11 Identities=36% Similarity=0.441 Sum_probs=9.0
Q ss_pred CchhHHHH-HHH
Q psy5431 1 MEGTTWTQ-ELV 11 (271)
Q Consensus 1 KSGTTW~q-~iv 11 (271)
||||||+. .|+
T Consensus 10 RSGTTlL~~~Ll 21 (215)
T PF13469_consen 10 RSGTTLLSRRLL 21 (215)
T ss_dssp TSSHHHHH-HHH
T ss_pred CCcHHHHHHHHH
Confidence 79999998 554
No 14
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=46.71 E-value=24 Score=30.50 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=39.2
Q ss_pred cccccCChHHHHHHHHHHhcCCCCeeeeehhhhcc--Ch---HHHHHHHHHHcCCCCCH
Q psy5431 128 DKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQL--NL---PEVIKKTAKFLEKPISD 181 (271)
Q Consensus 128 g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YEDL~~--dp---~~~~~~i~~FLg~~~~~ 181 (271)
|....|.+..-+.+|... +.....+++|.||.-. .. ...+.+.+++||+.+++
T Consensus 12 G~LHlG~~~~al~n~l~a-r~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFA-RKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHH-HHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 455567777888888877 7667799999999622 22 35666777899999875
No 15
>KOG4157|consensus
Probab=40.81 E-value=10 Score=35.36 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHhcCCCCeeeeehhhhccChHHHHHHHHHHcCCCCCHHHHHHHHHhCChhHhhcCCcccccccchhhhh
Q psy5431 134 PFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIV 213 (271)
Q Consensus 134 ~~~~h~~~w~~~~~~~~~vl~v~YEDL~~dp~~~~~~i~~FLg~~~~~~~l~~i~~~~sf~~mk~~~~~~~~~~~~~~~~ 213 (271)
.|..|-.+|.. ...++++++||+|..++...+..+..|+|++..+...- . .
T Consensus 323 ~~ss~~~~w~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~----~-------- 373 (418)
T KOG4157|consen 323 GWSSHTLSWAR---KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESLML--------------C----D-------- 373 (418)
T ss_pred Cccccchhhhc---ccccceeEEeecccccccccccccccccCccccccccC--------------C----c--------
Confidence 45556666653 34556999999999999999999999999776543210 0 0
Q ss_pred ccCCCCCCCCcceeecccCCCccccCCHHHHHHHHHHH
Q psy5431 214 KYDMPRDDPELTFIRKGIMGSWKKEMSPELVKKFDEWT 251 (271)
Q Consensus 214 ~~~~~~~~~~~~f~RkG~~G~Wk~~fs~~~~~~~~~~~ 251 (271)
. ..+...+.|.|....=.+-+++.+.+.++...
T Consensus 374 ---~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
T KOG4157|consen 374 ---I--MQKEGIFGRRGKRLLSPDPLTDSMLDEVKGLR 406 (418)
T ss_pred ---c--ccccCcccccCCccCCCCcchhhhhhhhhccc
Confidence 0 22344566667777777788888877766543
No 16
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=37.36 E-value=39 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhCChhH
Q psy5431 168 IKKTAKFLEKPISDKQLKKLTNHLSFDS 195 (271)
Q Consensus 168 ~~~i~~FLg~~~~~~~l~~i~~~~sf~~ 195 (271)
+.+|...||++++.+++..++++..|+.
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKV 35 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEE
Confidence 4578889999999999999998877654
No 17
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=34.91 E-value=72 Score=22.54 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=27.7
Q ss_pred ehhhhcc--ChHHHHHHHHHHcCCCCCHHHHHHHHHhC
Q psy5431 156 SYEDMQL--NLPEVIKKTAKFLEKPISDKQLKKLTNHL 191 (271)
Q Consensus 156 ~YEDL~~--dp~~~~~~i~~FLg~~~~~~~l~~i~~~~ 191 (271)
...||.. ..+..|++++.-+|.+++++..+.|++.-
T Consensus 23 ~~adlqdE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I 60 (79)
T PF14069_consen 23 QKADLQDEKKVRQLIKQVSQIANKPVSKEQEDQIVQAI 60 (79)
T ss_pred chhhcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3345554 34688899999999999999988888753
No 18
>KOG4651|consensus
Probab=34.70 E-value=17 Score=32.95 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.1
Q ss_pred CCeEEEEecCCcccchhhhHhh
Q psy5431 87 KPKIIYVTREPKDAAVSYFHHH 108 (271)
Q Consensus 87 ~~k~I~i~RdP~Dv~vS~~~~~ 108 (271)
+.--+.++|||.+++||+|.--
T Consensus 146 ~~~kfaFIRDP~eRFVS~y~dK 167 (324)
T KOG4651|consen 146 DTVKFAFIRDPFERFVSAYLDK 167 (324)
T ss_pred CeEEEEEecCcHHHHHHHHHHH
Confidence 3444557899999999999763
No 19
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=34.29 E-value=42 Score=22.80 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCC-CCCHHHHHHHHHhCC
Q psy5431 164 LPEVIKKTAKFLEK-PISDKQLKKLTNHLS 192 (271)
Q Consensus 164 p~~~~~~i~~FLg~-~~~~~~l~~i~~~~s 192 (271)
|...++.+++=+|+ +++++....+++..+
T Consensus 5 ~~esvk~iAes~Gi~~l~de~a~~La~dve 34 (66)
T PF02969_consen 5 SQESVKDIAESLGISNLSDEAAKALAEDVE 34 (66)
T ss_dssp -HHHHHHHHHHTT---B-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 57789999999999 688877666665544
No 20
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=34.29 E-value=56 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhCChhH
Q psy5431 168 IKKTAKFLEKPISDKQLKKLTNHLSFDS 195 (271)
Q Consensus 168 ~~~i~~FLg~~~~~~~l~~i~~~~sf~~ 195 (271)
..+|...||.+++++++..++....|+.
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeE
Confidence 4578889999999999999988776653
No 21
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=32.97 E-value=1.3e+02 Score=19.62 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCCeeeeehhhhccChHHHHHHHHHHcCC
Q psy5431 148 HMPNVLVNSYEDMQLNLPEVIKKTAKFLEK 177 (271)
Q Consensus 148 ~~~~vl~v~YEDL~~dp~~~~~~i~~FLg~ 177 (271)
+-.-++.|-+||..-++..-+++-++||.-
T Consensus 13 GYdG~~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 13 GYDGWLSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp T--SEEEE---STTTSHHHHHHHHHHHHHT
T ss_pred CCCceEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 445689999999999999999999999853
No 22
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.94 E-value=80 Score=21.33 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.0
Q ss_pred hhccChH---HHHHHHHHHcCCCCCHHHHHHHHH
Q psy5431 159 DMQLNLP---EVIKKTAKFLEKPISDKQLKKLTN 189 (271)
Q Consensus 159 DL~~dp~---~~~~~i~~FLg~~~~~~~l~~i~~ 189 (271)
.|.+||. ..++.++.=+|..+++..+.++..
T Consensus 25 ~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~ 58 (64)
T PF03672_consen 25 QLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMR 58 (64)
T ss_pred HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3556765 889999999999999999998864
No 23
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=27.27 E-value=61 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.7
Q ss_pred CCCeeeeehhhhccChHHHHHHHHHHc
Q psy5431 149 MPNVLVNSYEDMQLNLPEVIKKTAKFL 175 (271)
Q Consensus 149 ~~~vl~v~YEDL~~dp~~~~~~i~~FL 175 (271)
.-.|+-+.++|+..+|..++.+|.+.|
T Consensus 81 Gw~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 81 GFRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CCEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 456888999999999999999998765
No 24
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=27.19 E-value=53 Score=18.21 Aligned_cols=13 Identities=15% Similarity=0.366 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHH
Q psy5431 1 MEGTTWTQELVWL 13 (271)
Q Consensus 1 KSGTTW~q~iv~~ 13 (271)
|||..|+-.-+..
T Consensus 8 KsGK~Wv~a~~~~ 20 (29)
T TIGR03715 8 KSGKQWVFAAITT 20 (29)
T ss_pred ecccHHHHHHHHH
Confidence 8999999766543
No 25
>PRK09767 hypothetical protein; Provisional
Probab=24.55 E-value=70 Score=24.34 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=26.4
Q ss_pred CCCCeeeeehhhhccChHHHHHHHHHHcCCC
Q psy5431 148 HMPNVLVNSYEDMQLNLPEVIKKTAKFLEKP 178 (271)
Q Consensus 148 ~~~~vl~v~YEDL~~dp~~~~~~i~~FLg~~ 178 (271)
..-.|+-+..+|+..|+.+++..|...|+..
T Consensus 83 ~G~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~ 113 (117)
T PRK09767 83 QGWTVLRFWNNEIDCNEEAVLEIILQELNRR 113 (117)
T ss_pred CCCEEEEEEHHHHHhCHHHHHHHHHHHHhcc
Confidence 3456888888999999999999999998764
No 26
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=24.49 E-value=75 Score=19.77 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHcCC
Q psy5431 3 GTTWTQELVWLLGNNF 18 (271)
Q Consensus 3 GTTW~q~iv~~l~~~~ 18 (271)
|-+|+++.|....++|
T Consensus 24 Ge~W~~~~v~~a~~GG 39 (45)
T PF11880_consen 24 GENWQQDYVERANNGG 39 (45)
T ss_pred hhhHHHHHHHHHHcCC
Confidence 7899999999887665
No 27
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=24.34 E-value=1.2e+02 Score=26.07 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=37.8
Q ss_pred cccccCChHHHHHHHHHHhcCCCCeeeeehhhhccC--h---HHHHHHHHHHcCCCCCH
Q psy5431 128 DKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLN--L---PEVIKKTAKFLEKPISD 181 (271)
Q Consensus 128 g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YEDL~~d--p---~~~~~~i~~FLg~~~~~ 181 (271)
|....|.-..-+.+|.-. +...--+++|.||.=.. . ...+.+-+++||+.+++
T Consensus 12 G~lHlG~~r~al~n~l~A-r~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~ 69 (230)
T cd00418 12 GYLHIGHARTALFNFAFA-RKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE 69 (230)
T ss_pred CcccHHHHHHHHHHHHHH-HHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 444456666667788777 77777889999998432 2 45666667799999875
No 28
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=24.28 E-value=1.1e+02 Score=27.47 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=37.5
Q ss_pred cccccCChHHHHHHHHHHhcCCCCeeeeehhhhcc--Ch---HHHHHHHHHHcCCCCCH
Q psy5431 128 DKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQL--NL---PEVIKKTAKFLEKPISD 181 (271)
Q Consensus 128 g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YEDL~~--dp---~~~~~~i~~FLg~~~~~ 181 (271)
|....|....-+.+|.-. +...--+++|.||.-. .. ...|.+-+++||+.+++
T Consensus 16 G~LHlG~~rtAL~n~l~A-r~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe 73 (299)
T PRK05710 16 GPLHFGSLVAALGSWLDA-RAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDG 73 (299)
T ss_pred CcccHHHHHHHHHHHHHH-HHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 444566666777888777 6667788999999732 12 24566677799999874
No 29
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=24.13 E-value=1.3e+02 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh
Q psy5431 168 IKKTAKFLEKPISDKQLKKLTNH 190 (271)
Q Consensus 168 ~~~i~~FLg~~~~~~~l~~i~~~ 190 (271)
++.++.-||++++++....++.+
T Consensus 2 v~~~a~llgL~l~~~~r~~V~~n 24 (50)
T PF13318_consen 2 VDQMAALLGLPLDEEWRPGVVAN 24 (50)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Confidence 56788899999999988777654
No 30
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=23.78 E-value=1.3e+02 Score=26.01 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=37.7
Q ss_pred cccccCChHHHHHHHHHHhcCCCCeeeeehhhhccC-----hHHHHHHHHHHcCCCCCH
Q psy5431 128 DKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLN-----LPEVIKKTAKFLEKPISD 181 (271)
Q Consensus 128 g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YEDL~~d-----p~~~~~~i~~FLg~~~~~ 181 (271)
|....|.-..-+.+|... +...--+++|+||.=.. -...+.+-+++||+.+++
T Consensus 12 G~lHlG~~~~al~~~l~A-r~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~ 69 (238)
T cd00807 12 GYLHIGHAKAILLNFGYA-KKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK 69 (238)
T ss_pred CcccHHHHHHHHHHHHHH-HHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 344456556667778777 66677888999997542 245577778899999873
No 31
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=22.96 E-value=1.1e+02 Score=20.52 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=31.2
Q ss_pred hhccChHHHHHHHHHHc---CCCCCHHHHHHHHHhCChhHhhcCCcccccccchhhhhccCCCCCCCCcceeecccCCCc
Q psy5431 159 DMQLNLPEVIKKTAKFL---EKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSW 235 (271)
Q Consensus 159 DL~~dp~~~~~~i~~FL---g~~~~~~~l~~i~~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~RkG~~G~W 235 (271)
...+||......|..-| |..++...|.+++....+ ++..-.|
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g~-----------------------------------~~~~~~~ 51 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKSTIRRRLREAGL-----------------------------------KKRKARK 51 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHHHHHHHHHT-E-----------------------------------EEETTEE
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcCc-----------------------------------ccccccc
Confidence 45678999999999999 999999998887643211 1345566
Q ss_pred cccCCHHHHHHHHHHHHhhc
Q psy5431 236 KKEMSPELVKKFDEWTEMNG 255 (271)
Q Consensus 236 k~~fs~~~~~~~~~~~~e~l 255 (271)
+..||+.+...=-+++.+.+
T Consensus 52 kP~Ls~~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 52 KPFLSPKHKKKRLEFAKEHL 71 (72)
T ss_dssp EES--HHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHhhhcc
Confidence 78889888776666665543
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=22.39 E-value=1.8e+02 Score=17.85 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHh
Q psy5431 166 EVIKKTAKFLEKP-ISDKQLKKLTNH 190 (271)
Q Consensus 166 ~~~~~i~~FLg~~-~~~~~l~~i~~~ 190 (271)
..+++++.-+|+. +++++++.+...
T Consensus 8 ~~~~~~l~~~g~~~~s~~e~~~l~~~ 33 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEEVDRLFRE 33 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 4566777888999 999999888754
No 33
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=21.36 E-value=1.4e+02 Score=26.24 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=37.9
Q ss_pred cccccCChHHHHHHHHHHhcCCCCeeeeehhhhccC-----hHHHHHHHHHHcCCCCCH
Q psy5431 128 DKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLN-----LPEVIKKTAKFLEKPISD 181 (271)
Q Consensus 128 g~~~~g~~~~h~~~w~~~~~~~~~vl~v~YEDL~~d-----p~~~~~~i~~FLg~~~~~ 181 (271)
|....|.-..-+.+|.-. +...--+++|.||.-.. -...|.+-+++||+.+++
T Consensus 11 G~lHiG~~rtAL~n~l~A-r~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe 68 (272)
T TIGR03838 11 GPLHFGSLVAALGSYLDA-RAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDG 68 (272)
T ss_pred CcccHHHHHHHHHHHHHH-HHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 334455556667778776 77788999999998632 235666777899999884
No 34
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=21.15 E-value=43 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCCC
Q psy5431 165 PEVIKKTAKFLEKPI 179 (271)
Q Consensus 165 ~~~~~~i~~FLg~~~ 179 (271)
...+.+||.+||+++
T Consensus 40 ~~~l~~ia~~l~~~~ 54 (63)
T PF13443_consen 40 LDTLEKIAKALNCSP 54 (63)
T ss_dssp HHHHHHHHHHHT--H
T ss_pred HHHHHHHHHHcCCCH
Confidence 467889999999874
No 35
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.78 E-value=1.8e+02 Score=16.56 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHH
Q psy5431 165 PEVIKKTAKFLEKPIS---DKQLKKLTN 189 (271)
Q Consensus 165 ~~~~~~i~~FLg~~~~---~~~l~~i~~ 189 (271)
..+++++|..+|++.+ .+.++++.+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLE 33 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 5678999999999875 344555543
No 36
>PF13551 HTH_29: Winged helix-turn helix
Probab=20.18 E-value=2.4e+02 Score=20.13 Aligned_cols=26 Identities=23% Similarity=0.069 Sum_probs=19.1
Q ss_pred cCCCccccCCHHHHHHHHHHHHhhcC
Q psy5431 231 IMGSWKKEMSPELVKKFDEWTEMNGI 256 (271)
Q Consensus 231 ~~G~Wk~~fs~~~~~~~~~~~~e~l~ 256 (271)
..|..++.+|+++.+.+.+.+.+.-.
T Consensus 50 ~~g~~~~~l~~~~~~~l~~~~~~~p~ 75 (112)
T PF13551_consen 50 RGGRPRKRLSEEQRAQLIELLRENPP 75 (112)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555999999999888887543
Done!