RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5431
(271 letters)
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 206 bits (525), Expect = 5e-66
Identities = 88/255 (34%), Positives = 132/255 (51%), Gaps = 25/255 (9%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQ---RFPFLEAVSIINQNDLIQENGTLFGDTIS 59
GTTW QE++ L+ N D++ ++ L R PFLE + D+ +
Sbjct: 13 GTTWLQEILSLIPNRGDFEKFEEPHLFNPHNRSPFLEWYDLFVIFDV--------AEGPV 64
Query: 60 FVQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGY--EGS 117
+ SPR IK+HLP+ LLPK +W KIIY+ R PKD AVSY+H R+ G+
Sbjct: 65 RLNALPSPRIIKTHLPLHLLPKSLWDPNAKIIYLVRNPKDVAVSYYHFFRMAKILKAPGT 124
Query: 118 FDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEK 177
+F++ FL KV ++ HV + KL + N+L YED++ + IKK A+FL
Sbjct: 125 PFEFVEDFLNGKVNCGSYFDHVKGWWKL-RPPGNILFLRYEDLKKDPRGEIKKIAEFLGI 183
Query: 178 PISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKK 237
P+++++L K+ HLSF++MK NP + Y F RKG++G WK
Sbjct: 184 PLTEEELDKIVKHLSFENMKGNPC-----------LNYSKLPKHEVSPFFRKGLVGDWKN 232
Query: 238 EMSPELVKKFDEWTE 252
+ E +KFDE +
Sbjct: 233 YFTVEQAEKFDEIYQ 247
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 94.2 bits (234), Expect = 2e-22
Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 25/255 (9%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW + L + + N +D + LL +R P E V I E F ++ ++
Sbjct: 91 GTTWLKALTFAIANRSRFDDSSNPLL-KRNPH-EFVPYI-------EIDFPFFPSVDVLK 141
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVS---YFHHHRLWNGYEGSFD 119
++ + F +H+P LLP + K++Y+ R+PKD +S + H R G S +
Sbjct: 142 DKGNTLF-STHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLE 200
Query: 120 DFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPN-VLVNSYEDMQLNLPEVIKKTAKFLEKP 178
+ F VY P+ HV Y K + P+ +L YE M+ + +K+ A+F+
Sbjct: 201 ESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYG 260
Query: 179 ISDKQ-----LKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMG 233
+ ++ ++K+ SF+++KN A GE+ + D P + RKG +G
Sbjct: 261 FTAEEEEKGVVEKVVKLCSFETLKNLEANKGEK------DREDRPAVYANSAYFRKGKVG 314
Query: 234 SWKKEMSPELVKKFD 248
W+ ++PE+ + D
Sbjct: 315 DWQNYLTPEMAARID 329
>gnl|CDD|203578 pfam07090, DUF1355, Protein of unknown function (DUF1355). This
family consists of several hypothetical bacterial
proteins of around 250 residues in length. The function
of this family is unknown. THe structure of this domain
was solved by the Midwest Center for Structural Genomics
(MCSG). The structure has been classified as part of the
Class-I Glutamine amidotransferase superfamily.
Length = 183
Score = 30.1 bits (68), Expect = 0.77
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 27 LLLQRFPFLEAVSIINQNDLIQE---NGT---LFGDTISFVQEQQSPRF----IKSHLPV 76
LLLQ + + N+ DLI + NG + G +SF + R+ + LPV
Sbjct: 80 LLLQPDTWYRSKIPPNRLDLIADYVANGGALLMVGGYLSFQGIEGKARYANTPLAEVLPV 139
Query: 77 QLLPKDIWVKKP 88
L D V+KP
Sbjct: 140 TPLDGDDRVEKP 151
>gnl|CDD|239785 cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate
kinase (NAGK) of the fungal arginine-biosynthetic
pathway (fArgBP). The nuclear-encoded, mitochondrial
polyprotein precursor with an N-terminal NAGK (ArgB)
domain (this CD), a central DUF619 domain, and a
C-terminal reductase domain (ArgC, N-Acetylglutamate
Phosphate Reductase, NAGPR). The precursor is cleaved in
the mitochondria into two distinct enzymes (NAGK-DUF619
and NAGPR). Native molecular weights of these proteins
indicate that the kinase is an octamer whereas the
reductase is a dimer. This CD also includes some
gamma-proteobacteria (Xanthomonas and Xylella) NAG
kinases with an N-terminal NAGK (ArgB) domain (this CD)
and a C-terminal DUF619 domain. The DUF619 domain is
described as a putative distant homolog of the
acetyltransferase, ArgA, predicted to function in NAG
synthase association in fungi. Eukaryotic sequences have
an N-terminal mitochondrial transit peptide. Members of
this NAG kinase domain CD belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 248
Score = 27.3 bits (61), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 26 KLLLQRFPFLEAVSIINQNDLIQENGTLFGD 56
K LL P +VSI + +DL +E T G
Sbjct: 214 KELLDTLPRSSSVSITSPDDLQKELFTHSGA 244
>gnl|CDD|182771 PRK10840, PRK10840, transcriptional regulator RcsB; Provisional.
Length = 216
Score = 27.1 bits (60), Expect = 9.2
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 182 KQLKKLTNHLSFD--SMKNNPAING---EEFIKDVIVKYDMPRDDPE-LTFIRKGIMGSW 235
K +K+ LS +M NNPAI + I+ +++K P D P+ L ++KG
Sbjct: 72 KYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG----- 126
Query: 236 KKEMSPELVKKFDEWTEMNGIED 258
K+ +PE V + E G D
Sbjct: 127 -KKFTPESVSRLLEKISAGGYGD 148
>gnl|CDD|183499 PRK12396, PRK12396, 5-methylribose kinase; Reviewed.
Length = 409
Score = 27.5 bits (61), Expect = 9.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 166 EVIKKTAKFLEKPI-SDKQLKKLTNHLSFDSMKNNPA-INGEEFIKDVIVKYDMPRD-DP 222
E+ ++ + I SDK+L+ L F M N A I+G+ V VK D + DP
Sbjct: 192 ELFPLNEGWIREHIYSDKELRLEVAKLKFSFMTNAQALIHGDLHTGSVFVKNDSTKVIDP 251
Query: 223 ELTFIRKGIMG 233
E F G MG
Sbjct: 252 EFAFY--GPMG 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,365,214
Number of extensions: 1386977
Number of successful extensions: 1354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 28
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)