RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5431
(271 letters)
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 249 bits (637), Expect = 1e-82
Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GT W E++ L+ + D + + +R P++E + +
Sbjct: 54 GTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVE-----------------SEIGYTALS 96
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
E +SPR SHLP+QL PK + K K+IY+ R P+D VS + + + S+++
Sbjct: 97 ETESPRLFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFLKKPKSWEE 156
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+ + F + V+Y ++ H++ + + + N L+ SYE+++ + I+K +FL K +
Sbjct: 157 YFEWFCQGTVLYGSWFDHIHGWMPM-REEKNFLLLSYEELKQDTGRTIEKICQFLGKTLE 215
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++L + + SF SMK N N D + +RKG+ G WK +
Sbjct: 216 PEELNLILKNSSFQSMKENKMSNYSLLSVD--------YVVDKTQLLRKGVSGDWKNHFT 267
Query: 241 PELVKKFDEWTEMN 254
+ FD+ +
Sbjct: 268 VAQAEDFDKLFQEK 281
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 248 bits (636), Expect = 1e-82
Identities = 83/252 (32%), Positives = 131/252 (51%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ L+ NN D + K+ + +R PF+E + + + +
Sbjct: 50 GTTWVSEILDLIYNNGDAEKCKRDAIYKRVPFMELII------------PGITNGVEMLN 97
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
SPR +K+HLPVQLLP W KIIYV R KD VSY++ +++ G++++
Sbjct: 98 NMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEE 157
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ F+ +V + P++ HV S+ + + +L YEDM+ N I+K KFLEK I
Sbjct: 158 FLEKFMAGQVSFGPWYDHVKSWWE-KRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIP 216
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++ L K+ H SF MK NP+ N +K+ + D F+RKGI G WK + +
Sbjct: 217 EEILNKILYHSSFSVMKENPSANYTTMMKEEM-------DHSVSPFMRKGISGDWKNQFT 269
Query: 241 PELVKKFDEWTE 252
+KF+E
Sbjct: 270 VAQYEKFEEDYV 281
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 242 bits (619), Expect = 6e-80
Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 22/254 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E+V+++ D + K+ + R P+LE + I ++
Sbjct: 52 GTTWISEVVYMIYKEGDVEKCKEDAIFNRIPYLEC------------RNEDLINGIKQLK 99
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
E++SPR +K+HLP +LLP W K K+IY+ R KD AVSY++ + Y SF +
Sbjct: 100 EKESPRIVKTHLPPKLLPASFWEKNCKMIYLCRNAKDVAVSYYYFLLMITSYPNPKSFSE 159
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ F++ +V Y ++ HV ++ + VL YEDM+ ++ + K +FLE+ S
Sbjct: 160 FVEKFMQGQVPYGSWYDHVKAWWEK-SKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPS 218
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ + ++ H SF MKNNP+ N ++++ + F+RKGI+G WK
Sbjct: 219 AELVDRIIQHTSFQEMKNNPSTNYTMMPEEMM-------NQKVSPFMRKGIIGDWKNHFP 271
Query: 241 PELVKKFDEWTEMN 254
L ++FDE +
Sbjct: 272 EALRERFDEHYKQQ 285
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 240 bits (613), Expect = 5e-79
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW QE+V ++ N D + ++ ++ R PF+E + +
Sbjct: 51 GTTWIQEIVDMIEQNGDVEKCQRAIIQHRHPFIEWAR------------PPQPSGVEKAK 98
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
SPR +K+HL QLLP W K +YV R KD VSY+H R+ + G++++
Sbjct: 99 AMPSPRILKTHLSTQLLPPSFWENNCKFLYVARNAKDCMVSYYHFQRMNHMLPDPGTWEE 158
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+ + F+ KVV+ ++ HV + ++ K +L YED++ + I+K +F+ K +
Sbjct: 159 YFETFINGKVVWGSWFDHVKGWWEM-KDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVD 217
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ L K+ SF+ MK NP N K ++ D +F+RKG +G WK +
Sbjct: 218 ETVLDKIVQETSFEKMKENPMTNRSTVSKSIL-------DQSISSFMRKGTVGDWKNHFT 270
Query: 241 PELVKKFDEWTE 252
++FDE
Sbjct: 271 VAQNERFDEIYR 282
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 239 bits (611), Expect = 1e-78
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ L+ D + + +R P+ E + +
Sbjct: 59 GTTWMIEIICLILKEGDPSWIRSVPIWERAPWCETIVGAFS-----------------LP 101
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
+Q SPR + SHLP+Q+ K + K K+IY+ R P+D VS +H+ ++ + G+ D
Sbjct: 102 DQYSPRLMSSHLPIQIFTKAFFSSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQ 161
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ FL+ +V + ++ H+ + ++ K N L +YE++Q +L +++ FL +P+
Sbjct: 162 FLRDFLKGEVQFGSWFDHIKGWLRM-KGKDNFLFITYEELQQDLQGSVERICGFLGRPLG 220
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ L + H +F +MK N N ++ D F+RKG+ G WK +
Sbjct: 221 KEALGSVVAHSTFSAMKANTMSNYTLLPPSLL-------DHRRGAFLRKGVCGDWKNHFT 273
Query: 241 PELVKKFDEWTE 252
+ FD
Sbjct: 274 VAQSEAFDRAYR 285
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 240 bits (614), Expect = 2e-78
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ L+ D + + +R P+ E + +
Sbjct: 57 GTTWMIEIICLILKEGDPSWIRSVPIWERAPWCETIVGAFS-----------------LP 99
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
+Q SPR + SHLP+Q+ K + K K+IY+ R P+D VS +H+ ++ + G+ D
Sbjct: 100 DQYSPRLMSSHLPIQIFTKAFFSSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQ 159
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ FL+ +V + ++ H+ + ++ K N L +YE++Q +L +++ FL +P+
Sbjct: 160 FLRDFLKGEVQFGSWFDHIKGWLRM-KGKDNFLFITYEELQQDLQGSVERICGFLGRPLG 218
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ L + H +F +MK N N ++ D F+RKG+ G WK +
Sbjct: 219 KEALGSVVAHSTFSAMKANTMSNYTLLPPSLL-------DHRRGAFLRKGVCGDWKNHFT 271
Query: 241 PELVKKFDEWTE 252
+ FD
Sbjct: 272 VAQSEAFDRAYR 283
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 238 bits (608), Expect = 3e-78
Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 21/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ ++ N+ D + K+ L R FLE + + FV
Sbjct: 59 GTTWMHEILDMILNDGDVEKCKRAQTLDRHAFLELKFPHKEKP-----------DLEFVL 107
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
E SP+ IK+HLP L+P IW + KI+YV R PKD VSY+H HR+ + + ++
Sbjct: 108 EMSSPQLIKTHLPSHLIPPSIWKENCKIVYVARNPKDCLVSYYHFHRMASFMPDPQNLEE 167
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F + F+ KVV ++ HV + K M +L YED++ + I+K KFLEK IS
Sbjct: 168 FYEKFMSGKVVGGSWFDHVKGWWAA-KDMHRILYLFYEDIKKDPKREIEKILKFLEKDIS 226
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++ L K+ H SFD MK NP N ++ D F+RKG+ G WK +
Sbjct: 227 EEILNKIIYHTSFDVMKQNPMTNYTTLPTSIM-------DHSISPFMRKGMPGDWKNYFT 279
Query: 241 PELVKKFDEWTE 252
++FD+ +
Sbjct: 280 VAQNEEFDKDYQ 291
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 236 bits (604), Expect = 1e-77
Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 21/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ ++ N+ D + K+ + ++ P LE L I ++
Sbjct: 52 GTTWVSEIIDMILNDGDIEKCKRGFITEKVPMLEMTLP-----------GLRTSGIEQLE 100
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
+ SPR +K+HLP LLPK W K+IY+ R KD +VSY+H + N + G++++
Sbjct: 101 KNPSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEE 160
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+++ FL KV Y +++HV ++ K K +L YEDM+ N E IKK +FLEK ++
Sbjct: 161 YLEKFLTGKVAYGSWFTHVKNWWK-KKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLN 219
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
D+ L ++ +H SF+ MK+NP +N V+ D + F+RKG G WK +
Sbjct: 220 DEILDRIIHHTSFEVMKDNPLVNYTHLPTTVM-------DHSKSPFMRKGTAGDWKNYFT 272
Query: 241 PELVKKFDEWTE 252
+KFD E
Sbjct: 273 VAQNEKFDAIYE 284
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 233 bits (597), Expect = 1e-76
Identities = 88/252 (34%), Positives = 127/252 (50%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTWTQE+V L+ N D + +K+ QRFPFLE G +
Sbjct: 53 GTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEM------------KIPSLGSGLEQAH 100
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
SPR +K+HLP LLP + K KIIYV R PKD VSY+H R+ G++++
Sbjct: 101 AMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEE 160
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+ + FL KV + + HV + + K +L YEDM+ N I+K A+F+ K +
Sbjct: 161 YFETFLAGKVCWGSWHEHVKGWWEA-KDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLD 219
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
DK L K+ ++ SFD MK NP N +++ D F+RKG +G WKK +
Sbjct: 220 DKVLDKIVHYTSFDVMKQNPMANYSSIPAEIM-------DHSISPFMRKGAVGDWKKHFT 272
Query: 241 PELVKKFDEWTE 252
++FDE +
Sbjct: 273 VAQNERFDEDYK 284
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 233 bits (596), Expect = 1e-76
Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW +++ ++ D + + + R PFLE + ++
Sbjct: 50 GTTWVSQILDMIYQGGDLEKCHRAPIFMRVPFLEF------------KAPGIPSGMETLK 97
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
+ +PR +K+HLP+ LLP+ + +K K++YV R KD AVSY+H + + G++D
Sbjct: 98 DTPAPRLLKTHLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDS 157
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ F+ +V Y ++ HV + +L VL YEDM+ N I+K +F+ +
Sbjct: 158 FLEKFMVGEVSYGSWYQHVQEWWEL-SRTHPVLYLFYEDMKENPKREIQKILEFVGHSLP 216
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++ + + H SF MK NP N ++ + P F+RKG+ G WK +
Sbjct: 217 EETVDFMVQHTSFKEMKKNPMTNYTTVPQEFMDHSISP-------FMRKGMAGDWKTTFT 269
Query: 241 PELVKKFDEWTE 252
++FD
Sbjct: 270 VAQNERFDADYA 281
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 228 bits (584), Expect = 7e-75
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 40/254 (15%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GT+ QE+V+L+ D D + ++ P LE + ++
Sbjct: 57 GTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLE----------------YPQPGLDIIK 100
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
E SPR IKSHLP + LP D+ K+IY+ R PKD VSY+ HR Y G+F +
Sbjct: 101 ELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQE 160
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F + F+ DK+ Y ++ HV + + + NVL YEDM +L ++++ A+FL
Sbjct: 161 FCRRFMNDKLGYGSWFEHVQEFWEH-RMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCD 219
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
QL+ LT H + + E + +G +G WK +
Sbjct: 220 KAQLEALTEHCHQLVDQCC---------------------NAEALPVGRGRVGLWKDIFT 258
Query: 241 PELVKKFDEWTEMN 254
+ +KFD +
Sbjct: 259 VSMNEKFDLVYKQK 272
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 225 bits (575), Expect = 5e-73
Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 26/257 (10%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKL--LLQRFPFLEAVSIINQNDLIQENGTLFGDTISF 60
GTTW + LV+ L N + + LL P L + G +
Sbjct: 77 GTTWLKALVFALLNRHKFPVSSSGNHPLLVTNPHLLVPFL---------EGVYYESPDFD 127
Query: 61 VQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN---GYEGS 117
SPR + +H+ LP+ + KI+Y R PKD VS +H + +
Sbjct: 128 FSSLPSPRLMNTHISHLSLPESVKSSSCKIVYCCRNPKDMFVSLWHFGKKLAPEETADYP 187
Query: 118 FDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMP-NVLVNSYEDMQLNLPEVIKKTAKFLE 176
+ ++AF E K + PFW H+ Y ++ P VL +YE+++ +K+ A+FLE
Sbjct: 188 IEKAVEAFCEGKFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLE 247
Query: 177 KPISDK-QLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSW 235
++ +++++ SF+S+ N + +P TF RKG +G W
Sbjct: 248 CGFIEEEEVREIVKLCSFESLSNLEVNKEGK----------LPNGIETKTFFRKGEIGGW 297
Query: 236 KKEMSPELVKKFDEWTE 252
+ +S L ++ D E
Sbjct: 298 RDTLSESLAEEIDRTIE 314
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 216 bits (551), Expect = 5e-69
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 32/272 (11%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDL---------------- 46
GTT TQELVWL+ N+ +++ AK + L R+ +L+ I +
Sbjct: 75 GTTMTQELVWLIENDLNFEAAKTYMSL-RYIYLDGFMIYDPEKQEEYNDILPNPENLDME 133
Query: 47 ----IQENGTLFGDTISFVQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAV 102
+ E + G ++ RF+K+HLP+ L+P ++ K++Y+ R+P+D AV
Sbjct: 134 RYLGLLEYSSRPGSSLLAAVPPTEKRFVKTHLPLSLMPPNML-DTVKMVYLARDPRDVAV 192
Query: 103 SYFHHHRLWN--GYEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDM 160
S FHH RL + +F DF + F +P++ HV +H PN+L YED
Sbjct: 193 SSFHHARLLYLLNKQSNFKDFWEMFHRGLYTLTPYFEHVKEAWAK-RHDPNMLFLFYEDY 251
Query: 161 QLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRD 220
+LP I + A FL K +S++Q+++L HL+F+ KNN A+N E++ + I
Sbjct: 252 LKDLPGCIARIADFLGKKLSEEQIQRLCEHLNFEKFKNNGAVNMEDYREIGI-------L 304
Query: 221 DPELTFIRKGIMGSWKKEMSPELVKKFDEWTE 252
FIRKG G W+ E+ K+ ++W +
Sbjct: 305 ADGEHFIRKGKAGCWRDYFDEEMTKQAEKWIK 336
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 208 bits (531), Expect = 8e-67
Identities = 36/262 (13%), Positives = 80/262 (30%), Gaps = 33/262 (12%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
G W + ++ +T + P LE + +
Sbjct: 32 GGHWLRCMLTSYVTGEPVETWP--GIQAGVPHLEGLLRDGEAPS---------------A 74
Query: 63 EQQSPRFIKSHLPVQLLPKDIWV-KKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDF 121
+ + +H + K++ + R P+DA +S + +
Sbjct: 75 DPDEQVLLATHFTADRPVLRFYRESTAKVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKI 134
Query: 122 MKAFLEDK--------VVYSPFWSHVNSYKKLAKHM---PNVLVNSYEDMQLNLPEVIKK 170
+ F+ D+ + ++ S+ VL YED++ + + K
Sbjct: 135 AETFIADEGFSSVRIWAGEGSWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWK 194
Query: 171 TAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKG 230
FLE D + + + + M+ + ++ + M R +L F+ KG
Sbjct: 195 VVDFLELGGRDGVADAV-ANCTLERMREMEERSKLLGLETTGL---MTRGGKQLPFVGKG 250
Query: 231 IMGSWKKEMSPELVKKFDEWTE 252
K M ++ K + +
Sbjct: 251 GQRKSLKFMGDDIEKAYADLLH 272
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 206 bits (527), Expect = 8e-66
Identities = 40/282 (14%), Positives = 89/282 (31%), Gaps = 54/282 (19%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
G TW + ++ E FGD
Sbjct: 48 GNTWVRCMLAAYITGKAPQVWNDIDAESLTL---------------EAMLRFGDLP--PA 90
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVK-KPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDF 121
E P +K+HL + ++ + K++Y+ R P+D +S + DF
Sbjct: 91 EPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDF 150
Query: 122 MKAFLED------------KVVYSPFWSHVNSYKKLAKHM---PNVLVNSYEDMQLNLPE 166
+ F+ + V + +V S+ + + +VL YED++ +
Sbjct: 151 ARKFIANEGLGWNALGAGGGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVA 210
Query: 167 VIKKTAKFLE--KPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPEL 224
+ +FL+ P+ + +++ + + M+ + ++ I
Sbjct: 211 RFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPI--------RHGD 262
Query: 225 TFIRKGIMGSWKKEMSPE---------LVKKFDEWTE--MNG 255
+ KG G + + E L + + + ++G
Sbjct: 263 ARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHG 304
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 51.4 bits (122), Expect = 7e-08
Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 10/173 (5%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSYK 143
KI+ + R P D A S + H SF + + E + + +
Sbjct: 106 AYPDAKILIMLRNPVDRAFSAYMHLVRDERETLSFRESLAKEEERIRQHYEPLWYYRAVG 165
Query: 144 KLAKHM---------PNVLVNSYEDMQLNLPEVIKKTAKFLE-KPISDKQLKKLTNHLSF 193
A + V V +E+ + +V++ FL N
Sbjct: 166 LYAAQVKRYLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGVSTDFVPDTSIRHNESGV 225
Query: 194 DSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKK 246
++ + IVK +P E R M + EM P+L ++
Sbjct: 226 PKSRSLYNFIAKPNALKEIVKPFIPAAVRERLGNRAKSMVLGRMEMEPDLREE 278
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 45.2 bits (106), Expect = 8e-06
Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSY- 142
+++ + R+P + +S + + + ++ L + + +N
Sbjct: 98 MNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNRSL 157
Query: 143 -----KKLAKHMP--NVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDS 195
+ P ++ + + + + I+K +FL+
Sbjct: 158 YHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLS----------------- 200
Query: 196 MKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKK 246
P IN F + + RD + + + + ++ P+L+ K
Sbjct: 201 ----PQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRA-HPQVDPKLLDK 246
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 43.3 bits (101), Expect = 4e-05
Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 17/174 (9%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSY- 142
+ K K++ + P D A S++ H R + F + S + N
Sbjct: 136 LLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCL 195
Query: 143 ---------KKLAKHMP--NVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHL 191
++ +LV + ++ +V+ KFL L
Sbjct: 196 VPGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGVT----NTIDYHKTL 251
Query: 192 SFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVK 245
+FD K E + K R PE+ + + + ++ + EL K
Sbjct: 252 AFDPKKGFWCQLLEGGKTKCLGKSK-GRKYPEMDLDSRAFLKDYYRDHNIELSK 304
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 42.9 bits (101), Expect = 5e-05
Identities = 20/174 (11%), Positives = 48/174 (27%), Gaps = 40/174 (22%)
Query: 89 KIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKH 148
K + + R+ + + S G++ S + + + + +
Sbjct: 155 KFLLMVRDGRASVHSMITRKVTIAGFDLSSY------RDCLTKW------NKAIEVMYAQ 202
Query: 149 MPNVLVN-----SYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAIN 203
V YE + L+ +K FL SD L + + P
Sbjct: 203 CMEVGKEKCLPVYYEQLVLHPRRSLKLILDFLGIAWSDAV-------LHHEDLIGKPGGV 255
Query: 204 GEEFIKDVIVKYDMPRDDPELTFIRKGI----MGSWKKEMSPELVKKFDEWTEM 253
+ + + + K + + W + ++V+ + M
Sbjct: 256 ------------SLSKIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPM 297
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 43.0 bits (100), Expect = 5e-05
Identities = 13/110 (11%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSYK 143
++I+ R+P A S + RL + + + + ++ + +
Sbjct: 262 VFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPLR 321
Query: 144 KLAKHMP-NVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLS 192
+ Y +M + +V+++ ++ ++P++ + ++ N L+
Sbjct: 322 ARERIGDERFFHMYYHEMMRDPMDVMRRIYEWADEPLTAETEARMRNWLA 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 43/166 (25%)
Query: 104 YFHHHRL-------WNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSY------KKLAKH-- 148
+ HHH + Y+ F AF+++ V K+ H
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHII 55
Query: 149 -MPNVLVNSY------EDMQLN-----LPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSM 196
+ + + Q + EV++ KFL PI +Q + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 197 KNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPE 242
++ + + F KY++ R P L +R+ ++ E+ P
Sbjct: 116 RDRLYNDNQVF-----AKYNVSRLQPYLK-LRQALL-----ELRPA 150
Score = 39.8 bits (92), Expect = 8e-04
Identities = 37/285 (12%), Positives = 85/285 (29%), Gaps = 84/285 (29%)
Query: 8 QELVWLLGNNF--DYDTAK-QKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQEQ 64
++++ + + F ++D Q + E II D + LF T+ QE+
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEE 77
Query: 65 QSPRFIKSHLPVQLLPKDI-WVKKPKIIYVTREPKDAAVSYFHHH-RLWNGYEGSFDDFM 122
+F++ +L + ++ P I R+P Y RL+N
Sbjct: 78 MVQKFVEE-----VLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYN---------- 121
Query: 123 KAFLEDKVVYSPFWSHVNSYKKL---------AKHMPNVLVN---------------SYE 158
D V++ + +V+ + + NVL++
Sbjct: 122 -----DNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 159 DMQLNLP-EVIKKTAKFLEKPISD-KQLKKLTNHLS------FDSMKNNP--AINGEEFI 208
+Q + ++ K P + + L+KL + D N + + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 209 KDVIVKYDMPR-----DDPELTFIRKGIMGSWKKEMSPELVKKFD 248
+ ++ + + + F+
Sbjct: 235 RRLLKSKPYENCLLVLLN------------VQ----NAKAWNAFN 263
Score = 35.6 bits (81), Expect = 0.016
Identities = 40/291 (13%), Positives = 78/291 (26%), Gaps = 113/291 (38%)
Query: 12 WL-LGNNFDYDT---AKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQEQQSP 67
WL L N +T QKLL Q I+ N + + + I
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQ----------IDPNWTSRSDHS---SNIKLRIHSIQA 232
Query: 68 RFIKSHLPVQLLPK------DIWVKKP--------KIIYVTREPK--DAAVSYFHHHRLW 111
++ L + ++ K KI+ TR + D + H
Sbjct: 233 E-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 112 NGYEGSFDD------FMK-------------------------AFLEDKVVYSPFWSHVN 140
+ + + +K + D + W HVN
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 141 SYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNP 200
K L +I+ + LE P +++ FD +
Sbjct: 352 CDK--------------------LTTIIESSLNVLE-PAEYRKM--------FDRL---- 378
Query: 201 AINGEEFIKDV--------IVKYDMPRDDPEL---TFIRKGIMGSWKKEMS 240
++ F ++ +D+ + D + + ++ KE +
Sbjct: 379 SV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Score = 34.8 bits (79), Expect = 0.028
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 104 YFH--HHRLWNGYEGSFDDFMK-----AFLEDKVVYS-PFWSHVNSYKKLAKHMPNVL-- 153
Y H HH + F FLE K+ + W+ S + N L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-------ILNTLQQ 526
Query: 154 VNSYED-MQLNLP---EVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGE 205
+ Y+ + N P ++ FL K + K T+ L M + AI E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 12/34 (35%)
Query: 176 EKPISDKQLKKLTNHLSF---DSMKNNP--AING 204
EK + LKKL L DS P AI
Sbjct: 18 EK----QALKKLQASLKLYADDSA---PALAIKA 44
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 36.7 bits (84), Expect = 0.005
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSY- 142
K K+I V R+P A+S + +F+ ++ + + +
Sbjct: 97 MSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIY 156
Query: 143 ----KKLAKHMP--NVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSM 196
+ +H P +L S E + + + + FL H F+
Sbjct: 157 AKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITD-----KHFYFNKT 211
Query: 197 KNNPAIN 203
K P +
Sbjct: 212 KGFPCLK 218
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 36.4 bits (83), Expect = 0.006
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 31/177 (17%)
Query: 84 WVKKPKIIYVTREPKDAAVS-YFHHHRLWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSY 142
K++ + REP A+S Y ++ F K ++
Sbjct: 106 MNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRT 165
Query: 143 KKLAKHM---------PNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSF 193
KH+ V + + ++ KFL P Q +L F
Sbjct: 166 SIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPELQLVEKFLNLPPRISQ-----YNLYF 220
Query: 194 DSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKKFDEW 250
++ + + E + G E+ P ++ K ++
Sbjct: 221 NATRGFYCLRFNEIFNKCLAGSK----------------GRIHPEVDPSVITKLRKF 261
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 33.4 bits (75), Expect = 0.069
Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 53 LFGDTISFVQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPK-DAAVSYF--HHHR 109
L + + ++ +S + +D+ P +I++ R AVS++ R
Sbjct: 121 LMWNQTPLLVQRAKDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTR 180
Query: 110 LWNGYEGSFDDFMKAFLEDKV--VYSPFWSHVNSYKK-LAKHMPNVLVNSYEDMQLNLPE 166
+W G D + + V + + ++ + + Y + NL E
Sbjct: 181 VWRGRPDPVRDARAEYHAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTE 240
Query: 167 VIKKTAKFLE---KPISDKQLKKLTNHLS 192
V+ + L + L++ + S
Sbjct: 241 VVGTVLEALGQDPRLAPKPVLERQADQRS 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.33
Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 115/288 (39%)
Query: 11 VWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQEQ-QSPR- 68
VW + A + F SI+ D++ N TI F E+ + R
Sbjct: 1645 VW--------NRAD-NHFKDTYGF----SIL---DIVINNPVNL--TIHFGGEKGKRIRE 1686
Query: 69 ---------FIKSHLPVQLLPKDIWVKKPKIIYVTREPKD------------AAVSY--F 105
+ L + + K+I + R K + F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 106 HH---------------HRLWNGYE--------GSFDDFMKAFLED--KVVY-------- 132
H L G E +E +VV+
Sbjct: 1745 EDLKSKGLIPADATFAGHSL--G-EYAALASLADVMS------IESLVEVVFYRGMTMQV 1795
Query: 133 -SPFWSHVNSYKKLAKHMPN--VLVNSYEDMQLNLPEVIKKTAKFLEKPI-----SDKQ- 183
P S + P S E +Q + V K+T +E I ++Q
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVENQQY 1853
Query: 184 --------LKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPE 223
L +TN L+F ++ I + ++ + ++ E
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQK---------IDIIELQKSLSLEEVE 1892
Score = 26.9 bits (59), Expect = 8.7
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 44/179 (24%)
Query: 60 FVQEQQSPRFIKS-HLPVQLLPKDIWVKKPK---------IIYVTREPKDAAVSYFHHHR 109
F+ Q +F K P + D +P + YV+ + + V F
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ-- 82
Query: 110 LWNGYEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIK 169
+F +LE +++ LA + + + E+IK
Sbjct: 83 ---VLNLCLTEFENCYLEGNDIHA-----------LAAKLL----QENDTTLVKTKELIK 124
Query: 170 KTAKFLEKPISDKQLKKLTNHLSFDSMKNNP----AI-----NGEEFIKDVIVKYDMPR 219
+ ++ + K +N F ++ AI N +++ +++ Y
Sbjct: 125 --NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 31.0 bits (71), Expect = 0.44
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 131 VYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNH 190
VY PFW K V + ++ PE + A P+ +L L
Sbjct: 148 VYGPFW------KNWQAQPKPTPVATPTELVDLSPEQLTAIA-----PLLLSELPTLKQ- 195
Query: 191 LSFDSMKNNPAINGEE--------FIKDVIVKYDMPRDDP 222
L FD P GE F I YD R+ P
Sbjct: 196 LGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFP 235
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.66
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 31/78 (39%)
Query: 212 IVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKK------------------FDEWTEM 253
I + D +PE IRK W++E L + +EW +
Sbjct: 74 IAQADRLTQEPES--IRK-----WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ- 125
Query: 254 NGIEDDDQENKQRNHEMT 271
E ++N
Sbjct: 126 -----RQSEQVEKNKINN 138
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription,
CTD, SET2 histone methyltransferase; NMR {Saccharomyces
cerevisiae}
Length = 104
Score = 27.0 bits (59), Expect = 2.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 143 KKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAI 202
K A +PN L+ + E IK+ AK + K ++ K+LKK ++ D +
Sbjct: 19 KFFASFVPN-LIKKNPQSKQFDHENIKQCAKDIVKILTTKELKKDSSRAPPDDLTKGKRH 77
Query: 203 NGEEFIKDVIVKY 215
+EFI + K
Sbjct: 78 KVKEFINSYMDKI 90
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function,
chlorobaculum tepidum T structural genomics, PSI2, MCSG;
HET: MSE; 2.10A {Oleispira antarctica rb-8}
Length = 165
Score = 27.8 bits (61), Expect = 2.8
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 42 NQNDLIQENGTLFGDTISFVQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDA- 100
N ND T FG ++ + + + + V + + Y+
Sbjct: 49 NIND----KQTAFGGSLYNAAVMACWGMVYLKTQEENIACNQVVTEGNMKYIAPVYGRIR 104
Query: 101 AVSYFHHHRLWNGYEGSFDDFMKA 124
A+ + + F+ KA
Sbjct: 105 AICHAPDEEELANFFDHFERKGKA 128
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 27.3 bits (61), Expect = 5.5
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 131 VYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNH 190
+ P + + + P + NS +++ + LE + ++
Sbjct: 180 TFRPKLYAL--LPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLK 237
Query: 191 LSFDSMKNNPAINGE--------EFIKDVIVKYDMPRDDPEL 224
+ GE FI D + Y R+DP
Sbjct: 238 NKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTK 279
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 68 RFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHH 108
+++K PK+ WV + + Y + D + HHH
Sbjct: 515 KYLKRGKSFMCTPKNEWVTEWRPKYESPGDDDDKHHHHHHH 555
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 26.9 bits (60), Expect = 8.4
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 106 HHHRLWNGYEGSFDDFMKAFLED--KVVYSPFWSHVNSYK 143
H++ GY+G +E+ V+
Sbjct: 419 HYYNPKVGYKG-----AIRLVEEITNVILDKIERECTEED 453
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,410,147
Number of extensions: 265393
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 49
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)