RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5431
(271 letters)
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 157 bits (398), Expect = 2e-47
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW QE+V ++ N D + ++ ++ R PF+E + + +
Sbjct: 40 GTTWIQEIVDMIEQNGDVEKCQRAIIQHRHPFIEWARPPQPSGVEKAK------------ 87
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRL--WNGYEGSFDD 120
SPR +K+HL QLLP W K +YV R KD VSY+H R+ G++++
Sbjct: 88 AMPSPRILKTHLSTQLLPPSFWENNCKFLYVARNAKDCMVSYYHFQRMNHMLPDPGTWEE 147
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+ + F+ KVV+ ++ HV + ++ K +L YED++ + I+K +F+ K +
Sbjct: 148 YFETFINGKVVWGSWFDHVKGWWEM-KDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVD 206
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ L K+ SF+ MK NP N K ++ D +F+RKG +G WK +
Sbjct: 207 ETVLDKIVQETSFEKMKENPMTNRSTVSKSIL-------DQSISSFMRKGTVGDWKNHFT 259
Query: 241 PELVKKFDEWTE 252
++FDE
Sbjct: 260 VAQNERFDEIYR 271
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 141 bits (357), Expect = 2e-41
Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW +++ ++ D + + + R PFLE + ++
Sbjct: 43 GTTWVSQILDMIYQGGDLEKCHRAPIFMRVPFLE------------FKAPGIPSGMETLK 90
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRL--WNGYEGSFDD 120
+ +PR +K+HLP+ LLP+ + +K K++YV R KD AVSY+H + + + G++D
Sbjct: 91 DTPAPRLLKTHLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDS 150
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ F+ +V Y ++ HV + + VL YEDM+ N I+K +F+ +
Sbjct: 151 FLEKFMVGEVSYGSWYQHVQEWWE-LSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLP 209
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++ + + H SF MK NP N ++ + D F+RKG+ G WK +
Sbjct: 210 EETVDFMVQHTSFKEMKKNPMTNYTTVPQEFM-------DHSISPFMRKGMAGDWKTTFT 262
Query: 241 PELVKKFDEWTE 252
++FD
Sbjct: 263 VAQNERFDADYA 274
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 141 bits (355), Expect = 5e-41
Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ ++ N+ D + K+ + ++ P LE + I++ ++
Sbjct: 47 GTTWVSEIIDMILNDGDIEKCKRGFITEKVPMLEMTLPGLRTSGIEQ-----------LE 95
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN--GYEGSFDD 120
+ SPR +K+HLP LLPK W K+IY+ R KD +VSY+H + N + G++++
Sbjct: 96 KNPSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEE 155
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+++ FL KV Y +++HV ++ K K +L YEDM+ N E IKK +FLEK ++
Sbjct: 156 YLEKFLTGKVAYGSWFTHVKNWWK-KKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLN 214
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
D+ L ++ +H SF+ MK+NP +N V+ D + F+RKG G WK +
Sbjct: 215 DEILDRIIHHTSFEVMKDNPLVNYTHLPTTVM-------DHSKSPFMRKGTAGDWKNYFT 267
Query: 241 PELVKKFDEWTE 252
+KFD E
Sbjct: 268 VAQNEKFDAIYE 279
>d1g3ma_ c.37.1.5 (A:) Estrogen sulfotransferase (STE, sult1e1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 133 bits (335), Expect = 4e-38
Identities = 80/252 (31%), Positives = 133/252 (52%), Gaps = 22/252 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E+V+++ D + K+ ++ R PFLE N + Q +
Sbjct: 47 GTTWVSEIVYMIYKEGDVEKCKEDVIFNRIPFLECRKENLMNGVKQLD------------ 94
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGY--EGSFDD 120
E SPR +K+HLP +LLP W K KIIY+ R KD AVS+++ + G+ GSF +
Sbjct: 95 EMNSPRIVKTHLPPELLPASFWEKDCKIIYLCRNAKDVAVSFYYFFLMVAGHPNPGSFPE 154
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ F++ +V Y ++ HV S+ + K + + YED++ ++ + + K FLE+ S
Sbjct: 155 FVEKFMQGQVPYGSWYKHVKSWWEKGKSPRVLFL-FYEDLKEDIRKEVIKLIHFLERKPS 213
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++ + ++ +H SF MKNNP+ N +++ + F+RKGI G WK +
Sbjct: 214 EELVDRIIHHTSFQEMKNNPSTNYTTLPDEIM-------NQKLSPFMRKGITGDWKNHFT 266
Query: 241 PELVKKFDEWTE 252
L +KFD+ E
Sbjct: 267 VALNEKFDKHYE 278
>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 131 bits (329), Expect = 3e-37
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 28/252 (11%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GT W E++ L+ + D + + +R P++E+ +
Sbjct: 45 GTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESEIGYTA-----------------LS 87
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYE--GSFDD 120
E +SPR SHLP+QL PK + K K+IY+ R P+D VS + + + S+++
Sbjct: 88 ETESPRLFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFLKKPKSWEE 147
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
+ + F + V+Y ++ H++ + + + N L+ SYE+++ + I+K +FL K +
Sbjct: 148 YFEWFCQGTVLYGSWFDHIHGWMPM-REEKNFLLLSYEELKQDTGRTIEKICQFLGKTLE 206
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
++L + + SF SMK N N D +V +RKG+ G WK +
Sbjct: 207 PEELNLILKNSSFQSMKENKMSNYSLLSVDYVVDKT--------QLLRKGVSGDWKNHFT 258
Query: 241 PELVKKFDEWTE 252
+ FD+ +
Sbjct: 259 VAQAEDFDKLFQ 270
>d1q44a_ c.37.1.5 (A:) Putative steroid sulfotransferase rarO47
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 320
Score = 123 bits (308), Expect = 6e-34
Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 22/255 (8%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW + LV+ L N + + P L + L G +
Sbjct: 72 GTTWLKALVFALLNRHKFPVSSSG----NHPLLVTNPHLLVPFL---EGVYYESPDFDFS 124
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEG---SFD 119
SPR + +H+ LP+ + KI+Y R PKD VS +H + E +
Sbjct: 125 SLPSPRLMNTHISHLSLPESVKSSSCKIVYCCRNPKDMFVSLWHFGKKLAPEETADYPIE 184
Query: 120 DFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPN-VLVNSYEDMQLNLPEVIKKTAKFLEKP 178
++AF E K + PFW H+ Y ++ PN VL +YE+++ +K+ A+FLE
Sbjct: 185 KAVEAFCEGKFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECG 244
Query: 179 ISD-KQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKK 237
+ ++++++ SF+S+ N + + K TF RKG +G W+
Sbjct: 245 FIEEEEVREIVKLCSFESLSNLEVNKEGKLPNGIETK----------TFFRKGEIGGWRD 294
Query: 238 EMSPELVKKFDEWTE 252
+S L ++ D E
Sbjct: 295 TLSESLAEEIDRTIE 309
>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 106 bits (264), Expect = 8e-28
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 27/252 (10%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQENGTLFGDTISFVQ 62
GTTW E++ L+ D + + +R P+ E +I+ L +
Sbjct: 55 GTTWMIEIICLILKEGDPSWIRSVPIWERAPWCE--TIVGAFSLPDQY------------ 100
Query: 63 EQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNG--YEGSFDD 120
SPR + SHLP+Q+ K + K K+IY+ R P+D VS +H+ ++ G+ D
Sbjct: 101 ---SPRLMSSHLPIQIFTKAFFSSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQ 157
Query: 121 FMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS 180
F++ FL+ +V + ++ H+ + + K N L +YE++Q +L +++ FL +P+
Sbjct: 158 FLRDFLKGEVQFGSWFDHIKGWLR-MKGKDNFLFITYEELQQDLQGSVERICGFLGRPLG 216
Query: 181 DKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMS 240
+ L + H +F +MK N N ++ D F+RKG+ G WK +
Sbjct: 217 KEALGSVVAHSTFSAMKANTMSNYTLLPPSLL-------DHRRGAFLRKGVCGDWKNHFT 269
Query: 241 PELVKKFDEWTE 252
+ FD
Sbjct: 270 VAQSEAFDRAYR 281
>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
(Spodoptera frugiperda) [TaxId: 7108]}
Length = 342
Score = 100 bits (250), Expect = 2e-25
Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 32/272 (11%)
Query: 3 GTTWTQELVWLLGNNFDYDTAKQKLLLQRFPFLEAVSIINQNDLIQ-------------- 48
GTT TQELVWL+ N+ +++ AK + L R+ +L+ I + +
Sbjct: 68 GTTMTQELVWLIENDLNFEAAKTYMSL-RYIYLDGFMIYDPEKQEEYNDILPNPENLDME 126
Query: 49 ------ENGTLFGDTISFVQEQQSPRFIKSHLPVQLLPKDIWVKKPKIIYVTREPKDAAV 102
E + G ++ RF+K+HLP+ L+P ++ K++Y+ R+P+D AV
Sbjct: 127 RYLGLLEYSSRPGSSLLAAVPPTEKRFVKTHLPLSLMPPNML-DTVKMVYLARDPRDVAV 185
Query: 103 SYFHHHRLWN--GYEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYEDM 160
S FHH RL + +F DF + F +P++ HV +H PN+L YED
Sbjct: 186 SSFHHARLLYLLNKQSNFKDFWEMFHRGLYTLTPYFEHVKEAWAK-RHDPNMLFLFYEDY 244
Query: 161 QLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRD 220
+LP I + A FL K +S++Q+++L HL+F+ KNN A+N E++ + I+
Sbjct: 245 LKDLPGCIARIADFLGKKLSEEQIQRLCEHLNFEKFKNNGAVNMEDYREIGILADGEH-- 302
Query: 221 DPELTFIRKGIMGSWKKEMSPELVKKFDEWTE 252
FIRKG G W+ E+ K+ ++W +
Sbjct: 303 -----FIRKGKAGCWRDYFDEEMTKQAEKWIK 329
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 53.0 bits (126), Expect = 6e-09
Identities = 17/176 (9%), Positives = 56/176 (31%), Gaps = 32/176 (18%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDK---------VVYSP 134
+++ + R+P + +S + + + ++ L + S
Sbjct: 87 MNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNRSL 146
Query: 135 FWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNHLSFD 194
+ +H+ ++ + + ++ + + + + I+K +FL+ ++ F+
Sbjct: 147 YHAHMLNWLRF-FPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINA-----SNFYFN 200
Query: 195 SMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKKFDEW 250
K + + G ++ P+L+ K E+
Sbjct: 201 KTKGFYCLRDSGKDR-----------------CLHESKGRAHPQVDPKLLDKLHEY 239
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 50.7 bits (120), Expect = 5e-08
Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 28/186 (15%)
Query: 73 HLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAFLEDK--- 129
K K+I V R+P A+S + +F+
Sbjct: 86 VTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLID 145
Query: 130 -----VVYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQL 184
+ + H+ + + + +L S E + + + + FL
Sbjct: 146 TSWSAIQIGIYAKHLEHWLR-HFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITD- 203
Query: 185 KKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELV 244
H F+ K P + E G E+ E+V
Sbjct: 204 ----KHFYFNKTKGFPCLKKAEGSS--------------RPHCLGKTKGRTHPEIDREVV 245
Query: 245 KKFDEW 250
++ E+
Sbjct: 246 RRLREF 251
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 49.5 bits (117), Expect = 1e-07
Identities = 25/190 (13%), Positives = 54/190 (28%), Gaps = 23/190 (12%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFM-------------KAFLEDKV 130
+ K K++ + P D A S++ H R + F +A +
Sbjct: 115 LLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCL 174
Query: 131 VYSPFWSHVNSYKKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPISDKQLKKLTNH 190
V + +H+ + ++++ + ++ +V+ KFL + K
Sbjct: 175 VPGWYATHIERWLSAYHANQILVLD-GKLLRTEPAKVMDMVQKFLGVTNTIDYHK----T 229
Query: 191 LSFDSMKNNPAINGEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKKFDEW 250
L+FD K E + K + + K + +
Sbjct: 230 LAFDPKKGFWCQLLEGGKTKCLGKSKGRKYPE----MDLDSRAFLKDYYRDH-NIELSKL 284
Query: 251 TEMNGIEDDD 260
G
Sbjct: 285 LYKMGQTLPT 294
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 42.0 bits (97), Expect = 3e-05
Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 8/135 (5%)
Query: 72 SHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAF---LED 128
+ + + I + AVS++ +
Sbjct: 119 GSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDARAEYHAGA 178
Query: 129 KVVYSPFWSHVNSY--KKLAKHMPNVLVNSYEDMQLNLPEVIKKTAKFLEKPIS---DKQ 183
+ + Y + NL EV+ + L +
Sbjct: 179 IAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQDPRLAPKPV 238
Query: 184 LKKLTNHLSFDSMKN 198
L++ + S + ++
Sbjct: 239 LERQADQRSDEWVER 253
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 29.8 bits (66), Expect = 0.21
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 84 WVKKPKIIYVTREPKDAAVSYFHHHRLWNGYEGSFDDFMKAF 125
V KP + Y+ H + G +G+ D+ A
Sbjct: 103 HVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAAL 144
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.0 bits (57), Expect = 2.3
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 153 LVNSYEDMQ-----LNLPEVIKKTAKFLEKPISDKQL 184
++N+++++ +NLP L + +++
Sbjct: 2 MMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKS 38
>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermotoga maritima [TaxId: 2336]}
Length = 205
Score = 26.8 bits (58), Expect = 2.3
Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 56 DTISFVQEQQSPRFI---KSHLPVQLLPKDIWVKKPKIIYVTREPKDAAVSYFHHHRLWN 112
D + FV +S R+I + LP ++ + + D A + +
Sbjct: 24 DAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLH 83
Query: 113 GYEGSFDDFMKAFLEDKVVYSPFWSHVNSYKKLAKHMPNVLVNSYE----------DMQL 162
G E A + + + + L +L+++ D L
Sbjct: 84 GEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSL 143
Query: 163 NLPEVIKKTAKFLEKPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKD 210
LP + L ++ + ++ + + ++ + + KD
Sbjct: 144 ILPYRDRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKD 191
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 175
Score = 25.9 bits (57), Expect = 4.3
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 204 GEEFIKDVIVKYDMPRDDPELTFIRKGIMGSWKKEMSPELVKKFDEWTEMNGIEDDDQEN 263
G+E K + ++ TF GI KK++ L + + + +
Sbjct: 75 GKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVDPFRTGFGHAKE 134
Query: 264 KQR 266
Sbjct: 135 PGS 137
>d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 25.5 bits (56), Expect = 5.9
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 177 KPISDKQLKKLTNHLSFDSMKNNPAINGEEFIKDVIVKYDMPRDDP 222
KP+ Q+ L L KN PA EEF+ D++ P D
Sbjct: 20 KPLDANQMAALVELL-----KNPPA-GEEEFLLDLLTNRVPPGVDE 59
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 24.8 bits (54), Expect = 5.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 161 QLNLPEVIKKTAKFLEKPISDKQL 184
L LP+ ++ A + + + L
Sbjct: 14 NLCLPKQVQMAATHIARKAVELDL 37
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB),
core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Length = 98
Score = 24.8 bits (54), Expect = 6.2
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 153 LVNSYEDM-----QLNLPEVIKKTAKFLEKPISDKQL 184
L + ++ QL LP +++ A L + K L
Sbjct: 2 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGL 38
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 25.5 bits (55), Expect = 7.0
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 147 KHMPNVL-VNSYEDMQLNLPEVIKKTAKFLEKPISD----KQLKKLTNH-LSFDS----- 195
+ M + S ED+ +LP+ I L +P+ + ++L++L L
Sbjct: 12 REMLRRVGAASLEDLFAHLPKEILSPPIDLPEPLPEWKVLEELRRLAAQNLPAHKAFLGG 71
Query: 196 ----MKNNPAIN 203
P +
Sbjct: 72 GVRSHHVPPVVQ 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,106,169
Number of extensions: 54261
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 28
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)