BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5433
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZLK1|DCA13_CHICK DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2
SV=1
Length = 445
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 58/81 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + +++ A++Y++ LK+K+ HHPQI+RIARHR +P+ IY E R +R ++RKE N
Sbjct: 361 GVLAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+R HS PG+VP E+++ +V
Sbjct: 421 RRKHSKPGSVPVVSEKKKHIV 441
>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2
SV=2
Length = 445
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ +HP ++RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+R HS PG+VP ER++ VV
Sbjct: 421 RRKHSKPGSVPIVSERKKHVV 441
>sp|Q803X4|DCA13_DANRE DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2
SV=1
Length = 445
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ +++ A +Y++ L QK+ HHPQ+RRIARHR +PR + + E + ++ ++RKE N
Sbjct: 361 GVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
R HS PG+VP E+++ VVK +E
Sbjct: 421 VRKHSKPGSVPLLTEKEKHVVKVVE 445
>sp|Q7ZYQ6|DCA13_XENLA DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13
PE=2 SV=1
Length = 445
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 61/85 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+ E + +R +++K+ N
Sbjct: 361 GVLSPRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
+R HS PG+VP E+++ V+ +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445
>sp|Q6NVS5|DCA13_XENTR DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13
PE=2 SV=1
Length = 445
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 61/85 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+ E + +R +++K+ N
Sbjct: 361 GLLSPRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
+R HS PG+VP E+++ V+ +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445
>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1
SV=2
Length = 445
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420
Query: 76 KRTHSAPGTVPQTKE 90
+ HS PG+VP E
Sbjct: 421 RIKHSKPGSVPLVSE 435
>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2
SV=1
Length = 445
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420
Query: 76 KRTHSAPGTVPQTKE 90
+ HS PG+VP E
Sbjct: 421 RIKHSKPGSVPIVSE 435
>sp|O74340|DCA13_SCHPO Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sof1 PE=3 SV=1
Length = 436
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 26 LDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTV 85
L Y +SL+++Y H P+IRRIARHR +P ++ A R + KR+E N R HS G V
Sbjct: 362 LKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAV 421
Query: 86 PQTKERQRAVV 96
P KER+R VV
Sbjct: 422 PYEKERERHVV 432
>sp|P33750|DCA13_YEAST Protein SOF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SOF1 PE=1 SV=1
Length = 489
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 21 KQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHS 80
+++ L+Y E LK+++ H P+I+RI+RHR VP+ I AQ S KR+E+N+R
Sbjct: 389 REKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANER--R 446
Query: 81 APGTVPQTKERQRAVV 96
+P ER++ +V
Sbjct: 447 TRKDMPYISERKKQIV 462
>sp|Q7KWL3|DCA13_DICDI DDB1- and CUL4-associated factor 13 OS=Dictyostelium discoideum
GN=wdsof1 PE=3 SV=1
Length = 445
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY 56
G ++N++++ L+Y + +K+K+ P+++ IA HR+VP+ +Y
Sbjct: 362 GILSNREKEKLEYQDKIKEKFKEIPELKTIATHRRVPQLVY 402
>sp|B7IDD1|LEXA_THEAB LexA repressor OS=Thermosipho africanus (strain TCF52B) GN=lexA
PE=3 SV=1
Length = 198
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 18 VNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPR--HIYNAQAEHRA 64
+ N+Q+ LD+ S Q+ + P IR IA+H + PR HI+ E +
Sbjct: 4 LTNRQKMVLDFITSYIQQNGYSPSIRDIAKHFKLTPRGAHIHVLALEKKG 53
>sp|O59795|CASP_SCHPO Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coy1 PE=3 SV=1
Length = 633
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 18 VNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKR 77
++N+Q+Q LD+ +SL +K + + + A +++ H Q ++ +K KE +
Sbjct: 276 LSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKEESLT 335
Query: 78 THSAPGTVPQTKERQRAVVKEME 100
+ + K R+ +V+K++E
Sbjct: 336 LANKFSDYDEIK-RELSVLKQIE 357
>sp|Q09228|EGL27_CAEEL Egg-laying defective protein 27 OS=Caenorhabditis elegans GN=egl-27
PE=2 SV=2
Length = 1129
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 36 YAHHPQIRRIA-RHRQVPRHIY---NAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKER 91
Y + Q+R+IA R QVP ++ N+ E +R++ +KE +RT P ++ +T +R
Sbjct: 466 YKKYGQLRQIANRPSQVPACLFKRSNSDEEESGVRTRAGKKEQRRRT---PSSMSETPDR 522
>sp|A5EWV0|RL25_DICNV 50S ribosomal protein L25 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rplY PE=3 SV=1
Length = 225
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 43 RRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHS 80
RR+ R VP IY E +AI KQ + N + HS
Sbjct: 24 RRLRRQGLVPAIIYGGNTEPQAIAIKQDELKKNAKNHS 61
>sp|Q5H9F3|BCORL_HUMAN BCL-6 corepressor-like protein 1 OS=Homo sapiens GN=BCORL1 PE=1 SV=1
Length = 1711
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-----RQVPRHIYNAQAEHRAIRSKQK 70
G + + Q L + +H P+ R++ ++ PR ++ EH +R K K
Sbjct: 1122 GKEKDSEEQQLQPQAKAVVRSSHRPKCRKLPSDPQESTKKSPRGASDSGKEHNGVRGKHK 1181
Query: 71 RKESNKRTHSAPGTVPQTKE 90
++ K +PG + E
Sbjct: 1182 HRKPTKPESQSPGKRADSHE 1201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,007,127
Number of Sequences: 539616
Number of extensions: 1162621
Number of successful extensions: 4440
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4394
Number of HSP's gapped (non-prelim): 74
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)