Query psy5433
Match_columns 100
No_of_seqs 102 out of 199
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04158 Sof1: Sof1-like domai 100.0 2.3E-43 5.1E-48 240.0 9.8 88 9-96 1-88 (88)
2 KOG0268|consensus 100.0 9.5E-33 2.1E-37 227.0 8.6 90 9-100 344-433 (433)
3 PF01726 LexA_DNA_bind: LexA D 82.0 2.7 5.9E-05 26.6 3.7 37 16-52 2-38 (65)
4 PF14721 AIF_C: Apoptosis-indu 67.5 0.86 1.9E-05 33.5 -1.6 21 1-21 17-37 (133)
5 PF08112 ATP-synt_E_2: ATP syn 58.7 16 0.00034 23.3 3.2 22 24-45 31-52 (56)
6 PF13487 HD_5: HD domain; PDB: 40.5 42 0.0009 20.5 3.0 35 16-50 1-40 (64)
7 KOG4204|consensus 40.4 30 0.00065 27.0 2.8 23 20-42 17-39 (231)
8 cd04877 ACT_TyrR N-terminal AC 38.3 6.6 0.00014 24.3 -0.9 24 29-52 51-74 (74)
9 PF06548 Kinesin-related: Kine 32.7 35 0.00076 29.9 2.3 28 16-43 165-198 (488)
10 PF06413 Neugrin: Neugrin; In 31.5 1.3E+02 0.0028 23.5 5.1 44 14-57 7-61 (225)
11 PF12711 Kinesin-relat_1: Kine 30.2 49 0.0011 22.5 2.2 36 11-46 12-50 (86)
12 PF05068 MtlR: Mannitol repres 29.7 54 0.0012 24.9 2.6 28 14-41 75-102 (170)
13 KOG1346|consensus 28.7 21 0.00046 31.8 0.3 19 1-19 528-546 (659)
14 PF07105 DUF1367: Protein of u 21.5 1.5E+02 0.0032 23.2 3.7 31 2-40 60-90 (196)
15 PF08573 SAE2: DNA repair prot 20.6 1.4E+02 0.003 19.9 3.0 35 11-51 42-76 (93)
No 1
>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery [].
Probab=100.00 E-value=2.3e-43 Score=239.99 Aligned_cols=88 Identities=48% Similarity=0.782 Sum_probs=86.6
Q ss_pred CcchhhcCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q psy5433 9 ELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQT 88 (100)
Q Consensus 9 ~~ase~lG~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvPK~I~ka~~~k~~~~~a~kRKE~Nrr~HSk~g~v~~~ 88 (100)
+.||++||+||+||+++++|+++|+|||+|||||+||++||||||+||+|++++++|.+|++|||+|+++||++|++|++
T Consensus 1 A~ASeklG~ls~REr~~l~Y~~~Lkekyk~~pEIrRI~rhRhvPK~I~~a~~~k~~~~~a~~RKe~nrr~hsk~~~~~~~ 80 (88)
T PF04158_consen 1 ANASEKLGVLSPRERAALEYREALKEKYKHMPEIRRIARHRHVPKAIKKAQKIKREMKEAEKRKEENRRKHSKPGAVPPK 80 (88)
T ss_pred CCcchhcCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh
Q psy5433 89 KERQRAVV 96 (100)
Q Consensus 89 ~erkK~vv 96 (100)
+||+++||
T Consensus 81 ~erkk~vv 88 (88)
T PF04158_consen 81 PERKKHVV 88 (88)
T ss_pred cccccCCC
Confidence 99999997
No 2
>KOG0268|consensus
Probab=99.98 E-value=9.5e-33 Score=227.00 Aligned_cols=90 Identities=39% Similarity=0.737 Sum_probs=87.7
Q ss_pred CcchhhcCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q psy5433 9 ELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQT 88 (100)
Q Consensus 9 ~~ase~lG~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvPK~I~ka~~~k~~~~~a~kRKE~Nrr~HSk~g~v~~~ 88 (100)
..||++||++|+||+++++|+++|||||+|+|||+|||||||||++|++|+++++++.+|++|||.|+++||++ +|+.
T Consensus 344 a~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~ 421 (433)
T KOG0268|consen 344 AKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYA 421 (433)
T ss_pred cchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred hhhhhhhhhccC
Q psy5433 89 KERQRAVVKEME 100 (100)
Q Consensus 89 ~erkK~vv~~~e 100 (100)
+||+++||++++
T Consensus 422 ~~~kk~vv~~~~ 433 (433)
T KOG0268|consen 422 PERKKHIVGEVE 433 (433)
T ss_pred hhhcceeeeecC
Confidence 999999999865
No 3
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=82.04 E-value=2.7 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCC
Q psy5433 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP 52 (100)
Q Consensus 16 G~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvP 52 (100)
-.||+||++-++|-..-.+.+..-|-|+.|++|=.+-
T Consensus 2 ~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~ 38 (65)
T PF01726_consen 2 KELTERQKEVLEFIREYIEENGYPPTVREIAEALGLK 38 (65)
T ss_dssp ----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC
Confidence 3689999999999999999999999999999999884
No 4
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=67.46 E-value=0.86 Score=33.54 Aligned_cols=21 Identities=38% Similarity=1.020 Sum_probs=17.4
Q ss_pred CCccCCCCCcchhhcCCCCHH
Q psy5433 1 MFWSPVGPELSFRVKGYVNNK 21 (100)
Q Consensus 1 ~~~~~~~~~~ase~lG~ls~R 21 (100)
||||-+||..-.|-+|.++.+
T Consensus 17 ~fwSdlgp~vgyeAvG~~DS~ 37 (133)
T PF14721_consen 17 MFWSDLGPDVGYEAVGIVDSS 37 (133)
T ss_dssp EEEEESSTTEEEEEEES--TT
T ss_pred hhHhhcCCCcCeEEeeeccCC
Confidence 899999999999999998764
No 5
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=58.73 E-value=16 Score=23.29 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q psy5433 24 QALDYSESLKQKYAHHPQIRRI 45 (100)
Q Consensus 24 ~al~Y~~~LkeKykh~PEIkRI 45 (100)
-..+|+..|+.|++.+.||+|=
T Consensus 31 ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 31 LNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999983
No 6
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=40.48 E-value=42 Score=20.45 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCHHHHHHH----HHHHHHHHHHhhhH-HHHHHHhhhc
Q psy5433 16 GYVNNKQRQAL----DYSESLKQKYAHHP-QIRRIARHRQ 50 (100)
Q Consensus 16 G~ls~REr~al----~Y~~~LkeKykh~P-EIkRIarHRh 50 (100)
|.||+.|++.+ .|...|.+....++ .|..|..+.|
T Consensus 1 G~Lt~~e~~~~~~Hp~~~~~~l~~~~~l~~~v~~~i~~hh 40 (64)
T PF13487_consen 1 GKLTPEEREIIQQHPEYGAELLSQIPRLSPEVADIILQHH 40 (64)
T ss_dssp -GS-HHHHHHHHHHHHHHHHHHTT-TTS-HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhc
Confidence 67788887654 35555666666555 7777776665
No 7
>KOG4204|consensus
Probab=40.39 E-value=30 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q psy5433 20 NKQRQALDYSESLKQKYAHHPQI 42 (100)
Q Consensus 20 ~REr~al~Y~~~LkeKykh~PEI 42 (100)
..--.|+.|-+++|++|++.|++
T Consensus 17 ~t~~DAlsYl~~VK~~f~d~p~k 39 (231)
T KOG4204|consen 17 LTLDDALAYLKAVKEAFQDEPEK 39 (231)
T ss_pred CChHHHHHHHHHHHHHHhcChHH
Confidence 45678999999999999999875
No 8
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=38.29 E-value=6.6 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhHHHHHHHhhhcCC
Q psy5433 29 SESLKQKYAHHPQIRRIARHRQVP 52 (100)
Q Consensus 29 ~~~LkeKykh~PEIkRIarHRhvP 52 (100)
-+.|.++-+.+|-|..+.||+++|
T Consensus 51 L~~li~~L~~i~gV~~V~R~~~~~ 74 (74)
T cd04877 51 LQTLMPEIRRIDGVEDVKTVPYMP 74 (74)
T ss_pred HHHHHHHHhCCCCceEEEEeecCC
Confidence 478999999999999999999998
No 9
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=32.67 E-value=35 Score=29.91 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHhhhHHHH
Q psy5433 16 GYVNNKQRQALDYSES------LKQKYAHHPQIR 43 (100)
Q Consensus 16 G~ls~REr~al~Y~~~------LkeKykh~PEIk 43 (100)
|+++..|--..+|... |+++|.|+|||-
T Consensus 165 g~l~~~e~~~ee~~sl~~e~KlLk~~~en~pevl 198 (488)
T PF06548_consen 165 GVLPTEEFIDEEYVSLMHEHKLLKEKYENHPEVL 198 (488)
T ss_pred cccchHHHhhhHhhhhhhHhhhhhhhccCchHHH
Confidence 8889888877777644 899999999873
No 10
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=31.51 E-value=1.3e+02 Score=23.51 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=33.5
Q ss_pred hcCCCCHHHHHHHHHH----------HHHHHHHhhhHH-HHHHHhhhcCCHHHHH
Q psy5433 14 VKGYVNNKQRQALDYS----------ESLKQKYAHHPQ-IRRIARHRQVPRHIYN 57 (100)
Q Consensus 14 ~lG~ls~REr~al~Y~----------~~LkeKykh~PE-IkRIarHRhvPK~I~k 57 (100)
+-..||.-+.+.+-|. +.|-|.|.--|| |+||.+...+|..-..
T Consensus 7 p~k~Ls~~~~~~ir~L~~~~p~~~t~~~Lae~F~vspe~irrILkskw~p~~~~~ 61 (225)
T PF06413_consen 7 PPKKLSREAMEQIRYLHKEDPEEWTVERLAESFKVSPEAIRRILKSKWVPTEEEK 61 (225)
T ss_pred CCCCCCHHHHHHHHHHHHhCccccCHHHHHhhCCCCHHHHHHHHhcCCCCCHHHH
Confidence 3455777777766553 568999999998 7999999999986443
No 11
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=30.23 E-value=49 Score=22.55 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=23.3
Q ss_pred chhhcCCCCHHHHH---HHHHHHHHHHHHhhhHHHHHHH
Q psy5433 11 SFRVKGYVNNKQRQ---ALDYSESLKQKYAHHPQIRRIA 46 (100)
Q Consensus 11 ase~lG~ls~REr~---al~Y~~~LkeKykh~PEIkRIa 46 (100)
.+..++..+.=+.. -.+=-+.|.+++-|+|+|-|.|
T Consensus 12 ~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A 50 (86)
T PF12711_consen 12 LDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFA 50 (86)
T ss_pred hcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34444444443333 3344568899999999998875
No 12
>PF05068 MtlR: Mannitol repressor; InterPro: IPR007761 The mannitol operon of Escherichia coli, encoding the mannitol-specific enzyme II of the phosphotransferase system (MtlA) and mannitol phosphate dehydrogenase (MtlD) contains an additional downstream open reading frame which encodes the mannitol repressor (MtlR).; PDB: 3C8G_C 3BRJ_D.
Probab=29.70 E-value=54 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=23.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhHH
Q psy5433 14 VKGYVNNKQRQALDYSESLKQKYAHHPQ 41 (100)
Q Consensus 14 ~lG~ls~REr~al~Y~~~LkeKykh~PE 41 (100)
-||++|.-+.+.+++--+|++.|.|-++
T Consensus 75 ~LG~Is~~~y~Die~~~klrn~l~h~~~ 102 (170)
T PF05068_consen 75 ALGLISKEEYEDIELFRKLRNELNHDPE 102 (170)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHHHHCTSS
T ss_pred HcCCCCHHHHhhHHHHHHHHHHHhcCCc
Confidence 3799999999999999999999999754
No 13
>KOG1346|consensus
Probab=28.75 E-value=21 Score=31.78 Aligned_cols=19 Identities=47% Similarity=1.148 Sum_probs=16.6
Q ss_pred CCccCCCCCcchhhcCCCC
Q psy5433 1 MFWSPVGPELSFRVKGYVN 19 (100)
Q Consensus 1 ~~~~~~~~~~ase~lG~ls 19 (100)
||||-.||..-.+-+|...
T Consensus 528 mFWsdlgP~igyeaIGlvD 546 (659)
T KOG1346|consen 528 MFWSDLGPEIGYEAIGLVD 546 (659)
T ss_pred eeeeccCcccccceeeecc
Confidence 8999999999888888664
No 14
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=21.47 E-value=1.5e+02 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=19.2
Q ss_pred CccCCCCCcchhhcCCCCHHHHHHHHHHHHHHHHHhhhH
Q psy5433 2 FWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHP 40 (100)
Q Consensus 2 ~~~~~~~~~ase~lG~ls~REr~al~Y~~~LkeKykh~P 40 (100)
+|.|.| |.+|+.|+.-.+==-....-|...+
T Consensus 60 yW~P~g--------g~is~~E~~lv~g~v~~la~~~g~~ 90 (196)
T PF07105_consen 60 YWEPTG--------GTISPAERKLVRGFVKFLASYAGSE 90 (196)
T ss_pred HccCCC--------CccCHHHHHHHHHHHHHHHHHhCCH
Confidence 588887 8899999875543333333343333
No 15
>PF08573 SAE2: DNA repair protein endonuclease SAE2/CtIP C-terminus; InterPro: IPR013882 SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling [, ]. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein []. It is now known to be an endonuclease. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions [].
Probab=20.56 E-value=1.4e+02 Score=19.93 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=21.5
Q ss_pred chhhcCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcC
Q psy5433 11 SFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV 51 (100)
Q Consensus 11 ase~lG~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhv 51 (100)
....|+.++..|+..+.=... --.-+..+.||||.
T Consensus 42 ~~~~l~~~~~~~~~~~~~eak------~~~~~~~~sRHR~~ 76 (93)
T PF08573_consen 42 DAYELPTMSEEERKELLIEAK------KKELANKFSRHRYR 76 (93)
T ss_pred hhhhcccccHHHHHHHHHHHH------HHHHHHHhccCCCC
Confidence 345677777777665433333 22346788899986
Done!