Your job contains 1 sequence.
>psy5433
MFWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA
EHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5433
(100 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036500 - symbol:CG7275 species:7227 "Drosophila m... 218 2.6e-17 1
RGD|1308458 - symbol:Dcaf13 "DDB1 and CUL4 associated fac... 213 9.3e-17 1
UNIPROTKB|Q5ZLK1 - symbol:DCAF13 "DDB1- and CUL4-associat... 210 2.0e-16 1
MGI|MGI:2684929 - symbol:Dcaf13 "DDB1 and CUL4 associated... 209 2.5e-16 1
UNIPROTKB|Q7ZYQ6 - symbol:dcaf13 "DDB1- and CUL4-associat... 208 3.3e-16 1
UNIPROTKB|Q6NVS5 - symbol:dcaf13 "DDB1- and CUL4-associat... 207 4.2e-16 1
ZFIN|ZDB-GENE-040426-703 - symbol:dcaf13 "ddb1 and cul4 a... 207 4.2e-16 1
UNIPROTKB|Q9NV06 - symbol:DCAF13 "DDB1- and CUL4-associat... 199 3.2e-15 1
UNIPROTKB|Q5R4T8 - symbol:DCAF13 "DDB1- and CUL4-associat... 198 4.1e-15 1
UNIPROTKB|F1P9T8 - symbol:DCAF13 "Uncharacterized protein... 197 5.2e-15 1
UNIPROTKB|F1S1E1 - symbol:DCAF13 "Uncharacterized protein... 191 2.4e-14 1
TAIR|locus:2121328 - symbol:AT4G28450 "AT4G28450" species... 184 1.4e-13 1
POMBASE|SPBC1A4.07c - symbol:SPBC1A4.07c "U3 snoRNP-assoc... 169 5.6e-12 1
WB|WBGene00022742 - symbol:ZK430.7 species:6239 "Caenorha... 158 9.2e-11 1
GENEDB_PFALCIPARUM|PFD0455w - symbol:PFD0455w "ribosomal ... 140 9.4e-09 1
UNIPROTKB|Q9U0J4 - symbol:PFD0455w "40S ribosomal process... 140 9.4e-09 1
ASPGD|ASPL0000009210 - symbol:AN4226 species:162425 "Emer... 139 1.1e-08 1
SGD|S000003934 - symbol:SOF1 "Essential protein required ... 135 3.3e-08 1
DICTYBASE|DDB_G0276815 - symbol:DDB_G0276815 "WD repeat-c... 112 8.8e-06 1
CGD|CAL0005164 - symbol:SOF1 species:5476 "Candida albica... 110 1.4e-05 1
UNIPROTKB|Q5A7Q9 - symbol:SOF1 "Putative uncharacterized ... 110 1.4e-05 1
>FB|FBgn0036500 [details] [associations]
symbol:CG7275 species:7227 "Drosophila melanogaster"
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0006911 EMBL:AE014296 GO:GO:0022008
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GeneTree:ENSGT00390000005711
KO:K11806 OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158 EMBL:AY058590
RefSeq:NP_648767.1 UniGene:Dm.4153 SMR:Q9VUN7 STRING:Q9VUN7
EnsemblMetazoa:FBtr0075547 GeneID:39669 KEGG:dme:Dmel_CG7275
UCSC:CG7275-RA FlyBase:FBgn0036500 InParanoid:Q9VUN7
OrthoDB:EOG49S4NW GenomeRNAi:39669 NextBio:814787 Uniprot:Q9VUN7
Length = 446
Score = 218 (81.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++R +Y E+LKQKYA HPQI+RIARHRQVPRH+ NAQ + R ++ K++ KE+N
Sbjct: 361 GVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHVLNAQKKMRTVKEKEQVKEAN 420
Query: 76 KRTHSAPGT-VPQTKERQRAVVKE 98
R H+ VP E+++ V+KE
Sbjct: 421 VRKHTKKSKKVPYVSEKKKHVLKE 444
>RGD|1308458 [details] [associations]
symbol:Dcaf13 "DDB1 and CUL4 associated factor 13" species:10116
"Rattus norvegicus" [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=IEA;ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1308458 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0080008 CTD:25879
GeneTree:ENSGT00390000005711 KO:K11806 InterPro:IPR007287
Pfam:PF04158 IPI:IPI00393552 RefSeq:NP_001167029.1 UniGene:Rn.41457
ProteinModelPortal:F1M7P1 Ensembl:ENSRNOT00000005803 GeneID:362902
KEGG:rno:362902 UCSC:RGD:1308458 NextBio:681728 ArrayExpress:F1M7P1
Uniprot:F1M7P1
Length = 445
Score = 213 (80.0 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 36/81 (44%), Positives = 58/81 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + +++R A DY++ LK+K+ +HP ++RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSRERAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+R HS PG+VP ER++ VV
Sbjct: 421 RRKHSKPGSVPVVSERKKHVV 441
>UNIPROTKB|Q5ZLK1 [details] [associations]
symbol:DCAF13 "DDB1- and CUL4-associated factor 13"
species:9031 "Gallus gallus" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 UniPathway:UPA00143 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
GO:GO:0016567 GO:GO:0030529 GO:GO:0006364 GO:GO:0080008
EMBL:AJ719733 IPI:IPI00588762 RefSeq:NP_001026119.1
UniGene:Gga.15424 ProteinModelPortal:Q5ZLK1 STRING:Q5ZLK1
Ensembl:ENSGALT00000025898 GeneID:420263 KEGG:gga:420263 CTD:25879
GeneTree:ENSGT00390000005711 HOGENOM:HOG000210082
HOVERGEN:HBG056998 InParanoid:Q5ZLK1 KO:K11806 OMA:CASDRSI
OrthoDB:EOG4T4CVF NextBio:20823203 InterPro:IPR007287 Pfam:PF04158
Uniprot:Q5ZLK1
Length = 445
Score = 210 (79.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 36/81 (44%), Positives = 58/81 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + +++ A++Y++ LK+K+ HHPQI+RIARHR +P+ IY E R +R ++RKE N
Sbjct: 361 GVLAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+R HS PG+VP E+++ +V
Sbjct: 421 RRKHSKPGSVPVVSEKKKHIV 441
>MGI|MGI:2684929 [details] [associations]
symbol:Dcaf13 "DDB1 and CUL4 associated factor 13"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
UniPathway:UPA00143 MGI:MGI:2684929 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0016567 GO:GO:0030529
GO:GO:0006364 GO:GO:0080008 EMBL:AC164883 CTD:25879
GeneTree:ENSGT00390000005711 HOGENOM:HOG000210082
HOVERGEN:HBG056998 KO:K11806 OMA:CASDRSI OrthoDB:EOG4T4CVF
InterPro:IPR007287 Pfam:PF04158 EMBL:AC165352 EMBL:BC060375
IPI:IPI00129701 RefSeq:NP_941008.2 UniGene:Mm.321937
ProteinModelPortal:Q6PAC3 SMR:Q6PAC3 STRING:Q6PAC3
PhosphoSite:Q6PAC3 PaxDb:Q6PAC3 PRIDE:Q6PAC3
Ensembl:ENSMUST00000022909 GeneID:223499 KEGG:mmu:223499
UCSC:uc007voc.2 InParanoid:Q6PAC3 NextBio:376735 Bgee:Q6PAC3
CleanEx:MM_WDSOF1 Genevestigator:Q6PAC3 Uniprot:Q6PAC3
Length = 445
Score = 209 (78.6 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ +HP ++RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+R HS PG+VP ER++ VV
Sbjct: 421 RRKHSKPGSVPIVSERKKHVV 441
>UNIPROTKB|Q7ZYQ6 [details] [associations]
symbol:dcaf13 "DDB1- and CUL4-associated factor 13"
species:8355 "Xenopus laevis" [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 UniPathway:UPA00143 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0030529 GO:GO:0006364 GO:GO:0080008 CTD:25879
HOVERGEN:HBG056998 KO:K11806 InterPro:IPR007287 Pfam:PF04158
EMBL:BC042261 RefSeq:NP_001080629.1 UniGene:Xl.21976
ProteinModelPortal:Q7ZYQ6 GeneID:380321 KEGG:xla:380321
Xenbase:XB-GENE-5791341 Uniprot:Q7ZYQ6
Length = 445
Score = 208 (78.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 36/85 (42%), Positives = 61/85 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+ E + +R +++K+ N
Sbjct: 361 GVLSPRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
+R HS PG+VP E+++ V+ +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445
>UNIPROTKB|Q6NVS5 [details] [associations]
symbol:dcaf13 "DDB1- and CUL4-associated factor 13"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 UniPathway:UPA00143 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0016567 GO:GO:0030529
GO:GO:0006364 GO:GO:0080008 CTD:25879 HOGENOM:HOG000210082
HOVERGEN:HBG056998 KO:K11806 OrthoDB:EOG4T4CVF InterPro:IPR007287
Pfam:PF04158 EMBL:CR855579 EMBL:BC067929 RefSeq:NP_998858.1
UniGene:Str.7604 ProteinModelPortal:Q6NVS5 STRING:Q6NVS5
GeneID:407967 KEGG:xtr:407967 Xenbase:XB-GENE-5791289
InParanoid:Q6NVS5 Uniprot:Q6NVS5
Length = 445
Score = 207 (77.9 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 36/85 (42%), Positives = 61/85 (71%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+ E + +R +++K+ N
Sbjct: 361 GLLSPRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
+R HS PG+VP E+++ V+ +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445
>ZFIN|ZDB-GENE-040426-703 [details] [associations]
symbol:dcaf13 "ddb1 and cul4 associated factor 13"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 UniPathway:UPA00143
ZFIN:ZDB-GENE-040426-703 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
GO:GO:0016567 GO:GO:0030529 GO:GO:0006364 GO:GO:0080008 CTD:25879
HOGENOM:HOG000210082 HOVERGEN:HBG056998 KO:K11806 OrthoDB:EOG4T4CVF
InterPro:IPR007287 Pfam:PF04158 EMBL:BC044155 IPI:IPI00618021
RefSeq:NP_956423.1 UniGene:Dr.79195 ProteinModelPortal:Q803X4
STRING:Q803X4 GeneID:393097 KEGG:dre:393097 InParanoid:Q803X4
NextBio:20814171 ArrayExpress:Q803X4 Uniprot:Q803X4
Length = 445
Score = 207 (77.9 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++ +++ A +Y++ L QK+ HHPQ+RRIARHR +PR + + E + ++ ++RKE N
Sbjct: 361 GVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQN 420
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
R HS PG+VP E+++ VVK +E
Sbjct: 421 VRKHSKPGSVPLLTEKEKHVVKVVE 445
>UNIPROTKB|Q9NV06 [details] [associations]
symbol:DCAF13 "DDB1- and CUL4-associated factor 13"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;IC] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 UniPathway:UPA00143 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
GO:GO:0016567 GO:GO:0030529 GO:GO:0006364 GO:GO:0080008 CTD:25879
HOGENOM:HOG000210082 HOVERGEN:HBG056998 KO:K11806 OrthoDB:EOG4T4CVF
InterPro:IPR007287 Pfam:PF04158 EMBL:AF161549 EMBL:AK001874
EMBL:AK027799 EMBL:AK074725 EMBL:BC026067 EMBL:BC101810
EMBL:BC112042 IPI:IPI00306642 IPI:IPI00747916 RefSeq:NP_056235.4
UniGene:Hs.532265 ProteinModelPortal:Q9NV06 SMR:Q9NV06
STRING:Q9NV06 PhosphoSite:Q9NV06 DMDM:160358731 PaxDb:Q9NV06
PeptideAtlas:Q9NV06 PRIDE:Q9NV06 Ensembl:ENST00000297579
GeneID:25879 KEGG:hsa:25879 UCSC:uc003ylm.1 GeneCards:GC08P104426
H-InvDB:HIX0201273 HGNC:HGNC:24535 neXtProt:NX_Q9NV06
PharmGKB:PA165585440 InParanoid:Q9NV06 ChiTaRS:DCAF13
GenomeRNAi:25879 NextBio:47292 ArrayExpress:Q9NV06 Bgee:Q9NV06
CleanEx:HS_WDSOF1 Genevestigator:Q9NV06 Uniprot:Q9NV06
Length = 445
Score = 199 (75.1 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+ HS PG+VP E+++ VV
Sbjct: 421 RIKHSKPGSVPLVSEKKKHVV 441
>UNIPROTKB|Q5R4T8 [details] [associations]
symbol:DCAF13 "DDB1- and CUL4-associated factor 13"
species:9601 "Pongo abelii" [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 UniPathway:UPA00143 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0030529 GO:GO:0006364 GO:GO:0080008 CTD:25879
HOVERGEN:HBG056998 KO:K11806 InterPro:IPR007287 Pfam:PF04158
EMBL:CR861153 RefSeq:NP_001126898.1 UniGene:Pab.18251
ProteinModelPortal:Q5R4T8 GeneID:100173913 KEGG:pon:100173913
InParanoid:Q5R4T8 Uniprot:Q5R4T8
Length = 445
Score = 198 (74.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+ HS PG+VP E+++ VV
Sbjct: 421 RIKHSKPGSVPIVSEKKKHVV 441
>UNIPROTKB|F1P9T8 [details] [associations]
symbol:DCAF13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0080008 CTD:25879
GeneTree:ENSGT00390000005711 KO:K11806 OMA:CASDRSI
InterPro:IPR007287 Pfam:PF04158 EMBL:AAEX03008708
RefSeq:XP_532299.2 Ensembl:ENSCAFT00000001031 GeneID:475065
KEGG:cfa:475065 Uniprot:F1P9T8
Length = 445
Score = 197 (74.4 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 37/85 (43%), Positives = 58/85 (68%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ HHP I+RIARHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHHPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420
Query: 76 KRTHSAPGTV---PQTKERQRAVVK 97
+ HS PG+V P+ K+ AVVK
Sbjct: 421 RLKHSKPGSVSIVPEKKKHIVAVVK 445
>UNIPROTKB|F1S1E1 [details] [associations]
symbol:DCAF13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0080008 GeneTree:ENSGT00390000005711
OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158 EMBL:CU469011
Ensembl:ENSSSCT00000006637 Uniprot:F1S1E1
Length = 445
Score = 191 (72.3 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 32/81 (39%), Positives = 56/81 (69%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ A DY++ LK+K+ HHP I+RI+RHR +P+ IY+ E R ++ ++RKE N
Sbjct: 361 GVLTSREKAATDYNQRLKEKFQHHPHIKRISRHRHLPKSIYSQIQEQRIMKEARRRKELN 420
Query: 76 KRTHSAPGTVPQTKERQRAVV 96
+ HS PG+V E+++ +V
Sbjct: 421 RIKHSKPGSVRIVSEKKKHIV 441
>TAIR|locus:2121328 [details] [associations]
symbol:AT4G28450 "AT4G28450" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
EMBL:CP002687 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0080008
KO:K11806 OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158 EMBL:AF372943
EMBL:AY045624 EMBL:AY143901 IPI:IPI00548928 RefSeq:NP_567810.5
UniGene:At.2008 ProteinModelPortal:Q93VK1 SMR:Q93VK1 STRING:Q93VK1
PRIDE:Q93VK1 EnsemblPlants:AT4G28450.1 GeneID:828962
KEGG:ath:AT4G28450 TAIR:At4g28450 InParanoid:Q93VK1
PhylomeDB:Q93VK1 ProtClustDB:CLSN2691268 Genevestigator:Q93VK1
Uniprot:Q93VK1
Length = 452
Score = 184 (69.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 31/85 (36%), Positives = 56/85 (65%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + ++++ +Y+E++K +Y H +++RI RHR +P+ IY A R + ++RKE+
Sbjct: 368 GVILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEAR 427
Query: 76 KRTHSAPGTVPQTKERQRAVVKEME 100
++ HSAPGTV R+R ++KE+E
Sbjct: 428 RKAHSAPGTVVTAPLRKRKIIKEVE 452
>POMBASE|SPBC1A4.07c [details] [associations]
symbol:SPBC1A4.07c "U3 snoRNP-associated protein Sof1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0030515 "snoRNA binding" evidence=ISO] [GO:0032040
"small-subunit processome" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 PomBase:SPBC1A4.07c GO:GO:0005737
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 EMBL:CU329671 GO:GO:0030515
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CU329671_GR GO:GO:0006364 GO:GO:0032040
HOGENOM:HOG000210082 KO:K11806 OMA:CASDRSI InterPro:IPR007287
Pfam:PF04158 PIR:T39855 RefSeq:NP_595809.1
ProteinModelPortal:O74340 STRING:O74340 EnsemblFungi:SPBC1A4.07c.1
GeneID:2540796 KEGG:spo:SPBC1A4.07c OrthoDB:EOG4GXJWG
NextBio:20801914 Uniprot:O74340
Length = 436
Score = 169 (64.5 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 19 NNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRT 78
+ ++ L Y +SL+++Y H P+IRRIARHR +P ++ A R + KR+E N R
Sbjct: 355 STREENRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRR 414
Query: 79 HSAPGTVPQTKERQRAVV 96
HS G VP KER+R VV
Sbjct: 415 HSKKGAVPYEKERERHVV 432
>WB|WBGene00022742 [details] [associations]
symbol:ZK430.7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040039 "inductive cell migration"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0040035 GO:GO:0040039
GO:GO:0007276 GeneTree:ENSGT00390000005711 HOGENOM:HOG000210082
KO:K11806 OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158 EMBL:FO080155
PIR:T27863 RefSeq:NP_494781.1 ProteinModelPortal:Q23494 SMR:Q23494
STRING:Q23494 PaxDb:Q23494 EnsemblMetazoa:ZK430.7.1
EnsemblMetazoa:ZK430.7.2 GeneID:173778 KEGG:cel:CELE_ZK430.7
UCSC:ZK430.7.1 CTD:173778 WormBase:ZK430.7 InParanoid:Q23494
NextBio:881057 Uniprot:Q23494
Length = 444
Score = 158 (60.7 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKE 73
G + +++QA Y+E L+ Y +HP++RRIA+HR VPRHI+ A EH+ IR + R++
Sbjct: 358 GPLTKREKQAFAYNEKLRDTYKNHPEVRRIAKHRNVPRHIFTAAKEHKLIRDARGRRD 415
>GENEDB_PFALCIPARUM|PFD0455w [details] [associations]
symbol:PFD0455w "ribosomal processing protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0000154
"rRNA modification" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 EMBL:AL844503
HOGENOM:HOG000210082 KO:K11806 OMA:CASDRSI InterPro:IPR007287
Pfam:PF04158 GO:GO:0000154 GO:GO:0005732 RefSeq:XP_001351406.1
ProteinModelPortal:Q9U0J4 EnsemblProtists:PFD0455w:mRNA
GeneID:812403 KEGG:pfa:PFD0455w EuPathDB:PlasmoDB:PF3D7_0409200
ProtClustDB:CLSZ2433499 Uniprot:Q9U0J4
Length = 482
Score = 140 (54.3 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 10 LSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQ 69
+S G ++NK++QA++Y LK+K+A +I+RI +H VP I + + + + +
Sbjct: 393 ISHEPSGILSNKEKQAINYRNKLKEKFASLKEIKRIRQHHHVPALIKSLSDKKKVMLEAK 452
Query: 70 KRKESNKRTHSA-PGTVPQTKERQRAVVKE 98
KRKE NK HS P +P E+++ V E
Sbjct: 453 KRKEKNKIQHSKNPEQLP-IPEKKKIFVTE 481
>UNIPROTKB|Q9U0J4 [details] [associations]
symbol:PFD0455w "40S ribosomal processing protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 EMBL:AL844503
HOGENOM:HOG000210082 KO:K11806 OMA:CASDRSI InterPro:IPR007287
Pfam:PF04158 GO:GO:0000154 GO:GO:0005732 RefSeq:XP_001351406.1
ProteinModelPortal:Q9U0J4 EnsemblProtists:PFD0455w:mRNA
GeneID:812403 KEGG:pfa:PFD0455w EuPathDB:PlasmoDB:PF3D7_0409200
ProtClustDB:CLSZ2433499 Uniprot:Q9U0J4
Length = 482
Score = 140 (54.3 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 10 LSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQ 69
+S G ++NK++QA++Y LK+K+A +I+RI +H VP I + + + + +
Sbjct: 393 ISHEPSGILSNKEKQAINYRNKLKEKFASLKEIKRIRQHHHVPALIKSLSDKKKVMLEAK 452
Query: 70 KRKESNKRTHSA-PGTVPQTKERQRAVVKE 98
KRKE NK HS P +P E+++ V E
Sbjct: 453 KRKEKNKIQHSKNPEQLP-IPEKKKIFVTE 481
>ASPGD|ASPL0000009210 [details] [associations]
symbol:AN4226 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0003676 EMBL:BN001302 GO:GO:0030529
OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158
ProteinModelPortal:C8V4A4 EnsemblFungi:CADANIAT00004434
Uniprot:C8V4A4
Length = 447
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G + +QR L+Y ++L Q+YAH P+I+RI R R VPR I A+ + KR+E N
Sbjct: 362 GIKSARQRTKLEYDQALVQRYAHMPEIKRIKRQRHVPRTIKKAREIKNEELAAIKRREEN 421
Query: 76 KRTHSAPGTV-PQTKERQRAVVKE 98
R H+ T+ + ER++ ++ +
Sbjct: 422 IRKHAKKSTLRARQSEREKMILAQ 445
>SGD|S000003934 [details] [associations]
symbol:SOF1 "Essential protein required for biogenesis of the
40S ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0032040
"small-subunit processome" evidence=IDA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
SGD:S000003934 GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:BK006945 GO:GO:0030686 EMBL:X91488 GO:GO:0032040
GeneTree:ENSGT00390000005711 HOGENOM:HOG000210082 KO:K11806
OMA:CASDRSI InterPro:IPR007287 Pfam:PF04158 OrthoDB:EOG4GXJWG
EMBL:X70052 EMBL:Z73116 PIR:S35323 RefSeq:NP_013090.1
ProteinModelPortal:P33750 SMR:P33750 DIP:DIP-746N IntAct:P33750
MINT:MINT-635582 STRING:P33750 PaxDb:P33750 PeptideAtlas:P33750
EnsemblFungi:YLL011W GeneID:850649 KEGG:sce:YLL011W CYGD:YLL011w
NextBio:966596 Genevestigator:P33750 GermOnline:YLL011W
GO:GO:0000462 Uniprot:P33750
Length = 489
Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 21 KQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHS 80
+++ L+Y E LK+++ H P+I+RI+RHR VP+ I AQ S KR+E+N+R
Sbjct: 389 REKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANERRTR 448
Query: 81 APGTVPQTKERQRAVV 96
+P ER++ +V
Sbjct: 449 KD--MPYISERKKQIV 462
>DICTYBASE|DDB_G0276815 [details] [associations]
symbol:DDB_G0276815 "WD repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
UniPathway:UPA00143 dictyBase:DDB_G0276815 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CM000151_GR GO:GO:0016567 GO:GO:0030529
EMBL:AAFI02000019 GO:GO:0006364 GO:GO:0080008 KO:K11806 OMA:CASDRSI
InterPro:IPR007287 Pfam:PF04158 RefSeq:XP_642903.1
ProteinModelPortal:Q7KWL3 STRING:Q7KWL3 EnsemblProtists:DDB0168265
GeneID:8620769 KEGG:ddi:DDB_G0276815 Uniprot:Q7KWL3
Length = 445
Score = 112 (44.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
G ++N++++ L+Y + +K+K+ P+++ IA HR+VP+ +Y + I ++R+ N
Sbjct: 362 GILSNREKEKLEYQDKIKEKFKEIPELKTIATHRRVPQLVYKRRFIKNEIHKAKQRRVKN 421
Query: 76 KRTHSAPGTVPQTKE 90
+S G P+ ++
Sbjct: 422 ISNNS--GKSPKVEK 434
>CGD|CAL0005164 [details] [associations]
symbol:SOF1 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0030686 "90S preribosome"
evidence=IEA] [GO:0032040 "small-subunit processome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
CGD:CAL0005164 Gene3D:2.130.10.10 SUPFAM:SSF50978 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 HOGENOM:HOG000210082 KO:K11806
InterPro:IPR007287 Pfam:PF04158 EMBL:AACQ01000051 EMBL:AACQ01000050
RefSeq:XP_717685.1 RefSeq:XP_717779.1 ProteinModelPortal:Q5A7Q9
STRING:Q5A7Q9 GeneID:3640585 GeneID:3640619 KEGG:cal:CaO19.12862
KEGG:cal:CaO19.5407 Uniprot:Q5A7Q9
Length = 436
Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 19 NNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSK 68
+++QR L+Y + LK++Y + P+I RIARHR +P+ + AQ R K
Sbjct: 387 SSRQRAKLEYQDKLKERYKYMPEINRIARHRHLPKPVKKAQDMKRLYSKK 436
>UNIPROTKB|Q5A7Q9 [details] [associations]
symbol:SOF1 "Putative uncharacterized protein SOF1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 CGD:CAL0005164 Gene3D:2.130.10.10
SUPFAM:SSF50978 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
HOGENOM:HOG000210082 KO:K11806 InterPro:IPR007287 Pfam:PF04158
EMBL:AACQ01000051 EMBL:AACQ01000050 RefSeq:XP_717685.1
RefSeq:XP_717779.1 ProteinModelPortal:Q5A7Q9 STRING:Q5A7Q9
GeneID:3640585 GeneID:3640619 KEGG:cal:CaO19.12862
KEGG:cal:CaO19.5407 Uniprot:Q5A7Q9
Length = 436
Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 19 NNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSK 68
+++QR L+Y + LK++Y + P+I RIARHR +P+ + AQ R K
Sbjct: 387 SSRQRAKLEYQDKLKERYKYMPEINRIARHRHLPKPVKKAQDMKRLYSKK 436
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.127 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 100 100 0.00091 102 3 11 22 0.39 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 533 (57 KB)
Total size of DFA: 108 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.48u 0.09s 14.57t Elapsed: 00:00:12
Total cpu time: 14.49u 0.09s 14.58t Elapsed: 00:00:12
Start: Thu Aug 15 11:53:39 2013 End: Thu Aug 15 11:53:51 2013