RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5433
(100 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.049
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 68 KQ--KRKESNKRTHSAPGTVPQTKERQRAVVKEME 100
KQ K+ +++ + + A + P A+ ME
Sbjct: 19 KQALKKLQASLKLY-ADDSAPAL-----AIKATME 47
Score = 29.1 bits (64), Expect = 0.14
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 22 QRQALDYSE-SLKQKYAHHPQIRRIARHRQVPRHIYNAQAE 61
++QAL + SLK YA P A E
Sbjct: 18 EKQALKKLQASLK-LYA--DD--------SAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.32
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 25/60 (41%)
Query: 26 LDYSESLKQKYAHHPQIRRIARHRQVPR----------------------HIYNAQAEHR 63
L+ L+ +YA H R I H +P+ H+ N + R
Sbjct: 433 LELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 27.2 bits (61), Expect = 0.88
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 41 QIRRIARHRQVPRHIYNA 58
Q R + + P +Y
Sbjct: 188 QGRTLLKELGAPERLYLK 205
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 27.1 bits (61), Expect = 0.92
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 41 QIRRIARHRQVPRHIYNA 58
Q+ + ++ VP++I +
Sbjct: 173 QVFELGKYLDVPKNILDK 190
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 26.4 bits (59), Expect = 1.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 41 QIRRIARHRQVPRH 54
IR+I R+RQ P
Sbjct: 190 DIRKIERNRQPPDS 203
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 26.1 bits (58), Expect = 2.0
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 41 QIRRIARHRQVPRH 54
+ I R Q PR
Sbjct: 194 DFKNIDRFAQPPRD 207
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 26.2 bits (58), Expect = 2.0
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 41 QIRRIARHRQVPRHIYNA 58
++R +AR +
Sbjct: 200 RVRALARMLGADEPLVLK 217
>3sxy_A Transcriptional regulator, GNTR family; transcription factor,
metal-binding, structur genomics, PSI-2, protein
structure initiative; 1.65A {Thermotoga maritima} PDB:
3dbw_A 3fms_A*
Length = 218
Score = 25.7 bits (57), Expect = 2.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 43 RRIARHRQVPRHIYNAQAEHRAI 65
RI R + + EH+ +
Sbjct: 159 DRIDLVRHLNERYVVSNREHKEL 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 25.8 bits (57), Expect = 2.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 41 QIRRIARHRQVPRH 54
IR+I R+RQ P
Sbjct: 343 DIRKIERNRQPPDS 356
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia
coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A*
3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Length = 202
Score = 24.5 bits (54), Expect = 6.1
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 7/72 (9%)
Query: 21 KQRQALDYSESLKQKYAHHPQIRRIARH------RQVPRHIYNAQAEHRAIRSKQKRKES 74
+Q++ D + P IA+ H+ A A I
Sbjct: 7 RQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHL-KALARKGVIEIVSGASRG 65
Query: 75 NKRTHSAPGTVP 86
+ +P
Sbjct: 66 IRLLQEEEEGLP 77
>3sxm_A Transcriptional regulator, GNTR family; transcription factor,
metal-binding, structur genomics, PSI-2, protein
structure initiative; 1.55A {Thermotoga maritima} PDB:
3sxk_A 3sxz_A
Length = 140
Score = 24.3 bits (53), Expect = 7.6
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 43 RRIARHRQVPRHIYNAQAEHRAI 65
RI R + + EH+ +
Sbjct: 84 DRIDLVRHLNERYVVSNREHKEL 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.127 0.370
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,484,378
Number of extensions: 72404
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 25
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)