RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5433
         (100 letters)



>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 26.9 bits (59), Expect = 0.35
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 1  MFWSPVGPELSFRVKGYVNNK 21
          MFWS +GP++ +   G V++ 
Sbjct: 4  MFWSDLGPDVGYEAIGLVDSS 24


>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
           {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 3/18 (16%), Positives = 8/18 (44%)

Query: 40  PQIRRIARHRQVPRHIYN 57
            ++R+I     +P  +  
Sbjct: 175 DEVRKIGLELGLPYDMLY 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,933
Number of extensions: 13509
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 11
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)