BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5435
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 36 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 95
Query: 81 MAFKTREN 88
+AFK +N
Sbjct: 96 LAFKGTKN 103
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With
Stigmatellin A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 81 MAFKTREN 88
+AFK +N
Sbjct: 62 LAFKGTKN 69
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 81 MAFKTREN 88
+AFK +N
Sbjct: 62 LAFKGTKN 69
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ N+P T VT++DNGLRVA+E+S PT TVG+W+ AGSRYE + NNG +F+EH
Sbjct: 2 ATYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEH 61
Query: 81 MAFK-TRENGFYFYYFSNASKGLGYAQYLPREQ 112
+AFK T++ + S G + Y REQ
Sbjct: 62 LAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQ 94
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 49/60 (81%)
Query: 29 NVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+VP TQV+ +DNG+RVA+E S PT TVG+W+DAGSRYE++ NNG +FLEH+AFK +N
Sbjct: 10 SVPETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKN 69
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 88 NGFYFYYFSNASKG---LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITT 143
NG + S +G LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+
Sbjct: 291 NGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTS 350
Query: 144 GAEDDLKKVTQSAYAQVAHFGMNEKVG 170
GA +D+++ T+ A V GM+E++G
Sbjct: 351 GAANDIERATEIARNMVCQLGMSEELG 377
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 88 NGFYFYYFSNASKG---LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITT 143
NG + S +G LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+
Sbjct: 291 NGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTS 350
Query: 144 GAEDDLKKVTQSAYAQVAHFGMNEKVG 170
GA +D+++ T+ A V GM+E++G
Sbjct: 351 GAANDIERATEIARNMVCQLGMSEELG 377
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 101 GLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAY 157
LG Q LP E +++Y K+ L +++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY
Sbjct: 50 ALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAY 109
Query: 158 AQVAHFGMNEKVG 170
V+ +GM++KVG
Sbjct: 110 RMVSMWGMSDKVG 122
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 30 VPSTQVTSIDNGLRVATE-DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+P T+ + + NGL +ATE +ATVGI+VDAGSR E NNG AHFLEH+AFK +N
Sbjct: 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
Length = 443
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 30 VPSTQVTSIDNGLRVATE-DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+P T+ + + NGL +ATE +ATVGI+VDAGSR E NNG AHFL+H+AFK +N
Sbjct: 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 75 AHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYL--YSKEQLLDRMCMTLGGRV 132
AHFLEH +G + + LG+ +PR + + +S+++LLD++ + L GR
Sbjct: 301 AHFLEHA------DGVHKVTIVPRGRALGF--MMPRREDMLHWSRKRLLDQIAVALAGRA 352
Query: 133 SEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
+EEI F +TTGAE+D ++ T+ A + +GM+ + G
Sbjct: 353 AEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFG 390
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 75 AHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYL--YSKEQLLDRMCMTLGGRV 132
AHFLEH +G + + LG+ +PR + + +S+++LLD++ + L GR
Sbjct: 310 AHFLEHA------DGVHKVTIVPRGRALGF--MMPRREDMLHWSRKRLLDQIAVALAGRA 361
Query: 133 SEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
+EEI F +TTGAE+D ++ T+ A + +GM+ + G
Sbjct: 362 AEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFG 399
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo
Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo
Peptidase
Length = 421
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 37 SIDNGLRVATED-SGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
++DNG+R+ TE S + ++GIWV GSRYE+ NG++HFLEHM FK
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK 54
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY 93
++T + NGL +A+ ++ +P + +G+++ AGSRYET AN G AH L +A G +
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLL-RLASPLTTKGASSF 85
Query: 94 YFSNASKGLG--YAQYLPREQYLYSKEQLLDRM 124
+ + +G + Y RE+ Y E L D +
Sbjct: 86 RITRGIEAVGGSLSVYSTREKMTYCVECLRDHV 118
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Cytochrome C Oxidase Iv Signal
Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q
Mutant Complexed With Malate Dehydrogenase Signal
Peptide
Length = 475
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+++S+ NGL+VAT ++ + +G+++DAGSR+E G H L+ +AFK+ E+
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEH 61
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase
Subunit From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase
Subunit From Sphingomonas Sp. A1
Length = 445
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 32 STQVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b
Peptidase From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b
Peptidase From Sphingomonas Sp. A1
Length = 437
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 32 STQVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFL 78
++T + NGL +A+ ++ +P +T+G+++ AGSRYE +N G +H L
Sbjct: 8 EITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL 52
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFL 78
++T + NGL +A+ ++ +P +T+G+++ AGSRYE +N G +H L
Sbjct: 8 EITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL 52
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With
Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With
Myxothiazol
Length = 453
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 4 FSYFEDILILKRCRATQASVAEKSVNVPS----TQVTSIDNGLRVATEDSGAPTATVGIW 59
S F + + + +AT+A VP + T + NGL +A+ ++ AP + +G++
Sbjct: 10 LSRFYSLKVAPKVKATEAPAG-----VPPHPQDLEFTRLPNGLVIASLENYAPASRIGLF 64
Query: 60 VDAGSRYETDANNGVAHFL 78
+ AGSRYE N G +H L
Sbjct: 65 IKAGSRYENSNNLGTSHLL 83
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 36 TSIDNGLRVATED-SGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+ NGLRV E GA + +G +V G+R ET +GV+HFLEH FK E+
Sbjct: 5 AELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGPED 58
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With
Stigmatellin A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 18 ATQASVAEKSVNVPS----TQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNG 73
A + E VP + T + NGL +A+ ++ AP + +G+++ AGSRYE N G
Sbjct: 5 APKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLG 64
Query: 74 VAHFL 78
+H L
Sbjct: 65 TSHLL 69
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 36 TSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFL 78
T + NGL +A+ ++ AP + +G+++ AGSRYE N G +H L
Sbjct: 11 TRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL 53
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY 93
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++ F ++EN
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSAVA- 59
Query: 94 YFSNASKGLGYAQYLPRE 111
A +GL + + R+
Sbjct: 60 ----AKEGLALSSNISRD 73
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 34 QVTSIDNGLRVATE-DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYF 92
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++ F ++EN
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSAVA 60
Query: 93 YYFSNASKGLGYAQYLPRE 111
A +GL + + R+
Sbjct: 61 -----AKEGLALSSNISRD 74
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 QVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAF 83
Q +DNG+ V D A + + V GS + +A G+AH+LEHM+
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSL 72
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 42 LRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKT 85
L V+ D+ +T+ + V GSRY T +GVAH L F+
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQN 42
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 113 YLYSKEQLLDRMCMTLGG-RVSEEIFFGRITTG 144
+LY KE++L+ M GG + E+FF TTG
Sbjct: 240 FLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTG 272
>pdb|1UOZ|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Thiocellopentaose At 1.1
Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 18 ATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVG 57
A+ A VA ++ N P+ ++TS+ N + D P ATVG
Sbjct: 36 ASAAMVAARNANPPNAELTSVANTPQSYWLDQAFPPATVG 75
>pdb|1UP3|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With
Methyl-Cellobiosyl-4-Deoxy-4-Thio-Beta-D-Cellobioside
At 1.6 Angstrom
Length = 294
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 18 ATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVG 57
A+ A VA ++ N P+ ++TS+ N + D P ATVG
Sbjct: 15 ASAAMVAARNANPPNAELTSVANTPQSYWLDQAFPPATVG 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,953,237
Number of Sequences: 62578
Number of extensions: 279037
Number of successful extensions: 808
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 36
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)