BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5435
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KJI7|AFG32_BOVIN AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1
Length = 805
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 70/72 (97%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
KGLGYAQYLPREQYLY++EQLLDRMCMTLGGRVSEEIFFGRITTGA+DDL+KVTQSAYAQ
Sbjct: 602 KGLGYAQYLPREQYLYTREQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQ 661
Query: 160 VAHFGMNEKVGK 171
+ FGMNEKVG+
Sbjct: 662 IVQFGMNEKVGQ 673
>sp|Q8JZQ2|AFG32_MOUSE AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1
Length = 802
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 70/72 (97%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
KGLGYAQYLP+EQYLY+KEQLLDRMCMTLGGRVSEEIFFGRITTGA+DDL+KVTQSAYAQ
Sbjct: 600 KGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQ 659
Query: 160 VAHFGMNEKVGK 171
+ FGMNEKVG+
Sbjct: 660 IVQFGMNEKVGQ 671
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2
Length = 797
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 70/72 (97%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
KGLGYAQYLP+EQYLY+KEQLLDRMCMTLGGRVSEEIFFGRITTGA+DDL+KVTQSAYAQ
Sbjct: 601 KGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQ 660
Query: 160 VAHFGMNEKVGK 171
+ FGMNEKVG+
Sbjct: 661 IVQFGMNEKVGQ 672
>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2
Length = 789
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 73/87 (83%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
KGLGYAQYLPREQ+LY++EQL DRMCM LGGRV+E++FFG+ITTGA+DDL+KVTQSAYAQ
Sbjct: 593 KGLGYAQYLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQ 652
Query: 160 VAHFGMNEKVGKSESKLVDHREVLVQQ 186
+ FGM+EK+G+ E +V++
Sbjct: 653 IVQFGMSEKLGQVSFDFPRQGETMVEK 679
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 60/70 (85%)
Query: 101 GLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGYAQYLP E+YLY+KE LLDRM M +GGRV+EE+ FGRI+TGA++DL+++T+ AYA V
Sbjct: 503 ALGYAQYLPEERYLYTKEALLDRMTMAIGGRVAEELVFGRISTGAQNDLERITRMAYAMV 562
Query: 161 AHFGMNEKVG 170
+GM+E+VG
Sbjct: 563 VDYGMSERVG 572
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus
GN=PMPCB PE=2 SV=1
Length = 490
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)
Query: 14 KRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNG 73
R R+TQA+ A+ +NVP T+VT ++NGLRVA+EDSG T TVG+W+DAGSRYE + NNG
Sbjct: 41 NRLRSTQAA-AQVVLNVPETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNG 99
Query: 74 VAHFLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
AHFLEHMAFK T++ + G Y REQ +Y
Sbjct: 100 TAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVY 142
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus
GN=Pmpcb PE=2 SV=1
Length = 489
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 15 RCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGV 74
R R+TQA+ + +NVP TQVT ++NGLRVA+E+SG T TVG+W+DAGSRYE + NNG
Sbjct: 41 RLRSTQAA-PQVVLNVPETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGT 99
Query: 75 AHFLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
AHFLEHMAFK T++ + G Y REQ +Y
Sbjct: 100 AHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVY 141
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus
norvegicus GN=Pmpcb PE=1 SV=3
Length = 489
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 15 RCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGV 74
R R+TQA+ + +NVP TQVT ++NGLRVA+E+SG T TVG+W+DAGSRYE + NNG
Sbjct: 41 RLRSTQAA-PQVVLNVPETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGT 99
Query: 75 AHFLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
AHFLEHMAFK T++ + G Y REQ +Y
Sbjct: 100 AHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVY 141
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii
GN=PMPCB PE=2 SV=1
Length = 489
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
Query: 5 SYFEDILILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGS 64
SYF + R R+TQA+ + +NVP T+VT +++GLRVA+EDSG T TVG+W+DAGS
Sbjct: 35 SYFGE----NRLRSTQAAT-QVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGS 89
Query: 65 RYETDANNGVAHFLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
RYE + NNG AHFLEHMAFK T++ + G Y REQ +Y
Sbjct: 90 RYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVY 141
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens
GN=PMPCB PE=1 SV=2
Length = 489
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 14 KRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNG 73
R R+TQA+ + +NVP T+VT +++GLRVA+EDSG T TVG+W+DAGSRYE + NNG
Sbjct: 40 NRLRSTQAAT-QVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNG 98
Query: 74 VAHFLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
AHFLEHMAFK T++ + G Y REQ +Y
Sbjct: 99 TAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVY 141
>sp|D5H7Z5|FTSH1_SALRM ATP-dependent zinc metalloprotease FtsH 1 OS=Salinibacter ruber
(strain M8) GN=ftsH1 PE=3 SV=1
Length = 686
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 59/70 (84%)
Query: 102 LGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161
LG+AQ+LP+E+ LYS+E L+DRM M LGGR +EEI FGR TTGA+DDL++VT++AYA V
Sbjct: 509 LGHAQHLPKERDLYSREALMDRMTMALGGRGAEEIVFGRATTGAKDDLERVTETAYAMVV 568
Query: 162 HFGMNEKVGK 171
+GM++++G
Sbjct: 569 DYGMSDRIGP 578
>sp|Q7TT47|SPG7_RAT Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1
Length = 744
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 96 SNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQS 155
+NA+ LG++Q LPR+QYL++KEQL +RMCM LGGR +E I F R+T+GA+DDL+KVT+
Sbjct: 563 TNAA--LGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRI 620
Query: 156 AYAQVAHFGMNEKVGK 171
AY+ V FGM +G
Sbjct: 621 AYSMVKQFGMAPSIGP 636
>sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1
Length = 781
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 96 SNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQS 155
+NA+ LG++Q LPR+QYL++KEQL +RMCM LGGR +E I F R+T+GA+DDL+KVT+
Sbjct: 600 TNAA--LGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRI 657
Query: 156 AYAQVAHFGMNEKVGK 171
AY+ V FGM +G
Sbjct: 658 AYSMVKQFGMAPSIGP 673
>sp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH8 PE=3 SV=1
Length = 822
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 77 FLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEI 136
FLEH E + LG+AQY+P E L +KEQL D CMTLGGR +EE+
Sbjct: 610 FLEHA-----EPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEEV 664
Query: 137 FFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
GRI+TGA++DL+KVT+ YAQVA +G +EKVG
Sbjct: 665 LIGRISTGAQNDLEKVTKMTYAQVAVYGFSEKVG 698
>sp|Q8S2A7|FTSH3_ORYSJ ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH3 PE=3 SV=1
Length = 802
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 77 FLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEI 136
FLEH E + LG+AQY+P + L +KEQL D CMTLGGR +EE+
Sbjct: 595 FLEHA-----EPLLKVTIVPRGTAALGFAQYVPNDNLLMTKEQLFDMTCMTLGGRAAEEV 649
Query: 137 FFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
G+I+TGA++DL+KVT+ YAQVA +G +EKVG
Sbjct: 650 LIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVG 683
>sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2
Length = 795
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 96 SNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQS 155
+NA+ LG+AQ LPR+Q+L++KEQL +RMCM LGGR SE + F +T+GA+DDL+KVT+
Sbjct: 600 TNAA--LGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRI 657
Query: 156 AYAQVAHFGMNEKVG 170
AY+ V FGM +G
Sbjct: 658 AYSMVKQFGMAPGIG 672
>sp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1
Length = 813
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 77 FLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEI 136
FLEH E + LG+AQY+P E L +KEQL D CMTLGGR +E++
Sbjct: 602 FLEHA-----EPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQV 656
Query: 137 FFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
GRI+TGA++DL+KVT+ YAQVA +G ++K+G
Sbjct: 657 LIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKIG 690
>sp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial
OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1
Length = 809
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 74 VAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVS 133
V FLEH E + LG+AQY+P E L +KEQL D CMTLGGR +
Sbjct: 593 VGWFLEHA-----EPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAA 647
Query: 134 EEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
E++ G+I+TGA++DL+KVT+ YAQVA +G ++KVG
Sbjct: 648 EQVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVG 684
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 50/70 (71%)
Query: 101 GLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGYAQYLP +QYL S+EQ RM M LGGRVSEE+ F +T+GA DD KKVTQ A A V
Sbjct: 587 ALGYAQYLPPDQYLISEEQFRHRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMV 646
Query: 161 AHFGMNEKVG 170
GM+ K+G
Sbjct: 647 TSLGMSPKIG 656
>sp|P31800|QCR1_BOVIN Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus
GN=UQCRC1 PE=1 SV=2
Length = 480
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 36 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 95
Query: 81 MAFKTREN 88
+AFK +N
Sbjct: 96 LAFKGTKN 103
>sp|Q68FY0|QCR1_RAT Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus
norvegicus GN=Uqcrc1 PE=1 SV=1
Length = 480
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 10 ILILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETD 69
+L L R T A+ + +VP TQV+ +DNGLRVA+E S PT TVG+W+D GSRYET+
Sbjct: 26 LLRLPALRGT-ATFVQALQSVPETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETE 84
Query: 70 ANNGVAHFLEHMAFKTREN 88
NNG +FLEH+AFK +N
Sbjct: 85 KNNGAGYFLEHLAFKGTKN 103
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 3/87 (3%)
Query: 99 SKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFG--RITTGAEDDLKKVTQSA 156
++ LGYA YLP++QYL S+ Q+LD+M M L GRVSEEIFFG +IT+GA DD +KVT+ A
Sbjct: 587 AQALGYASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMA 646
Query: 157 YAQVAHFGMNEKVGKSESKLVDHREVL 183
A V +GM+ VG + + +D RE +
Sbjct: 647 QAYVTQYGMSPTVG-TIAYPIDTRETV 672
>sp|Q9CZ13|QCR1_MOUSE Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus
GN=Uqcrc1 PE=1 SV=2
Length = 480
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 10 ILILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETD 69
+L L R T A+ A+ +VP TQV+ +DNGLRVA+E S T TVG+W+DAGSRYET+
Sbjct: 26 LLRLPALRGT-ATFAQALQSVPETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETE 84
Query: 70 ANNGVAHFLEHMAFKTREN 88
NNG +FLEH+AFK +N
Sbjct: 85 KNNGAGYFLEHLAFKGTKN 103
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 54/70 (77%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
K LG A YLP E+ + ++EQL D MC TLGGR +EE+ G+I+TGA +DL++VT+ AYA
Sbjct: 486 KALGAAWYLPEERQITTREQLQDEMCATLGGRAAEELVLGKISTGASNDLERVTKQAYAM 545
Query: 160 VAHFGMNEKV 169
V +FGM++K+
Sbjct: 546 VVYFGMSDKL 555
>sp|P31930|QCR1_HUMAN Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens
GN=UQCRC1 PE=1 SV=3
Length = 480
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 47/59 (79%)
Query: 30 VPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
VP TQV+ +DNGLRVA+E S PT TVG+W+D GSR+ET+ NNG +FLEH+AFK +N
Sbjct: 45 VPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKN 103
>sp|P40341|YTA12_YEAST Mitochondrial respiratory chain complexes assembly protein YTA12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YTA12 PE=1 SV=2
Length = 825
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 101 GLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGYAQYLP + +L +++QL DRM M+LGGRVSEE+ F +T+GA DD KKVT A A V
Sbjct: 642 ALGYAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMV 701
Query: 161 AHFGMNEKVG 170
GM++K+G
Sbjct: 702 TELGMSDKIG 711
>sp|Q00302|MPPB_BLAEM Mitochondrial-processing peptidase subunit beta OS=Blastocladiella
emersonii GN=MPP1 PE=3 SV=1
Length = 465
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 18 ATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGA-PTATVGIWVDAGSRYETDANNGVAH 76
A+ +S +NVP TQVT + NGL VATE + A TATVG+W+D+GSR ET ANNGVAH
Sbjct: 20 ASSSSYPGALLNVPKTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAH 79
Query: 77 FLEHMAFK-TRENGFYFYYFSNASKGLGYAQYLPREQYLY 115
FLEH++FK T++ + G Y REQ +Y
Sbjct: 80 FLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVY 119
>sp|Q4W6B5|MPPB_DICDI Mitochondrial-processing peptidase subunit beta OS=Dictyostelium
discoideum GN=mppB PE=1 SV=1
Length = 469
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 11 LILKRCRATQASVAEKSVNV------PSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGS 64
L +K + S + K+V+ P T++T++ NG+RVATE + A+VG+WVD+GS
Sbjct: 7 LFVKSTKNFSRSFSRKTVDPSYLKISPETKITTLSNGIRVATEQTYGEVASVGVWVDSGS 66
Query: 65 RYETDANNGVAHFLEHMAFK 84
YETD NNGVAHFLEHM FK
Sbjct: 67 VYETDKNNGVAHFLEHMIFK 86
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta
OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2
Length = 531
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 28 VNVPSTQVTSIDNGLRVATEDS-GAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
++ P T+VT++ NGLRVATE + A TATVG+W+DAGSR+E+D NG AHFLEHM FK
Sbjct: 92 LSAPETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFK 149
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 74 VAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRV 132
V H L HM + + + +GY +LP E +Y SK ++LDRM M LGGR
Sbjct: 427 VGHMLPHM------DPLHKITIIPRGRAMGYTLFLPVEDRYNISKSEILDRMTMALGGRA 480
Query: 133 SEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVG 170
+EEI FG IT+GA+DD+++ TQ A V +GM+EK+G
Sbjct: 481 AEEITFGEITSGAQDDIERTTQWARRMVTEWGMSEKLG 518
>sp|D3F124|FTSH1_CONWI ATP-dependent zinc metalloprotease FtsH 1 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH1 PE=3 SV=1
Length = 653
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
Query: 74 VAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRV 132
V HFLEH + + + LGY +P+E ++L ++ L D M MTLGGR
Sbjct: 427 VGHFLEHA------DPVHKISVIGRGQALGYTISMPQEDKFLTTRAALGDTMAMTLGGRA 480
Query: 133 SEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGK 171
+EEI FG ITTGA +DL+KVT +A V FGM+EK+G
Sbjct: 481 AEEIIFGEITTGASNDLEKVTGTAKQMVMRFGMSEKLGP 519
>sp|P98080|UCR1_CAEEL Cytochrome b-c1 complex subunit 1, mitochondrial
OS=Caenorhabditis elegans GN=ucr-1 PE=3 SV=2
Length = 471
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 15 RCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGV 74
R ++ SV + + P +VT++ NG RV TED+G+ TATVG+W++ GSR+E + NNGV
Sbjct: 20 RNASSAVSVKDVLASAPQAEVTTLKNGFRVVTEDNGSATATVGVWIETGSRFENEKNNGV 79
Query: 75 AHFLEHMAFK 84
AHFLE + K
Sbjct: 80 AHFLERLIHK 89
>sp|Q9Y8B5|MPPB_LENED Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes
GN=mppB PE=3 SV=1
Length = 466
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 31 PSTQVTSIDNGLRVATEDSG-APTATVGIWVDAGSRYETDANNGVAHFLEHMAFK-TREN 88
P T+++++ NGL VATE A TATVG+W+DAGSR ETD NG AHFLEHMAFK T
Sbjct: 27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRR 86
Query: 89 GFYFYYFSNASKGLGYAQYLPREQYLY 115
+ + G Y REQ +Y
Sbjct: 87 SQHALELEVENIGAHLNAYTSREQTVY 113
>sp|Q3JMH0|FTSH_BURP1 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia
pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2
Length = 666
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY Q +P E +Y+ K +LLDR+ + LGGRV+EEI FG ++TGAE+DL++ T+ A V
Sbjct: 462 LGYTQQVPTEDRYVLRKSELLDRLDVLLGGRVAEEIVFGDVSTGAENDLERATEMARHMV 521
Query: 161 AHFGMNEKVG 170
A +GM+E++G
Sbjct: 522 ARYGMSERIG 531
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY Q LP E +YL ++ +LLDR+ + LGGRVSEEI FG ++TGA++DL++ T A + V
Sbjct: 479 LGYTQQLPTEDRYLMTRNELLDRLQVLLGGRVSEEIIFGDVSTGAQNDLQRATDIARSMV 538
Query: 161 AHFGMNEKVG 170
+GM+E++G
Sbjct: 539 MEYGMSERLG 548
>sp|Q6MJV1|FTSH2_BDEBA ATP-dependent zinc metalloprotease FtsH 2 OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=ftsH2 PE=3 SV=1
Length = 615
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY P E +YL ++ +LLD++C+ LGGRV+EE+ FG ++TGA DDL +VT A A V
Sbjct: 448 LGYTMQRPTEDRYLMTRPELLDKICVLLGGRVAEELIFGEVSTGASDDLVRVTNIAEALV 507
Query: 161 AHFGMNEKVG 170
+GM+E +G
Sbjct: 508 TRYGMSEVLG 517
>sp|P43264|QCR1_EUGGR Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial OS=Euglena gracilis PE=2 SV=1
Length = 494
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 31 PSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
P+ Q ++ NG R+A+E T TVG+W+DAGSR+ET+ NNGVAHFLEHM FK
Sbjct: 26 PTLQ-NALPNGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFK 78
>sp|B3DV46|FTSH1_METI4 ATP-dependent zinc metalloprotease FtsH 1 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH1 PE=3 SV=1
Length = 636
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 101 GLGYAQYLPREQ-YLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
LGY LP Q YL SK +LLDR+C+ +GGR +EE+ +G ITTGAE+DL+ T A
Sbjct: 471 ALGYTLQLPTAQKYLLSKSELLDRICVAMGGRAAEELIYGDITTGAENDLEVATTIARQM 530
Query: 160 VAHFGMNEKVG 170
V +GM EK G
Sbjct: 531 VCLYGMGEKSG 541
>sp|B1GZK7|FTSH_UNCTG ATP-dependent zinc metalloprotease FtsH OS=Uncultured termite group
1 bacterium phylotype Rs-D17 GN=ftsH PE=3 SV=1
Length = 631
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY LP E +YL SK +LLD++ + GGRV+EE+ F ITTGA++D+ K T A V
Sbjct: 447 LGYTLQLPEEDKYLTSKSELLDKLSILFGGRVAEELVFSEITTGAQNDISKATGIAMRMV 506
Query: 161 AHFGMNEKVG 170
FGM++K+G
Sbjct: 507 TEFGMSDKIG 516
>sp|P37476|FTSH_BACSU ATP-dependent zinc metalloprotease FtsH OS=Bacillus subtilis
(strain 168) GN=ftsH PE=1 SV=1
Length = 637
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 103 GYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161
GYA LPRE +Y +K +LLD++ LGGRV+EEI FG ++TGA +D ++ T A V
Sbjct: 453 GYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVT 512
Query: 162 HFGMNEKVG 170
FGM+EK+G
Sbjct: 513 EFGMSEKLG 521
>sp|C5CES8|FTSH_KOSOT ATP-dependent zinc metalloprotease FtsH OS=Kosmotoga olearia
(strain TBF 19.5.1) GN=ftsH PE=3 SV=1
Length = 645
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 95 FSNASKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVT 153
S LG+ + LP E +YL S+ ++LD + LGGR +EEI FG ITTGA +DL++ T
Sbjct: 449 IPRGSASLGFTESLPSEDRYLVSRSEMLDNLAQILGGRAAEEIVFGEITTGAANDLERAT 508
Query: 154 QSAYAQVAHFGMNEKVG 170
Q A V GM++++G
Sbjct: 509 QMARTMVCQLGMSDRLG 525
>sp|Q3B6R3|FTSH_PELLD ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon luteolum
(strain DSM 273) GN=ftsH PE=3 SV=1
Length = 706
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY +P E +YL +K +L R+C LGGR++EE FG I+TGA++DL+K+T AY V
Sbjct: 492 LGYTMNIPLEDRYLMTKRELFARICGLLGGRIAEESVFGEISTGAQNDLEKITGIAYNMV 551
Query: 161 AHFGMNEKVG 170
+GM++K+G
Sbjct: 552 MVYGMSDKIG 561
>sp|Q0TTK8|FTSH_CLOP1 ATP-dependent zinc metalloprotease FtsH OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=ftsH PE=3
SV=1
Length = 717
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 101 GLGYAQYLPREQ-YLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
LGY LP E+ YL SKE+++D++ + LGGR +EE+ F ITTGA +D+++ TQSA
Sbjct: 456 ALGYTMQLPEEEKYLVSKEEMIDQISVMLGGRAAEEVVFNSITTGASNDIERATQSARNM 515
Query: 160 VAHFGMNEK 168
+ +GM+E+
Sbjct: 516 ITIYGMSER 524
>sp|A9BJK3|FTSH3_PETMO ATP-dependent zinc metalloprotease FtsH 3 OS=Petrotoga mobilis
(strain DSM 10674 / SJ95) GN=ftsH3 PE=3 SV=1
Length = 645
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 101 GLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159
LGY LP E +YL +K ++LD + + L GR +EEI F IT+GAE+DLK+ T+ A
Sbjct: 453 ALGYTLQLPSEDRYLMNKSEILDDIAVMLAGRAAEEIIFDEITSGAENDLKRATEMARRM 512
Query: 160 VAHFGMNEKVG 170
V FGM+EK+G
Sbjct: 513 VESFGMSEKIG 523
>sp|B0K657|FTSH2_THEPX ATP-dependent zinc metalloprotease FtsH 2 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH2 PE=3 SV=1
Length = 510
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 100 KGLGYAQYLPREQ-YLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYA 158
+ LGY P+E +L +K +L +++ M LGGR SEEI F I+TGAE+DLK+ T+ AY
Sbjct: 369 EALGYVLNFPKEDAFLLTKTELKNKITMLLGGRASEEIIFNEISTGAENDLKEATKIAYQ 428
Query: 159 QVAHFGMNE 167
V ++GM+E
Sbjct: 429 MVCNYGMSE 437
>sp|Q9WZ49|FTSH_THEMA ATP-dependent zinc metalloprotease FtsH OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=ftsH PE=1 SV=1
Length = 610
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 100 KGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYA 158
K LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+GA +D+++ T+ A
Sbjct: 451 KALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARN 510
Query: 159 QVAHFGMNEKVG 170
V GM+E++G
Sbjct: 511 MVCQLGMSEELG 522
>sp|P11913|MPPB_NEUCR Mitochondrial-processing peptidase subunit beta OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=pep PE=1 SV=1
Length = 476
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 33 TQVTSIDNGLRVATEDSG-APTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
TQ T++ NGL VA++ S A T+TVG+W+DAGSR ETD NG AHFLEH+AFK
Sbjct: 40 TQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFK 92
>sp|O67077|FTSH_AQUAE ATP-dependent zinc metalloprotease FtsH OS=Aquifex aeolicus (strain
VF5) GN=ftsH PE=1 SV=1
Length = 634
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYA 158
LG Q LP E +++Y K+ L +++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY
Sbjct: 447 LGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYR 506
Query: 159 QVAHFGMNEKVG 170
V+ +GM++KVG
Sbjct: 507 MVSMWGMSDKVG 518
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial-processing peptidase subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=qcr1 PE=2 SV=1
Length = 457
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 30 VPSTQVTSIDNGLRVATEDSG-APTATVGIWVDAGSRYETDANNGVAHFLEHMAF---KT 85
+P T+ T++ NGL VATE A TATV + VDAGSR ET NNG AHFLEH+AF K
Sbjct: 19 LPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKN 78
Query: 86 RENGFYFYYFSNASKGLGYAQYLPREQYLY 115
R F N L Y REQ +Y
Sbjct: 79 RSQKALELEFENTGAHLN--AYTSREQTVY 106
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY Q P E +YL + +LLDR+ + LGGR++E++ FG ++TGA++DL++ T A +
Sbjct: 532 LGYTQQTPTEDRYLLKRSELLDRLDVLLGGRIAEQLIFGDVSTGAQNDLQRATDMARQMI 591
Query: 161 AHFGMNEKVG 170
FGM++++G
Sbjct: 592 TQFGMSDQLG 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,105,626
Number of Sequences: 539616
Number of extensions: 3539158
Number of successful extensions: 8284
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 7958
Number of HSP's gapped (non-prelim): 298
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)