Query psy5435
Match_columns 245
No_of_seqs 238 out of 2037
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:27:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734|consensus 99.9 3E-23 6.5E-28 190.5 9.1 140 60-214 556-698 (752)
2 PF01434 Peptidase_M41: Peptid 99.8 3.6E-22 7.8E-27 169.0 4.2 154 65-224 32-194 (213)
3 PRK10733 hflB ATP-dependent me 99.8 1.3E-21 2.7E-26 189.6 8.5 154 63-223 410-572 (644)
4 COG0465 HflB ATP-dependent Zn 99.8 6.4E-22 1.4E-26 186.8 5.9 152 55-214 400-554 (596)
5 CHL00176 ftsH cell division pr 99.8 2.9E-21 6.2E-26 186.0 8.9 153 64-223 441-602 (638)
6 KOG0731|consensus 99.8 1.6E-20 3.5E-25 180.5 8.6 151 53-214 561-712 (774)
7 COG0612 PqqL Predicted Zn-depe 99.8 1.3E-18 2.8E-23 161.7 12.0 182 27-240 11-203 (438)
8 TIGR02110 PQQ_syn_pqqF coenzym 99.8 9.9E-19 2.1E-23 169.6 8.0 124 35-162 2-128 (696)
9 KOG0960|consensus 99.7 5E-18 1.1E-22 151.0 8.5 132 27-162 28-160 (467)
10 PRK15101 protease3; Provisiona 99.7 1.4E-17 3E-22 168.2 9.4 128 31-162 42-172 (961)
11 TIGR01241 FtsH_fam ATP-depende 99.7 6.9E-17 1.5E-21 152.6 10.1 148 63-217 313-465 (495)
12 KOG2067|consensus 99.6 2.8E-15 6.1E-20 133.8 8.7 122 31-157 23-146 (472)
13 COG1025 Ptr Secreted/periplasm 99.3 1.1E-12 2.5E-17 128.3 6.4 107 27-134 18-127 (937)
14 KOG2583|consensus 99.3 1.7E-12 3.7E-17 116.1 4.3 97 32-129 22-120 (429)
15 KOG0959|consensus 99.2 1.6E-11 3.4E-16 121.9 7.3 119 32-154 27-148 (974)
16 PF00675 Peptidase_M16: Insuli 99.2 1.6E-11 3.4E-16 97.6 3.1 116 43-163 1-119 (149)
17 PTZ00432 falcilysin; Provision 99.1 7.4E-11 1.6E-15 120.9 6.1 102 31-137 90-198 (1119)
18 PRK15101 protease3; Provisiona 98.0 5.5E-06 1.2E-10 84.3 5.1 173 32-240 522-704 (961)
19 CHL00206 ycf2 Ycf2; Provisiona 97.5 6E-05 1.3E-09 79.8 3.6 70 63-139 1892-1967(2281)
20 COG1026 Predicted Zn-dependent 96.3 0.0018 3.9E-08 65.0 1.9 78 37-118 26-106 (978)
21 KOG0961|consensus 93.9 0.2 4.3E-06 49.0 7.3 86 29-118 14-104 (1022)
22 PF03410 Peptidase_M44: Protei 84.3 0.76 1.6E-05 43.3 2.5 46 37-83 3-48 (590)
23 PHA03081 putative metalloprote 69.3 3.9 8.4E-05 38.7 2.6 46 37-83 3-48 (595)
24 KOG2019|consensus 38.1 32 0.0007 34.4 3.2 50 37-90 58-107 (998)
25 PF08367 M16C_assoc: Peptidase 22.2 3.7E+02 0.008 22.8 6.9 122 31-161 69-204 (248)
26 PF08288 PIGA: PIGA (GPI ancho 21.7 53 0.0011 23.9 1.2 13 35-47 9-22 (90)
No 1
>KOG0734|consensus
Probab=99.89 E-value=3e-23 Score=190.53 Aligned_cols=140 Identities=29% Similarity=0.386 Sum_probs=123.6
Q ss_pred EecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHh
Q psy5435 60 VDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFF 138 (245)
Q Consensus 60 ~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~ 138 (245)
-+.=.+||+.||+.||.++...++ ++|.||+|||.++|.+.+.|+ |...+|+.+++.++++.||||+|||++|
T Consensus 556 ak~~TAyHE~GHAivA~yTk~A~P------lhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIf 629 (752)
T KOG0734|consen 556 AKKITAYHEGGHAIVALYTKGAMP------LHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIF 629 (752)
T ss_pred hhhhhhhhccCceEEEeecCCCcc------ccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhc
Confidence 455678999999999999999999 999999999999999999998 9999999999999999999999999999
Q ss_pred C--CCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhhhhhhHHHhhccchHHHHHHHHhcccc
Q psy5435 139 G--RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVLALEGLDVLGRSQDGVAQRSALECGGV 214 (245)
Q Consensus 139 ~--~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~ 214 (245)
| ++++|+++||++||++|+.||+.|||++.+|++.+....+. .+.+..+.+ .||.|+++++.++|++
T Consensus 630 G~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~-----~s~~~~t~~----lidaEi~~lL~~sYeR 698 (752)
T KOG0734|consen 630 GTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS-----SSLSPRTQE----LIDAEIKRLLRDSYER 698 (752)
T ss_pred cCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC-----CCCCchhHH----HHHHHHHHHHHHHHHH
Confidence 8 69999999999999999999999999999999877533221 122333333 4599999999999995
No 2
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.85 E-value=3.6e-22 Score=169.02 Aligned_cols=154 Identities=26% Similarity=0.398 Sum_probs=117.9
Q ss_pred ccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHhC--CC
Q psy5435 65 RYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFG--RI 141 (245)
Q Consensus 65 ~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~~--~~ 141 (245)
++|++||+.++|++++... +.+++|.||+..+|++.+.|. +....+++++.++++++|||++||+++|+ ++
T Consensus 32 A~HEAGhAvva~~l~~~~~------v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~ 105 (213)
T PF01434_consen 32 AYHEAGHAVVAYLLPPADP------VSKVSIVPRGSALGFTQFTPDEDRYIRTRSYLEDRICVLLAGRAAEELFFGEDNV 105 (213)
T ss_dssp HHHHHHHHHHHHHSSS---------EEEEESSTTCCCCHCCEECHHTT-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-
T ss_pred HHHHHHHHHHHHHhccccc------EEEEEEecCCCcceeEEeccchhcccccHHHHHhhHHHHHHHHHHHHhhcCccee
Confidence 5789999999999998777 899999999999999999987 45679999999999999999999999999 99
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhh-hh-hhhhHHHhhccchHHHHHHHHhcccc--chh
Q psy5435 142 TTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQ-VL-ALEGLDVLGRSQDGVAQRSALECGGV--KVI 217 (245)
Q Consensus 142 ~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~d~e~~~~~~~~~~~--~~~ 217 (245)
++|+++||++|+++|+.|+.+|||++.+|++.+....+.+.++.+ +. ....++++.+.+|.++++++++||++ .++
T Consensus 106 stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL 185 (213)
T PF01434_consen 106 STGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEIL 185 (213)
T ss_dssp BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887654443322211 10 11233445566799999999999984 555
Q ss_pred h--cccccc
Q psy5435 218 E--HDFLQV 224 (245)
Q Consensus 218 ~--~~~~~~ 224 (245)
+ ++.|++
T Consensus 186 ~~~r~~l~~ 194 (213)
T PF01434_consen 186 EENREALEA 194 (213)
T ss_dssp HHTHHHHHH
T ss_pred HHhHHHHHH
Confidence 3 445543
No 3
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.85 E-value=1.3e-21 Score=189.60 Aligned_cols=154 Identities=22% Similarity=0.317 Sum_probs=129.2
Q ss_pred ccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHhC--
Q psy5435 63 GSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFG-- 139 (245)
Q Consensus 63 Gs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~~-- 139 (245)
-.++|+.||+.+++++.+... +.+++|.|||.++|++.+.|. |.+.++++.+.++|+++||||+||+++||
T Consensus 410 ~~a~he~gha~~~~~~~~~~~------~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~ 483 (644)
T PRK10733 410 STAYHEAGHAIIGRLVPEHDP------VHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPE 483 (644)
T ss_pred HHHHHHHHHHHHHHHccCCCc------eeEEEEeccCCCcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCC
Confidence 457899999999999999888 899999999999999999997 67789999999999999999999999997
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhhh--hhhHHHhhccchHHHHHHHHhcccc--c
Q psy5435 140 RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVLA--LEGLDVLGRSQDGVAQRSALECGGV--K 215 (245)
Q Consensus 140 ~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~e~~~~~~~~~~~--~ 215 (245)
++++|+++||++||++|+.||.+|||++.+|++.+... +.++++.++.. +..+++..+.+|.|+++++++||++ .
T Consensus 484 ~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~-~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~ 562 (644)
T PRK10733 484 HVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEE-EGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQ 562 (644)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccc-ccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999888643 34444443221 2345566777799999999999984 3
Q ss_pred hh--hccccc
Q psy5435 216 VI--EHDFLQ 223 (245)
Q Consensus 216 ~~--~~~~~~ 223 (245)
++ +++.|+
T Consensus 563 iL~~~~~~l~ 572 (644)
T PRK10733 563 LLTDNMDILH 572 (644)
T ss_pred HHHHhHHHHH
Confidence 44 344444
No 4
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.4e-22 Score=186.81 Aligned_cols=152 Identities=30% Similarity=0.402 Sum_probs=134.5
Q ss_pred EEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhH
Q psy5435 55 TVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVS 133 (245)
Q Consensus 55 ~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~a 133 (245)
.++-.-+-=.+||++||+.++.++++... +++++|+|||.++||+.++|+ |...++++.+.+++++.+|||+|
T Consensus 400 vise~ek~~~AYhEaghalv~~~l~~~d~------v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaA 473 (596)
T COG0465 400 VISEAEKKITAYHEAGHALVGLLLPDADP------VHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAA 473 (596)
T ss_pred ccChhhhcchHHHHHHHHHHHHhCCCCcc------cceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHh
Confidence 34434455578999999999999999999 999999999999999999998 59999999999999999999999
Q ss_pred HHHHhC-CCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhh-hhhhHHHhhccchHHHHHHHHhc
Q psy5435 134 EEIFFG-RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVL-ALEGLDVLGRSQDGVAQRSALEC 211 (245)
Q Consensus 134 Eel~~~-~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~e~~~~~~~~ 211 (245)
|+++|+ ++++|+++||+++|++|+.|+++|||++.+|++.+....+ +++.+.. .+..++++++.||.|+++++++|
T Consensus 474 Eel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~ID~evk~ii~~~ 551 (596)
T COG0465 474 EELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEG--VFLGRYQKAKNYSEETAQEIDREVKDIIDEA 551 (596)
T ss_pred hhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhccc--ccccccccccCccHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999975432 6665543 23477777888899999999999
Q ss_pred ccc
Q psy5435 212 GGV 214 (245)
Q Consensus 212 ~~~ 214 (245)
|+.
T Consensus 552 y~~ 554 (596)
T COG0465 552 YER 554 (596)
T ss_pred HHH
Confidence 984
No 5
>CHL00176 ftsH cell division protein; Validated
Probab=99.84 E-value=2.9e-21 Score=186.05 Aligned_cols=153 Identities=24% Similarity=0.362 Sum_probs=128.7
Q ss_pred cccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHhC--C
Q psy5435 64 SRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFG--R 140 (245)
Q Consensus 64 s~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~~--~ 140 (245)
.+||++||+.+++++.+..+ +.+++|.|||.++|++...|. |...++++.+.++|.+.||||+||+++|+ .
T Consensus 441 vA~hEaGhA~v~~~l~~~~~------v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~ 514 (638)
T CHL00176 441 IAYHEVGHAIVGTLLPNHDP------VQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTE 514 (638)
T ss_pred HHHHhhhhHHHHhhccCCCc------eEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCC
Confidence 48999999999999999888 999999999999999999996 77899999999999999999999999998 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhhh--hhhHHHhhccchHHHHHHHHhcccc--ch
Q psy5435 141 ITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVLA--LEGLDVLGRSQDGVAQRSALECGGV--KV 216 (245)
Q Consensus 141 ~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~e~~~~~~~~~~~--~~ 216 (245)
+++|+.+||++||++|+.|+.+|||++ +|++.+..+.+++.++.+... ...++++.+.+|.|+++++++||++ .+
T Consensus 515 ~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~i 593 (638)
T CHL00176 515 VTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQI 593 (638)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 999888654443445544322 1234555677799999999999984 44
Q ss_pred h--hccccc
Q psy5435 217 I--EHDFLQ 223 (245)
Q Consensus 217 ~--~~~~~~ 223 (245)
+ +++.|+
T Consensus 594 L~~~~~~l~ 602 (638)
T CHL00176 594 LKDNRVLID 602 (638)
T ss_pred HHHhHHHHH
Confidence 4 355554
No 6
>KOG0731|consensus
Probab=99.82 E-value=1.6e-20 Score=180.49 Aligned_cols=151 Identities=36% Similarity=0.507 Sum_probs=127.4
Q ss_pred eEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCcchhhchHHHHHHHHHHhhchhh
Q psy5435 53 TATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRV 132 (245)
Q Consensus 53 ~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~e~~~~t~~~L~~~l~~~L~g~~ 132 (245)
...+..--+.=-++|++||++++|++++... +.+++|.| |+++||+.+.|.|...+++++|.++|++.||||+
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dp------l~kvsIiP-GqalG~a~~~P~~~~l~sk~ql~~rm~m~LGGRa 633 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADP------LLKVSIIP-GQALGYAQYLPTDDYLLSKEQLFDRMVMALGGRA 633 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCc------ceeEEecc-CCccceEEECCcccccccHHHHHHHHHHHhCcch
Confidence 3333333444557899999999999999999 99999999 6699999999998899999999999999999999
Q ss_pred HHHHHhC-CCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhhhhhhHHHhhccchHHHHHHHHhc
Q psy5435 133 SEEIFFG-RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVLALEGLDVLGRSQDGVAQRSALEC 211 (245)
Q Consensus 133 aEel~~~-~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~ 211 (245)
||+++|+ ++++|+.+||+++|++|++||..|||++..|++++..+...+ +......+....+.||.|+++++.+|
T Consensus 634 AEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~----~~~~~p~s~~~~~~Id~ev~~lv~~a 709 (774)
T KOG0731|consen 634 AEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGD----ESFRKPYSEKTAQLIDTEVRRLVQKA 709 (774)
T ss_pred hhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCccccc----ccccCccchhHHHHHHHHHHHHHhhH
Confidence 9999996 899999999999999999999999999999999985332212 12223344555677799999999999
Q ss_pred ccc
Q psy5435 212 GGV 214 (245)
Q Consensus 212 ~~~ 214 (245)
|++
T Consensus 710 y~~ 712 (774)
T KOG0731|consen 710 YER 712 (774)
T ss_pred HHH
Confidence 994
No 7
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=161.66 Aligned_cols=182 Identities=25% Similarity=0.340 Sum_probs=137.3
Q ss_pred CCCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecccccee--
Q psy5435 27 SVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLG-- 103 (245)
Q Consensus 27 ~~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG-- 103 (245)
....+.+++.+|+||++++ .+.+..|.+++.+++++||++|++++.|+|||++||+|+||+++... ++.......|
T Consensus 11 ~~~~~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~-~i~~~~~~~G~~ 89 (438)
T COG0612 11 LPALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSA-ELAEAFEKLGGQ 89 (438)
T ss_pred ccccccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChH-HHHHHHHHhcCe
Confidence 3344569999999999999 77777999999999999999999999999999999999998885332 4555443333
Q ss_pred EEEEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCCCCc------CcC-ccccc
Q psy5435 104 YAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEK------VGK-SESKL 176 (245)
Q Consensus 104 ~~~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm~~~------~g~-~~~~~ 176 (245)
.+++++.|.+.+..+.+.+++...+. +..+++++ +....+++++.+....+-+...--+.. +.. .+.+.
T Consensus 90 ~na~ts~d~t~y~~~~l~~~~~~~l~--llad~l~~--p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~ 165 (438)
T COG0612 90 LNAFTSFDYTVYYLSVLPDNLDKALD--LLADILLN--PTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNH 165 (438)
T ss_pred eeccccchhhhhhhhhchhhhHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccC
Confidence 67777889999999888999999998 77777777 667888999999888777766321110 000 11111
Q ss_pred ccCcchh-hhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEe
Q psy5435 177 VDHREVL-VQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTL 240 (245)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
+-++.++ ..+.....+++++ +.||.+||+|+++++++
T Consensus 166 p~~~~~~G~~e~I~~it~~dl---------------------------~~f~~k~Y~p~n~~l~v 203 (438)
T COG0612 166 PLGRPILGTEESIEAITREDL---------------------------KDFYQKWYQPDNMVLVV 203 (438)
T ss_pred CCCCCCCCCHHHHHhCCHHHH---------------------------HHHHHHhcCcCceEEEE
Confidence 1111111 1367778899999 99999999999999986
No 8
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.76 E-value=9.9e-19 Score=169.58 Aligned_cols=124 Identities=22% Similarity=0.142 Sum_probs=102.3
Q ss_pred EEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEEcCcc
Q psy5435 35 VTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQYLPRE 111 (245)
Q Consensus 35 ~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~~~~e 111 (245)
+.+|+|||+|+ .+++..|+|++.++|++||++|+.++.|+|||++||+|+||+++....+|.... .++.+++++..|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 46899999999 889999999999999999999999999999999999999999963323455554 345577888889
Q ss_pred hhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy5435 112 QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAH 162 (245)
Q Consensus 112 ~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~ 162 (245)
.+.|+.+++.+++...|. +..+++.+ +....+++++.+....+-+..
T Consensus 82 ~T~y~~~v~~~~l~~aL~--lLaD~l~~--P~f~eeeierEr~vvl~Ei~~ 128 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLA--RLCDMLAR--PLLTAEDQQREREVLEAEYIA 128 (696)
T ss_pred eEEEEEEecHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 44555555 667778898888887665554
No 9
>KOG0960|consensus
Probab=99.74 E-value=5e-18 Score=151.01 Aligned_cols=132 Identities=36% Similarity=0.569 Sum_probs=107.6
Q ss_pred CCCCCccEEEEcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhcccccccccccc-ceeeeeeccccceeEE
Q psy5435 27 SVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENG-FYFYYFSNASKGLGYA 105 (245)
Q Consensus 27 ~~~~p~~~~~~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~-~~~~tI~~rg~~lG~~ 105 (245)
....|+.+.++|+||++|+.++++.+++++++||++|||+|++-..|+|||+|||.||||+++ ...++..-..-|...+
T Consensus 28 ~~~~P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLN 107 (467)
T KOG0960|consen 28 LLSVPETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLN 107 (467)
T ss_pred hccCCcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhc
Confidence 455789999999999999999889999999999999999999999999999999999999997 2333433344556688
Q ss_pred EEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy5435 106 QYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAH 162 (245)
Q Consensus 106 ~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~ 162 (245)
+++.+|.+.|..+++.+++..++. +..+++-+ ++....++++.+.....-.+.
T Consensus 108 AytSReqT~yyakal~~dv~kavd--iLaDIlqn--s~L~~s~IerER~vILrEmqe 160 (467)
T KOG0960|consen 108 AYTSREQTVYYAKALSKDVPKAVD--ILADILQN--SKLEESAIERERDVILREMQE 160 (467)
T ss_pred ccccccceeeehhhccccchHHHH--HHHHHHHh--CccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999998888 44446655 445556788887776655554
No 10
>PRK15101 protease3; Provisional
Probab=99.72 E-value=1.4e-17 Score=168.22 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=103.6
Q ss_pred CccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEE
Q psy5435 31 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQY 107 (245)
Q Consensus 31 p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~ 107 (245)
..++..+|+|||+|+ ++++..|.+++.+++++||++|+.++.|+|||++||+|+||++++..-.+.... .|+..+++
T Consensus 42 ~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~ 121 (961)
T PRK15101 42 RQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNAS 121 (961)
T ss_pred cceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccce
Confidence 467778999999999 889999999999999999999999999999999999999999975444444432 33457788
Q ss_pred cCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy5435 108 LPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAH 162 (245)
Q Consensus 108 ~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~ 162 (245)
+..|.+.|..++..+++..+|. +..+++.. +....+++++.+....+-...
T Consensus 122 T~~d~T~y~~~~~~~~l~~aL~--~~ad~~~~--P~f~~~~~erE~~~v~~E~~~ 172 (961)
T PRK15101 122 TASYRTAFYLEVENDALPPAVD--RLADAIAE--PLLDPKNADRERNAVNAELTM 172 (961)
T ss_pred ECCCceEEEEEcCHHHHHHHHH--HHHHHHhc--cCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988 44445544 566778888887776665543
No 11
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.69 E-value=6.9e-17 Score=152.55 Aligned_cols=148 Identities=31% Similarity=0.446 Sum_probs=121.5
Q ss_pred ccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHhCCC
Q psy5435 63 GSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFGRI 141 (245)
Q Consensus 63 Gs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~ 141 (245)
--++|++||+.+++++.+... +.+++|.||+..+|++...+. +....+++.+.+++.+.|||++||+++|+++
T Consensus 313 ~~A~hEaGhAlv~~~l~~~~~------v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~ 386 (495)
T TIGR01241 313 LVAYHEAGHALVGLLLKDADP------VHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEV 386 (495)
T ss_pred HHHHHHHhHHHHHHhcCCCCc------eEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 357899999999999988777 899999999999999998887 4778899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhh--hhhhhHHHhhccchHHHHHHHHhcccc--chh
Q psy5435 142 TTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQV--LALEGLDVLGRSQDGVAQRSALECGGV--KVI 217 (245)
Q Consensus 142 ~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~e~~~~~~~~~~~--~~~ 217 (245)
++|+.+||++|+++|+.|+.+|||++.+|++.+... +.+.++... .....++++.+.+|.++++++++||++ .++
T Consensus 387 s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~-~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL 465 (495)
T TIGR01241 387 TTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSD-GGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQIL 465 (495)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccC-ccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877532 222222111 011233444555699999999999984 444
No 12
>KOG2067|consensus
Probab=99.60 E-value=2.8e-15 Score=133.76 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=101.4
Q ss_pred CccEEEEcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccc--eeEEEEc
Q psy5435 31 PSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKG--LGYAQYL 108 (245)
Q Consensus 31 p~~~~~~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~--lG~~~~~ 108 (245)
-+.+.++|||||+|..++...+.++++++|++||+||.+.-.|++|+++.+.|++|.++..+ +|....+. +.+.++.
T Consensus 23 ~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~-ei~~~LE~~GGn~~cqs 101 (472)
T KOG2067|consen 23 SNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSK-EILAELEKLGGNCDCQS 101 (472)
T ss_pred ccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHH-HHHHHHHHhCCcccccc
Confidence 37788999999999999999999999999999999999999999999999999999998666 77776544 4467788
Q ss_pred CcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHH
Q psy5435 109 PREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAY 157 (245)
Q Consensus 109 ~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~ 157 (245)
++|.++|+.+...+.++.... .++|.++.. .....+++.++....
T Consensus 102 SRetm~Yaas~~~~~v~sm~~-lLadtV~~P---~~~d~ev~~~~~~v~ 146 (472)
T KOG2067|consen 102 SRETMMYAASADSDGVDSMVE-LLADTVLNP---KFTDQEVEEARRAVK 146 (472)
T ss_pred cHhhhHHHHHhhhcccHHHHH-HHHHHHhcc---cccHHHHHHHHHhhh
Confidence 899999999999999888777 666666544 444567777765543
No 13
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-12 Score=128.27 Aligned_cols=107 Identities=25% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeec--ccccee
Q psy5435 27 SVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSN--ASKGLG 103 (245)
Q Consensus 27 ~~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~--rg~~lG 103 (245)
....++++.-+|||||+++ +.|+..+.....+.|++||..||.++.|+|||+|||+|.||++|++.-.... .-.+++
T Consensus 18 ~~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs 97 (937)
T COG1025 18 ALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGS 97 (937)
T ss_pred cccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCc
Confidence 3445789999999999999 9999999999999999999999999999999999999999999964433332 224567
Q ss_pred EEEEcCcchhhchHHHHHHHHHHhhchhhHH
Q psy5435 104 YAQYLPREQYLYSKEQLLDRMCMTLGGRVSE 134 (245)
Q Consensus 104 ~~~~~~~e~~~~t~~~L~~~l~~~L~g~~aE 134 (245)
+++++-.+++.+.++...+.+...++ |.+.
T Consensus 98 ~NA~T~~~~T~fyFeV~~~al~~ALD-rFa~ 127 (937)
T COG1025 98 HNASTAGERTAFYFEVENDALEGALD-RFAD 127 (937)
T ss_pred cccccCCCceeEEEEecHHHHHHHHH-HHHH
Confidence 88888888888888887777777776 5554
No 14
>KOG2583|consensus
Probab=99.30 E-value=1.7e-12 Score=116.10 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=82.5
Q ss_pred ccEEEEcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecccccee--EEEEcC
Q psy5435 32 STQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLG--YAQYLP 109 (245)
Q Consensus 32 ~~~~~~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG--~~~~~~ 109 (245)
....++|.|||+|...+...|+.++.+.|++|||||+..+.|++|+++...++.|+++ ....|......+| .+.+..
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~-sal~ivr~se~~GG~Lss~~t 100 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQER-SALKIVRESEQLGGTLSSTAT 100 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCcccc-chhhhhhhhHhhCceeeeeee
Confidence 4567899999999988999999999999999999999999999999999999999996 7777777655444 555666
Q ss_pred cchhhchHHHHHHHHHHhhc
Q psy5435 110 REQYLYSKEQLLDRMCMTLG 129 (245)
Q Consensus 110 ~e~~~~t~~~L~~~l~~~L~ 129 (245)
+|.+.++..++.+++...|.
T Consensus 101 Re~~~~tvt~lrd~~~~~l~ 120 (429)
T KOG2583|consen 101 RELIGLTVTFLRDDLEYYLS 120 (429)
T ss_pred cceEEEEEEEecccHHHHHH
Confidence 78888888888888777665
No 15
>KOG0959|consensus
Probab=99.23 E-value=1.6e-11 Score=121.85 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=89.5
Q ss_pred ccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeec--cccceeEEEEc
Q psy5435 32 STQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSN--ASKGLGYAQYL 108 (245)
Q Consensus 32 ~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~--rg~~lG~~~~~ 108 (245)
.+...+|+|||+++ +.|+..-..+..+-|++||..||.+.+|+|||+|||+|.||++|+..=.... .-.++..++++
T Consensus 27 ~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T 106 (974)
T KOG0959|consen 27 EYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYT 106 (974)
T ss_pred ceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCcccccc
Confidence 78889999999998 8887766788888999999999999999999999999999999853221111 22456678888
Q ss_pred CcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHH
Q psy5435 109 PREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQ 154 (245)
Q Consensus 109 ~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~ 154 (245)
..|++.|..+.-.+++..+|. |.|+-.+ . +....++.++...
T Consensus 107 ~~e~T~y~F~V~~~~l~~ALD-rFaqFf~-~--Plf~~~a~eREv~ 148 (974)
T KOG0959|consen 107 DSEHTNYYFDVQHDHLEGALD-RFAQFFS-D--PLFNKSATEREVG 148 (974)
T ss_pred ccccceEEEecchHHHHHHHH-HHHHHhh-C--cccChHHHHHHHH
Confidence 889888888888888888887 5555333 2 2333344555444
No 16
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.16 E-value=1.6e-11 Score=97.65 Aligned_cols=116 Identities=23% Similarity=0.429 Sum_probs=89.0
Q ss_pred EEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEEcCcchhhchHHH
Q psy5435 43 RVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQYLPREQYLYSKEQ 119 (245)
Q Consensus 43 ~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~~~~e~~~~t~~~ 119 (245)
+|+ .+++..|++++.+++++|+++|+.++.|+||+++||+++||+++ ...++.... .++.+...+..|.+.++.+.
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~-~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~ 79 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKY-SSDELQEELESLGASFNASTSRDSTSYSASV 79 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSS-BHHHHHHHHHHTTCEEEEEEESSEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchh-hhhhhHHHhhhhccccceEecccceEEEEEE
Confidence 577 67889999999999999999999999999999999999999997 334444433 33456777777888888888
Q ss_pred HHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy5435 120 LLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHF 163 (245)
Q Consensus 120 L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~ 163 (245)
+.+++...|. +..+++.. +.....++++.+.....-+.+.
T Consensus 80 ~~~~~~~~l~--~l~~~~~~--P~f~~~~~~~~r~~~~~ei~~~ 119 (149)
T PF00675_consen 80 LSEDLEKALE--LLADMLFN--PSFDEEEFEREREQILQEIEEI 119 (149)
T ss_dssp EGGGHHHHHH--HHHHHHHS--BGGCHHHHHHHHHHHHHHHHHH
T ss_pred ecccchhHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHHH
Confidence 8888887777 55555555 5666788888888766555543
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.11 E-value=7.4e-11 Score=120.91 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=73.2
Q ss_pred CccEEEEcCCCCEEE-Ee--cCCCCeEEEEEEEecccccccccccchhhhccccccccccccceee---eeeccccceeE
Q psy5435 31 PSTQVTSIDNGLRVA-TE--DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY---YFSNASKGLGY 104 (245)
Q Consensus 31 p~~~~~~L~NGl~v~-~~--~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~---tI~~rg~~lG~ 104 (245)
..+...-.+||++|+ .. ++..|.+++.++|++|+. +..|+||++|||+++||++++.+- .+..+|.+...
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 345666688999998 55 334578999999999984 469999999999999999974222 22222333446
Q ss_pred EEEcCcchhhchHHHHHH-HHHHhhchhhHHHHH
Q psy5435 105 AQYLPREQYLYSKEQLLD-RMCMTLGGRVSEEIF 137 (245)
Q Consensus 105 ~~~~~~e~~~~t~~~L~~-~l~~~L~g~~aEel~ 137 (245)
++++..|.+.|....+.+ ++..+|. ..++-++
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ld-v~~d~v~ 198 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTAD-VYMDSVF 198 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHH-HHHHHHh
Confidence 888888999998887754 5777777 4444443
No 18
>PRK15101 protease3; Provisional
Probab=98.02 E-value=5.5e-06 Score=84.30 Aligned_cols=173 Identities=11% Similarity=0.115 Sum_probs=110.0
Q ss_pred ccEEEEcCCCCEEE-EecC---CCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEE
Q psy5435 32 STQVTSIDNGLRVA-TEDS---GAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQY 107 (245)
Q Consensus 32 ~~~~~~L~NGl~v~-~~~~---~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~ 107 (245)
.++.-.++||++|+ .+++ ..|.+.+.+.+++|+..+++.+.|++.++..++... ...+.-.....++.+...
T Consensus 522 ~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~----l~e~~y~a~~aG~~~~~~ 597 (961)
T PRK15101 522 HPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLA----LDQLSNQASVGGISFSTN 597 (961)
T ss_pred CCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHH----HHHHhchHHhcCcEEEEc
Confidence 35777899999999 8888 789999999999999999999999999999887421 111111122234445555
Q ss_pred cCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCccc------ccccCcc
Q psy5435 108 LPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSES------KLVDHRE 181 (245)
Q Consensus 108 ~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~------~~~~~~~ 181 (245)
..+.+.++...+.+++..++. .+++.+. . +....++|++++....+.+..+..+..+....+ ..+....
T Consensus 598 -~~~g~~i~v~g~s~~l~~ll~-~l~d~l~-~--~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~ 672 (961)
T PRK15101 598 -ANNGLMVNANGYTQRLPQLLQ-ALLEGYF-S--FTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFER 672 (961)
T ss_pred -cCCCEEEEEEecChhHHHHHH-HHHHHHh-c--CCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCH
Confidence 456677776677777777777 4444433 2 334567888888777766655432221111110 1111111
Q ss_pred hhhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEe
Q psy5435 182 VLVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTL 240 (245)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
....+.....+.+++ +.||..+|.|.++++.+
T Consensus 673 ~~~~~~l~~it~edl---------------------------~~f~~~~~~~~~~~~~v 704 (961)
T PRK15101 673 DERRKLLPSITLKDV---------------------------LAYRDALLSGATPEFLV 704 (961)
T ss_pred HHHHHHHhcCCHHHH---------------------------HHHHHHHHHhceEEEEE
Confidence 122345556777777 77888888887776554
No 19
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.54 E-value=6e-05 Score=79.75 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=61.1
Q ss_pred ccccccccccchhhhccccccccccccceeeeeec------cccceeEEEEcCcchhhchHHHHHHHHHHhhchhhHHHH
Q psy5435 63 GSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSN------ASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEI 136 (245)
Q Consensus 63 Gs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~------rg~~lG~~~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel 136 (245)
+-++++.|||.+++++.+... +++++|.+ ++.+.|++++.+.+ +.++...+..+|...|||+|||++
T Consensus 1892 ~ia~yEiGhAvvq~~L~~~~p------v~kISIy~~~~~~r~~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedl 1964 (2281)
T CHL00206 1892 GILFYQIGRAVAQNVLLSNCP------IDPISIYMKKKSCKEGDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDL 1964 (2281)
T ss_pred hhhhhHHhHHHHHHhccCCCC------cceEEEecCCccccCcccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhh
Confidence 457889999999999998888 89999853 24567999999877 788999999999999999999999
Q ss_pred HhC
Q psy5435 137 FFG 139 (245)
Q Consensus 137 ~~~ 139 (245)
+|.
T Consensus 1965 wf~ 1967 (2281)
T CHL00206 1965 WSL 1967 (2281)
T ss_pred ccC
Confidence 986
No 20
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=96.34 E-value=0.0018 Score=64.99 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=53.3
Q ss_pred EcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceee---eeeccccceeEEEEcCcchh
Q psy5435 37 SIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY---YFSNASKGLGYAQYLPREQY 113 (245)
Q Consensus 37 ~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~---tI~~rg~~lG~~~~~~~e~~ 113 (245)
.-++|++++.-.+.-|-..+.+.|++ +|.+..||+|.+||+.+-|+++|+-+- ++..|.-..=.++.+..|.+
T Consensus 26 H~~TGa~l~hi~~~d~~~vFsi~F~T----~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T 101 (978)
T COG1026 26 HEKTGAELAHIKNEDPNNVFSIAFKT----EPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKT 101 (978)
T ss_pred eccCCceEEEecCCCcCceEEEEeec----CCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcc
Confidence 34699999955556888888888854 677789999999999999999985443 23332222224555556666
Q ss_pred hchHH
Q psy5435 114 LYSKE 118 (245)
Q Consensus 114 ~~t~~ 118 (245)
.|...
T Consensus 102 ~YP~s 106 (978)
T COG1026 102 VYPAS 106 (978)
T ss_pred eeecc
Confidence 55443
No 21
>KOG0961|consensus
Probab=93.94 E-value=0.2 Score=49.01 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCccEEEEcCC---CCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeec-cccce-e
Q psy5435 29 NVPSTQVTSIDN---GLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSN-ASKGL-G 103 (245)
Q Consensus 29 ~~p~~~~~~L~N---Gl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~-rg~~l-G 103 (245)
-.|.+..++.-| |++|++-.+..+.|.-.+.+.. |-....|+-|-+||+.|.|+++|+.+=-+.. .+..+ .
T Consensus 14 ~~~~y~~~kyis~~Tkl~va~~~~pts~vhG~f~v~T----Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~d 89 (1022)
T KOG0961|consen 14 LNGGYKLFKYISKNTKLRVAIGEVPTSMVHGAFSVVT----EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLAD 89 (1022)
T ss_pred ecCceEEEEEeccccceEEEEeecCCcceeeeEEeee----eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcc
Confidence 346777777655 8899866667778877777644 3344689999999999999999864421111 12222 2
Q ss_pred EEEEcCcchhhchHH
Q psy5435 104 YAQYLPREQYLYSKE 118 (245)
Q Consensus 104 ~~~~~~~e~~~~t~~ 118 (245)
.+++++.|++.|+++
T Consensus 90 tNAwTDtD~T~YtLS 104 (1022)
T KOG0961|consen 90 TNAWTDTDHTAYTLS 104 (1022)
T ss_pred cccccccCcceEEee
Confidence 455555566655544
No 22
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=84.27 E-value=0.76 Score=43.25 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=36.4
Q ss_pred EcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhcccccc
Q psy5435 37 SIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAF 83 (245)
Q Consensus 37 ~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~ 83 (245)
.|+||+||.+.+.-..-+.+++. +-|-..+-.+--|+||++||.+-
T Consensus 3 vL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI 48 (590)
T PF03410_consen 3 VLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI 48 (590)
T ss_pred EecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee
Confidence 58999999965555556777764 44777888888999999999885
No 23
>PHA03081 putative metalloprotease; Provisional
Probab=69.35 E-value=3.9 Score=38.73 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=35.6
Q ss_pred EcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhcccccc
Q psy5435 37 SIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAF 83 (245)
Q Consensus 37 ~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~ 83 (245)
.|+||++|.+.+.-..-+.+++. +-|-..+-.+--|+||++||.+-
T Consensus 3 ~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili 48 (595)
T PHA03081 3 VLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI 48 (595)
T ss_pred EecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee
Confidence 68999999965545556666654 44777777888999999999885
No 24
>KOG2019|consensus
Probab=38.11 E-value=32 Score=34.38 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=35.9
Q ss_pred EcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccc
Q psy5435 37 SIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGF 90 (245)
Q Consensus 37 ~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~ 90 (245)
-=+-|-+++..+.+-+--.+++.|+ .-|.+..|+-|.+||..-=|+.+|+
T Consensus 58 H~~Tgae~lhl~reD~N~vFsI~Fr----Tpp~dstGiPHILEHtvLCGS~KYP 107 (998)
T KOG2019|consen 58 HKKTGAEVLHLDREDENNVFSIVFR----TPPKDSTGIPHILEHTVLCGSRKYP 107 (998)
T ss_pred ecCCCceeEeeccCCCCceeEEEee----cCCCccCCCchhhhhheeeccCcCc
Confidence 3456888884454555445555554 4566789999999999998988874
No 25
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=22.21 E-value=3.7e+02 Score=22.82 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred CccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecc----ccceeEE
Q psy5435 31 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNA----SKGLGYA 105 (245)
Q Consensus 31 p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~r----g~~lG~~ 105 (245)
+++....+ +|..|+ .+.+...++.+.+.|+.....++ ...-+.-|..-+..-||+++ +-.++..+ .++.+++
T Consensus 69 ~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~-sy~el~~~i~~~tGGis~~ 145 (248)
T PF08367_consen 69 IPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNY-SYEELSNEIDLYTGGISFS 145 (248)
T ss_dssp ---EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS--HHHHHHHHHHHSSEEEEE
T ss_pred CCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCeEEE
Confidence 33343333 789998 77778889999999999966544 35666666665555688885 33322222 2333322
Q ss_pred EEcCc---------chhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy5435 106 QYLPR---------EQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161 (245)
Q Consensus 106 ~~~~~---------e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~ 161 (245)
..... -.+.++..+|.+++..++. +..+++.. +.+ +|-++...+..++..
T Consensus 146 ~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~--ll~eil~~--~~f--~d~~rl~~ll~~~~s 204 (248)
T PF08367_consen 146 IEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFE--LLSEILTE--TDF--DDKERLKELLKELKS 204 (248)
T ss_dssp EEEEEEECTECCCEEEEEEEEEEEGGGHHHHHH--HHHHHHHC--B-T--T-HHHHHHHHHHHHH
T ss_pred eeeccCCCCccceeEEEEEEEEeHhhhHHHHHH--HHHHHHhc--cCC--CcHHHHHHHHHHHHH
Confidence 21111 2456777888888888888 67777766 222 244444444443333
No 26
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=21.69 E-value=53 Score=23.89 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=10.3
Q ss_pred EEEcCCCCEEE-Ee
Q psy5435 35 VTSIDNGLRVA-TE 47 (245)
Q Consensus 35 ~~~L~NGl~v~-~~ 47 (245)
..-|.|||+|+ .+
T Consensus 9 vRyltngLKVYYlP 22 (90)
T PF08288_consen 9 VRYLTNGLKVYYLP 22 (90)
T ss_pred eEEcCCCeEEEeec
Confidence 35689999999 65
Done!