Query psy5435
Match_columns 245
No_of_seqs 238 out of 2037
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:27:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di4_A Zinc protease, cell div 99.9 4.1E-28 1.4E-32 206.3 4.4 152 65-224 20-179 (238)
2 2ce7_A Cell division protein F 99.9 2.5E-22 8.6E-27 187.0 6.0 156 62-224 273-436 (476)
3 2dhr_A FTSH; AAA+ protein, hex 99.8 2.6E-21 8.9E-26 181.1 2.6 152 63-224 289-446 (499)
4 3eoq_A Putative zinc protease; 99.7 4.1E-18 1.4E-22 154.1 7.1 172 33-241 2-188 (406)
5 3hdi_A Processing protease; CA 99.7 1.7E-17 5.6E-22 150.5 8.2 176 33-240 2-188 (421)
6 1pp9_A Ubiquinol-cytochrome C 99.7 2.2E-17 7.5E-22 151.1 6.5 178 27-240 8-199 (446)
7 1q2l_A Protease III; hydrolase 99.7 3.9E-17 1.3E-21 162.4 8.1 128 30-161 18-148 (939)
8 1hr6_A Alpha-MPP, mitochondria 99.7 6.8E-17 2.3E-21 149.3 7.7 180 30-241 3-192 (475)
9 3go9_A Insulinase family prote 99.7 2.9E-17 1E-21 153.2 4.3 122 28-154 21-154 (492)
10 3ami_A Zinc peptidase; alpha/b 99.7 9.9E-17 3.4E-21 146.6 6.9 174 31-240 5-194 (445)
11 1hr6_B Beta-MPP, mitochondrial 99.6 2.2E-16 7.5E-21 143.9 7.7 131 28-163 2-135 (443)
12 3cww_A Insulysin, insulin-degr 99.6 5.1E-16 1.8E-20 155.2 7.5 127 29-159 31-160 (990)
13 1pp9_B Ubiquinol-cytochrome C 99.6 1.9E-15 6.6E-20 137.1 7.8 129 28-162 19-150 (439)
14 3gwb_A Peptidase M16 inactive 99.6 2.2E-15 7.6E-20 136.5 7.3 132 26-163 7-143 (434)
15 3amj_B Zinc peptidase inactive 99.5 3.2E-15 1.1E-19 135.2 6.0 128 31-163 2-138 (424)
16 3cx5_A Cytochrome B-C1 complex 99.5 1.7E-14 5.9E-19 130.3 3.7 117 34-160 2-122 (431)
17 2fge_A Atprep2;, zinc metallop 99.4 1.1E-13 3.9E-18 138.5 2.7 97 28-129 33-134 (995)
18 3cx5_B Cytochrome B-C1 complex 99.4 4.6E-14 1.6E-18 124.8 -0.3 112 42-160 1-115 (352)
19 3s5m_A Falcilysin; M16 metallo 99.3 1.7E-13 5.8E-18 139.5 2.3 103 25-129 79-186 (1193)
20 3d3y_A Uncharacterized protein 99.2 4.1E-12 1.4E-16 114.3 4.2 74 36-112 6-83 (425)
21 1q2l_A Protease III; hydrolase 97.7 8.9E-06 3E-10 80.6 1.9 124 33-165 500-627 (939)
22 2fge_A Atprep2;, zinc metallop 96.8 0.00093 3.2E-08 66.7 5.3 122 35-163 555-691 (995)
23 3cww_A Insulysin, insulin-degr 96.1 0.0017 5.7E-08 64.7 1.9 124 34-165 520-646 (990)
24 3s5m_A Falcilysin; M16 metallo 86.4 0.37 1.3E-05 49.3 3.2 96 39-139 724-839 (1193)
25 3aqy_A Beta-1,3-glucan-binding 25.3 1.8E+02 0.0063 20.6 5.9 34 28-61 3-37 (106)
26 3ie4_A GRAM-negative binding p 22.3 1.2E+02 0.0043 21.6 4.5 32 29-60 2-35 (107)
No 1
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.94 E-value=4.1e-28 Score=206.25 Aligned_cols=152 Identities=27% Similarity=0.368 Sum_probs=112.1
Q ss_pred ccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHh--CCC
Q psy5435 65 RYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFF--GRI 141 (245)
Q Consensus 65 ~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~--~~~ 141 (245)
+||++||+.+++++++..+ +.++||+|||.++||+.+.|. |...++++.|.++|+++||||+||+++| +++
T Consensus 20 AyHEAGHAlva~~l~~~~p------V~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG~g~v 93 (238)
T 2di4_A 20 AIHEAGHALMGLVSDDDDK------VHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGI 93 (238)
T ss_dssp HHHHHHHHHHHHHCSSCCC------CCCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCc------eeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhCCCCc
Confidence 6899999999999999888 999999999999999999997 7889999999999999999999999999 789
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhh-hhhhhHHHhhccchHHHHHHHHhcccc--chh-
Q psy5435 142 TTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQV-LALEGLDVLGRSQDGVAQRSALECGGV--KVI- 217 (245)
Q Consensus 142 ~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~e~~~~~~~~~~~--~~~- 217 (245)
++|+++||++||++|+.||++|||++.+|++.|..+++ +++..+ .....++.+.+.||.|+++++++||++ .++
T Consensus 94 ttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~ 171 (238)
T 2di4_A 94 TTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVAN--PFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVE 171 (238)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcc--ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999874432 444311 122345556677799999999999984 454
Q ss_pred -hcccccc
Q psy5435 218 -EHDFLQV 224 (245)
Q Consensus 218 -~~~~~~~ 224 (245)
+++.|+.
T Consensus 172 ~nr~~L~~ 179 (238)
T 2di4_A 172 EYKEPLKA 179 (238)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 3455543
No 2
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=2.5e-22 Score=186.99 Aligned_cols=156 Identities=25% Similarity=0.383 Sum_probs=113.1
Q ss_pred cccccccccccchhhhccccccccccccceeeeeeccc-cceeEEEEcCc-chhhchHHHHHHHHHHhhchhhHHHHHhC
Q psy5435 62 AGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS-KGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFG 139 (245)
Q Consensus 62 aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg-~~lG~~~~~~~-e~~~~t~~~L~~~l~~~L~g~~aEel~~~ 139 (245)
...++|+.||+.+++++++... +.+++|.||| .++||+++.|. |...++++.+.++|+++||||+||+++|+
T Consensus 273 ~~~a~~e~G~a~~~~~l~~~~~------~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g 346 (476)
T 2ce7_A 273 RIIAYHEAGHAVVSTVVPNGEP------VHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG 346 (476)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCC------CCEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred hhhHHHHhhhHHHhhccCCccc------cceeeeecCcccccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcC
Confidence 4568899999999999998888 8999999999 99999999997 78889999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhh--hhhhHHHhhccchHHHHHHHHhcccc--c
Q psy5435 140 RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVL--ALEGLDVLGRSQDGVAQRSALECGGV--K 215 (245)
Q Consensus 140 ~~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~e~~~~~~~~~~~--~ 215 (245)
++++|+++||++||++|+.||.+|||++.+|++.|... +.++++.+.. ....++++.+.+|.|+++++++||++ .
T Consensus 347 ~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~ 425 (476)
T 2ce7_A 347 DVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKE-EQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKE 425 (476)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC--------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCC-CccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888643 2334444321 12344556677799999999999984 4
Q ss_pred hh--hcccccc
Q psy5435 216 VI--EHDFLQV 224 (245)
Q Consensus 216 ~~--~~~~~~~ 224 (245)
++ +++.|++
T Consensus 426 ~l~~~~~~l~~ 436 (476)
T 2ce7_A 426 IIRKYRKQLDN 436 (476)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHhHHHHHH
Confidence 44 3555543
No 3
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.81 E-value=2.6e-21 Score=181.10 Aligned_cols=152 Identities=24% Similarity=0.377 Sum_probs=125.5
Q ss_pred ccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc--chhhchHHHHHHHHHHhhchhhHHHHHhCC
Q psy5435 63 GSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR--EQYLYSKEQLLDRMCMTLGGRVSEEIFFGR 140 (245)
Q Consensus 63 Gs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~--e~~~~t~~~L~~~l~~~L~g~~aEel~~~~ 140 (245)
-.++|+.||+.++|++++... +.+++|.|+++.+|++. |+ |.+.+|++.+.++|++.||||+||+++|++
T Consensus 289 ~~a~~e~g~av~~~~l~~~~~------v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~ 360 (499)
T 2dhr_A 289 ITAYHEAGHALAAHFLEHADG------VHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDD 360 (499)
T ss_dssp HHHHHHHHHHHHHCCSSSCCC------CCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhHHHHHHHHHHHhhcCCCCe------eeEEEeecCCCcCcccc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcc
Confidence 356889999999999999888 99999999999999988 65 677789999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhCCCCcCcCcccccccCcchhhhhhhhhhhHHHhhccchHHHHHHHHhcccc--chh-
Q psy5435 141 ITTGAEDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQVLALEGLDVLGRSQDGVAQRSALECGGV--KVI- 217 (245)
Q Consensus 141 ~~~g~~~DL~~at~~a~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~--~~~- 217 (245)
+++|+++||++||++|+.||.+|||++.+|++.+....+ +++.++.....++++.+.||.|+++++++||++ .++
T Consensus 361 ~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~--~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~ 438 (499)
T 2dhr_A 361 VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED--TYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLL 438 (499)
T ss_dssp CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC--CSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc--cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988864332 333211122334555667799999999999984 444
Q ss_pred -hcccccc
Q psy5435 218 -EHDFLQV 224 (245)
Q Consensus 218 -~~~~~~~ 224 (245)
+++.|++
T Consensus 439 ~~~~~l~~ 446 (499)
T 2dhr_A 439 EKREVLER 446 (499)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 3555543
No 4
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.72 E-value=4.1e-18 Score=154.13 Aligned_cols=172 Identities=22% Similarity=0.311 Sum_probs=124.1
Q ss_pred cEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEEcC
Q psy5435 33 TQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQYLP 109 (245)
Q Consensus 33 ~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~~~ 109 (245)
+++.+|+|||+|+ .+++..|++++.+++++||++|+.++.|+|||++||+|+||+++ ...++.... .++.+++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDM-DALAVNRAFDRMGAQYNAFTS 80 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTC-CHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCccceec
Confidence 5789999999999 78888899999999999999999999999999999999999996 444444432 2445777788
Q ss_pred cchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCC-----------CCcCcC-cccccc
Q psy5435 110 REQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGM-----------NEKVGK-SESKLV 177 (245)
Q Consensus 110 ~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm-----------~~~~g~-~~~~~~ 177 (245)
.|.+.++.+++.+++...|. +..+++ . +....+++++.+....+-+....- ...++. ++..+.
T Consensus 81 ~d~t~y~~~~~~~~l~~~l~--ll~d~~-~--p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~ 155 (406)
T 3eoq_A 81 EEATVYYGAVLPEFAYDLLG--LFAKLL-R--PALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSV 155 (406)
T ss_dssp SSCEEEEEEECGGGHHHHHH--HHHHHT-S--CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCS
T ss_pred CCeEEEEEEecHHHHHHHHH--HHHHHh-c--CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 88888888877788887777 444444 5 566777888877665554443210 000111 111111
Q ss_pred cCcchhhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEec
Q psy5435 178 DHREVLVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTLD 241 (245)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
.+ ..+.....+.+++ +.||+.||+|+++++++-
T Consensus 156 ~G----~~~~i~~~t~~~l---------------------------~~f~~~~y~p~n~~l~v~ 188 (406)
T 3eoq_A 156 LG----TRESITALTREGM---------------------------AAYHRRRYLPKNMVLAAT 188 (406)
T ss_dssp SC----CHHHHHHCCHHHH---------------------------HHHHHHHCCGGGEEEEEE
T ss_pred cC----CHHHHhhCCHHHH---------------------------HHHHHHhCCccCEEEEEE
Confidence 11 1245566677777 999999999999999863
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.70 E-value=1.7e-17 Score=150.50 Aligned_cols=176 Identities=22% Similarity=0.328 Sum_probs=125.9
Q ss_pred cEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEEcC
Q psy5435 33 TQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQYLP 109 (245)
Q Consensus 33 ~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~~~ 109 (245)
+++.+|+|||+|+ .+++..|++++.+++++||++|+.++.|+|||++||+|+||+++ ...++.... .++.+++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTR-SAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSS-BHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHhCCceeeeec
Confidence 5789999999999 78888899999999999999999999999999999999999996 444444432 3456777888
Q ss_pred cchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCCCC------cCcCcccc-cccCcch
Q psy5435 110 REQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNE------KVGKSESK-LVDHREV 182 (245)
Q Consensus 110 ~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm~~------~~g~~~~~-~~~~~~~ 182 (245)
.|.+.++.+.+.+++...|. +..+++++ +....+++++.+....+.+....-+. .+....|. .+-....
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~ 156 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAID--TLSDMFFH--STFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPI 156 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHH--HHHHHHHS--BCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCT
T ss_pred cceEEEEEEecHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 88888888887788887777 55556666 56677888888877766655431110 00000010 0000010
Q ss_pred -hhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEe
Q psy5435 183 -LVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTL 240 (245)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
-..+.....+.+++ +.||+.||+|+++++++
T Consensus 157 ~G~~~~l~~it~~~l---------------------------~~f~~~~y~p~n~~l~v 188 (421)
T 3hdi_A 157 LGTVETLNSFNEGML---------------------------RHYMDRFYTGDYVVISV 188 (421)
T ss_dssp TCCHHHHHHCCHHHH---------------------------HHHHHHHSSTTTEEEEE
T ss_pred cCCHHHHHhCCHHHH---------------------------HHHHHHhcCcccEEEEE
Confidence 01244556677777 99999999999999876
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.68 E-value=2.2e-17 Score=151.07 Aligned_cols=178 Identities=28% Similarity=0.398 Sum_probs=124.8
Q ss_pred CCCCCccEEEEcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeE
Q psy5435 27 SVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGY 104 (245)
Q Consensus 27 ~~~~p~~~~~~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~ 104 (245)
.+..|.++..+|+||++|+..+...|.+++.+++++||++|+.++.|+||+++||+|+||+++ ...++.... .++++
T Consensus 8 ~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~l~~~G~~~ 86 (446)
T 1pp9_A 8 LQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNR-PGNALEKEVESMGAHL 86 (446)
T ss_dssp HTTSCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSS-TTTHHHHHHHHTTCEE
T ss_pred cccccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHcCCEE
Confidence 445688999999999999955555799999999999999999999999999999999999996 333344432 24567
Q ss_pred EEEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCCCC-----------cCc-Cc
Q psy5435 105 AQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNE-----------KVG-KS 172 (245)
Q Consensus 105 ~~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm~~-----------~~g-~~ 172 (245)
++++..|.+.++.+++.+++...+. +..+++++ +....+++++.+....+.+....-+. .++ .+
T Consensus 87 na~t~~d~t~~~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (446)
T 1pp9_A 87 NAYSTREHTAYYIKALSKDLPKAVE--LLADIVQN--CSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTP 162 (446)
T ss_dssp EEEECSSCEEEEEEEEGGGHHHHHH--HHHHHHHH--BCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSG
T ss_pred EEEEcCCeEEEEEEecHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCC
Confidence 7778888888877777777777777 44555555 55666778777777665555431110 011 01
Q ss_pred ccccccCcchhhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEe
Q psy5435 173 ESKLVDHREVLVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTL 240 (245)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
+..+..+ ..+.....+.+++ +.||+.||+|+++++++
T Consensus 163 ~~~~~~G----~~~~l~~~~~~~l---------------------------~~f~~~~y~p~n~~l~v 199 (446)
T 1pp9_A 163 LAQSVEG----PSENVRKLSRADL---------------------------TEYLSRHYKAPRMVLAA 199 (446)
T ss_dssp GGSCSSC----CHHHHHHCCHHHH---------------------------HHHHHHHCCGGGEEEEE
T ss_pred CCCCCcC----CHHHHHhCCHHHH---------------------------HHHHHhccCCCCEEEEE
Confidence 1100001 1134444566666 89999999999999876
No 7
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.68 E-value=3.9e-17 Score=162.38 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=96.6
Q ss_pred CCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEE
Q psy5435 30 VPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQ 106 (245)
Q Consensus 30 ~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~ 106 (245)
...++..+|+|||+|+ .+++..|.+++.+++++||++|+.+..|+|||+|||+|+||++++..-++.... .|+..++
T Consensus 18 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA 97 (939)
T 1q2l_A 18 NRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA 97 (939)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceE
Confidence 3458899999999999 888899999999999999999999999999999999999999975443443332 3445778
Q ss_pred EcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy5435 107 YLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161 (245)
Q Consensus 107 ~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~ 161 (245)
++..|.+.|..+...+.+...|. +.+ ++++. +....+++++.+....+-..
T Consensus 98 ~T~~d~T~y~~~~~~~~l~~~L~-~l~-d~~~~--p~f~~~~~~~Er~~v~~E~~ 148 (939)
T 1q2l_A 98 STAPYRTAFYLEVENDALPGAVD-RLA-DAIAE--PLLDKKYAERERNAVNAELT 148 (939)
T ss_dssp EECSSCEEEEEEECGGGHHHHHH-HHH-HHHHC--BCCCSTTHHHHHHHHHHHHH
T ss_pred EECCCcEEEEEEeCHHHHHHHHH-HHH-HHHhC--CCCCHHHHHHHHHHHHHHHH
Confidence 88888888777776677777776 333 34444 44555667776665544433
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.67 E-value=6.8e-17 Score=149.34 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=124.0
Q ss_pred CCccEEEEcCCCCEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEE
Q psy5435 30 VPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQY 107 (245)
Q Consensus 30 ~p~~~~~~L~NGl~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~ 107 (245)
.|.++..+|+|||+|+..+...|.+++.+++++||++|++++.|+|||++||+|+||+++ ...++.... .++.++++
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~-~~~~~~~~le~~G~~~na~ 81 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCT 81 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence 478899999999999965666799999999999999999999999999999999999986 444443322 24567778
Q ss_pred cCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCCCCc------CcCcccc-cccCc
Q psy5435 108 LPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEK------VGKSESK-LVDHR 180 (245)
Q Consensus 108 ~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm~~~------~g~~~~~-~~~~~ 180 (245)
+..|.+.++.+.+.+++...|. +..+++++ +....++|++.+....+.+....-+.. +....|. .+-..
T Consensus 82 t~~d~t~y~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 157 (475)
T 1hr6_A 82 SSRENLMYQASVFNQDVGKMLQ--LMSETVRF--PKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGS 157 (475)
T ss_dssp ECSSCEEEEEEECGGGHHHHHH--HHHHHHHC--BCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGS
T ss_pred EccCeEEEEEEecHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCC
Confidence 8888888877777777777777 44455555 556667788877776655554321110 0000010 00000
Q ss_pred c-hhhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEec
Q psy5435 181 E-VLVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTLD 241 (245)
Q Consensus 181 ~-~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
. .-..+.....+.+++ +.||+.||+|+++++++-
T Consensus 158 ~~~G~~~~l~~it~~~l---------------------------~~f~~~~y~p~n~~l~v~ 192 (475)
T 1hr6_A 158 PLICPRGLIPSISKYYL---------------------------LDYRNKFYTPENTVAAFV 192 (475)
T ss_dssp CSSCCGGGGGGCCHHHH---------------------------HHHHHHHCCGGGEEEEEE
T ss_pred CCcCCHHHHhhcCHHHH---------------------------HHHHHHhCCcccEEEEEe
Confidence 0 001134445566677 899999999999998764
No 9
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.66 E-value=2.9e-17 Score=153.19 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=91.7
Q ss_pred CCCCccEEEEcCCCCEEE-EecC--CCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeec----cc-
Q psy5435 28 VNVPSTQVTSIDNGLRVA-TEDS--GAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSN----AS- 99 (245)
Q Consensus 28 ~~~p~~~~~~L~NGl~v~-~~~~--~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~----rg- 99 (245)
..-|.+++.+|+|||+|+ .+++ ..|++++.+++++||++|++++.|+|||++||+|+||+++ ....+.. ..
T Consensus 21 ~~dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~~~~~~~ 99 (492)
T 3go9_A 21 QPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASF-TPAQLQSLWQQGID 99 (492)
T ss_dssp CBCTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTC-CHHHHHHHHHTCSC
T ss_pred CCCCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHH
Confidence 345789999999999998 6554 4679999999999999999999999999999999999996 3334442 22
Q ss_pred -cceeEEEEcCcchhhchHHHHH---HHHHHhhchhhHHHHHhCCCCCCChhHHHHHHH
Q psy5435 100 -KGLGYAQYLPREQYLYSKEQLL---DRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQ 154 (245)
Q Consensus 100 -~~lG~~~~~~~e~~~~t~~~L~---~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~ 154 (245)
.++.+++++..|.+.|..+.+. +++...|. +..+++.+ +....+++++.+.
T Consensus 100 ~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~er~ 154 (492)
T 3go9_A 100 NERPLPPAITSYDFTLYSLSLPNNRPDLLKDALA--WLSDTAGN--LAVSEQTVNAALN 154 (492)
T ss_dssp SSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHH--HHHHHHHC--CCCSHHHHHHHHT
T ss_pred hcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHH
Confidence 2334566677777777666665 56776676 44555555 5667778888765
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.65 E-value=9.9e-17 Score=146.65 Aligned_cols=174 Identities=23% Similarity=0.210 Sum_probs=122.4
Q ss_pred CccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeEEEE
Q psy5435 31 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGYAQY 107 (245)
Q Consensus 31 p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~~~~ 107 (245)
|.++..+|+||++|+ .+++..|.+++.+++++||++|+.++.|+||+++||+|+||+++. ..++.... .++.++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~-~~~l~~~l~~~g~~~na~ 83 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVG-PGEFSKRVAAMGGRDNAF 83 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSC-TTHHHHHHHHTTCEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCC-HHHHHHHHHHhCCccccc
Confidence 578999999999999 788889999999999999999999999999999999999999963 34444432 33457777
Q ss_pred cCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHH-HhCCCC-----------cCc-Cccc
Q psy5435 108 LPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA-HFGMNE-----------KVG-KSES 174 (245)
Q Consensus 108 ~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~-~~Gm~~-----------~~g-~~~~ 174 (245)
+..|.+.++.+...+++...|. +..++++. +....+++++.+....+.+. ...-+. .++ .++.
T Consensus 84 t~~d~t~y~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~ 159 (445)
T 3ami_A 84 TTRDYTAYYQQVPSSRLSDVMG--LEADRMAN--LVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYR 159 (445)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHH--HHHHHHHC--BCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGG
T ss_pred cCCCeEEEEEECCHHHHHHHHH--HHHHHhcC--CCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCC
Confidence 7788777766666666776666 44445555 55667778887776655444 221110 011 1111
Q ss_pred ccccCcchhhhhhhhhhhHHHhhccchHHHHHHHHhccccchhhccccccceeccccccCCeeEEe
Q psy5435 175 KLVDHREVLVQQVLALEGLDVLGRSQDGVAQRSALECGGVKVIEHDFLQVGFHFLHFTQDDATLTL 240 (245)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
.+..+ ..+.....+.+++ +.||+.||+|+++++++
T Consensus 160 ~~~~G----~~e~l~~it~~~l---------------------------~~f~~~~y~p~n~~l~v 194 (445)
T 3ami_A 160 VPVIG----WMNDIQNMTAQDV---------------------------RDWYKRWYGPNNATVVV 194 (445)
T ss_dssp SCTTC----CHHHHHHCCHHHH---------------------------HHHHHHHCSGGGEEEEE
T ss_pred CCCCC----CHHHHhhCCHHHH---------------------------HHHHHHhCCccceEEEE
Confidence 11101 1245556677777 89999999999998876
No 11
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.64 E-value=2.2e-16 Score=143.85 Aligned_cols=131 Identities=29% Similarity=0.417 Sum_probs=99.2
Q ss_pred CCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cceeE
Q psy5435 28 VNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGLGY 104 (245)
Q Consensus 28 ~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~lG~ 104 (245)
+.+|.++..+|+||++|+ .+.+..+.+.+.+++++|+++|+.++.|+||+++||+++||+++ ...++.... .++++
T Consensus 2 ~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~-~~~~l~~~l~~~g~~~ 80 (443)
T 1hr6_B 2 SQIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR-PQQGIELEIENIGSHL 80 (443)
T ss_dssp ---CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSC-BHHHHHHHHHHTTCEE
T ss_pred CCCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCC-CHHHHHHHHHHcCCeE
Confidence 456899999999999999 55555559999999999999999999999999999999999996 443444432 34567
Q ss_pred EEEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy5435 105 AQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHF 163 (245)
Q Consensus 105 ~~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~ 163 (245)
++++..|.+.++.+++.+++...|. +..++++. +....+++++.+....+.+...
T Consensus 81 na~t~~~~t~~~~~~~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~e~~~v~~e~~~~ 135 (443)
T 1hr6_B 81 NAYTSRENTVYYAKSLQEDIPKAVD--ILSDILTK--SVLDNSAIERERDVIIRESEEV 135 (443)
T ss_dssp EEEECSSEEEEEEEEEGGGHHHHHH--HHHHHHHS--BCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCeEEEEEEecHHHHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHhh
Confidence 7777778777777777777777777 55555555 5566777888777766665543
No 12
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.61 E-value=5.1e-16 Score=155.20 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=95.9
Q ss_pred CCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecc--ccceeEE
Q psy5435 29 NVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNA--SKGLGYA 105 (245)
Q Consensus 29 ~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~r--g~~lG~~ 105 (245)
..+.++..+|+|||+|+ .+++..|.+++.+++++||++|+.+..|+||++|||+|+||++++.+-.+... ..++..+
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 34678899999999999 88999999999999999999999999999999999999999998543333322 1344577
Q ss_pred EEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHH
Q psy5435 106 QYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQ 159 (245)
Q Consensus 106 ~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~ 159 (245)
+++..|.+.|..+...+++..+|. +. .+.++. +....+++++......+-
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~-~~-~d~~~~--p~f~~~~~~~E~~~V~~E 160 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALD-RF-AQFFLS--PLFDESAKDREVNAVDSE 160 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHH-HH-HGGGTC--BCCCHHHHHHHHHHHHHH
T ss_pred EEECCCceEEEEEeCHHHHHHHHH-HH-HHHHhC--cCCCHHHHHHHHHHHHHH
Confidence 888888887776666666666665 33 333444 455667777776655443
No 13
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.58 E-value=1.9e-15 Score=137.09 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=97.5
Q ss_pred CCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecc--ccceeE
Q psy5435 28 VNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNA--SKGLGY 104 (245)
Q Consensus 28 ~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~r--g~~lG~ 104 (245)
+..|.++..+|+||++|+ .++ ..|.+.+.+++++|+++|++++.|++|+++||+++||+++ ...++... ..++++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~-~~~~~~~~l~~~G~~~ 96 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKL 96 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSS-CHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcC-CHHHHHHHHHHhCCeE
Confidence 578999999999999999 666 8899999999999999999999999999999999999985 33333332 234567
Q ss_pred EEEcCcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q psy5435 105 AQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAH 162 (245)
Q Consensus 105 ~~~~~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~ 162 (245)
++++..|.+.++.+.+.+++...|. +..++++. +....+++++.+....+....
T Consensus 97 na~t~~~~t~~~~~~~~~~l~~~l~--ll~~~~~~--p~f~~~~~~~~k~~v~~e~~~ 150 (439)
T 1pp9_B 97 SVTSTRENMAYTVECLRDDVDILME--FLLNVTTA--PEFRRWEVAALQPQLRIDKAV 150 (439)
T ss_dssp EEEECSSCEEEEEEEEGGGHHHHHH--HHHHHHHC--BCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecceEEEEEEEeehhhHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHH
Confidence 7777778777777777777777776 44444444 455666777776665555443
No 14
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.57 E-value=2.2e-15 Score=136.50 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=97.1
Q ss_pred cCCCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccc--cce
Q psy5435 26 KSVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNAS--KGL 102 (245)
Q Consensus 26 ~~~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg--~~l 102 (245)
+....|.++..+|+||++|+ .+++..|.+++.+++++|+++| +++.|++|+++||+++||+++ ...++.... .++
T Consensus 7 ~~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~-~~~~l~~~l~~~g~ 84 (434)
T 3gwb_A 7 PSHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK-DVGAIAQGFEGLGA 84 (434)
T ss_dssp -----CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTE-EHHHHHHHHHTTTC
T ss_pred CcccCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccC-CHHHHHHHHHHhCC
Confidence 34556889999999999999 7888889999999999999999 899999999999999999985 444444432 356
Q ss_pred eEEEEcCcchhhchHHHHHHH--HHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy5435 103 GYAQYLPREQYLYSKEQLLDR--MCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHF 163 (245)
Q Consensus 103 G~~~~~~~e~~~~t~~~L~~~--l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~ 163 (245)
+++..+..|.+.++.+.+.++ +..++. +..++++. +....+++++.+....+.+...
T Consensus 85 ~~~a~t~~~~~~~~~~~~~~~~~l~~~l~--ll~~~~~~--p~f~~~~~~~~~~~~~~e~~~~ 143 (434)
T 3gwb_A 85 DFGNGAYKDMAVASLRSLSAVDKREPALK--LFAEVVGK--PTFPADSLARIKNQMLAGFEYQ 143 (434)
T ss_dssp EEEEEECSSCEEEEEEEECSHHHHHHHHH--HHHHHHHS--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCeEEEEEEecCccccHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHHh
Confidence 677777778777666665544 666666 33444444 4556677888777766655543
No 15
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.55 E-value=3.2e-15 Score=135.24 Aligned_cols=128 Identities=17% Similarity=0.079 Sum_probs=96.2
Q ss_pred CccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhcccccccccc----ccceeeeeeccc--ccee
Q psy5435 31 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRE----NGFYFYYFSNAS--KGLG 103 (245)
Q Consensus 31 p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~----~~~~~~tI~~rg--~~lG 103 (245)
|.+++.+|+||++|+ .+++..|.+.+.+++++|+++|+.++.|+||+++||+++||+ ++ ...++.... .++.
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~-~~~~~~~~l~~~G~~ 80 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSAL-DENAIADRLADIGAR 80 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCE-EHHHHHHHHHHTTCE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCC-CHHHHHHHHHHhCCE
Confidence 578999999999999 888889999999999999999999999999999999999999 75 444444432 2445
Q ss_pred EEEEcCcchhhchHHHHHHHH--HHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHh
Q psy5435 104 YAQYLPREQYLYSKEQLLDRM--CMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHF 163 (245)
Q Consensus 104 ~~~~~~~e~~~~t~~~L~~~l--~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~ 163 (245)
++.++..|.+.++.+.+.+++ ...|. +..+++.. +....+++++.+....+.+...
T Consensus 81 ~~a~t~~~~t~~~~~~~~~~~~l~~~l~--ll~~~~~~--p~f~~~~~~~e~~~v~~e~~~~ 138 (424)
T 3amj_B 81 LGGGAEADRASFSLRVLSSPAERNSALT--ILRDILAH--PTFPAPVLERERARAIAGLREA 138 (424)
T ss_dssp EEEEECSSCEEEEEEEESSHHHHHHHHH--HHHHHHHC--BCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCeEEEEEEEeccccChhHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHHHh
Confidence 667777777777666555555 55555 33444444 5566677888877766655543
No 16
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.46 E-value=1.7e-14 Score=130.33 Aligned_cols=117 Identities=24% Similarity=0.371 Sum_probs=84.2
Q ss_pred EEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCcch
Q psy5435 34 QVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPREQ 112 (245)
Q Consensus 34 ~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~e~ 112 (245)
+..+|+||++|+ .+++..|.+.+.+++++|+++|++++.|+||+++||+++||+++. ....++.+++++..|.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~~------~~~~G~~~na~t~~~~ 75 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV------AAKEGLALSSNISRDF 75 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHHHH------HHHTTCEEEEEECSSC
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCccc------HHHcCCeeeeeecCCe
Confidence 457899999999 788888999999999999999999999999999999999987641 1223445666666776
Q ss_pred hhchHHHHHHHHHHhhchhhHHHHHhCCCCC---CChhHHHHHHHHHHHHH
Q psy5435 113 YLYSKEQLLDRMCMTLGGRVSEEIFFGRITT---GAEDDLKKVTQSAYAQV 160 (245)
Q Consensus 113 ~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~---g~~~DL~~at~~a~~~v 160 (245)
+.++.+.+.+++...+. +..++++. +. ...+++++.+....+.+
T Consensus 76 t~~~~~~~~~~l~~~l~--ll~~~~~~--p~~~~f~~~~~~~ek~~v~~e~ 122 (431)
T 3cx5_A 76 QSYIVSSLPGSTDKSLD--FLNQSFIQ--QKANLLSSSNFEATKKSVLKQV 122 (431)
T ss_dssp EEEEEEECSTTHHHHHH--HHHHHHHT--CSTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEechhhHHHHHH--HHHHHHhC--cccccCCHHHHHHHHHHHHHHH
Confidence 66666666566666666 33334444 33 45566666655544433
No 17
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.37 E-value=1.1e-13 Score=138.46 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=68.6
Q ss_pred CCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceee---eeecccccee
Q psy5435 28 VNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY---YFSNASKGLG 103 (245)
Q Consensus 28 ~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~---tI~~rg~~lG 103 (245)
+..+.++..+|+|||+|+ .+++..+. ++.+|+++|+.+..|+||++|||+|+||++++..- .+..+..++.
T Consensus 33 ~~~~~~~~~~l~nGl~v~~~~~~~~~~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~ 107 (995)
T 2fge_A 33 CKSKAILFKHKKTGCEVMSVSNEDENK-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTF 107 (995)
T ss_dssp TTEEEEEEEETTTCCEEEEEECSCSSE-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEE
T ss_pred ccceEEEEEECCCCCEEEEEEcCCCcc-----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCC
Confidence 344566778999999999 77777765 37789999999999999999999999999974332 2222333445
Q ss_pred EEEEcCcchhhchHHHH-HHHHHHhhc
Q psy5435 104 YAQYLPREQYLYSKEQL-LDRMCMTLG 129 (245)
Q Consensus 104 ~~~~~~~e~~~~t~~~L-~~~l~~~L~ 129 (245)
.++++..|.+.|..... .+.+...|.
T Consensus 108 ~NA~T~~d~T~y~~~~~~~~~~~~~l~ 134 (995)
T 2fge_A 108 LNAFTYPDRTCYPVASTNTKDFYNLVD 134 (995)
T ss_dssp ECCEECSSEEEEEEEESSHHHHHHHHH
T ss_pred ceeeECCCceEEEEecCCHHHHHHHHH
Confidence 67777777776654321 234444444
No 18
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.36 E-value=4.6e-14 Score=124.79 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=81.0
Q ss_pred CEEEEecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecc--ccceeEEEEcCcchhhchHHH
Q psy5435 42 LRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNA--SKGLGYAQYLPREQYLYSKEQ 119 (245)
Q Consensus 42 l~v~~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~r--g~~lG~~~~~~~e~~~~t~~~ 119 (245)
|+|+.+++..|++++.+++++||++| ++.|+||+++||+|+||+++ ...++... ..++++++++..|.+.++.++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~-~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~ 77 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTR-SALKLVRESELLGGTFKSTLDREYITLKATF 77 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSS-CHHHHHHHHHHHTCEEEEEECSSCEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCC-CHHHHHHHHHHhCCeEEEEEccceEEEEEEe
Confidence 68888899999999999999999996 48999999999999999996 44444443 234557777778888777777
Q ss_pred HHHHHHHhhchhhHHHHHhCCCCCCChhHHH-HHHHHHHHHH
Q psy5435 120 LLDRMCMTLGGRVSEEIFFGRITTGAEDDLK-KVTQSAYAQV 160 (245)
Q Consensus 120 L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~-~at~~a~~~v 160 (245)
+.+++...|. +..+++++ +....++++ +.+....+.+
T Consensus 78 ~~~~l~~~l~--ll~d~~~~--p~f~~~~~~~~~k~~v~~e~ 115 (352)
T 3cx5_B 78 LKDDLPYYVN--ALADVLYK--TAFKPHELTESVLPAARYDY 115 (352)
T ss_dssp EGGGHHHHHH--HHHHHHHH--BCCCHHHHHHTHHHHHHHHH
T ss_pred chhhHHHHHH--HHHHHHhC--CCCCHHHHHHHHHHHHHHHH
Confidence 7777777776 33344444 445556666 5554444333
No 19
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.34 E-value=1.7e-13 Score=139.53 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=74.4
Q ss_pred ccCCCCCccEEEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceee---eeecccc
Q psy5435 25 EKSVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFY---YFSNASK 100 (245)
Q Consensus 25 ~~~~~~p~~~~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~---tI~~rg~ 100 (245)
.+.+..|.++...|+||++|+ ++++..+.+. ..+.+|++.|+.++.|+||+++||+|+||++++.+. .+..++.
T Consensus 79 ~p~~~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~sl 156 (1193)
T 3s5m_A 79 NEEFKMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTL 156 (1193)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCC
T ss_pred CCCccccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhcc
Confidence 456677889999999999999 7776655333 345678889999999999999999999999974221 3333334
Q ss_pred ceeEEEEcCcchhhchHHHHH-HHHHHhhc
Q psy5435 101 GLGYAQYLPREQYLYSKEQLL-DRMCMTLG 129 (245)
Q Consensus 101 ~lG~~~~~~~e~~~~t~~~L~-~~l~~~L~ 129 (245)
++..++++..|.+.|....+. +++..+|.
T Consensus 157 G~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~ 186 (1193)
T 3s5m_A 157 HTHLNAYTFNDRTVYMAGSMNNKDFFNIMG 186 (1193)
T ss_dssp EEEEEEEECSSEEEEEEEESSHHHHHHHHH
T ss_pred CceEEeEEcCCeEEEEEEecCHHHHHHHHH
Confidence 455677778887776665443 55555555
No 20
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.23 E-value=4.1e-12 Score=114.34 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=57.6
Q ss_pred EEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeecccc---ceeEEEEcCcc
Q psy5435 36 TSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASK---GLGYAQYLPRE 111 (245)
Q Consensus 36 ~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~---~lG~~~~~~~e 111 (245)
.+|+||++|+ .+++..|.+.+.+++++|+.+|+ .|++|+++||+++||++++...++..... ++.+++++..|
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 7899999999 77878899999999999998865 69999999999999998645444444332 44455555555
Q ss_pred h
Q psy5435 112 Q 112 (245)
Q Consensus 112 ~ 112 (245)
.
T Consensus 83 ~ 83 (425)
T 3d3y_A 83 G 83 (425)
T ss_dssp T
T ss_pred C
Confidence 4
No 21
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=97.71 E-value=8.9e-06 Score=80.64 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=79.8
Q ss_pred cEEEEcCCCCEEE-EecCC--C-CeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEc
Q psy5435 33 TQVTSIDNGLRVA-TEDSG--A-PTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYL 108 (245)
Q Consensus 33 ~~~~~L~NGl~v~-~~~~~--~-p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~ 108 (245)
+...+|+||++|+ .+++. . |.+.+.+.+.+|...+.+.+.|+++++..++..|+..+ +......+++++...
T Consensus 500 p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~----~~~~~l~G~~~~~~~ 575 (939)
T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL----SNQASVGGISFSTNA 575 (939)
T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTEEEEEEE
T ss_pred CEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH----hhHHHHcCcEEEEee
Confidence 3567899999999 66653 3 49999999999999999999999999999999887653 122222334444444
Q ss_pred CcchhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy5435 109 PREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGM 165 (245)
Q Consensus 109 ~~e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm 165 (245)
.+.+.++.+.+.+++..++. .+.+.+ +. +....+.|++.++.....+.....
T Consensus 576 -~~g~~~~~~g~~~~l~~~l~-ll~~~l-~~--p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 576 -NNGLMVNANGYTQRLPQLFQ-ALLEGY-FS--YTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp -SSEEEEEEEEESSSHHHHHH-HHHHHH-HH--CCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred -CCcEEEEEEcccHhHHHHHH-HHHHHH-hC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 44333333333334444444 233322 22 334456788887777766666543
No 22
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=96.84 E-value=0.00093 Score=66.68 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=82.4
Q ss_pred EEEcCCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccc-cccccceeeeeecc----ccceeE-E--
Q psy5435 35 VTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK-TRENGFYFYYFSNA----SKGLGY-A-- 105 (245)
Q Consensus 35 ~~~L~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~-gt~~~~~~~tI~~r----g~~lG~-~-- 105 (245)
...++||++|+ .+++..|.+.+.+++++|+. +....++++++.+++.+ ||+++ ...++... .+++++ +
T Consensus 555 ~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~-s~~el~~~l~~~~ggl~~~~~~ 631 (995)
T 2fge_A 555 EVGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDL-TFVQLNQLIGRKTGGISVYPLT 631 (995)
T ss_dssp EEEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSS-CHHHHHHHHHHHSSEEEEEEEE
T ss_pred eeeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhcCceEeeccc
Confidence 34558999999 77788899999999999987 45678899999998886 99886 44444443 222333 2
Q ss_pred EEcCc-----chhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChh-HHHHHHHHHHHHHHHh
Q psy5435 106 QYLPR-----EQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAED-DLKKVTQSAYAQVAHF 163 (245)
Q Consensus 106 ~~~~~-----e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~-DL~~at~~a~~~v~~~ 163 (245)
..... +.+.++.+++.+++..++. +..++++. +....+ .|++.+......+...
T Consensus 632 ~~~~~~~~~~~~~~i~~~~l~~~l~~~l~--ll~e~l~~--p~f~~~~~~~~~~~~~~~~l~~~ 691 (995)
T 2fge_A 632 SSVRGKDEPCSKIIVRGKSMAGRADDLFN--LMNCLLQE--VQFTDQQRFKQFVSQSRARMENR 691 (995)
T ss_dssp EEETTEEEEEEEEEEEEEEEGGGHHHHHH--HHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccccceEEEEEEEehhhHHHHHH--HHHHHHHc--CCCCcHHHHHHHHHHHHHHHHHh
Confidence 24333 6677777777777887777 44445544 334445 6777666655555443
No 23
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=96.11 E-value=0.0017 Score=64.70 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=81.8
Q ss_pred EEEEcCCCCEEE-EecCC--CCeEEEEEEEecccccccccccchhhhccccccccccccceeeeeeccccceeEEEEcCc
Q psy5435 34 QVTSIDNGLRVA-TEDSG--APTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKGLGYAQYLPR 110 (245)
Q Consensus 34 ~~~~L~NGl~v~-~~~~~--~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~gt~~~~~~~tI~~rg~~lG~~~~~~~ 110 (245)
...+++||++|+ .+++. .|...+.+.+..|...+++.+.++++++..++.++- ...++.....|.+++.....
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~----~~~~~~~~l~G~~~~~~~~~ 595 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSL----NEYAYAAELAGLSYDLQNTI 595 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTEEEEEEEET
T ss_pred eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH----HHhhhHHHhCCeEEEEEEcC
Confidence 557789999999 66654 789999999999988888889999999999887542 22222223334555555555
Q ss_pred chhhchHHHHHHHHHHhhchhhHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy5435 111 EQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGM 165 (245)
Q Consensus 111 e~~~~t~~~L~~~l~~~L~g~~aEel~~~~~~~g~~~DL~~at~~a~~~v~~~Gm 165 (245)
+.+.++.+.+.+++..++. +..+++.. +....+.|++.+......+.....
T Consensus 596 ~~~~~~~~g~~~~l~~~l~--ll~~~l~~--p~~~~~~f~~~k~~~~~~~~~~~~ 646 (990)
T 3cww_A 596 YGMYLSVKGYNDKQPILLK--KIIEKMAT--FEIDEARFEIIKEAYMRSLNNFRA 646 (990)
T ss_dssp TEEEEEEEEESTTHHHHHH--HHHHHHHT--CCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred CeEEEEEEeccHhHHHHHH--HHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhh
Confidence 5565555555556666666 33344443 333456777777776666655433
No 24
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=86.40 E-value=0.37 Score=49.32 Aligned_cols=96 Identities=6% Similarity=-0.015 Sum_probs=68.2
Q ss_pred CCCCEEE-EecCCCCeEEEEEEEecccccccccccchhhhccccccc-cccccceeeeeecc----ccceeEEEEc-C--
Q psy5435 39 DNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK-TRENGFYFYYFSNA----SKGLGYAQYL-P-- 109 (245)
Q Consensus 39 ~NGl~v~-~~~~~~p~v~~~~~~~aGs~~E~~g~aGvAhll~~~~~~-gt~~~~~~~tI~~r----g~~lG~~~~~-~-- 109 (245)
.||++|+ .+.+..+++.+.+.++.|... .+..+...++..++.+ ||+++ +..++..+ +++.++.... +
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~-sy~el~~~i~~~tGGis~s~~~~~~~ 800 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKR-SSEDFVILREKNIGSMSANVALYSKD 800 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSS-CHHHHHHHHHHHCSEEEEEEEEECCC
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCceEEEeeeeccc
Confidence 4899998 777888999999999999755 4466777777777755 99996 55555544 3444444432 1
Q ss_pred -----------cchhhchHHHHHHHHHHhhchhhHHHHHhC
Q psy5435 110 -----------REQYLYSKEQLLDRMCMTLGGRVSEEIFFG 139 (245)
Q Consensus 110 -----------~e~~~~t~~~L~~~l~~~L~g~~aEel~~~ 139 (245)
.+.+.++..+|.+++..++. +..+++..
T Consensus 801 ~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~--Ll~eiL~~ 839 (1193)
T 3s5m_A 801 DHLNVTDKYNAQALFNLEMHVLSHKCNDALN--IALEAVKE 839 (1193)
T ss_dssp BTTBCCCTTCCEEEEEEEEEEEGGGHHHHHH--HHHHHHHS
T ss_pred ccccccccccccceEEEEEEEhhhcHHHHHH--HHHHHHhC
Confidence 23356777888888888888 77777776
No 25
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=25.25 E-value=1.8e+02 Score=20.56 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCCCccEEEEcC-CCCEEEEecCCCCeEEEEEEEe
Q psy5435 28 VNVPSTQVTSID-NGLRVATEDSGAPTATVGIWVD 61 (245)
Q Consensus 28 ~~~p~~~~~~L~-NGl~v~~~~~~~p~v~~~~~~~ 61 (245)
..+|.+....|. .|++|.++.++...+.+...++
T Consensus 3 y~vP~~~ve~l~PkG~~vSip~pGi~lfafh~~iN 37 (106)
T 3aqy_A 3 YVVPSAKLEAIYPKGLRVSIPDDGFSLFAFHGKLN 37 (106)
T ss_dssp -CCCCCEEEEESSSCEEEEEECSSCSEEEEEEEES
T ss_pred cCCCCcEEEEeCCCcEEEEEeCCCcEEEEEEEEec
Confidence 355666665665 9999996677778888887774
No 26
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=22.28 E-value=1.2e+02 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCCccEEEEc-CCCCEEEEecC-CCCeEEEEEEE
Q psy5435 29 NVPSTQVTSI-DNGLRVATEDS-GAPTATVGIWV 60 (245)
Q Consensus 29 ~~p~~~~~~L-~NGl~v~~~~~-~~p~v~~~~~~ 60 (245)
.+|.+....| |+|++|.+++. +...+.+...+
T Consensus 2 ~vP~~~ve~l~P~G~rvsipD~pgi~lf~fh~~i 35 (107)
T 3ie4_A 2 EVPKAKIDVFYPKGFEVSIPDEEGITLFAFHGKL 35 (107)
T ss_dssp CCCCCEEEECSSSCEEEEEECCTTEEEEEEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEcCCCCCEEEEEEEEe
Confidence 3466665566 59999998874 34455555544
Done!