RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5435
(245 letters)
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 212
Score = 111 bits (279), Expect = 5e-30
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFG--RITTGAEDDLKKVTQSAYA 158
LGY Q+LP E + LY+K QLL R+ + LGGR +EE+ FG +TTGA +DL++ T+ A
Sbjct: 63 LGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIARQ 122
Query: 159 QVAHFGMNEKVG 170
V FGM++K+G
Sbjct: 123 MVTEFGMSDKLG 134
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 101 bits (254), Expect = 1e-24
Identities = 37/70 (52%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY Q+LP E +YLY+K QLL ++ + LGGR +EEI FG +TTGA +D+K+ T A A V
Sbjct: 346 LGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMV 405
Query: 161 AHFGMNEKVG 170
+GM++K+G
Sbjct: 406 TEWGMSDKLG 415
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 81.6 bits (202), Expect = 9e-18
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 102 LGYAQYLP-REQYLYSKEQLLDRMCMTLGGRVSEEIFFGR-ITTGAEDDLKKVTQSAYAQ 159
LGY +LP ++YL SKE+LLDR+ + LGGR +EE+ FG ITTGA +DL+K T A A
Sbjct: 441 LGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAM 500
Query: 160 VAHFGMNEKVG 170
V +GM+ K+G
Sbjct: 501 VTEYGMSAKLG 511
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 74.7 bits (184), Expect = 8e-17
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 43 RVATEDSG-APTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
RVA+E A T+ VG+W+DAGSRYE D NNG+AHFLEHMAFK +
Sbjct: 1 RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKK 47
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General
function prediction only].
Length = 438
Score = 73.6 bits (181), Expect = 4e-15
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 17 RATQASVAEKSVNVPSTQVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVA 75
+P QV ++ NGLRV T + APT ++ +WV AGSR E G+A
Sbjct: 1 LLGLLLQPAALPALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIA 60
Query: 76 HFLEHMAFK 84
HFLEHMAFK
Sbjct: 61 HFLEHMAFK 69
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 61.2 bits (149), Expect = 7e-11
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 100 KGLGYAQYLP-REQYLYSKEQLLDRMCMTLGGRVSEEIFFG--RITTGAEDDLKKVTQSA 156
KGL + + P +Q L S+ Q+L R+ LGGR +EE+ FG +TTGA +DL++VT A
Sbjct: 473 KGLTW--FTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLA 530
Query: 157 YAQVAHFGMN 166
V FGM+
Sbjct: 531 RQMVTRFGMS 540
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 48.5 bits (115), Expect = 1e-06
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 100 KGLGYAQYLPREQYLYSKEQLLDRMCMTL-GGRVSEEIFFG--RITTGAEDDLKKVTQSA 156
+ LG +LP + + Q L+ TL GGR++EEI +G ++TGA +D+K T A
Sbjct: 441 RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLA 500
Query: 157 YAQVAHFGMNEKVG 170
V +G +EK+G
Sbjct: 501 RNMVTQWGFSEKLG 514
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification,
protein turnover, chaperones].
Length = 937
Score = 39.7 bits (93), Expect = 0.001
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 31 PSTQVTSIDNGLRV-ATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAF 83
+ + NGLR D A ++ + V GS + + G+AHFLEHM F
Sbjct: 22 RKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLF 75
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and
is thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 39.5 bits (92), Expect = 0.001
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 40 NGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAF 83
NGLRV A A + V AGS E A G+AHFLEH+ F
Sbjct: 7 NGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLF 51
>gnl|CDD|193414 pfam12941, HCV_NS5a_C, HCV NS5a protein C-terminal region. This is
a family of proteins found in the hepatitis C virus.
This family contains the C-terminal region of the NS5A
protein. CC The molecular function of the non-structural
5a protein is uncertain. The NS5a protein is
phosphorylated when expressed in mammalian cells. It is
thought to interact with the ds RNA dependent
(interferon inducible) kinase PKR.
Length = 244
Score = 30.1 bits (68), Expect = 0.92
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGS 64
A +AEKS PS D+GL + S P DAGS
Sbjct: 168 AELAEKSFPQPSPSSDESDSGLSTPSSTSSEPPGEDDDASDAGS 211
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 29.9 bits (68), Expect = 1.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 34 QVTSIDNGLRVA-TEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHM 81
Q +DNG+ V D A + + + GS + DA G+AH+LEHM
Sbjct: 45 QAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHM 93
>gnl|CDD|238440 cd00864, PI3Ka, Phosphoinositide 3-kinase family, accessory domain
(PIK domain); PIK domain is conserved in PI3 and
PI4-kinases. Its role is unclear, but it has been
suggested to be involved in substrate presentation.
Phosphoinositide 3-kinases play an important role in a
variety of fundamental cellular processes and can be
divided into three main classes, defined by their
substrate specificity and domain architecture.
Length = 152
Score = 28.7 bits (65), Expect = 1.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 65 RYETDANNGVAHFLEHMAFKTRENGFYFYYF 95
+YE ++ +A FL A K++ G Y+
Sbjct: 115 KYEPYLDSYLARFLLERALKSQRLGHQLYWN 145
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 28.6 bits (64), Expect = 2.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 69 DANNGVAHFLEHMAFKTRENGFY 91
DA NG +HF ++A + NGF
Sbjct: 246 DAANGRSHFDMNVARRAIANGFL 268
>gnl|CDD|214462 MTH00217, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 482
Score = 28.9 bits (65), Expect = 3.0
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 136 IFFGRITTGAEDDLKKVTQSAYAQVAHFGM 165
I +G +TT + DLK++ AY+ VAH G+
Sbjct: 283 IIYGSLTTCRQVDLKRII--AYSSVAHMGL 310
>gnl|CDD|129679 TIGR00591, phr2, photolyase PhrII. All proteins in this family for
which functions are known are DNA-photolyases used for
the direct repair of UV irradiation induced DNA damage.
Some repair 6-4 photoproducts while others repair
cyclobutane pyrimidine dimers. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 454
Score = 28.6 bits (64), Expect = 3.6
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 65 RYETDANNGVAHFLEHMAFKTRENGFYFYYF---SNASKGLGYAQYL-------PREQYL 114
R +A V F E + + RE F ++ ++ G + + ++L
Sbjct: 279 RARGNAGESVEFFEEELVVR-RELADNFCFYNPYYDSLCGAYWWARTTLDDHAKDKREHL 337
Query: 115 YSKEQL 120
YS EQL
Sbjct: 338 YSLEQL 343
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 28.1 bits (63), Expect = 5.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 70 ANNGVAHFLEHMAF 83
+ GVAH LEH
Sbjct: 55 DSTGVAHILEHTVL 68
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28. Glycosyl
hydrolase family 28 includes polygalacturonase
EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A),
EC:3.2.1.-. These enzymes is important in cell wall
metabolism.
Length = 325
Score = 27.7 bits (62), Expect = 5.8
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 17 RATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAH 76
R+ + +V V V + VT DNG+R+ T T + G +E + VA+
Sbjct: 196 RSDENTV--SGVTVKNCTVTGSDNGVRIKTWPGATGTVS-------GITFENIEMSNVAY 246
>gnl|CDD|112235 pfam03410, Peptidase_M44, Protein G1. Protein G1, named after
the vaccinia virus protein, is a glycoprotein expressed
by many Poxviridae.
Length = 590
Score = 27.5 bits (61), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 38 IDNGLRVATEDSGAPTATVGIWVDAGSRYETDANN--GVAHFLEHM 81
++NG+RV +G+ + +E D G+AH LEH+
Sbjct: 4 LENGVRVFINPGMGKDIYIGL---SNFGFENDIPEILGIAHLLEHI 46
>gnl|CDD|204173 pfam09231, RDV-p3, Rice dwarf virus p3. Members of this family are
core structural proteins found in the double-stranded
RNA virus Phytoreovirus. They are large proteins without
apparent domain division, with a number of all-alpha
regions and one all beta domain near the C-terminal end.
Length = 967
Score = 27.6 bits (61), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 3 FFSYFEDILILKRCRATQASVAEKSVNVPS 32
FF+ EDILIL+ RA +++ N P+
Sbjct: 614 FFAGGEDILILQLIRAIWDTLSNHLGNNPA 643
>gnl|CDD|184086 PRK13493, PRK13493, chemoreceptor glutamine deamidase CheD;
Provisional.
Length = 213
Score = 26.8 bits (59), Expect = 9.4
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 83 FKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVS 133
+ G Y Y F++ S + + +P Y S ++++ LG VS
Sbjct: 10 IQEEAKGQY-YRFNHPSDHRHWVKVMPGGVYATSDQEII---HTGLGSCVS 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,203,542
Number of extensions: 1132543
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 24
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)