RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5435
(245 letters)
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 114 bits (287), Expect = 1e-29
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 81 MAFK 84
+AFK
Sbjct: 62 LAFK 65
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 113 bits (285), Expect = 2e-29
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 10 ILILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETD 69
+ + + +AT+A + + T + NGL +A+ ++ AP + +G+++ AGSRYE
Sbjct: 2 LKVAPKVKATEAPAGVPP-HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENS 60
Query: 70 ANNGVAHFLEHMAFKTREN 88
N G +H L + T +
Sbjct: 61 NNLGTSHLLRLASSLTTKG 79
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit;
hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 107 bits (270), Expect = 3e-27
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 31 PSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
+ +++S+ NGL+VAT ++ + +G+++DAGSR+E G H L+ +AFK
Sbjct: 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFK 57
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 102 bits (257), Expect = 1e-25
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 34 QVTSIDNGLRVATE-DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTREN 88
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++ +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS 57
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 101 bits (253), Expect = 6e-25
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 27 SVNVPSTQVTSIDNGLRVATED-SGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
+ +P T+ + + NGL +ATE +ATVGI+VDAGSR E NNG AHFLEH+AFK
Sbjct: 1 ASQIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFK 59
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 99.5 bits (249), Expect = 1e-24
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 34 QVTSIDNGLRVATE-DSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
+ + NGLRV E GA + +G +V G+R ET +GV+HFLEHM FK
Sbjct: 3 REAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFK 54
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 96.5 bits (241), Expect = 2e-24
Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYA 158
LG Q LP E +++Y K+ L +++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY
Sbjct: 51 LGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYR 110
Query: 159 QVAHFGMNEKVG 170
V+ +GM++KVG
Sbjct: 111 MVSMWGMSDKVG 122
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 98.8 bits (247), Expect = 3e-24
Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 34 QVTSIDNGLRVATED-SGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
++DNG+R+ TE S + ++GIWV GSRYE+ NG++HFLEHM FK
Sbjct: 3 NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 95.3 bits (238), Expect = 7e-23
Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 102 LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQV 160
LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+GA +D+++ T+ A V
Sbjct: 308 LGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMV 367
Query: 161 AHFGMNEKVG 170
GM+E++G
Sbjct: 368 CQLGMSEELG 377
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 93.8 bits (234), Expect = 3e-22
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 102 LGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161
LG+ + +S+++LLD++ + L GR +EEI F +TTGAE+D ++ T+ A +
Sbjct: 322 LGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMIT 381
Query: 162 HFGMNEKVG 170
+GM+ + G
Sbjct: 382 EWGMHPEFG 390
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 86.2 bits (214), Expect = 6e-20
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 42 LRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKT 85
L V+ D+ +T+ + V GSRY T +GVAH L F+
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQN 42
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid,
HYDR; HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 71.8 bits (176), Expect = 1e-14
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 18 ATQASVAEKSVNVPSTQVTSIDNGLRV---ATEDSGAPTATVGIWVDAGSRYETDANNGV 74
A+ AE P+ Q +DNG AT + + + V+ GS E G
Sbjct: 11 ASNNVQAEALQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGF 70
Query: 75 AHFLEHMAFKTREN 88
AH L +A + +
Sbjct: 71 AHLLPRLALMSSAS 84
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 66.1 bits (162), Expect = 7e-13
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 34 QVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
+ + +G +V E+ P V + DAGS E GVA +
Sbjct: 5 EHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDA 56
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 65.4 bits (160), Expect = 2e-12
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 30 VPSTQVTSIDNGLRV-ATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 58.7 bits (141), Expect = 4e-10
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 32 STQVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK-----T 85
Q +DNG+ V D A + + V GS + +A G+AH+LEHM+
Sbjct: 20 QYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP 79
Query: 86 RENGFYFYY-----FSNAS 99
+ + Y NAS
Sbjct: 80 QADSLAEYLKMHGGSHNAS 98
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16
family, PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 57.7 bits (140), Expect = 6e-10
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 27 SVNVPSTQVTSIDNGLRV-ATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
S + Q S G +V E P + + AGS + + GVA M +
Sbjct: 8 SHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGN-APGVALLTNAMLNE 65
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 54.8 bits (131), Expect = 7e-09
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 39 DNGLRV-ATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK-----TRENGFYF 92
NG++V D ++ + V GS + G++HFL+HM F +EN +
Sbjct: 41 ANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQ 100
Query: 93 YY-----FSNAS 99
+ SNA
Sbjct: 101 FLSEHAGSSNAF 112
>3d3y_A Uncharacterized protein; APC29635, conserved protein,
enterococcus faecalis V583, STR genomics, PSI-2,
protein structure initiative; 1.95A {Enterococcus
faecalis}
Length = 425
Score = 52.7 bits (127), Expect = 3e-08
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 36 TSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK 84
+ G+ + T + + + +ET L +
Sbjct: 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMET 52
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 44.5 bits (104), Expect = 2e-05
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 4/63 (6%)
Query: 26 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKT 85
+ G V + + G+ R + G+ H L+H
Sbjct: 31 SECKSKAILFKHKKTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCG 86
Query: 86 REN 88
Sbjct: 87 SRK 89
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 37.7 bits (86), Expect = 0.003
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 26 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKT 85
+ + T +V + + P + T + G+ H LEH
Sbjct: 80 EEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQ-AFAFYVKTLTHSGKGIPHILEHSVLSG 138
Query: 86 RENGFYFYYFSNASKGLGY 104
+N Y KG +
Sbjct: 139 SKNYNYKNSIGLLEKGTLH 157
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.004
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 25 EKSVNVPSTQVTSIDNGLRVATEDSGAPT----ATV 56
EK + + L++ +DS AP AT+
Sbjct: 18 EKQ------ALKKLQASLKLYADDS-APALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.14
Identities = 46/333 (13%), Positives = 80/333 (24%), Gaps = 154/333 (46%)
Query: 11 LILKRCRATQASVAEKSVNVPS------TQVTSIDNGLRVATED--SGAPTATVGIWVDA 62
L L + S+ E + VP+ +Q L+ E P T G D
Sbjct: 9 LTL-----SHGSL-EHVLLVPTASFFIASQ-------LQ---EQFNKILPEPTEGFAADD 52
Query: 63 GSRYETDANNG-VAHFLEHMAFKTRENGF------------YF----------------- 92
E V FL +++ + F
Sbjct: 53 ----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 93 -----------------YY------------------FSNASKGLG--YAQ--------- 106
Y F +G A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 107 YLP--REQY-LYS--KEQLLDRMCMTLGGRVSEEI----FFGR-----------ITTGAE 146
Y R+ Y Y L+ TL + + F + T +
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 147 DDLKKVTQS----AYAQVAHFGMNEKV-GKSESKLVDH--------REVLVQQVLA---- 189
D L + S Q+AH+ + K+ G + +L + + ++ +A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 190 --------LEGLDVL---G-RSQDGVAQRSALE 210
+ + VL G R + ++L
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYE-AYPNTSLP 320
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 509
Score = 28.4 bits (64), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 136 IFFGRITTGAEDDLKKVTQSAYAQVAHFG 164
IF+G A+ D+K++ AY V+H G
Sbjct: 298 IFYGAWMAFAQTDIKRLI--AYTSVSHMG 324
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 27.5 bits (62), Expect = 4.9
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 114 LYSKEQLLDRMCMTL--GGRVSEEIFFGRITTGAEDDLK-KVTQSAYAQVA--------- 161
LY L + T ++ T AE + +V SAY Q A
Sbjct: 231 LYIHGDCLGEINPTYVGWRSITYGAKGEP-TGWAEGGKRFEVATSAYPQYAGLLAALQLH 289
Query: 162 -HFGMNEKVGKSESKLVDHREVLVQQVLALEGLDVLGRSQD 201
G E+ ++ + + L + + L + L S
Sbjct: 290 QRQGTAEERYQAICQRSEF---LWRGLNQLPHVHCLATSAP 327
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold,
beta-sandwich, xylan degradati hydrolase; HET: XYP;
1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A*
3c7g_A*
Length = 487
Score = 27.0 bits (59), Expect = 5.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 88 NGFYFYYFSNASKGLGYA 105
+F YF+N+ G+G
Sbjct: 113 KDKFFLYFANSGGGIGVL 130
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP:
a.205.1.1 PDB: 2k5b_B 2w0g_A
Length = 265
Score = 26.7 bits (58), Expect = 7.9
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 146 EDDLKKVTQSAYAQVAHFGMNEKVGKSESKLVDHREVLVQQ 186
E K + Q+ HFGM + S+ L D+ ++ ++
Sbjct: 32 EQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEE 72
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 26.4 bits (59), Expect = 9.9
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 66 YETDANN--GVAHFLEHMAFKTRENGF 90
+ T +N+ GVA+ ++ + GF
Sbjct: 256 WVTRSNDEQGVAYMMKEYFRMQQRKGF 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,663,783
Number of extensions: 216881
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 37
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)