RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5435
(245 letters)
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 86.6 bits (213), Expect = 3e-21
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 21 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH 80
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+W+DAGSRYE++ NNG +F+EH
Sbjct: 1 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 60
Query: 81 MA----FKTRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEI 136
+A N S + Y+ Y+ + + L + L V
Sbjct: 61 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 120
Query: 137 FF 138
Sbjct: 121 LE 122
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 77.3 bits (189), Expect = 7e-18
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 31 PSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGF 90
+ T + NGL +A+ ++ AP + +G+++ AGSRYE N G +H L + T +
Sbjct: 6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGAS 65
Query: 91 YFYYF 95
F
Sbjct: 66 SFKIT 70
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 76.3 bits (186), Expect = 2e-17
Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 31 PSTQVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENG 89
P T+ + + NGL +AT +ATVGI+VDAGSR E NNG AHFLEH+AFK +N
Sbjct: 1 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR 60
Query: 90 FYFYYF 95
Sbjct: 61 PQQGIE 66
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 74.7 bits (182), Expect = 6e-17
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 34 QVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEH-MAFKTRENGFYF 92
+++S+ NGL+VAT ++ + +G+++DAGSR+E G H L+ T
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 93 YYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCM 126
+ G Y RE +Y +
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGK 100
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 213
Score = 72.7 bits (177), Expect = 4e-16
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 34 QVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYF 92
+VT + NG+ VAT + A TA+VG+ +G+ E NNGV++ +++ +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAA 61
Query: 93 YY 94
Sbjct: 62 KE 63
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 70.5 bits (171), Expect = 2e-15
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 2/128 (1%)
Query: 42 LRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYFYYFSNASKG 101
L V+ D+ +T+ + V GSRY T +GVAH L F+ +
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELL 58
Query: 102 LGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVA 161
G + +Y+ K L +++ ++ + VA
Sbjct: 59 GGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVA 118
Query: 162 HFGMNEKV 169
+
Sbjct: 119 EQCPVKSA 126
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 65.4 bits (159), Expect = 8e-14
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 96 SNASKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQ 154
K LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+GA +D+++ T+
Sbjct: 37 PRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATE 96
Query: 155 SAYAQVAHFGMNEKVG 170
A V GM+E++G
Sbjct: 97 IARNMVCQLGMSEELG 112
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 65.2 bits (157), Expect = 2e-13
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 34 QVTSIDNGLRVAT-EDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFKTRENGFYF 92
Q +DNG+ V D A + + V GS + +A G+AH+LEHM+ +
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQA 81
Query: 93 YYFSNASKGLG 103
+ K G
Sbjct: 82 DSLAEYLKMHG 92
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 44.4 bits (104), Expect = 3e-06
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 104 YAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYAQVA 161
Q ++++Y K+ L +++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY V+
Sbjct: 45 TQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVS 104
Query: 162 HFGMNEK 168
+GM++K
Sbjct: 105 MWGMSDK 111
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 43.3 bits (101), Expect = 1e-05
Identities = 17/151 (11%), Positives = 36/151 (23%), Gaps = 7/151 (4%)
Query: 26 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWVDAGSRYETDANNGVAHFLEHMAFK- 84
+ G V + + G+ R + G+ H L+H
Sbjct: 17 SECKSKAILFKHKKTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLCG 72
Query: 85 --TRENGFYFYYFSNASKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRIT 142
F S + ++ Y + L + +FF +
Sbjct: 73 SRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCV 132
Query: 143 TGAEDDLKKVTQSAYAQVAHFGMNEKVGKSE 173
A ++ + + V +E
Sbjct: 133 DDAHTFQQEGWHYELNDPSEDISYKGVVFNE 163
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.5 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 3 FFSYFEDILILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATE 47
FF+ EDILIL+ RA +++ K P + ++ +V E
Sbjct: 613 FFAGGEDILILQLIRAVYDTLSNKLGRNP-ADIFHLEEVFKVIEE 656
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 866,739
Number of extensions: 37240
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 15
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)