RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5437
(250 letters)
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 148 bits (375), Expect = 2e-44
Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 30/206 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ GLG A+ G L R++ KL + +
Sbjct: 6 ITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVT--------------------NCL 45
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ D + + ++L +V++ G Y ++
Sbjct: 46 SNNVGY----RARDLASHQEVEQLFEQLDS-IPSTVVHSAGSGYF--GLLQEQDPEQ--I 96
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
++ N+ + +++ + ++ + + VV I STAA P S Y A K V
Sbjct: 97 QTLIENNLSSAINVLRELVKRYKD-QPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIE 155
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNMS 206
++ E K + + V PG +AT
Sbjct: 156 SVRLELKGKPMKIIAVYPGGMATEFW 181
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 137 bits (348), Expect = 6e-40
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG++ G+G A AEG AK G A +VL++R ++L A +
Sbjct: 12 ITGSSSGIGLAIAEGFAKEG----------------AH----IVLVARQVDRLHEAARSL 51
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
++K+ V + D P + V G + ILVNN G E + ++
Sbjct: 52 KEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGAD--ILVNNAGT--GSNETIMEAADE 107
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + V+ + + + ++P M + G +++ +S A+ P +Y +K +
Sbjct: 108 K--WQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALM 165
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
FS L +E K I V C+ PG + T
Sbjct: 166 MFSKTLATEVIKDNIRVNCINPGLILTPD 194
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 136 bits (346), Expect = 1e-39
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 32/212 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G E LA LG A V SR +++L++ +
Sbjct: 14 VTGGSRGIGYGIVEELASLG----------------A----SVYTCSRNQKELNDCLTQW 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTG-IEAGILVNNVGYSYPYPERFLAVPE 115
R K + V D + ++ V G + ILVNN G
Sbjct: 54 RSK-GFKVEASVCDLSSRSERQELMNTVANHFHGKLN--ILVNNAGIVIYKE--AKDYTV 108
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++ Y IM N + + P + +G VV ISS + + P +VYGA+K +
Sbjct: 109 ED--YSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAM 166
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + L E+ K I V V PG +AT++ +
Sbjct: 167 DQLTRCLAFEWAKDNIRVNGVGPGVIATSLVE 198
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 136 bits (345), Expect = 1e-39
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 29/225 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G G+A A LA+L G +++ +R++ L + E+
Sbjct: 11 LTGASRGFGRALAPQLARLLSP-----------------GSVMLVSARSESMLRQLKEEL 53
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEK--ELTGIEAGILVNNVGYSYPYPERFLAV 113
+ + + AD ++ + V + G++ +L+NN + FL V
Sbjct: 54 GAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNV 113
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQR--KGVVVNISSTAALIPSPMLSVYGAS 171
+ +N N+ ++L + + + VVNISS AL P +Y A
Sbjct: 114 NDLA-EVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVP 216
K L +E + + V PG + +M ++ + + P
Sbjct: 173 KAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDP 215
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 136 bits (345), Expect = 2e-39
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 32/212 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A E LA LG A+ V SR +++LD
Sbjct: 26 VTGGSKGIGYAIVEELAGLG----------------AR----VYTCSRNEKELDECLEIW 65
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTG-IEAGILVNNVGYSYPYPERFLAVPE 115
R+K ++ + V D K+ V G + ILVNN G E
Sbjct: 66 REK-GLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLN--ILVNNAGVVIHKE--AKDFTE 120
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K+ Y+ IM N + QI P + + G V+ +SS A P +S+Y ASK +
Sbjct: 121 KD--YNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAI 178
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
++ + L E+ K I V V PG + T + +
Sbjct: 179 NQMTKSLACEWAKDNIRVNSVAPGVILTPLVE 210
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 133 bits (338), Expect = 3e-38
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 35/227 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+ A LAK+G A VV+ +R+KE L V +
Sbjct: 33 VTGASKGIGREMAYHLAKMG----------------AH----VVVTARSKETLQKVVSHC 72
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ I D + A K + G++ +L+ N + +
Sbjct: 73 LELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLD--MLILNHITNT----SLNLFHDD 126
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
M N ++ + + +P + +Q G +V +SS A + PM++ Y ASK +
Sbjct: 127 IHHVRKSMEVNFLSYVVLTVAALPML-KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD 185
Query: 177 KFSTDLQSEY--KKHGIIVQCVMPGYVATNMSK--IKKSSWMVPSPA 219
F + ++ EY + + + + G + T + + M +P
Sbjct: 186 GFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPK 232
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 131 bits (331), Expect = 6e-38
Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 38/205 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGAT GLG A+A L G D++L R L +A E+
Sbjct: 5 ITGATGGLGGAFARALK----------------------GHDLLLSGRRAGALAELAREV 42
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ + AD D + +E ++ +LV+ VG +
Sbjct: 43 GAR------ALPADLADELEAKALLEEAGPLD--LLVHAVGKAGRAS--VREAGRDL--V 90
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
++ +++T V+ H Q+ V + + P + Y A+K + +
Sbjct: 91 EEMLAAHLLT----AAFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLE 146
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNM 205
+ E + G+ + V VAT +
Sbjct: 147 AARKELLREGVHLVLVRLPAVATGL 171
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 130 bits (329), Expect = 5e-37
Identities = 55/237 (23%), Positives = 84/237 (35%), Gaps = 35/237 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+G+ A AKL +VL D K L+ AA+
Sbjct: 36 ITGAGHGIGRLTAYEFAKLKSKLVL-------WD-------------INKHGLEETAAKC 75
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ V D ++ V+ E+ + ILVNN G Y A +
Sbjct: 76 K-GLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVS--ILVNNAGVVYT--SDLFATQDP 130
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ NV+ + +P M + G +V ++S A + P L Y +SK
Sbjct: 131 Q--IEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAV 188
Query: 177 KFSTDLQSE---YKKHGIIVQCVMPGYVATNMSKIKKSSWMVP-SPATFVDSALKTI 229
F L E + G+ C+ P +V T K +S P V+ + I
Sbjct: 189 GFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSLGPTLEPEEVVNRLMHGI 245
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 128 bits (325), Expect = 1e-36
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G A GLA G VVLI+R+K+ L+ + EI
Sbjct: 12 ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVH--------------------DEI 51
Query: 61 RDKYKVDTKVIV--ADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
K + IV D TD + ++ ++ ILVN ++
Sbjct: 52 MRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVD--ILVNAAAMF-----MDGSLS 104
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLF 174
E + IM NVI + + V M Q+ G + N++S AA +YG++K
Sbjct: 105 EPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFA 164
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + L E GI V + PG+V T+M+K
Sbjct: 165 LLGLAESLYRELAPLGIRVTTLCPGWVNTDMAK 197
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 129 bits (326), Expect = 1e-36
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+T + GLG A A LA+ G ++L SR +EKL+ A+ I
Sbjct: 12 VTAGSSGLGFASALELARNGARLLLFSRNREKLEA--------------------AASRI 51
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
++ D +P ++F +L G + ILV + G P P RF+ +
Sbjct: 52 ASLVSGAQVDIVAGDIREPGDIDRLFEKAR-DLGGAD--ILVYSTGG--PRPGRFMELGV 106
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++ + + + + + MVE+ G +V I S L P L++ +L V
Sbjct: 107 ED--WDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPV 164
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
L E HG+ V V+P + T+
Sbjct: 165 IGVVRTLALELAPHGVTVNAVLPSLILTDR 194
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 128 bits (323), Expect = 1e-36
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA GLG+A GL + G + V ++ R ++L +
Sbjct: 8 VTGAGSGLGRALTIGLVERG----------------HQ----VSMMGRRYQRLQQQELLL 47
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ IVAD FA + E ++++ G P +
Sbjct: 48 GNA----VIGIVADLAHHEDVDVAFAAAVEWGGLPE--LVLHCAGTGEFGP--VGVYTAE 99
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ +M N+++ + + Q + + +R GV+ N+ S+AA + S+Y ASK +
Sbjct: 100 Q--IRRVMESNLVSTILVAQQTVRLI-GERGGVLANVLSSAAQVGKANESLYCASKWGMR 156
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F L++E K + + + P + +
Sbjct: 157 GFLESLRAELKDSPLRLVNLYPSGIRSEF 185
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 128 bits (325), Expect = 2e-36
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 30/211 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+T +TDG+G A A LA+ G A VV+ SR +E +D A +
Sbjct: 19 VTASTDGIGLAIARRLAQDG----------------AH----VVVSSRKQENVDRTVATL 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + + V ++ A G++ ILV+N + P+ + E+
Sbjct: 59 QGE-GLSVTGTVCHVGKAEDRERLVAMAVNLHGGVD--ILVSNAAVN-PFFGNIIDATEE 114
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ I+H NV + M + V+P M ++ G V+ +SS A P P L Y SK +
Sbjct: 115 V--WDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALL 172
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ +L E I V C+ PG + TN S+
Sbjct: 173 GLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ 203
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 126 bits (320), Expect = 7e-36
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 32/208 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+ + L G VV ++RT L +LAK +
Sbjct: 12 VTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI----------------- 54
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ + D D + ++ +LVNN P FL V ++ +
Sbjct: 55 --------EPVCVDLGDWDATEKALGGIGPVD--LLVNNAALVIMQP--FLEVTKEA--F 100
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
N+ ++ + Q+V M+ + G +VN+SS A + P L Y ++K ++ +
Sbjct: 101 DRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLT 160
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ E H I V V P V T+M K
Sbjct: 161 KAMAMELGPHKIRVNSVNPTVVLTDMGK 188
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 126 bits (319), Expect = 8e-36
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+ + L G VV +SRT+ LD+L + +
Sbjct: 12 VTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI----------------- 54
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ + D D + + ++ +LVNN + P FL V ++ +
Sbjct: 55 --------EPVCVDLGDWEATERALGSVGPVD--LLVNNAAVALLQP--FLEVTKEA--F 100
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
N+ ++ + QIV ++ + G +VN+SS + SVY ++K + +
Sbjct: 101 DRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLT 160
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ E H I V V P V T+M +
Sbjct: 161 KVMALELGPHKIRVNAVNPTVVMTSMGQ 188
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 126 bits (320), Expect = 1e-35
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+T G+GKA A L G +V++ R +E ++ EI
Sbjct: 15 VTGSTAGIGKAIATSLVAEGANVLINGRREENVNE--------------------TIKEI 54
Query: 61 RDKY-KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
R +Y + +VAD + V ++ ++ IL+NN+G P + +P+++
Sbjct: 55 RAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD--ILINNLGI--FEPVEYFDIPDED-- 108
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ + N+++ + + + + M+E+++G V+ I+S AA++PS ++ Y A+K S
Sbjct: 109 WFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLS 168
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
L + V +MPG T
Sbjct: 169 RSLAELTTGTNVTVNTIMPGSTLTEG 194
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 125 bits (317), Expect = 3e-35
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 31/212 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGAT G+G A A G A +VL R +LD +
Sbjct: 25 ITGATKGIGADIARAFAAAG----------------A----RLVLSGRDVSELDAARRAL 64
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+++ D + D +P ++ + G++ +LVNN G S+P P + +
Sbjct: 65 GEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLD--VLVNNAGISHPQP--VVDTDPQ 120
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ + N+ + V MV G ++ ++S AAL P P Y SK +
Sbjct: 121 L--FDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGL 178
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ L E HGI V P V T M +
Sbjct: 179 VMATKVLARELGPHGIRANSVCPTVVLTEMGQ 210
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 125 bits (317), Expect = 3e-35
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG T G+G A E A G A + +R + +L+ ++
Sbjct: 19 VTGGTKGIGHAIVEEFAGFG----------------AV----IHTCARNEYELNECLSKW 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ K V D + K+ V G + IL+NN+G P L +
Sbjct: 59 QKK-GFQVTGSVCDASLRPEREKLMQTVSSMF-GGKLDILINNLGAIRSKP--TLDYTAE 114
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + + N+ + + Q+ P + G ++ +SS A ++ + + S+Y A+K ++
Sbjct: 115 D--FSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALN 172
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + +L E+ GI V P +AT +++
Sbjct: 173 QLARNLACEWASDGIRANAVAPAVIATPLAE 203
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 121 bits (307), Expect = 4e-34
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 35/210 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+A A L G V L++R +++L LA AE+
Sbjct: 10 ITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA--------------------AEL 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D + + A +E+ + LVNN G P L + E
Sbjct: 50 EGAL-----PLPGDVREEGDWARAVAAMEEAFGELS--ALVNNAGVGVMKPVHELTLEEW 102
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
V N+ + +P ++ + G +VN+ S A P + Y ASK +
Sbjct: 103 RLVLD----TNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLL 158
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
+ + ++ + V V+PG V T +
Sbjct: 159 GLAGAAMLDLREANVRVVNVLPGSVDTGFA 188
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 122 bits (309), Expect = 6e-34
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 27/213 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+GKA A + + ++L +R EKL+ + I
Sbjct: 38 ITGASAGIGKATALEYLEAS-----------------NGDMKLILAARRLEKLEELKKTI 80
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
++ V D T ++ +E I+ ILVNN G + +R +
Sbjct: 81 DQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDID--ILVNNAGKALG-SDRVGQIAT 137
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++ ++ NV L+++ Q V+P + G +VN+ S A P S+Y ASK V
Sbjct: 138 ED--IQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAV 195
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKI 208
F+ L+ E I V + PG V T S +
Sbjct: 196 GAFTDSLRKELINTKIRVILIAPGLVETEFSLV 228
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 121 bits (306), Expect = 8e-34
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+G+A A A+ + +VL SRT L+ ++ E
Sbjct: 7 ITGAGKGIGRAIALEFARAAR-------------HHPDFEPVLVLSSRTAADLEKISLEC 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R + T I AD +D ++ H+ + I+ LVNN G + E+
Sbjct: 54 RAEG-ALTDTITADISDMADVRRLTTHIVERYGHID--CLVNNAGVGRFGA--LSDLTEE 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + M+ N+ + Q + M Q G + I+S AA S+Y SK
Sbjct: 109 D--FDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQR 166
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ +K + + V PG V T M
Sbjct: 167 GLVETMRLYARKCNVRITDVQPGAVYTPM 195
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 121 bits (305), Expect = 1e-33
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 31/211 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I+G LG A A+ G A D+VL +RT E+L++VA ++
Sbjct: 16 ISGVGPALGTTLARRCAEQG----------------A----DLVLAARTVERLEDVAKQV 55
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D + D TD + K ++ +++NN + F +
Sbjct: 56 TDT-GRRALSVGTDITDDAQVAHLVDETMKAYGRVD--VVINNAFRVPSM-KPFANTTFE 111
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + V L + Q P + E+ KG VVN++S Y +K +
Sbjct: 112 H--MRDAIELTVFGALRLIQGFTPAL-EESKGAVVNVNSMVVRHSQAKYGAYKMAKSALL 168
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
S L +E + GI V V+PGY+ K
Sbjct: 169 AMSQTLATELGEKGIRVNSVLPGYIWGGTLK 199
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 120 bits (304), Expect = 2e-33
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + GLG A+GLA+ G VV+ SR E+ A ++
Sbjct: 26 VTGGSRGLGFGIAQGLAEAG----------------C----SVVVASRNLEEASEAAQKL 65
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+KY V+T D ++ K+ V+++ ++ +VN G + +P P
Sbjct: 66 TEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLD--TVVNAAGINRRHP--AEEFPLD 121
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI-PSPMLSVYGASKLFV 175
E + ++ N+ +C+ + E ++NI S P +S Y ASK V
Sbjct: 122 E--FRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGV 179
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + L E+ ++GI V + PG+ T M
Sbjct: 180 ASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 121 bits (305), Expect = 3e-33
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG GLGK L+ LG A V+ SR + L A +I
Sbjct: 31 ITGGGTGLGKGMTTLLSSLG----------------A----QCVIASRKMDVLKATAEQI 70
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ I D DP + + K I++NN ++ P +
Sbjct: 71 SSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPN--IVINNAAGNFISP--TERLSPN 126
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVE-QRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ I + + + +++ Q+ ++I++ A S + ++K V
Sbjct: 127 A--WKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGV 184
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
S L +E+ K+G+ + PG + T
Sbjct: 185 EAMSKSLAAEWGKYGMRFNVIQPGPIKTKG 214
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 120 bits (303), Expect = 4e-33
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGAT G G+A A A+ G +VL R +E+L LA E+
Sbjct: 26 ITGATSGFGEACARRFAEAGWSLVLTGRREERLQALA--------------------GEL 65
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
K +V + D D ++ +E + L+NN G + + +
Sbjct: 66 SAKTRV--LPLTLDVRDRAAMSAAVDNLPEEFATLR--GLINNAGLALG-TDPAQSCDLD 120
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGV-VVNISSTAALIPSPMLSVYGASKLFV 175
+ + ++ N+ LL ++++P ++ G +VN+ S A P P VYG +K FV
Sbjct: 121 D--WDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFV 178
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
+FS +L+ + + G+ V + PG + S
Sbjct: 179 EQFSLNLRCDLQGTGVRVTNLEPGLCESEFS 209
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 119 bits (302), Expect = 4e-33
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+ A L G ++L +R + +++ +A EI
Sbjct: 9 ITGASGGIGEGIARELGVAGAKILLGARRQARIEAIA--------------------TEI 48
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
RD V D TD I+ +LVNN G P + V E
Sbjct: 49 RDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWGRID--VLVNNAGVMPLSPLAAVKVDEW 105
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E + N+ +L V+P M QR G ++NI S AL P +VY A+K V
Sbjct: 106 ERMID----VNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVR 161
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
S L+ E I V CV PG V + ++
Sbjct: 162 AISDGLRQE--STNIRVTCVNPGVVESELA 189
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 118 bits (299), Expect = 5e-33
Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+A A LA+ G + L +R+ ++L+ + A E+
Sbjct: 7 ITGASRGIGEAIARALARDGYALALGARSVDRLEKI--------------------AHEL 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ V+ D + + V + ++ ++V N G Y +R + E+
Sbjct: 47 MQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVD--VVVANAGLG--YFKRLEELSEE 102
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E +H ++ N++ + + + + +V S + P Y ++K
Sbjct: 103 E--FHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSD-VSARLIPYGGGYVSTKWAAR 159
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
Q E + + PG V T
Sbjct: 160 ALVRTFQIE--NPDVRFFELRPGAVDTYFG 187
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 119 bits (300), Expect = 6e-33
Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 36/213 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A G A ++LI R LD A E+
Sbjct: 16 VTGAGSGIGLEICRAFAASG----------------A----RLILIDREAAALDRAAQEL 55
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG----ILVNNVGYSYPYPERFLAVPEK 116
IVAD TD + EA ILVN+ G + + L +
Sbjct: 56 GAA---VAARIVADVTDA---EAMTAAAAEAEAVAPVSILVNSAGIARLHD--ALETDDA 107
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSV--YGASKLF 174
+ +M NV + + MV + G +VN+ S + I + Y ASK
Sbjct: 108 T--WRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGA 165
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
V + + L +E+ G+ V + PGYVAT M+
Sbjct: 166 VHQLTRALAAEWAGRGVRVNALAPGYVATEMTL 198
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 119 bits (300), Expect = 8e-33
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+ GLG AYAEGLA G A V+L L +
Sbjct: 14 VTGSARGLGFAYAEGLAAAG----------------A----RVILNDIRATLLAESVDTL 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
K D + D TD F+ ++ E ++ IL+NN G Y P + + +
Sbjct: 54 TRK-GYDAHGVAFDVTDELAIEAAFSKLDAEGIHVD--ILINNAGIQYRKP--MVELELE 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ ++ N+ + + + M+ + G ++NI S + P ++ Y A+K +
Sbjct: 109 N--WQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGI 166
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + +E+ + I + PGY+ T+M
Sbjct: 167 KMLTCSMAAEWAQFNIQTNAIGPGYILTDM 196
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 118 bits (299), Expect = 8e-33
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 27/204 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAE 59
+TGAT G G+ + G V+ R +E+L L LG ++ + +LD
Sbjct: 5 VTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIA-----QLD----- 54
Query: 60 IRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
+R++ ++ ++ A + E I+ ILVNN G + E ++
Sbjct: 55 VRNRAAIE-----------EMLASLPAEWCNID--ILVNNAGLALGM-EPAHKASVED-- 98
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ ++ N L+ M + V+P MVE+ G ++NI STA P +VYGA+K FV +FS
Sbjct: 99 WETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFS 158
Query: 180 TDLQSEYKKHGIIVQCVMPGYVAT 203
+L+++ + V + PG V
Sbjct: 159 LNLRTDLHGTAVRVTDIEPGLVGG 182
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 118 bits (298), Expect = 1e-32
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 32/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+GK A A G A VV+ + ++V EI
Sbjct: 16 ITGAGAGIGKEIAITFATAG----------------AS----VVVSDINADAANHVVDEI 55
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D T + +L ++ ILVNN G P P +P
Sbjct: 56 QQLG-GQAFACRCDITSEQELSALADFAISKLGKVD--ILVNNAGGGGPKPFD---MPMA 109
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + NV + + Q+V P M + GV++ I+S AA + ++ Y +SK S
Sbjct: 110 D--FRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAAS 167
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
++ + + I V + PG + T+ K
Sbjct: 168 HLVRNMAFDLGEKNIRVNGIAPGAILTDALK 198
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 118 bits (298), Expect = 2e-32
Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 31/212 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A E L + G A V +R E+L + +
Sbjct: 13 VTGGSSGIGLATVELLLEAG----------------AA----VAFCARDGERLRAAESAL 52
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
R ++ V D D E+ L ILVNN G F +
Sbjct: 53 RQRFPGARLFASVCDVLDALQVRAFAEACERTLGCAS--ILVNNAGQGRVST--FAETTD 108
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ + + +++ + +P + + +V ++S A P P + A++ V
Sbjct: 109 EA--WSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGV 166
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ E+ G+ V ++ G V + +
Sbjct: 167 KNLVRSMAFEFAPKGVRVNGILIGLVESGQWR 198
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 117 bits (296), Expect = 2e-32
Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 33/212 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GA D +G +AK A G V R EKL + AEI
Sbjct: 12 VIGAGDYIGAE----IAKK----------------FAAEGFTVFAGRRNGEKLAPLVAEI 51
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D + + +E + + NVG + +P L ++
Sbjct: 52 EAA-GGRIVARSLDARNEDEVTAFLNAADAHA-PLE--VTIFNVGANVNFP--ILETTDR 105
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + + M+ +G + +TA+L + + ++K +
Sbjct: 106 V--FRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLR 163
Query: 177 KFSTDLQSEYKKHGIIVQ-CVMPGYVATNMSK 207
+ + E I V ++ V T +
Sbjct: 164 AVAQSMARELMPKNIHVAHLIIDSGVDTAWVR 195
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 117 bits (296), Expect = 3e-32
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+A A ++ G ++L++R E+L L ++
Sbjct: 21 ITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNL------------PNTLCAQVDV 68
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
DKY DT + EK + +VNN G E + ++
Sbjct: 69 TDKYTFDTAI-----------TRAEKIYGPAD--AIVNNAGMMLLGQIDTQEANEWQRMF 115
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
NV+ LL+ Q V+ M + G ++NISS A P + Y +K V S
Sbjct: 116 D----VNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISE 171
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNM 205
+++ E + V + P V T +
Sbjct: 172 NVREEVAASNVRVMTIAPSAVKTEL 196
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 116 bits (294), Expect = 6e-32
Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 32/213 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG +G A LA+ G A V++ + ++
Sbjct: 18 VTGGAQNIGLACVTALAEAG----------------A----RVIIADLDEAMATKAVEDL 57
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R D +V D T+ V ++ ++ ILV G A
Sbjct: 58 R-MEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVD--ILVACAGICIS---EVKAEDMT 111
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI--PSPMLSVYGASKLF 174
+ + + N+ + CQ V M+EQ++GV+V I S + LI + Y ASK
Sbjct: 112 DGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAG 171
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
V ++ L +E+ HGI V P Y+ T +++
Sbjct: 172 VHQYIRSLAAEWAPHGIRANAVAPTYIETTLTR 204
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 116 bits (294), Expect = 8e-32
Identities = 42/213 (19%), Positives = 67/213 (31%), Gaps = 31/213 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+GK A GL G A V+++ R +KL E+
Sbjct: 16 VTGGGSGIGKGVAAGLVAAG----------------AS----VMIVGRNPDKLAGAVQEL 55
Query: 61 RDKYKVDTKV--IVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
+ D T+ + V + +V+ G S V
Sbjct: 56 EALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLH--GVVHCAGGS-ENIGPITQVD 112
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLF 174
+ + + NV + + + MV G V ISS AA YG +K
Sbjct: 113 SEA--WRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSA 170
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
V E + V + PG + T++
Sbjct: 171 VDHLMQLAADELGASWVRVNSIRPGLIRTDLVA 203
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 115 bits (291), Expect = 1e-31
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 34/211 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+GK+ + L L D V V ++R++ L + +
Sbjct: 7 VTGVSRGIGKSIVDVLFSLDKDTV------------------VYGVARSEAPLKKLKEKY 48
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D+ +V D T+ ++ K I+ LV N G P + +
Sbjct: 49 GDR----FFYVVGDITEDSVLKQLVNAAVKGHGKID--SLVANAGVLEPV-QNVNEIDVN 101
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + N +++S+ I +P + ++ G VV +SS A + YG+SK ++
Sbjct: 102 A--WKKLYDINFFSIVSLVGIALPEL-KKTNGNVVFVSSDACNMYFSSWGAYGSSKAALN 158
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
F+ L +E + + V PG V T+M
Sbjct: 159 HFAMTLANE--ERQVKAIAVAPGIVDTDMQV 187
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 115 bits (291), Expect = 2e-31
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 33/209 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A A G A+ G V+ RT + + VA EI
Sbjct: 36 VTGAGSGIGRAIAHGYARAGAHVLAWGRT---------------------DGVKEVADEI 74
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG----ILVNNVGYSYPYPERFLAVPEK 116
D + +VAD D + A +LVNN G P V
Sbjct: 75 ADG-GGSAEAVVADLADL---EGAANVAEELAATRRVDVLVNNAGIIARAP--AEEVSLG 128
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ ++ N+ + + M+ G +V I+S + ++ Y ASK V
Sbjct: 129 R--WREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVV 186
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L SE+ G+ V + PGYV T
Sbjct: 187 GLTRALASEWAGRGVGVNALAPGYVVTAN 215
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 115 bits (291), Expect = 2e-31
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG+++G+G+A A A+ G AK V + R E+L+ +I
Sbjct: 11 ITGSSNGIGRATAVLFAREG----------------AK----VTITGRHAERLEETRQQI 50
Query: 61 RDKYKVDTKV--IVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
+ V +VAD T +I + + ++ ILVNN G + P +
Sbjct: 51 LAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLD--ILVNNAGAAIPDSQSKTGTA 108
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA-LIPSPMLSVYGASKL 173
+ Y ++ N+ +++++ + +PH+ KG +VNISS A+ L +P Y +K
Sbjct: 109 QSIESYDATLNLNLRSVIALTKKAVPHLS-STKGEIVNISSIASGLHATPDFPYYSIAKA 167
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ +++ + + +HGI V + PG VAT
Sbjct: 168 AIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS 201
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 115 bits (291), Expect = 2e-31
Identities = 57/214 (26%), Positives = 81/214 (37%), Gaps = 34/214 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+GK A A+ G A V + +R + L VA EI
Sbjct: 37 ITGASTGIGKKVALAYAEAG----------------A----QVAVAARHSDALQVVADEI 76
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I D T P + + EL GI+ I V N G L +P +
Sbjct: 77 A-GVGGKALPIRCDVTQPDQVRGMLDQMTGELGGID--IAVCNAGIVSVQA--MLDMPLE 131
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALI--PSPMLSVYGASKL 173
E + I NV + Q MV+Q G ++ +S + I +S Y SK
Sbjct: 132 E--FQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKA 189
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
V + + E H I V V PGY+ T + +
Sbjct: 190 AVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVE 223
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 116 bits (293), Expect = 3e-31
Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 37/216 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG +G+G L G V + D ++ +D A +
Sbjct: 13 VTGGANGVGIGLVRQLLNQGCKVAI-------AD-------------IRQDSIDKALATL 52
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+ + + D VE + IL NN G + P
Sbjct: 53 EAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVS--ILCNNAGVNLFQP--IEESSY 108
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVE------QRKGVVVNISSTAALIPSPMLSVYG 169
+ + ++ N+ +++ +P MVE Q+ G VVN +S AA + + +Y
Sbjct: 109 DD--WDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYN 166
Query: 170 ASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+K V S L K+ I V + PG V + +
Sbjct: 167 TTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYI 202
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 114 bits (288), Expect = 3e-31
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+A A LA G V + +R EKL L ++ K+ + ++
Sbjct: 12 ITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDE------LTAAGAKVHVLELDV 65
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
D+ VD V A + L G++ ILVNN G P + +
Sbjct: 66 ADRQGVDAAV-----------ASTVEALGGLD--ILVNNAGIMLLGPVEDADTTDWTRMI 112
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
+ N++ L+ M + +PH++ KG VV +SS A + +VY A+K V+ FS
Sbjct: 113 -DT---NLLGLMYMTRAALPHLLRS-KGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSE 167
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNM 205
L+ E + G+ V + PG T +
Sbjct: 168 TLRQEVTERGVRVVVIEPGTTDTEL 192
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 113 bits (286), Expect = 6e-31
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ A+ G+G+A A+ L++ G +V + +R +E L
Sbjct: 24 VLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGH---------------------- 61
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ +V D + +++ ++ ILV N G P F + +
Sbjct: 62 --------RYVVCDLRKD--LDLLFEKVKEVD--ILVLNAGG--PKAGFFDEL--TNEDF 105
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
+ + ++ + + +P M E+ G +V I+S + + P L ++++ ++ F
Sbjct: 106 KEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLK 165
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNM 205
L E +GI V CV PG+ T
Sbjct: 166 TLSFEVAPYGITVNCVAPGWTETER 190
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 114 bits (287), Expect = 7e-31
Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 30/209 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG G+G AE + G V+ SR+ ++ A ++
Sbjct: 32 ITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLT--------------------AARKL 71
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D P KE I+ IL+N ++ P A+
Sbjct: 72 AGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRID--ILINCAAGNFLCP--AGALSFN 127
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ +M + ++ +++ GV+VNI++T + G++K V
Sbjct: 128 A--FKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVD 185
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E+ I V + PG ++
Sbjct: 186 AMTRHLAVEWGPQNIRVNSLAPGPISGTE 214
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 113 bits (286), Expect = 1e-30
Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 34/214 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG++ G+G A AE A+ G DV + + + A +
Sbjct: 39 VTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK---------------------AEHL 77
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ Y V +K + +DP + + EK+ I+ + V N G ++
Sbjct: 78 QKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTID--VFVANAGVTWTQGPEIDVDNYD 135
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI---PSPMLSVYGASKL 173
++ I+ ++ + + + KG ++ SS + I P + Y +K
Sbjct: 136 S--WNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQ-APYNTAKA 192
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + L E+ V + PGY+ T+++
Sbjct: 193 ACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITD 225
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 113 bits (286), Expect = 1e-30
Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G+ A+GL + G A V + +R E + A +
Sbjct: 34 VTGGSRGIGQMIAQGLLEAG----------------A----RVFICARDAEACADTATRL 73
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I AD + ++ + + ++ ILVNN G S+ + P
Sbjct: 74 SAYGDCQA--IPADLSSEAGARRLAQALGELSARLD--ILVNNAGTSWGAA--LESYPVS 127
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHM----VEQRKGVVVNISSTAALIPSPMLSV-YGAS 171
+ +M NV ++ S Q ++P + + V+NI S A + + YG S
Sbjct: 128 G--WEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPS 185
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
K + + S L E I V + PG + M++
Sbjct: 186 KAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR 221
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 113 bits (286), Expect = 2e-30
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 31/209 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G A A AK G A +V +E +D A
Sbjct: 39 VTGASYGIGFAIASAYAKAG----------------A----TIVFNDINQELVDRGMAAY 78
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ ++ V D TD + A +E E+ I+ ILVNN G R +
Sbjct: 79 KAA-GINAHGYVCDVTDEDGIQAMVAQIESEVGIID--ILVNNAGIIR----RVPMIEMT 131
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ ++ ++ + + V+P M+++ G ++NI S + + +S Y A+K +
Sbjct: 132 AAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK 191
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ ++ SEY + I + PGY+AT
Sbjct: 192 MLTKNIASEYGEANIQCNGIGPGYIATPQ 220
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 113 bits (284), Expect = 3e-30
Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 34/208 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G G+A AE G V+ +R E LD+L D
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAE--------------- 54
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I D TD + A V ++ +LVNN G + F E+
Sbjct: 55 ---------AISLDVTDGERIDVVAADVLARYGRVD--VLVNNAGRTQVGA--FEETTER 101
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E ++ +V + + ++P M E+ G VVNISS + S Y A+K +
Sbjct: 102 E--LRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALE 159
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATN 204
+ S L E GI V V PG TN
Sbjct: 160 QLSEGLADEVAPFGIKVLIVEPGAFRTN 187
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 113 bits (284), Expect = 3e-30
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 31/213 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G+ A+ L+ G VV+ R + LD A EI
Sbjct: 38 VTGGGTGVGRGIAQALSAEG----------------YS----VVITGRRPDVLDAAAGEI 77
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + +V D DP +FA V E ++ +LVNN G + P P V +
Sbjct: 78 GGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLD--LLVNNAGSNVP-PVPLEEVTFE 134
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ--RKGVVVNISSTAALIPSPMLSVYGASKLF 174
+ ++ I+ N+ Q M Q R G ++N S +A P P + Y A+K
Sbjct: 135 Q--WNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHA 192
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
++ + + + H I + G AT+M+
Sbjct: 193 ITGLTKSTALDGRMHDIACGQIDIGNAATDMTA 225
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 112 bits (282), Expect = 3e-30
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+T G+G A LA G D+VL +++ V A +
Sbjct: 9 VTGSTSGIGLGIATALAAQGADIVLNGF-------------------GDAAEIEKVRAGL 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYP-ERFLAVPE 115
++ V AD + + + +++ I+ ILVNN G + E F
Sbjct: 50 AAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRID--ILVNNAGIQHTALIEDF----- 102
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ I+ N+ + +PHM +Q G ++NI+S L+ S S Y A+K V
Sbjct: 103 PTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV 162
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ E GI + PG+V T +
Sbjct: 163 VGFTKVTALETAGQGITANAICPGWVRTPL 192
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 112 bits (282), Expect = 4e-30
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 32/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A A AK G A VV+ E + VAA I
Sbjct: 17 VTGAAAGIGRAIAGTFAKAG----------------AS----VVVTDLKSEGAEAVAAAI 56
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R + + TD + + I +LVNN G P P
Sbjct: 57 RQA-GGKAIGLECNVTDEQHREAVIKAALDQFGKIT--VLVNNAGGGGPKPFDM-----P 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + N+ +L + Q+ PHM + G ++NISS A + ++ YG+SK V+
Sbjct: 109 MSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVN 168
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ ++ + GI V + PG + T+
Sbjct: 169 HLTRNIAFDVGPMGIRVNAIAPGAIKTDALA 199
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 111 bits (281), Expect = 4e-30
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 30/209 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G A A L LG A+ VVL +R EKL V EI
Sbjct: 34 VTGASRGIGAAIARKLGSLG----------------AR----VVLTARDVEKLRAVEREI 73
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + D + V + +LVNN G + +
Sbjct: 74 VAA-GGEAESHACDLSHSDAIAAFATGVLAAHGRCD--VLVNNAGVG-WFGGPLHTMKPA 129
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E + ++ N+ + + P M+ ++G ++NISS A P + Y ASK ++
Sbjct: 130 E--WDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLN 187
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
T E ++H + V V PG V T
Sbjct: 188 GLMTSAAEELRQHQVRVSLVAPGSVRTEF 216
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 111 bits (280), Expect = 5e-30
Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 32/215 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+ A L K G A V + R + L VA E
Sbjct: 10 VTGASRGIGRGIALQLCKAG----------------A----TVYITGRHLDTLRVVAQEA 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTG-IEAGILVNNVGYSYPYPERFLAVP- 114
+ +V D + +F V++E G ++ +LVNN
Sbjct: 50 QSL-GGQCVPVVCDSSQESEVRSLFEQVDREQQGRLD--VLVNNAYAGVQTILNTRNKAF 106
Query: 115 --EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASK 172
+++ +I + + MV +G++V ISS +L YG K
Sbjct: 107 WETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL-QYMFNVPYGVGK 165
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
K + D E ++HG+ + PG V T + K
Sbjct: 166 AACDKLAADCAHELRRHGVSCVSLWPGIVQTELLK 200
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 111 bits (280), Expect = 7e-30
Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 30/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G+ +E LA G D+ V + + +E+ I
Sbjct: 7 VTGGAQGIGRGISEKLAADGFDIA------------------VADLPQQEEQAAETIKLI 48
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D TD ++L G + +LVNN G + P L V E+
Sbjct: 49 EAA-DQKAVFVGLDVTDKANFDSAIDEAAEKLGGFD--VLVNNAGIAQIKP--LLEVTEE 103
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ I NV ++ Q E KG ++N +S AA+ P+LS Y +K V
Sbjct: 104 D--LKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAV 161
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ E G V PG V T M
Sbjct: 162 RGLTQAAAQELAPKGHTVNAYAPGIVGTGM 191
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 111 bits (281), Expect = 1e-29
Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 39/237 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+GKA + L +LG + VV+ SR E+L + A E+
Sbjct: 23 VTGGATGIGKAIVKELLELG----------------SN----VVIASRKLERLKSAADEL 62
Query: 61 RDKYKVDTKV----IVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLA 112
+ + I + + + I LVNN G + P
Sbjct: 63 QANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKIN--FLVNNGGGQFLSP--AEH 118
Query: 113 VPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASK 172
+ K +H ++ N+ MC+ V +++ G +VNI P+ GA++
Sbjct: 119 ISSKG--WHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAAR 175
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
V + L E+ GI + CV PG + + + +F + + + I
Sbjct: 176 AGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAV----ENYGSWGQSFFEGSFQKI 228
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 111 bits (279), Expect = 2e-29
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 33/237 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG+++G+G++ A AK G A+ V + R +++L+ +I
Sbjct: 31 ITGSSNGIGRSAAVIFAKEG----------------AQ----VTITGRNEDRLEETKQQI 70
Query: 61 RDK--YKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
+VAD T+ I + I+ ILVNN G + P
Sbjct: 71 LKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKID--ILVNNAGANLADGTANTDQP 128
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISS-TAALIPSPMLSVYGASKL 173
+ Y N ++ M Q H+++ KG +VN+SS A Y +K
Sbjct: 129 VEL--YQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSSIVAGPQAHSGYPYYACAKA 185
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM-SKIKKSSWMVPSPATFVDSALKTI 229
+ +++ + +HG+ V V PG VAT + +F+ S + I
Sbjct: 186 ALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI 242
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 110 bits (278), Expect = 2e-29
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG+++G+G+ A A+ G A V + R+ E+L+ I
Sbjct: 11 ITGSSNGIGRTTAILFAQEG----------------AN----VTITGRSSERLEETRQII 50
Query: 61 RDK--YKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
+ +VAD T +I K+ I+ +LVNN G + P
Sbjct: 51 LKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKID--VLVNNAGAAIPDAFGTTGTD 108
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA-LIPSPMLSVYGASKL 173
+ +YH + N+ ++ M + V PH+V KG +VN+SS A P Y +K
Sbjct: 109 QGIDIYHKTLKLNLQAVIEMTKKVKPHLV-ASKGEIVNVSSIVAGPQAQPDFLYYAIAKA 167
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM-SKIKKSSWMVPSPATFVDSALKTI 229
+ +++ + K GI V V PG V T + + F+ S + I
Sbjct: 168 ALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI 224
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 110 bits (278), Expect = 2e-29
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG+T G+G A A LAK G ++VL +++ V E+
Sbjct: 30 ITGSTSGIGLAIARTLAKAGANIVLNGFGAP-------------------DEIRTVTDEV 70
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYP-ERFLAVPE 115
AD T P + A V G + ILVNN G + E F
Sbjct: 71 AGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGAD--ILVNNAGVQFVEKIEDF----- 123
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ I+ N+ + + +P M ++ G ++NI+S L+ SP S Y A+K +
Sbjct: 124 PVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGI 183
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + E + G+ V + PGYV T +
Sbjct: 184 MGLTKTVALEVAESGVTVNSICPGYVLTPL 213
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 109 bits (274), Expect = 4e-29
Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 42/213 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
A G+G + L K + +I E LA+L
Sbjct: 10 FVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL--------------------K 49
Query: 61 RDKYKVDTKVIVADFTDP-----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
KV+ D T P K+ + +L ++ IL+N G
Sbjct: 50 AINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVD--ILINGAGIL------------ 95
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKG---VVVNISSTAALIPSPMLSVYGASK 172
+ + N L++ ++ +++ G ++ NI S + VY ASK
Sbjct: 96 DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASK 155
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V F+ L G+ + PG T +
Sbjct: 156 AAVVSFTNSLAKLAPITGVTAYSINPGITRTPL 188
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 109 bits (275), Expect = 4e-29
Identities = 57/209 (27%), Positives = 82/209 (39%), Gaps = 36/209 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGAT G+G A A+ G A+ V + R K+ LD AEI
Sbjct: 34 ITGATSGIGLAAAKRFVAEG----------------AR----VFITGRRKDVLDAAIAEI 73
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I AD + +++ V+ E I+ +L N G P V E+
Sbjct: 74 GGG----AVGIQADSANLAELDRLYEKVKAEAGRID--VLFVNAGGGSMLP--LGEVTEE 125
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ Y + NV +L Q +P + R VV STA +P SVY ASK +
Sbjct: 126 Q--YDDTFDRNVKGVLFTVQKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALR 181
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ + + K GI + + PG T
Sbjct: 182 SFARNWILDLKDRGIRINTLSPGPTETTG 210
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 110 bits (276), Expect = 5e-29
Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A A A+ G +VL DV + L+ +
Sbjct: 36 VTGGASGIGLATATEFARRGARLVLS---------------DV-----DQPALEQAVNGL 75
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R + D +V D ++ + L G++ ++ +N G P +
Sbjct: 76 RGQ-GFDAHGVVCDVRHLDEMVRLADEAFRLLGGVD--VVFSNAGIVVAGP--LAQMNHD 130
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ + ++ ++ + + +P ++EQ G + +S A L+P+ L YG +K V
Sbjct: 131 D--WRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGV 188
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E K +GI V + P V T +
Sbjct: 189 VGLAETLAREVKPNGIGVSVLCPMVVETKL 218
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 108 bits (272), Expect = 6e-29
Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 39/209 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGAT G+G + L++ V + R E L +A
Sbjct: 10 VTGATGGMGIEIVKDLSRDH---------------------IVYALGRNPEHLAALAEIE 48
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG----ILVNNVGYSYPYPERFLAVPEK 116
+ I +D E + ++ LV+ + A
Sbjct: 49 G------VEPIESDIVKE---VLEEGGVDKLKNLDHVDTLVHAAAVARDTT--IEAGSVA 97
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E +H + NVI + + ++P + G V+ I+S A P P ++Y ASK +
Sbjct: 98 E--WHAHLDLNVIVPAELSRQLLPAL-RAASGCVIYINSGAGNGPHPGNTIYAASKHALR 154
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + E +GI V V PG T M
Sbjct: 155 GLADAFRKEEANNGIRVSTVSPGPTNTPM 183
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 108 bits (273), Expect = 7e-29
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 36/233 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG++ G+GKA A LA+ G ++V + +R+K+ A EI
Sbjct: 9 VTGSSRGVGKAAAIRLAENGYNIV-------------------INYARSKKAALETAEEI 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
K V V+ A+ P ++F +++ ++ + VNN P + + E
Sbjct: 50 E-KLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLD--VFVNNAASGVLRP--VMELEET 104
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ M+ N LL Q M + G +V+ISS ++ + G SK +
Sbjct: 105 H--WDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALE 162
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+ L E IIV V G + T+ K P+ ++ A +
Sbjct: 163 ALTRYLAVELSPKQIIVNAVSGGAIDTDALK------HFPNREDLLEDARQNT 209
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 109 bits (274), Expect = 7e-29
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 37/217 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G A A L + G+ VV +RT ++ L AAE
Sbjct: 37 VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL--------------------AAEC 76
Query: 61 RDK-YKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+ Y D ++ +F+ + + +G++ I +NN G + P +
Sbjct: 77 KSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVD--ICINNAGLARPDTLLSGSTSG 134
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQR--KGVVVNISSTAAL--IPSPMLSVYGAS 171
+ ++ + NV+ L + M E+ G ++NI+S + +P + Y A+
Sbjct: 135 ----WKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSAT 190
Query: 172 KLFVSKFSTDLQSE--YKKHGIIVQCVMPGYVATNMS 206
K V+ + L+ E + I C+ PG V T +
Sbjct: 191 KYAVTALTEGLRQELREAQTHIRATCISPGVVETQFA 227
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 108 bits (272), Expect = 8e-29
Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 30/228 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA +G A A LA+ G + L+ +E L+ A +
Sbjct: 12 VTGAGGNIGLATALRLAEEG----------------TA----IALLDMNREALEKAEASV 51
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R+K V+ + V D T V ++ I+ L NN GY P
Sbjct: 52 REK-GVEARSYVCDVTSEEAVIGTVDSVVRDFGKID--FLFNNAGYQGA-FAPVQDYPSD 107
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + ++ NV + + V M+ Q G +VN +S A + P ++ YG SK +
Sbjct: 108 D--FARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAII 165
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDS 224
+ + + I V + PGY+ ++ + + +
Sbjct: 166 ALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFST 213
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 107 bits (270), Expect = 1e-28
Identities = 28/207 (13%), Positives = 56/207 (27%), Gaps = 30/207 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+T A G A E L + G VV + + E
Sbjct: 6 VTHARHFAGPAAVEALTQDGYTVVCHDA-------------------SFADAAERQRFES 46
Query: 61 RDKYKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPE-RFLAVPEKET 118
+ I P+ + + I+ +V+N P E +
Sbjct: 47 EN-----PGTIALAEQKPERLVDATLQHGEAID--TIVSNDYIPRPMNRLPLEGTSEAD- 98
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ I + + Q + + V+ I+S+ P +YG ++
Sbjct: 99 -IRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVAL 157
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNM 205
+ GI++ + P +
Sbjct: 158 VESAAKTLSRDGILLYAIGPNFFNNPT 184
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 107 bits (269), Expect = 2e-28
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 30/230 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+T G A L++ G V + ++ D L A
Sbjct: 6 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE--------------------AFA 45
Query: 61 RDKYKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
++ +P + V ++ +LV+N ++ PE
Sbjct: 46 ETYPQLK----PMSEQEPAELIEAVTSAYGQVD--VLVSNDIFA---PEFQPIDKYAVED 96
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
Y + I ++ V M +++ G ++ I+S P LS Y +++ +
Sbjct: 97 YRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLA 156
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
L E ++ I V + P Y+ + S + + V K
Sbjct: 157 NALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT 206
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 107 bits (269), Expect = 3e-28
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+GKA A L K G V + VA+EI
Sbjct: 7 VTGAGQGIGKAIAL--------------------RLVKDGFAVAIADYNDATAKAVASEI 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D +D K L G + ++VNN G + P ++ +
Sbjct: 47 NQA-GGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD--VIVNNAGVAPSTP--IESITPE 101
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ + NV ++ Q + ++ G ++N S A + +P L+VY +SK V
Sbjct: 102 I--VDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAV 159
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + GI V PG V T M
Sbjct: 160 RGLTQTAARDLAPLGITVNGYCPGIVKTPM 189
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 106 bits (267), Expect = 3e-28
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 40/210 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G+A AE L G V + SR E+ AA+
Sbjct: 7 VTGGSRGIGRAIAEALVARGYRVAIASRNPEE------------------------AAQ- 41
Query: 61 RDKYKVDTKVIVADFTD---PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKE 117
+ + D + + L G+ +LV+ + R A+
Sbjct: 42 ----SLGAVPLPTDLEKDDPKGLVKRALEALGGLH--VLVHAAAVN----VRKPALELSY 91
Query: 118 TVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSV--YGASKLFV 175
+ +++ ++ + Q PHM E G V+ I S + + Y +K +
Sbjct: 92 EEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTAL 151
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E+ + GI V + PGYV T
Sbjct: 152 LGLTRALAKEWARLGIRVNLLCPGYVETEF 181
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 107 bits (269), Expect = 3e-28
Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 35/210 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A A L K G A V + V A +
Sbjct: 17 VTGGSKGIGAAIARALDKAG----------------AT----VAIADLDVMAAQAVVAGL 56
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + D T L G + +L N G S P + + ++
Sbjct: 57 ENG----GFAVEVDVTKRASVDAAMQKAIDALGGFD--LLCANAGVSTMRP--AVDITDE 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRK-GVVVNISSTAALIPSPMLSVYGASKLFV 175
E + N + QI H + GV+VN +S AA + +P+L+ Y ASK V
Sbjct: 109 E--WDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAV 166
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ L E I V CV PG+V T M
Sbjct: 167 FGWTQALAREMAPKNIRVNCVCPGFVKTAM 196
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 106 bits (267), Expect = 4e-28
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 32/214 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A A A G A VVL+ RT+ L V+ +I
Sbjct: 19 VTGAARGIGAAAARAYAAHG----------------AS----VVLLGRTEASLAEVSDQI 58
Query: 61 RDKYKVDTKVI-----VADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
+ + +I A ++ A VE E ++ L++N +P
Sbjct: 59 KSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLD--GLLHNASII-GPRTPLEQLP 115
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLF 174
+++ + +MH NV + + ++P + + SS+ YG SK
Sbjct: 116 DED--FMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFA 173
Query: 175 VSKFSTDLQSEYK-KHGIIVQCVMPGYVATNMSK 207
L E + + + PG T M
Sbjct: 174 TEGLMQTLADELEGVTAVRANSINPGATRTGMRA 207
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 106 bits (267), Expect = 5e-28
Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 38/210 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAE 59
+ G T G+G A L + G +V+L R + + + + G V
Sbjct: 13 VIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVH--------------- 57
Query: 60 IRDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+ +D D + A + L I+ +L N G S P F V E
Sbjct: 58 ----------ALRSDIADLNEIAVLGAAAGQTLGAID--LLHINAGVSELEP--FDQVSE 103
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
Y N Q + P + + G +V SS A P +SVY ASK +
Sbjct: 104 AS--YDRQFAVNTKGAFFTVQRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAAL 159
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F++ L +E GI V V PG++ T
Sbjct: 160 VSFASVLAAELLPRGIRVNSVSPGFIDTPT 189
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 106 bits (267), Expect = 5e-28
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 35/210 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG+ G+G+A+AE + G A V + E+ AAEI
Sbjct: 13 ITGSARGIGRAFAEAYVREG----------------AT----VAIADIDIERARQAAAEI 52
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
++D V A + G++ ILVNN P + + +
Sbjct: 53 GPAAYAVQMD----VTRQDSIDAAIAATVEHAGGLD--ILVNNAALFDLAP--IVEITRE 104
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
Y + NV L Q M+ Q R G ++N++S A ++++Y A+K V
Sbjct: 105 S--YEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAV 162
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + KH I V + PG V
Sbjct: 163 ISLTQSAGLDLIKHRINVNAIAPGVVDGEH 192
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 107 bits (270), Expect = 6e-28
Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 28/212 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+GKA A AK G ++V+ ++T + L + A EI
Sbjct: 50 ITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLL-------------GTIYTAAEEI 96
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D D K+ GI+ ILVNN L P K
Sbjct: 97 EAV-GGKALPCIVDVRDEQQISAAVEKAIKKFGGID--ILVNNASAISLTN--TLDTPTK 151
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPS--PMLSVYGASKLF 174
+M+ N + +P++ + + ++NIS L P Y +K
Sbjct: 152 R--LDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYG 209
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGY-VATNM 205
+S + + E+ K I V + P + T
Sbjct: 210 MSMYVLGMAEEF-KGEIAVNALWPKTAIHTAA 240
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 106 bits (267), Expect = 6e-28
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A A LA G V L R + L AAEI
Sbjct: 33 VTGAGSGVGRAVAVALAGAG----------------YG----VALAGRRLDALQETAAEI 72
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D D + D TDP +F ++ ++ +L NN G P +
Sbjct: 73 GD----DALCVPTDVTDPDSVRALFTATVEKFGRVD--VLFNNAGTGAP-AIPMEDLTFA 125
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ--RKGVVVNISSTAALIPSPMLSVYGASKLF 174
+ + ++ N+ Q M Q R G ++N S +A P P + Y A+K
Sbjct: 126 Q--WKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHA 183
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
++ + + + H I + G T M++
Sbjct: 184 ITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQ 216
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 105 bits (265), Expect = 9e-28
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG + G+GK A AK G A+ VV+ RTKEKL+ EI
Sbjct: 11 ITGGSSGMGKGMATRFAKEG----------------AR----VVITGRTKEKLEEAKLEI 50
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D + K+ ++++ I+ IL+NN ++ P +
Sbjct: 51 EQF-PGQILTVQMDVRNTDDIQKMIEQIDEKFGRID--ILINNAAGNFICP--AEDLSVN 105
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++++++ + Q + + +E+ KG ++N+ +T A P + A+K V
Sbjct: 106 G--WNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV 163
Query: 176 SKFSTDLQSEY-KKHGIIVQCVMPGYVATNM 205
+ L E+ +K+GI V + PG +
Sbjct: 164 LAMTKTLAVEWGRKYGIRVNAIAPGPIERTG 194
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 106 bits (266), Expect = 2e-27
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G G+ AE LA G V R + E + A +
Sbjct: 10 ITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNV------------EAIAGFARD- 56
Query: 61 RDKYKVDTKVIVADFTDPK-IFAHVEKELTGIEAG---ILVNNVGYSYPYP-ERFLAVPE 115
VD + + D + +++ + E G +L++N G+ P E A
Sbjct: 57 ---NDVDLRTLELDVQSQVSVDRAIDQIIG--EDGRIDVLIHNAGHMVFGPAE---AFTP 108
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPS-PMLSVYGASKLF 174
++ + + NV++ + + +PHM Q+ G+++ ISS+++ + P L+ Y A+K
Sbjct: 109 EQ--FAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAA 166
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSS 212
+ + E + GI ++PG + + S
Sbjct: 167 MDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSG 204
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 104 bits (263), Expect = 3e-27
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 34/209 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G+A AE AK G A VV+ ++ VA EI
Sbjct: 32 VTGGGSGIGRATAELFAKNG----------------AY----VVVADVNEDAAVRVANEI 71
Query: 61 RDK---YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
K +VD V+ D + + + ++ +LVNN G+ + +PE+
Sbjct: 72 GSKAFGVRVD----VSSAKDAESMVEKTTAKWGRVD--VLVNNAGFGTTGN--VVTIPEE 123
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ IM NV + + V+P M G ++N +S A + Y ASK +S
Sbjct: 124 T--WDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAIS 181
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + ++ K GI V V PG + +
Sbjct: 182 SLTRAMAMDHAKEGIRVNAVAPGTIDSPY 210
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 104 bits (261), Expect = 3e-27
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 29/210 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G G A A G + V + + E L+ A
Sbjct: 7 VTGASSGNGLAIATRFLARG----------------DR----VAALDLSAETLEETARTH 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLA-VPE 115
Y + AD D A ++ I+ +LVNN G + L P
Sbjct: 47 WHAYADKVLRVRADVADEGDVNAAIAATMEQFGAID--VLVNNAGITGNSEAGVLHTTPV 104
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++ + +M NV + C+ V+PHM+ Q GV+VNI+S A+L+ P S Y SK V
Sbjct: 105 EQ--FDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAV 162
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + + +Y GI V PG + T M
Sbjct: 163 LQLTKSVAVDYAGSGIRCNAVCPGMIETPM 192
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 104 bits (261), Expect = 5e-27
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 25/210 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I+G + G+G A A+ +A G +V L++++ E L + A EI
Sbjct: 14 ISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLP-------------GTIYTAAKEI 60
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ IV D D A ++ GI+ I VNN VP K
Sbjct: 61 EEA-GGQALPIVGDIRDGDAVAAAVAKTVEQFGGID--ICVNNASAINLGS--IEEVPLK 115
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPS-PMLSVYGASKLFV 175
+ + V ++ Q +PHM + ++ +S L P + Y +K +
Sbjct: 116 R--FDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGM 173
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + + E + GI + P
Sbjct: 174 TLCALGIAEELRDAGIASNTLWPRTTVATA 203
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 103 bits (260), Expect = 6e-27
Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 34/215 (15%)
Query: 1 ITGATD--GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+TGA+ G+G A G A++G V + ++ + +
Sbjct: 25 VTGASGPKGMGIEAARGCAEMGAAVAITYASRA-------------------QGAEENVK 65
Query: 59 EIRDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
E+ Y + K K+ V + I+ + N G +
Sbjct: 66 ELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQID--AFIANAGA----TADSGILD 119
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI--PSPMLSVYGASK 172
+++++ ++ + V H E+ G +V +S + I + Y +K
Sbjct: 120 GSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAK 179
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ L +E++ V + PGY+ T +S
Sbjct: 180 AGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSD 213
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 103 bits (260), Expect = 6e-27
Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 41/237 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+ A+ AK G AK VV++ R K + VA EI
Sbjct: 14 ITGAGSGFGEGMAKRFAKGG----------------AK----VVIVDRDKAGAERVAGEI 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D + AD + + ++ ILVNN G + P+ V +
Sbjct: 54 GDA----ALAVAADISKEADVDAAVEAALSKFGKVD--ILVNNAGIGHK-PQNAELVEPE 106
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKG----VVVNISSTAALIPSPMLSVYGASK 172
E + I+ NV + M ++PH E V++N++ST A P P L+ Y A+K
Sbjct: 107 E--FDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATK 164
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+V + L E I V + P T + ++M +I
Sbjct: 165 GWVVSVTKALAIELAPAKIRVVALNPVAGETPLLT----TFMGEDSEEIRKKFRDSI 217
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 103 bits (259), Expect = 7e-27
Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+DG+G+ A A+ G A V+L+ R +EKL VA+ I
Sbjct: 17 VTGASDGIGREAAMTYARYG----------------AT----VILLGRNEEKLRQVASHI 56
Query: 61 RDKYKVDTKVIVADF--TDPK----IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVP 114
++ + + D + + + ++ +++N G +
Sbjct: 57 NEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLD--GVLHNAGLLGD----VCPMS 110
Query: 115 E-KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKL 173
E V+ ++M NV + Q ++P +++ G +V SS+ Y ASK
Sbjct: 111 EQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKF 170
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
L EY++ + V C+ PG T M
Sbjct: 171 ATEGMMQVLADEYQQ-RLRVNCINPGGTRTAM 201
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 103 bits (259), Expect = 8e-27
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 36/206 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A L G V + R + L D+ R D + +
Sbjct: 33 VTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDL----REAAYADGLPGAV 88
Query: 61 RDKY-KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
++D I+VNN G + +
Sbjct: 89 AAGLGRLD---------------------------IVVNNAGVISRGR--ITETTDAD-- 117
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ + NV +C+ +P M G +VN++S L P P ++Y +K ++ +
Sbjct: 118 WSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLT 177
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
+ ++ GI + V P V T M
Sbjct: 178 QCMGMDHAPQGIRINAVCPNEVNTPM 203
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 103 bits (258), Expect = 9e-27
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+T G+G A+ LA+ G ++VL AEI
Sbjct: 9 VTGSTSGIGLGIAQVLARAGANIVLNGFGDP----------------------APALAEI 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYP-ERFLAVPE 115
+ V AD +D +FA E+E G++ ILVNN G + P E+F
Sbjct: 47 AR-HGVKAVHHPADLSDVAQIEALFALAEREFGGVD--ILVNNAGIQHVAPVEQF----- 98
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ I+ N+ + ++ +P M + G ++NI+S L+ S + Y A+K V
Sbjct: 99 PLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGV 158
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + E + + PG+V T +
Sbjct: 159 VGLTKVVGLETATSNVTCNAICPGWVLTPL 188
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 103 bits (259), Expect = 1e-26
Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 27/214 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G A A A+ G +V + +++ L + + AA +
Sbjct: 11 ITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLP-------------GTIHSAAAAV 57
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D + A GI+ ILVNN + L P K
Sbjct: 58 NAA-GGQGLALKCDIREEDQVRAAVAATVDTFGGID--ILVNNASAIWLRG--TLDTPMK 112
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPS--PMLSVYGASKLF 174
+ + N Q +PH+++ ++ ++ +L P+ + Y +K+
Sbjct: 113 R--FDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMG 170
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPG-YVATNMSK 207
+S + L +E+ G+ + + P +AT+
Sbjct: 171 MSLVTLGLAAEFGPQGVAINALWPRTVIATDAIN 204
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 104 bits (261), Expect = 1e-26
Identities = 44/210 (20%), Positives = 67/210 (31%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKL---GIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVA 57
ITG + G+G A LA V R + L + + + E
Sbjct: 7 ITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE------ 60
Query: 58 AEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG---ILVNNVGYSYPYPERFLAVP 114
+ D D V + G +LV N G P A+
Sbjct: 61 ------------TLQLDVRDS---KSVAAARERVTEGRVDVLVCNAGLGLLGP--LEALG 103
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLF 174
E +++ NV+ + M Q +P M + G V+ S L+ P VY ASK
Sbjct: 104 EDA--VASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA 161
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATN 204
+ L G+ + + G V T
Sbjct: 162 LEGLCESLAVLLLPFGVHLSLIECGPVHTA 191
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 102 bits (257), Expect = 2e-26
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 25/213 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+A+A +A G D++ + D KL V + + L +
Sbjct: 16 ITGAARGQGRAHAVRMAAEGADIIAV-------DIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
VD DF + + L ++ I+V N G + P + +
Sbjct: 69 EAANRRIVAAVVD----TRDFDRLRKVVDDGVAALGRLD--IIVANAGVAAPQA--WDDI 120
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASK 172
++ + ++M NV + P ++E R G ++ ISS A + P + Y ASK
Sbjct: 121 TPED--FRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASK 178
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V+ + +E KH I V V PG V T M
Sbjct: 179 HAVTGLARAFAAELGKHSIRVNSVHPGPVNTPM 211
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 102 bits (256), Expect = 2e-26
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG++ GLGK+ A A VV+ R+KE ++ ++V EI
Sbjct: 12 ITGSSTGLGKSMAIRFATEKAKVVVNYRSKE-------------------DEANSVLEEI 52
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + + D T + KE ++ +++NN G P +
Sbjct: 53 KKV-GGEAIAVKGDVTVESDVINLVQSAIKEFGKLD--VMINNAGLENPVS--SHEMSLS 107
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQR-KGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ ++ ++ N+ + + + VE KG V+N+SS IP P+ Y ASK +
Sbjct: 108 D--WNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L EY GI V + PG + T +
Sbjct: 166 KLMTETLALEYAPKGIRVNNIGPGAINTPI 195
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 101 bits (255), Expect = 2e-26
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 33/212 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+ G+G+AYAE LA+ G A VV+ E + VA +I
Sbjct: 14 VTGSGGGIGQAYAEALAREG----------------AA----VVVADINAEAAEAVAKQI 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLA-VPE 115
+ D +DP + E GI+ LVNN FL +
Sbjct: 54 VADG-GTAISVAVDVSDPESAKAMADRTLAEFGGID--YLVNNAAIFGGMKLDFLLTIDP 110
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ Y M N+ L + V M ++ G +VN SSTAA + S YG +K+ +
Sbjct: 111 EY--YKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSN---YYGLAKVGI 165
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + L E I + + PG + T ++
Sbjct: 166 NGLTQQLSRELGGRNIRINAIAPGPIDTEANR 197
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 101 bits (253), Expect = 4e-26
Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 42/211 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEK-LDNVAAE 59
+ G + LG + + + I + + + I + E+ + +V +
Sbjct: 27 VLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHS-FTIKD-----SGEEEIKSVIEK 80
Query: 60 IRDKY-KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
I K KVD V G K
Sbjct: 81 INSKSIKVD---------------------------TFVCAAGGWSGGN-ASSDEFLKS- 111
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
++ N+ + + I + + G+ V ++AAL + + YGA+K
Sbjct: 112 -VKGMIDMNLYSAFASAHIGAKLL--NQGGLFVLTGASAALNRTSGMIAYGATKAATHHI 168
Query: 179 STDLQSEYK--KHGIIVQCVMPGYVATNMSK 207
DL SE G ++P + T ++
Sbjct: 169 IKDLASENGGLPAGSTSLGILPVTLDTPTNR 199
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 101 bits (253), Expect = 5e-26
Identities = 46/211 (21%), Positives = 75/211 (35%), Gaps = 33/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG +G+G+A AE A G D+ + A I
Sbjct: 12 ITGGANGIGRAIAERFAVEGADIAIADLVPA----------------------PEAEAAI 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R+ + D + P V + ILVNN G P F + +
Sbjct: 50 RNL-GRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD--ILVNNAGIYPLIP--FDELTFE 104
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + NV + M + +P M G ++N++ST + + Y ++K
Sbjct: 105 Q--WKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANI 162
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
F+ L S+ K GI V + P V T ++
Sbjct: 163 GFTRALASDLGKDGITVNAIAPSLVRTATTE 193
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 101 bits (253), Expect = 7e-26
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 38/219 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A+ +A G A +V +I R+ V ++
Sbjct: 19 VTGGNRGIGLAFTRAVAAAG----------------A----NVAVIYRSAADAVEVTEKV 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
++ V TK D ++ K ++ +L I L+ N G S P + +
Sbjct: 59 GKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPIS--GLIANAGVSVVKP--ATELTHE 114
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVE-QRKGVVVNISSTAALIPSPMLSV-------Y 168
+ + + NV + + C+ V ++ Q+KG +V SS ++ I + Y
Sbjct: 115 D--FAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFY 172
Query: 169 GASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+SK S L +E+ GI V + PGYV T+ +
Sbjct: 173 NSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA 211
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 99.5 bits (249), Expect = 2e-25
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 33/206 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+T A G+G+A A A+ G V+ + KL L K
Sbjct: 11 LTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYP-------------------- 50
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ V D T K E+ ++ +L N G+ + L EK+ +
Sbjct: 51 ------GIQTRVLDVTKKKQIDQFANEVERLD--VLFNVAGFVHHGT--VLDCEEKD--W 98
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI-PSPMLSVYGASKLFVSKFS 179
M+ NV ++ M + +P M+ Q+ G ++N+SS A+ + VY +K V +
Sbjct: 99 DFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLT 158
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
+ +++ + GI CV PG V T
Sbjct: 159 KSVAADFIQQGIRCNCVCPGTVDTPS 184
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 99.6 bits (249), Expect = 3e-25
Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 35/211 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLIS---RTKEKLDNV 56
ITG GLG+A + G V ++ ++ E+L L G + V + R+ +
Sbjct: 10 ITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRA 69
Query: 57 AAEIRDKY-KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPY-PERFLAVP 114
A + K+D L+ N G L
Sbjct: 70 AERCLAAFGKID---------------------------TLIPNAGIWDYSTALADLPED 102
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLF 174
+ + + +I H NV + + +P +V R G VV S A P+ +Y A+K
Sbjct: 103 KIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGPLYTATKHA 161
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V + E H + V V PG + T++
Sbjct: 162 VVGLVRQMAFELAPH-VRVNGVAPGGMNTDL 191
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 99.1 bits (248), Expect = 3e-25
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 36/212 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A A+ A + VV + +++L+ + E+
Sbjct: 12 VTGAGSGIGRAIAKKFALND----------------SI----VVAVELLEDRLNQIVQEL 51
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
R K D V+ D + + + I+ +L NN G V
Sbjct: 52 RGMGKEVLGVKAD----VSKKKDVEEFVRRTFETYSRID--VLCNNAGIMDG-VTPVAEV 104
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKL 173
++ + ++ N+ + + V+P M++Q KGV+VN +S A + + Y +K
Sbjct: 105 SDEL--WERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKH 162
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + + + Y GI V+PG V TN+
Sbjct: 163 GLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNI 194
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 99.1 bits (248), Expect = 3e-25
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 32/209 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+G + LA+ G A+ VVL + L AA +
Sbjct: 16 ITGACGGIGLETSRVLARAG----------------AR----VVLADLPETDLAGAAASV 55
Query: 61 RDK---YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ VD + + + + ++ I+ NN +S P +
Sbjct: 56 GRGAVHHVVD----LTNEVSVRALIDFTIDTFGRLD--IVDNNAAHSDPADMLVTQMTVD 109
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + N + MC+ +P ++ G +VNISS A M + Y +K +
Sbjct: 110 V--WDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIE 167
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + ++Y +HG+ + PG V T
Sbjct: 168 TLTRYVATQYGRHGVRCNAIAPGLVRTPR 196
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 98.7 bits (247), Expect = 4e-25
Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 35/231 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G+A A+ A+ G V L E + VA I
Sbjct: 11 VTGGARGIGRAIAQAFAREGALVALCDLRPEGKE---------------------VAEAI 49
Query: 61 RDK-YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
++VD + D + L ++ +LVNN + P L V E
Sbjct: 50 GGAFFQVD----LEDERERVRFVEEAAYALGRVD--VLVNNAAIAAPGS--ALTVRLPE- 100
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ ++ N+ + + + M + G +VN++S L + Y ASK +
Sbjct: 101 -WRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNL 159
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+ L + I V V PG +AT + ++ + P P
Sbjct: 160 TRSLALDLAPLRIRVNAVAPGAIATEA--VLEAIALSPDPERTRRDWEDLH 208
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 98.8 bits (247), Expect = 5e-25
Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 38/209 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ +G A L + G V++ RT+ E+
Sbjct: 32 ITGASQRVGLHCALRLLEHGHRVIISYRTEHA-----------------------SVTEL 68
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R + DF+ ++ + + + +V+N E+
Sbjct: 69 RQA---GAVALYGDFSCETGIMAFIDLLKTQTSSLR--AVVHNASEWLAETPG-----EE 118
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + +++ + P + +V+IS S Y A+K +
Sbjct: 119 ADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLE 178
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + + + V + P +
Sbjct: 179 SLTLSFAARFAPL-VKVNGIAPALLMFQP 206
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 98.0 bits (245), Expect = 8e-25
Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 30/234 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG GLG+A A LA G AK + L+ + E L+ A +
Sbjct: 18 ITGGGSGLGRATAVRLAAEG----------------AK----LSLVDVSSEGLEASKAAV 57
Query: 61 RDK-YKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+ + VAD +D + I+ NN G +
Sbjct: 58 LETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRID--GFFNNAGIEGK-QNPTESFTA 114
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
E + ++ N+ + + V+ M EQ G+VVN +S + S Y A+K V
Sbjct: 115 AE--FDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGV 172
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+ + EY ++GI + + PG + T M + +P + ++
Sbjct: 173 VGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN 226
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 98.4 bits (246), Expect = 9e-25
Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 27/213 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG G+G+++A LA+ G D+ + R + L T + L A +
Sbjct: 15 ITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLA--------TADDLAETVALV 66
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERF-LA 112
KVD V D + A E L GI+ I + N G S L
Sbjct: 67 EKTGRRCISAKVD----VKDRAALESFVAEAEDTLGGID--IAITNAGIS-----TIALL 115
Query: 113 VPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASK 172
+ + ++ N+ + V P M+++ G +V +SS + + Y +SK
Sbjct: 116 PEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSK 175
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V + + +GI V V PG + T M
Sbjct: 176 WGVIGLTKCAAHDLVGYGITVNAVAPGNIETPM 208
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 97.6 bits (244), Expect = 1e-24
Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 35/215 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG++ G+G A A A+ G V L R + +D A +
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGR-------------------KAPANIDETIASM 52
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R D AD ++ + GI+ +L+NN G R
Sbjct: 53 RAD-GGDAAFFAADLATSEACQQLVDEFVAKFGGID--VLINNAGGLVG---RKPLPEID 106
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQ-----RKGVVVNISSTAALI-PSPMLSVYGA 170
+T Y +M N+ +++ + +PH+ + V++ S A P +YGA
Sbjct: 107 DTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGA 166
Query: 171 SKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+K F+ + + K G+ V PG V T
Sbjct: 167 AKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAF 201
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 97.6 bits (244), Expect = 1e-24
Identities = 41/233 (17%), Positives = 90/233 (38%), Gaps = 37/233 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G G A+ VV+ + + + E+
Sbjct: 14 VTGGGRGIGAGIVRAFVNSG----------------AR----VVICDKDESGGRALEQEL 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I+ D T + + + ++ +VNN G+ P P+R +
Sbjct: 54 PG-----AVFILCDVTQEDDVKTLVSETIRRFGRLD--CVVNNAGHHPP-PQRPEETSAQ 105
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ ++ N++ ++ ++ +P++ + +G V+NISS I Y A+K V+
Sbjct: 106 G--FRQLLELNLLGTYTLTKLALPYL-RKSQGNVINISSLVGAIGQAQAVPYVATKGAVT 162
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+ L + +G+ V C+ PG + T + ++ + ++P P + +
Sbjct: 163 AMTKALALDESPYGVRVNCISPGNIWTPL--WEELAALMPDPRASIREGMLAQ 213
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 97.7 bits (244), Expect = 1e-24
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 44/239 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A+AE L G AK V L+ E A +
Sbjct: 12 VTGAAQGIGRAFAEALLLKG----------------AK----VALVDWNLEAGVQCKAAL 51
Query: 61 RDKYK-VDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
++++ T I D D F V ++ ILVNN G +
Sbjct: 52 HEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLD--ILVNNAGVN------------ 97
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKG---VVVNISSTAALIPSPMLSVYGASK 172
E + + N+++++S + + +M +Q G +++N+SS A L+P VY ASK
Sbjct: 98 NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASK 157
Query: 173 LFVSKF--STDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
+ F S L + G+ + + PG+V T + + + + + D I
Sbjct: 158 HGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMI 216
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 96.8 bits (242), Expect = 1e-24
Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 42/208 (20%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+GKA E L + V+ ++ +N+
Sbjct: 9 VTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA------------------ENLKF-- 48
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG---ILVNNVGYSYPYPERFLAVPEKE 117
I AD T + L I+ + N G + +
Sbjct: 49 ----------IKADLTKQ---QDITNVLDIIKNVSFDGIFLNAGILIKGS--IFDIDIES 93
Query: 118 TVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSK 177
++ NV + + + + ++ + +V S I P Y SK +++
Sbjct: 94 --IKKVLDLNVWSSIYFIKGLENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQ 149
Query: 178 FSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L + K+ I V V PG V T++
Sbjct: 150 MTKSLALDLAKYQIRVNTVCPGTVDTDL 177
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 97.3 bits (243), Expect = 2e-24
Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 32/213 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+G+A A LA G V + RT+ +++ VA EI
Sbjct: 33 ITGAGSGIGRATALALAADG----------------VT----VGALGRTRTEVEEVADEI 72
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ AD +D + + ++ I+V N G + +
Sbjct: 73 VGA-GGQAIALEADVSDELQMRNAVRDLVLKFGHLD--IVVANAGINGV-WAPIDDLKPF 128
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAAL--IPSPMLSVYGASKLF 174
E + + N+ + +P++ ++ G +V +SS +P + Y A+K
Sbjct: 129 E--WDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAA 186
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
L E KH I V V PG + TN+S
Sbjct: 187 QVAIVQQLALELGKHHIRVNAVCPGAIETNISD 219
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 96.2 bits (240), Expect = 2e-24
Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 34/207 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ G LG + V I + + + + + + +++ ++
Sbjct: 12 VYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKL 71
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
KVD ++ G K
Sbjct: 72 LGDQKVD---------------------------AILCVAGGWAGGN-AKSKSLFKN--C 101
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
+ ++ T + H+ + G++ + AAL +P + YG +K V +
Sbjct: 102 DLMWKQSIWTSTISSHLATKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQ 159
Query: 181 DLQSEYK--KHGIIVQCVMPGYVATNM 205
L + G V+P + T M
Sbjct: 160 SLAGKNSGMPSGAAAIAVLPVTLDTPM 186
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 97.2 bits (243), Expect = 2e-24
Identities = 45/209 (21%), Positives = 76/209 (36%), Gaps = 34/209 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A A LA G V+ + D A +I
Sbjct: 34 VTGAGAGIGLAVARRLADEG----------------CH----VLCADIDGDAADAAATKI 73
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+VD V+D + G++ LV N G + + +
Sbjct: 74 GCGAAACRVD----VSDEQQIIAMVDACVAAFGGVD--KLVANAGVVHLAS--LIDTTVE 125
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + ++ N+ + P M+E+ G +VN+SS A + YG SK +
Sbjct: 126 D--FDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGII 183
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ S +E + GI ++P +V T M
Sbjct: 184 QLSRITAAELRSSGIRSNTLLPAFVDTPM 212
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 97.2 bits (243), Expect = 3e-24
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 25/213 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+++A LA G D++ D A + V + E LD A +
Sbjct: 20 ITGAARGQGRSHAVRLAAEGADIIAC-------DICAPVSASVTYAPASPEDLDETARLV 72
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
D+ +D V D + + A ++ ++ ++V N G
Sbjct: 73 EDQGRKALTRVLD----VRDDAALRELVADGMEQFGRLD--VVVANAGVLSWGR----VW 122
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASK 172
+ + ++ N+ + +P M+E G +V +SS+A L +P Y ASK
Sbjct: 123 ELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASK 182
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ + L E ++GI V + P V T M
Sbjct: 183 HGLTALTNTLAIELGEYGIRVNSIHPYSVETPM 215
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 96.9 bits (242), Expect = 3e-24
Identities = 39/227 (17%), Positives = 63/227 (27%), Gaps = 41/227 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG +G + A L + G VV+ R ++ + AE+
Sbjct: 16 ITGGARRIGHSIAVRLHQQGFRVVVHYR-------------------HSEGAAQRLVAEL 56
Query: 61 RDKYKVDTKVIVADFTDP--------KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLA 112
+ D + I + + +LVNN YP P
Sbjct: 57 NAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCD--VLVNNASAYYPTPLLPGD 114
Query: 113 VPE-------KETVYHNIMHCNVITLLSMCQIVMPHMVE-----QRKGVVVNISSTAALI 160
+ + N + L + + E R VVN+ +
Sbjct: 115 DTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDL 174
Query: 161 PSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
P P VY +K + + E I V V PG +
Sbjct: 175 PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAM 221
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 96.9 bits (242), Expect = 4e-24
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G G+++A LA+ G D++ + + +D + + T E L A +
Sbjct: 16 VTGAARGQGRSHAVRLAQEGADIIAVDI----CKPIRAGVVDTAIPASTPEDLAETADLV 71
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
+ +VD V D+ K ++L ++ I+V N G +
Sbjct: 72 KGHNRRIVTAEVD----VRDYDALKAAVDSGVEQLGRLD--IIVANAGIG-NGGDTLDKT 124
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASK 172
E++ + ++ N+ + + +PHM+ R G ++ SS L P Y A+K
Sbjct: 125 SEED--WTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAK 182
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V E +H I V V P +V T M
Sbjct: 183 HGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPM 215
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 96.1 bits (240), Expect = 5e-24
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 31/212 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A LA G D+ + E + V AE+
Sbjct: 34 VTGGRRGIGLGIARALAASGFDIAITGIGDA-------------------EGVAPVIAEL 74
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ AD D V E I+ LVNN G + + FL + +
Sbjct: 75 SG-LGARVIFLRADLADLSSHQATVDAVVAEFGRID--CLVNNAGIASIVRDDFLDLKPE 131
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVE---QRKGVVVNISSTAALIPSPMLSVYGASKL 173
+ I+ N+ + Q V+ M+ + ++NI+S +A++ SP Y SK
Sbjct: 132 N--FDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKA 189
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ FS L + GI V V PG + ++M
Sbjct: 190 GLAAFSQGLALRLAETGIAVFEVRPGIIRSDM 221
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 95.7 bits (239), Expect = 7e-24
Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 30/209 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I G LG A+ A +++VL ++ + + + E+
Sbjct: 16 IAGGIKNLGALTAKTFALESVNLVLHYHQ-----------------AKDSDTANKLKDEL 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D+ + +D ++ K+F EKE ++ I +N VG P + E
Sbjct: 59 EDQ-GAKVALYQSDLSNEEEVAKLFDFAEKEFGKVD--IAINTVGKVLKKP--IVETSEA 113
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E + + N + HM G ++ I+++ + S Y +K V
Sbjct: 114 E--FDAMDTINNKVAYFFIKQAAKHM--NPNGHIITIATSLLAAYTGFYSTYAGNKAPVE 169
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ E K I V + PG + T+
Sbjct: 170 HYTRAASKELMKQQISVNAIAPGPMDTSF 198
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 96.2 bits (240), Expect = 9e-24
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+ +A LA+ G D+V I +L + ++ + E+L +
Sbjct: 51 ITGAARGQGRTHAVRLAQDGADIVAI--------DLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 61 RDK------YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LA 112
++ + D V D + E I+ ILV+NVG S
Sbjct: 103 EEQGRRIIARQAD----VRDLASLQAVVDEALAEFGHID--ILVSNVGIS-----NQGEV 151
Query: 113 VPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGAS 171
V + + +I+ N+I C+ V+P M+E+ + G V+ +SST L +P S Y AS
Sbjct: 152 VSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAAS 211
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
K V L +E +H I V V PG V T M
Sbjct: 212 KHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM 245
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 94.3 bits (235), Expect = 1e-23
Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 34/207 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ G LG A E K G V+ I + + L + ++ + A
Sbjct: 8 VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASS 67
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+VD + G +
Sbjct: 68 LQGSQVD---------------------------GVFCVAGGWAGGSASSKDFVK---NA 97
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
++ +V + ++ H+ + G++ + AA+ P+P + YG +K V ++
Sbjct: 98 DLMIKQSVWSSAIAAKLATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTS 155
Query: 181 DLQSEYK--KHGIIVQCVMPGYVATNM 205
L ++ V +MP + T M
Sbjct: 156 SLAAKDSGLPDNSAVLTIMPVTLDTPM 182
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 94.9 bits (237), Expect = 1e-23
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G A A LA G VV + + + VA +I
Sbjct: 32 VTGASRGIGAAIAARLASDGFTVV-------------------INYAGKAAAAEEVAGKI 72
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVG-YSYPYPERFLAVPE 115
AD +DP ++FA E+ G++ +LVNN G
Sbjct: 73 EAA-GGKALTAQADVSDPAAVRRLFATAEEAFGGVD--VLVNNAGIMPLTTIAET----- 124
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ V+ ++ N+ + + + + G ++N+S++ + P +Y A+K V
Sbjct: 125 GDAVFDRVIAVNLKGTFNTLREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAKAGV 182
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E + I V V PG AT++
Sbjct: 183 EAMTHVLSKELRGRDITVNAVAPGPTATDL 212
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 94.1 bits (235), Expect = 2e-23
Identities = 55/209 (26%), Positives = 77/209 (36%), Gaps = 34/209 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG GLG A G A+ VVL E+ A E+
Sbjct: 10 ITGGARGLGAEAARQAVAAG----------------AR----VVLADVLDEEGAATAREL 49
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D +D V D ++ A+ +E ++ LVNN G S +
Sbjct: 50 GDAARYQHLD----VTIEEDWQRVVAYAREEFGSVD--GLVNNAGISTGMF--LETESVE 101
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ ++ N+ + + V+P M + G +VNISS A L+ + S YGASK V
Sbjct: 102 R--FRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVR 159
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
S E I V V PG T M
Sbjct: 160 GLSKLAAVELGTDRIRVNSVHPGMTYTPM 188
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 93.4 bits (233), Expect = 3e-23
Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 37/209 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A A + G V + ++ A E+
Sbjct: 12 VTGAGKGIGYATALAFVEAGAKVTGFDQAFT-------------------QEQYPFATEV 52
Query: 61 RDKYKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPEKET 118
D VAD ++ + E ++ LVN G R +
Sbjct: 53 MD---------VADAAQVAQVCQRLLAETERLD--ALVNAAGIL-----RMGATDQLSKE 96
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ NV ++ Q M QR G +V ++S AA P +S YGASK +
Sbjct: 97 DWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSL 156
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + E G+ V PG T+M +
Sbjct: 157 ALSVGLELAGSGVRCNVVSPGSTDTDMQR 185
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 93.3 bits (233), Expect = 4e-23
Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 34/209 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
++G G+G ++ + G AK VV E+ +AAE+
Sbjct: 12 VSGGARGMGASHVRAMVAEG----------------AK----VVFGDILDEEGKAMAAEL 51
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
D +D V G+ +LVNN G
Sbjct: 52 ADAARYVHLD----VTQPAQWKAAVDTAVTAFGGLH--VLVNNAGILNIGT--IEDYALT 103
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
E + I+ N+ + + V+ M E +G ++NISS L + Y A+K V
Sbjct: 104 E--WQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVR 161
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ E GI V + PG V T M
Sbjct: 162 GLTKSTALELGPSGIRVNSIHPGLVKTPM 190
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 93.4 bits (233), Expect = 4e-23
Identities = 45/210 (21%), Positives = 72/210 (34%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG T G+G+ A A+ G +V + R+ +D A++
Sbjct: 15 VTGGTKGIGRGIAT--------------------VFARAGANVAVAGRSTADIDACVADL 54
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D +D + +E GI+ ++ N G +P+
Sbjct: 55 DQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGID--VVCANAGV---FPDA-PLATMT 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISS-TAALIPSPMLSVYGASKLFV 175
+ I NV Q + ++ G VV SS T + P S YGA+K
Sbjct: 109 PEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQ 168
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F E H I V +MPG + T
Sbjct: 169 LGFMRTAAIELAPHKITVNAIMPGNIMTEG 198
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 93.8 bits (234), Expect = 4e-23
Identities = 51/212 (24%), Positives = 77/212 (36%), Gaps = 35/212 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A A LA GI V +R + + +
Sbjct: 29 VTGVSSGIGLAVAR--------------------TLAARGIAVYGCARDAKNVSAAVDGL 68
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPE 115
R D D T A + I ILVN+ G +
Sbjct: 69 RAA-GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIG--ILVNSAGRN-----GGGETADL 120
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPH--MVEQRKGVVVNISSTAALIPSPMLSVYGASKL 173
+ ++ +++ N+ + + + V+ M E G +VNI+ST + Y ASK
Sbjct: 121 DDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKH 180
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V F+ + E K GI V V PGYV T M
Sbjct: 181 GVVGFTKSVGFELAKTGITVNAVCPGYVETPM 212
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 93.4 bits (233), Expect = 5e-23
Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 31/212 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+A A A+ G AK VV+ +R L + EI
Sbjct: 13 VTGASSGIGRAAALLFAREG----------------AK----VVVTARNGNALAELTDEI 52
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + D D + + G++ NN G ++ +
Sbjct: 53 AGG-GGEAAALAGDVGDEALHEALVELAVRRFGGLD--TAFNNAGALGA-MGEISSLSVE 108
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA-LIPSPMLSVYGASKLFV 175
+ + N+ + + +P + G + SS ++ Y ASK +
Sbjct: 109 G--WRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGL 166
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
L E GI V ++PG T +
Sbjct: 167 IGLVQALAVELGARGIRVNALLPGGTDTPANF 198
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 93.4 bits (233), Expect = 8e-23
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 25/213 (11%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+++A LA+ G D++ I ++ K V L T + L ++
Sbjct: 33 ITGAARGQGRSHAITLAREGADIIAI--------DVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
+VD V DF + +L ++ I++ N + R +
Sbjct: 85 EALGRRIIASQVD----VRDFDAMQAAVDDGVTQLGRLD--IVLANAALA-SEGTRLNRM 137
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVE-QRKGVVVNISSTAALIPSPMLSVYGASK 172
K + +++ N+ ++ +PH++ +R G +V SS L + + Y ASK
Sbjct: 138 DPKT--WRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASK 195
Query: 173 LFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + E I V V P VAT M
Sbjct: 196 HGLHGLMRTMALELGPRNIRVNIVCPSSVATPM 228
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 93.1 bits (232), Expect = 1e-22
Identities = 43/226 (19%), Positives = 68/226 (30%), Gaps = 41/226 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA +G+A A L + G VV+ E ++A E+
Sbjct: 28 VTGAAKRIGRAIAVKLHQTGYRVVIHYHNSA-------------------EAAVSLADEL 68
Query: 61 RDKYKVDTKVIVADFTDP--------KIFAHVEKELTGIEAGILVNNVGYSYPYP----- 107
+ V AD T+ +I + + +LVNN YP P
Sbjct: 69 NKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCD--VLVNNASAFYPTPLVQGD 126
Query: 108 -ERFLAVPEKETVYHNIMHCNVITLLSMCQIVMPHM------VEQRKGVVVNISSTAALI 160
E ET ++ N I + +VN+
Sbjct: 127 HEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
Query: 161 PSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
P S+Y K + + E +GI V V PG ++
Sbjct: 187 PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVA 232
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 92.2 bits (230), Expect = 1e-22
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 35/212 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG T G+G A A + G AK V++ R + + A +
Sbjct: 11 ITGGTLGIGLAIATKFVEEG----------------AK----VMITGRHSDVGEKAAKSV 50
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
++ + D +D K+F EK + LVNN G +
Sbjct: 51 GTPDQI--QFFQHDSSDEDGWTKLFDATEKAFGPVS--TLVNNAGIAVNKS--VEETTTA 104
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKG-VVVNISSTAALIPSPMLSVYGASKLFV 175
E + ++ N+ + ++ + M + G ++N+SS + P L Y ASK V
Sbjct: 105 E--WRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAV 162
Query: 176 SKFSTDLQSEY--KKHGIIVQCVMPGYVATNM 205
S + K + + V V PGY+ T +
Sbjct: 163 RIMSKSAALDCALKDYDVRVNTVHPGYIKTPL 194
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 91.5 bits (228), Expect = 2e-22
Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 42/211 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G VV SR+ + +A+
Sbjct: 33 ITGASQGIGAGLVRAYRDRNYRVVATSRSIKP------------------------SADP 68
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D + P +I + I+ LVNN G P F+ + ++
Sbjct: 69 D------IHTVAGDISKPETADRIVREGIERFGRID--SLVNNAGVFLAKP--FVEMTQE 118
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSP--MLSVYGASKLF 174
+ Y + + NV + Q M++Q G +V+I+++ P ++ +K
Sbjct: 119 D--YDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGG 176
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ + L E+ + G+ V V PG + T M
Sbjct: 177 LNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM 207
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 91.8 bits (229), Expect = 2e-22
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 36/206 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A + L + G AK VV +S ++ NV+
Sbjct: 19 VTGGSSGIGLAVVDALVRYG----------------AK----VVSVSLDEKSDVNVSDHF 58
Query: 61 RDKYKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
+ +D V + + K K+ I+ ILVNN G P P +
Sbjct: 59 K----ID----VTNEEEVKEAVEKTTKKYGRID--ILVNNAGIEQYSP--LHLTPTEI-- 104
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ I+ NV M + +P M+ G ++NI+S + + + Y SK + +
Sbjct: 105 WRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLT 164
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
+ +Y I V PG + T M
Sbjct: 165 RSVAIDYAP-KIRCNAVCPGTIMTPM 189
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 91.9 bits (229), Expect = 2e-22
Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 35/233 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
TGA G+G+ A L + G V VV + + + V AE+
Sbjct: 26 TTGAGRGIGRGIAIELGRRGASV-------------------VVNYGSSSKAAEEVVAEL 66
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVG-YSYPYPERFLAVPE 115
+ I AD + P +F G++ +++N G +
Sbjct: 67 KKL-GAQGVAIQADISKPSEVVALFDKAVSHFGGLD--FVMSNSGMEVWCDELEV----- 118
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA-LIPSPMLSVYGASKLF 174
+ ++ + + N + Q + H +R G ++ SS AA + P ++Y SK
Sbjct: 119 TQELFDKVFNLNTRGQFFVAQQGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSKAA 176
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALK 227
V F + G+ V C+ PG V T+M + +
Sbjct: 177 VEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKID 229
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 92.2 bits (230), Expect = 2e-22
Identities = 50/236 (21%), Positives = 82/236 (34%), Gaps = 40/236 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G+A A A+ G DV + E+ D A V A I
Sbjct: 54 VTGGDSGIGRAAAIAYAREGADVAINYLPAEEED--A----------------QQVKALI 95
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ ++ D +D + + L G++ IL G P + +
Sbjct: 96 E-ECGRKAVLLPGDLSDESFARSLVHKAREALGGLD--ILALVAGKQTAIP-EIKDLTSE 151
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + NV L + Q +P + + ++ SS A PSP L Y A+K +
Sbjct: 152 Q--FQQTFAVNVFALFWITQEAIPLL--PKGASIITTSSIQAYQPSPHLLDYAATKAAIL 207
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTIGIQ 232
+S L + + GI V V PG + T + + G Q
Sbjct: 208 NYSRGLAKQVAEKGIRVNIVAPGPIWTALQ----------ISGGQTQDKIPQFGQQ 253
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 91.1 bits (227), Expect = 4e-22
Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 39/216 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A A+ G V V + +E D V A I
Sbjct: 31 VTGGSRGIGAAVCRLAARQGWRVG-------------------VNYAANREAADAVVAAI 71
Query: 61 RDK------YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
+ D V + D +F+ V+++ ++ LVNN G YP+R +
Sbjct: 72 TESGGEAVAIPGD----VGNAADIAAMFSAVDRQFGRLD--GLVNNAGI-VDYPQRVDEM 124
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRK---GVVVNISSTAALIPSP-MLSVYG 169
++ NV + + M G +VN+SS AA++ S Y
Sbjct: 125 --SVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYA 182
Query: 170 ASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
ASK + F+ L E GI V V PG + T++
Sbjct: 183 ASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDL 218
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 90.7 bits (226), Expect = 6e-22
Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 35/211 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG + G+G A A+ LA G V + E+ V +EI
Sbjct: 36 VTGGSRGIGAAIAKRLALEGAAVA-------------------LTYVNAAERAQAVVSEI 76
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYP-ERFLAVPE 115
I AD D + + L G++ ILVN+ G + P E
Sbjct: 77 EQA-GGRAVAIRADNRDAEAIEQAIRETVEALGGLD--ILVNSAGIWHSAPLEET----- 128
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISST-AALIPSPMLSVYGASKLF 174
+ +M N + H+ G ++ I S A L+P P +S+Y ASK
Sbjct: 129 TVADFDEVMAVNFRAPFVAIRSASRHL--GDGGRIITIGSNLAELVPWPGISLYSASKAA 186
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
++ + L + GI V V PG T+M
Sbjct: 187 LAGLTKGLARDLGPRGITVNIVHPGSTDTDM 217
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 90.7 bits (226), Expect = 7e-22
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 33/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG G+G+ A+ + G AK VV+ + V I
Sbjct: 21 ITGGAGGIGETTAKLFVRYG----------------AK----VVIADIADDHGQKVCNNI 60
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEK--ELTGIEAG---ILVNNVGYSYPYPERFLAVPE 115
+ + D T V + T + G I+ NVG P L
Sbjct: 61 GSPDVISF--VHCDVTKD---EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGN 115
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLS-VYGASKLF 174
++ + +M NV + + M+ +KG +V +S ++ +S VY A+K
Sbjct: 116 ED--FKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHA 173
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V +T L +E ++GI V CV P VA+ +
Sbjct: 174 VLGLTTSLCTELGEYGIRVNCVSPYIVASPL 204
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 89.5 bits (223), Expect = 1e-21
Identities = 46/210 (21%), Positives = 71/210 (33%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GA +G+A A A+ G +V V+ + E AEI
Sbjct: 13 VAGAGRDIGRACAIRFAQEGANV-------------------VLTYNGAAEGAATAVAEI 53
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
I AD T+ + + I LV+ G + + E
Sbjct: 54 EKL-GRSALAIKADLTNAAEVEAAISAAADKFGEIH--GLVHVAGGLIAR-KTIAEMDEA 109
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI-PSPMLSVYGASKLFV 175
+H ++ N+ +L + +P M + G +V SS A P Y SK V
Sbjct: 110 F--WHQVLDVNLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGPGALAYATSKGAV 165
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ L E I V V PG ++T
Sbjct: 166 MTFTRGLAKEVGP-KIRVNAVCPGMISTTF 194
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 88.8 bits (221), Expect = 2e-21
Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 35/235 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+ G+G A A L +LG V VV + + + + V +EI
Sbjct: 23 VTGSGRGIGAAVAVHLGRLGAKV-------------------VVNYANSTKDAEKVVSEI 63
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVG-YSYPYPERFLAVPE 115
+ D I AD K+F ++ I V+N G S+ + +
Sbjct: 64 KAL-GSDAIAIKADIRQVPEIVKLFDQAVAHFGHLD--IAVSNSGVVSFGHLKDV----- 115
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA-LIPSPMLSVYGASKLF 174
E + + N + + H+ G +V SS + P S+Y SK
Sbjct: 116 TEEEFDRVFSLNTRGQFFVAREAYRHL--TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGA 173
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTI 229
V F + I V V PG T+M ++ + + +
Sbjct: 174 VDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMA 228
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 89.2 bits (222), Expect = 2e-21
Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 35/211 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+ A L + G V +V + + E + V A I
Sbjct: 34 VTGAGRGIGREMAMELGRRGCKV-------------------IVNYANSTESAEEVVAAI 74
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVG-YSYPYPERFLAVPE 115
+ D + A+ ++F K ++ I+ +N G S+ + +
Sbjct: 75 KKN-GSDAACVKANVGVVEDIVRMFEEAVKIFGKLD--IVCSNSGVVSFGHVKDV----- 126
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI-PSPMLSVYGASKLF 174
+ + N + + H+ + G ++ + S P +VY SK
Sbjct: 127 TPEEFDRVFTINTRGQFFVAREAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSKGA 184
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ F+ + + I V V PG + T+M
Sbjct: 185 IETFARCMAIDMADKKITVNVVAPGGIKTDM 215
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 88.8 bits (221), Expect = 3e-21
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 34/217 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G G+A+A LA G D++ + D L V T E+L +
Sbjct: 18 ITGAARGQGRAHAVRLAADGADIIAV-------D-LCDQIASVPYPLATPEELAATVKLV 69
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
D + D V D EL ++ I+V N G +
Sbjct: 70 EDIGSRIVARQAD----VRDRESLSAALQAGLDELGRLD--IVVANAG--------IAPM 115
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRK-GVVVNISSTAALI----PSPMLSVY 168
+ +H+++ N+ + ++ +P +V+Q G +V ISS+A L P Y
Sbjct: 116 SAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGY 175
Query: 169 GASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
A+K V + I V + P V T M
Sbjct: 176 VAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPM 212
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 88.8 bits (221), Expect = 4e-21
Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 40/223 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G G+++A LA+ G D++L D + T L+ E+
Sbjct: 15 VTGGARGQGRSHAVKLAEEGADIILF-------D-ICHDIETNEYPLATSRDLEEAGLEV 66
Query: 61 RDK------YKVDTKVIVADFTDPK-IFAHVEKELTGIEAGILVNNVGYSYPYPERFLAV 113
+VD V D A+ E ++ ++V N G
Sbjct: 67 EKTGRKAYTAEVD----VRDRAAVSRELANAVAEFGKLD--VVVANAGICPLGAH----- 115
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALI-----------PS 162
+ + + + +++ +P++ ++ S A LI
Sbjct: 116 -LPVQAFADAFDVDFVGVINTVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQG 172
Query: 163 PMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
P + Y +K V ++ L ++ I + P V T+M
Sbjct: 173 PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDM 215
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 88.0 bits (219), Expect = 5e-21
Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 32/211 (15%)
Query: 1 ITGATD-GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+T A G+G A G A VV+ + +L +
Sbjct: 27 VTAAAGTGIGSTTARRALLEG----------------AD----VVISDYHERRLGETRDQ 66
Query: 60 IRDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+ D + +V D T + ++ ++ +LVNN G P + + +
Sbjct: 67 LADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLD--VLVNNAGLGGQTP--VVDMTD 122
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQ-RKGVVVNISSTAALIPSPMLSVYGASKLF 174
+E + +++ + +++ + + + GV+VN +S S Y A+K
Sbjct: 123 EE--WDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAG 180
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V + E + G+ + V P
Sbjct: 181 VMALTRCSAIEAVEFGVRINAVSPSIARHKF 211
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 87.6 bits (218), Expect = 6e-21
Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 36/214 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+A A+ LA G V + + KE+ + EI
Sbjct: 12 VTGASRGIGRAIAKRLANDGALVAI---------HYG----------NRKEEAEETVYEI 52
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAG----ILVNNVGYSYPYP-ERFL 111
+ I A+ +++ ++ EL IL+NN G E
Sbjct: 53 QSN-GGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEET- 110
Query: 112 AVPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGAS 171
E + ++ N + Q + + + ++NISS A I P Y +
Sbjct: 111 ----TEQFFDRMVSVNAKAPFFIIQQALSRL--RDNSRIINISSAATRISLPDFIAYSMT 164
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
K ++ + L + GI V ++PG+V T+M
Sbjct: 165 KGAINTMTFTLAKQLGARGITVNAILPGFVKTDM 198
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 87.6 bits (218), Expect = 7e-21
Identities = 43/207 (20%), Positives = 71/207 (34%), Gaps = 39/207 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEK-LDNVAAE 59
+TGA+ G+G+A AE G V+ +S + DV T +
Sbjct: 13 VTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDV-----TNPDQVKASIDH 67
Query: 60 IRDKY-KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
I +Y + +LVNN G ++ E
Sbjct: 68 IFKEYGSIS---------------------------VLVNNAGIESYGK--IESMSMGE- 97
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ I+ N+ + +P+M+ R +VNISS A I + S Y SK V
Sbjct: 98 -WRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGL 156
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + +Y + V P + T +
Sbjct: 157 TKSIALDYAP-LLRCNAVCPATIDTPL 182
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 87.7 bits (218), Expect = 1e-20
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 33/211 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG T G+G+ A A+ G +V + +R+ +L +V AE+
Sbjct: 46 VTGGTKGIGRGIAT--------------------VFARAGANVAVAARSPRELSSVTAEL 85
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPE 115
+ + + D +DP V ++ ++ N G
Sbjct: 86 GELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALD--VVCANAGIF-----PEARLDTM 138
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISS-TAALIPSPMLSVYGASKLF 174
++ NV + Q + + +G V+ SS T + P S YGASK
Sbjct: 139 TPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAA 198
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F E G+ V ++PG + T
Sbjct: 199 QLGFMRTAAIELAPRGVTVNAILPGNILTEG 229
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 86.0 bits (214), Expect = 2e-20
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 37/213 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+GKA A LA G V++ E A
Sbjct: 11 VTGAAQGIGKAIAARLAADGATVIVSDINAEG------------------------AKAA 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPE 115
+ I AD +DP +FA ++ GI+ ILVNN F
Sbjct: 47 AASIGKKARAIAADISDPGSVKALFAEIQALTGGID--ILVNNASIV-----PFVAWDDV 99
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRK-GVVVNISSTAALIPSPMLSVYGASKLF 174
+ I+ N+ + + M K G V++I+S +P ++ Y A+K
Sbjct: 100 DLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGG 159
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
V F+ L +E K+ I V PG + ++ K
Sbjct: 160 VIGFTRALATELGKYNITANAVTPGLIESDGVK 192
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 86.0 bits (214), Expect = 2e-20
Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 33/207 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+GK + G V I +++ + AK ++
Sbjct: 7 VTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFY--------------- 51
Query: 61 RDKYKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPEKET 118
+ D VAD K + ++L I+ +LVNN +
Sbjct: 52 ---FHGD----VADPLTLKKFVEYAMEKLQRID--VLVNNACRG-----SKGILSSLLYE 97
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ I+ + + ++ +++ + G ++NI+ST A P Y ++K +
Sbjct: 98 EFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEPDSEAYASAKGGIVAL 156
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L ++V C+ PG++
Sbjct: 157 THALAMSLGP-DVLVNCIAPGWINVTE 182
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 86.2 bits (214), Expect = 2e-20
Identities = 42/227 (18%), Positives = 72/227 (31%), Gaps = 45/227 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLI--SRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+TGA G+G + L K +I +R EK L + V + L
Sbjct: 8 VTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHV----LPLT---- 59
Query: 59 EIRDKYKVDTKVIVADFTDPKIFA-HVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKE 117
V F V + + +L+NN G Y
Sbjct: 60 -------------VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYG-TNTEPNRAV 105
Query: 118 TVYHNIMHCNVITLLSMCQIVMPHM-----------VEQRKGVVVNISSTAALI------ 160
+ N +++ + Q ++P + + + V+ ISS I
Sbjct: 106 --IAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSG 163
Query: 161 -PSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
+ Y SK ++ F L + K ++V PG+V TN+
Sbjct: 164 SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 86.5 bits (215), Expect = 2e-20
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 35/212 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGAT G+G A L K G+ V + +R +E L E+
Sbjct: 27 VTGATSGIGLEIAR--------------------RLGKEGLRVFVCARGEEGLRTTLKEL 66
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERF-LAVPE 115
R+ V+ D + A V + ++ +LVNN G
Sbjct: 67 REA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVD--VLVNNAGRP-----GGGATAEL 118
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPH--MVEQRKGVVVNISSTAALIPSPMLSVYGASKL 173
+ ++ +++ N+ + + + V+ M+E+ G +VNI+ST + Y ASK
Sbjct: 119 ADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKH 178
Query: 174 FVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V F+ L E + GI V V PG+V T M
Sbjct: 179 GVVGFTKALGLELARTGITVNAVCPGFVETPM 210
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 85.1 bits (211), Expect = 6e-20
Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 46/228 (20%)
Query: 1 ITGATDGLGKAYAEGLAKL---GIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVA 57
ITG GLG + L L + R +E+ L L + N+
Sbjct: 26 ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDL----------AKNHSNI- 74
Query: 58 AEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG----ILVNNVGYSYPYPERFLAV 113
++ D + + + ++ G+ +L NN G + R AV
Sbjct: 75 -----------HILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKS-ARITAV 122
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHM-----------VEQRKGVVVNISSTAALI-- 160
+E + + N + + + + +P + + + ++N+SS I
Sbjct: 123 RSQELLDT--LQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQG 180
Query: 161 -PSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ Y SK ++ + L + I+ + PG+V T+M
Sbjct: 181 NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG 228
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 85.1 bits (211), Expect = 8e-20
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 58/240 (24%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA LG++ AEGL G V L R+ + + ++A +
Sbjct: 14 VTGAAKRLGRSIAEGLHAEGYAVCLHYH-------------------RSAAEANALSATL 54
Query: 61 RDKYKVDTKVIVADFTDP---------------------KIFAHVEKELTGIEAGILVNN 99
+ + AD ++ ++ A + +LVNN
Sbjct: 55 NARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCD--VLVNN 112
Query: 100 VGYSYPYP----------ERFLAVPEKETVYHNIMHCNVITLLSMCQIVMPHMVE----- 144
YP P ET ++ N I + + +
Sbjct: 113 ASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKH 172
Query: 145 -QRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVAT 203
++N+ P ++Y +K + + E I V V PG
Sbjct: 173 RGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 232
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 85.6 bits (212), Expect = 1e-19
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 58/240 (24%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA LG++ AEGL G V L R+ + + ++A +
Sbjct: 51 VTGAAKRLGRSIAEGLHAEGYAVCLHYH-------------------RSAAEANALSATL 91
Query: 61 RDKYKVDTKVIVADFTDP---------------------KIFAHVEKELTGIEAGILVNN 99
+ + AD ++ ++ A + +LVNN
Sbjct: 92 NARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCD--VLVNN 149
Query: 100 VGYSYPYP----------ERFLAVPEKETVYHNIMHCNVITLLSMCQIVMPHMVE----- 144
YP P ET ++ N I + + +
Sbjct: 150 ASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKH 209
Query: 145 -QRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVAT 203
++N+ P ++Y +K + + E I V V PG
Sbjct: 210 RGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 269
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 83.8 bits (208), Expect = 1e-19
Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 22/208 (10%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLD-NLAKLGIDVVLISRTKEKLDNVAAE 59
ITG+ G+G A E LA+ G V+ I R + ++ +L+ G ++ ++ V
Sbjct: 6 ITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV--- 62
Query: 60 IRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
+D V A V +G+ + VN G S LA
Sbjct: 63 ------LDGLVCCA-------GVGVTAANSGLV--VAVNYFGVSAL--LDGLAEALSRGQ 105
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ I +P + G A Y SK V+ +
Sbjct: 106 QPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAVTCLA 164
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNMSK 207
++ G+ + V PG V T + +
Sbjct: 165 RRNVVDWAGRGVRLNVVAPGAVETPLLQ 192
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 85.1 bits (211), Expect = 1e-19
Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA GLG+AYA A+ G VV+ N LG D + + D V EI
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVVV---------N--DLGGDFKGVGKGSSAADKVVEEI 62
Query: 61 RDKYKVDTKVIVADFTD----PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R + VA++ K+ I+ ++VNN G F + ++
Sbjct: 63 RRRGGK----AVANYDSVEAGEKLVKTALDTFGRID--VVVNNAGILRD--RSFSRISDE 114
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + I ++ + + HM +Q G ++ +S + + + + Y A+KL +
Sbjct: 115 D--WDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLL 172
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E +K+ I + P + M
Sbjct: 173 GLANTLVIEGRKNNIHCNTIAPN-AGSRM 200
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 83.7 bits (208), Expect = 2e-19
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G+A A LA+ G + + EK + VA E
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNR-------------------EKAEEVAEEA 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
R + V+ A+ + + + L G++ LVNN G + R L V
Sbjct: 47 RRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLD--TLVNNAGIT-----RDTLLVRM 99
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K+ + ++ N+ + + + M++ R G +VNI+S ++ +P + Y ASK +
Sbjct: 100 KDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGL 159
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ + EY + GI V V PG++ T M
Sbjct: 160 IGFTRAVAKEYAQRGITVNAVAPGFIETEM 189
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 83.3 bits (207), Expect = 2e-19
Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G + L G AK V + +AAE+
Sbjct: 11 VTGGASGVGLEVVKLLLGEG----------------AK----VAFSDINEAAGQQLAAEL 50
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + + D + + A V++ L + +LVNN G P +
Sbjct: 51 GE----RSMFVRHDVSSEADWTLVMAAVQRRLGTLN--VLVNNAGILLPGD--METGRLE 102
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ + ++ N ++ CQ + M E G ++N++S ++ +P + Y ASK VS
Sbjct: 103 D--FSRLLKINTESVFIGCQQGIAAMKET-GGSIINMASVSSWLPIEQYAGYSASKAAVS 159
Query: 177 KFSTDLQSEYKKHGIIVQC--VMPGYVATNM 205
+ +K G ++ + P + T M
Sbjct: 160 ALTRAAALSCRKQGYAIRVNSIHPDGIYTPM 190
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 82.9 bits (206), Expect = 2e-19
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G A LA G VV + ++ + +
Sbjct: 10 VTGASRGIGFEVAH--------------------ALASKGATVVGTATSQASAEKFENSM 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
++K + +V + +D FA ++ E I+ ILVNN G + R L +
Sbjct: 50 KEKG-FKARGLVLNISDIESIQNFFAEIKAENLAID--ILVNNAGIT-----RDNLMMRM 101
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
E + ++++ N+ ++ M + + M+++R G +++I S +P + Y A+K V
Sbjct: 102 SEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGV 161
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
FS L E I V V PG++AT+M
Sbjct: 162 IGFSKSLAYEVASRNITVNVVAPGFIATDM 191
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 83.4 bits (207), Expect = 4e-19
Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG G+G+A + AK G ++ I+ E+ + +
Sbjct: 52 ITGGDSGIGRAVSIAFAKEGANIA-IAYLDEE------------------GDANETKQYV 92
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
K V ++ D +D I ++L + ILVNNV YP + + +
Sbjct: 93 E-KEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLN--ILVNNVAQQYPQ-QGLEYITAE 148
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ N+ + + + + H+ ++ V++N +S A + L Y A+K +
Sbjct: 149 Q--LEKTFRINIFSYFHVTKAALSHL--KQGDVIINTASIVAYEGNETLIDYSATKGAIV 204
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKTIG 230
F+ L + GI V V PG + T + P++F + + G
Sbjct: 205 AFTRSLSQSLVQKGIRVNGVAPGPIWTPL-----------IPSSFDEKKVSQFG 247
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 81.5 bits (202), Expect = 4e-19
Identities = 25/207 (12%), Positives = 62/207 (29%), Gaps = 48/207 (23%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GA+ LG A E L K +V+ R
Sbjct: 8 LIGASGTLGSAVKERLEKKA---------------------EVITAGRHSGD-------- 38
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ D T+ + +++ ++ +V+ G + P + ++
Sbjct: 39 ----------VTVDITNIDSIKKMYEQVGKVD--AIVSATGSATFSP--LTELTPEK--N 82
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFST 180
+ + +++ + + + ++ G + P + + V+ F+
Sbjct: 83 AVTISSKLGGQINLVLLGIDSLNDK--GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAK 140
Query: 181 DLQSEYKKHGIIVQCVMPGYVATNMSK 207
E + GI + V P + + K
Sbjct: 141 SAAIEMPR-GIRINTVSPNVLEESWDK 166
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 82.6 bits (205), Expect = 4e-19
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+A A LA+ G V+ + T+ + + A
Sbjct: 33 VTGASRGIGRAIAL--------------------ELARRGAMVIGTATTEAGAEGIGAAF 72
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ ++ + V + D + KE + +LVNN G + + LA+
Sbjct: 73 KQ-AGLEGRGAVLNVNDATAVDALVESTLKEFGALN--VLVNNAGIT-----QDQLAMRM 124
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K+ + ++ N+ + + + V+ M++ R G +VNI+S +P Y A+K V
Sbjct: 125 KDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGV 184
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + L E GI V CV PG++ T+M
Sbjct: 185 AGMTRALAREIGSRGITVNCVAPGFIDTDM 214
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 82.2 bits (204), Expect = 5e-19
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 36/210 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+GKA AE LA+ G V+ + ++ A I
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVIGTATSESG------------------------AQAI 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
D + K + + T+P + + E G++ ILVNN G + R L +
Sbjct: 50 SDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVD--ILVNNAGIT-----RDNLLMRM 102
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
KE + +IM N+ ++ + + V+ M+++R+G ++N+ S + + + Y A+K V
Sbjct: 103 KEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGV 162
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ + E G+ V V PG++ T+M
Sbjct: 163 IGFTKSMAREVASRGVTVNTVAPGFIETDM 192
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 84.4 bits (209), Expect = 6e-19
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA GLGK Y+ AKLG VV+ N LG + + D V EI
Sbjct: 13 ITGAGGGLGKYYSLEFAKLGAKVVV---------N--DLGGALNGQGGNSKAADVVVDEI 61
Query: 61 RDKYKVDTKVIVADFTD----PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
V VAD+ + KI K + +++NN G + EK
Sbjct: 62 VKN----GGVAVADYNNVLDGDKIVETAVKNFGTVH--VIINNAGILRDAS--MKKMTEK 113
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ Y ++ ++ ++ + P+ +Q+ G +VN SS A L + + Y ++K +
Sbjct: 114 D--YKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALL 171
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
F+ L E K+ I + P + M+
Sbjct: 172 GFAETLAKEGAKYNIKANAIAPL-ARSRMT 200
Score = 75.5 bits (186), Expect = 8e-16
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 32/209 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA GLGK YA+ AK G VV+ N D + EI
Sbjct: 327 ITGAGAGLGKEYAKWFAKYGAKVVV---------N------DF-------KDATKTVDEI 364
Query: 61 RDKY--KVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
+ + VA ++ I +V + I+ ILVNN G F + ++E
Sbjct: 365 KAAGGEAWPDQHDVAKDSE-AIIKNVIDKYGTID--ILVNNAGILRDRS--FAKMSKQE- 418
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ ++ ++I ++ ++ P+ VE++ G ++NI+ST+ + + + Y +SK +
Sbjct: 419 -WDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGL 477
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNMSK 207
S + E K+ I V V P T M+
Sbjct: 478 SKTMAIEGAKNNIKVNIVAPH-AETAMTL 505
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 81.8 bits (203), Expect = 7e-19
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G++ A LA+ G +V + + EK + V EI
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSK-------------------EKAEAVVEEI 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ VD+ I A+ D + V + ++ +LVNN G + R L +
Sbjct: 50 KA-KGVDSFAIQANVADADEVKAMIKEVVSQFGSLD--VLVNNAGIT-----RDNLLMRM 101
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
KE + +++ N+ + + Q P M+ QR G ++N+SS + +P + Y A+K V
Sbjct: 102 KEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGV 161
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ E GI V V PG++ ++M
Sbjct: 162 IGLTKSAARELASRGITVNAVAPGFIVSDM 191
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 81.8 bits (203), Expect = 7e-19
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG++ GLGKA A L +G ++VL LD A E
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPAS-------------------TSLDATAEEF 50
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ ++ V D +P + I+ ILVNN G + R L +
Sbjct: 51 KA-AGINVVVAKGDVKNPEDVENMVKTAMDAFGRID--ILVNNAGIT-----RDTLMLKM 102
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
E + ++++ N+ + + V M++Q+ G ++NI+S A +I + + Y ASK +
Sbjct: 103 SEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGL 162
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ + E+ GI V PG + T+M
Sbjct: 163 IGFTKSIAKEFAAKGIYCNAVAPGIIKTDM 192
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 82.6 bits (205), Expect = 7e-19
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+ A+ LAK V+ ISRT++ D+V EI
Sbjct: 49 VTGAGRGIGREIAK--------------------MLAKSVSHVICISRTQKSCDSVVDEI 88
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ + ++ D + ++ + E ++ ILVNN G + R L +
Sbjct: 89 KS-FGYESSGYAGDVSKKEEISEVINKILTEHKNVD--ILVNNAGIT-----RDNLFLRM 140
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K + +++ N+ +L + Q + M+ R G ++NISS L + + Y +SK V
Sbjct: 141 KNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGV 200
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ L E I V + PG+++++M
Sbjct: 201 IGFTKSLAKELASRNITVNAIAPGFISSDM 230
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 81.8 bits (203), Expect = 7e-19
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G + + L K G VV + +
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNS-------------------PRRVKWLEDQ 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ D + D + F V+ E+ I+ +LVNN G + R +
Sbjct: 59 KAL-GFDFYASEGNVGDWDSTKQAFDKVKAEVGEID--VLVNNAGIT-----RDVVFRKM 110
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ ++ N+ +L ++ + V+ MVE+ G ++NISS + Y +K +
Sbjct: 111 TREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGI 170
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ L E G+ V V PGY+ T+M
Sbjct: 171 HGFTMSLAQEVATKGVTVNTVSPGYIGTDM 200
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 81.4 bits (202), Expect = 1e-18
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+GKA A L K G V +V +R+ + + V+ +I
Sbjct: 6 VTGASRGIGKAIALSLGKAGCKV-------------------LVNYARSAKAAEEVSKQI 46
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
Y D + + I+ ++VNN G + R L +
Sbjct: 47 EA-YGGQAITFGGDVSKEADVEAMMKTAIDAWGTID--VVVNNAGIT-----RDTLLIRM 98
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K++ + ++ N+ + Q M+++RKG ++NI+S LI + + Y A+K V
Sbjct: 99 KKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGV 158
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
FS E I V V PG++A++M
Sbjct: 159 IGFSKTAAREGASRNINVNVVCPGFIASDM 188
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 81.8 bits (203), Expect = 1e-18
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+A A LA G V + + D V A I
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSA-------------------GAADEVVAAI 73
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ + AD + +FA V + ++ +LVNN G + R L +
Sbjct: 74 AA-AGGEAFAVKADVSQESEVEALFAAVIERWGRLD--VLVNNAGIT-----RDTLLLRM 125
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
K + +++ N+ + + M++QR G ++NI+S + +P + Y A+K V
Sbjct: 126 KRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGV 185
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ + E GI V V PG++AT+M
Sbjct: 186 IGLTKTVAKELASRGITVNAVAPGFIATDM 215
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 81.4 bits (202), Expect = 1e-18
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA+ G+G+A A LAK G +VV+ E +K + V EI
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNE-------------------QKANEVVDEI 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ D + AD + + ++ ILVNN G + + L +
Sbjct: 50 KK-LGSDAIAVRADVANAEDVTNMVKQTVDVFGQVD--ILVNNAGVT-----KDNLLMRM 101
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
KE + +++ N+ + + V M+ QR G +VNI+S + +P + Y A+K V
Sbjct: 102 KEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGV 161
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ E I V + PG++AT+M
Sbjct: 162 IGLTKTSAKELASRNITVNAIAPGFIATDM 191
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 81.4 bits (202), Expect = 1e-18
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG+T G+G+A AE LA G V++ + E+ VA EI
Sbjct: 12 VTGSTRGIGRAIAE--------------------KLASAGSTVIITGTSGERAKAVAEEI 51
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+KY V + + K F + + GI+ ILVNN G + R L +
Sbjct: 52 ANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGID--ILVNNAGIT-----RDKLFLRM 104
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ ++ N+ + Q + M++QR G +VNISS + Y +K +
Sbjct: 105 SLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGL 164
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
F+ L E ++V V PG++ T+M
Sbjct: 165 IGFTKSLAKELAPRNVLVNAVAPGFIETDM 194
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 81.6 bits (202), Expect = 1e-18
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 77/255 (30%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A L + DVVL +R + ++
Sbjct: 9 VTGGNKGIGLAIVRDLCR-------------------LFSGDVVLTARDVTRGQAAVQQL 49
Query: 61 RDKYKVDTKVIVADFTDP---KIFA-HVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ + + + D D + + KE G++ +LVNN G ++ + +
Sbjct: 50 QAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYGGLD--VLVNNAGIAFKVADPTPFHIQA 106
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTA-------------ALIPSP 163
E M N +C ++P + + +G VVN+SS S
Sbjct: 107 EVT----MKTNFFGTRDVCTELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160
Query: 164 MLSV----------------------------YGASKLFVSKFSTDLQSEYKKH----GI 191
++ YG +K+ V+ S + + I
Sbjct: 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKI 220
Query: 192 IVQCVMPGYVATNMS 206
++ PG+V T+M+
Sbjct: 221 LLNACCPGWVRTDMA 235
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 81.0 bits (201), Expect = 1e-18
Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA+ G+G A A L KLG V++ +EK +
Sbjct: 19 ITGASSGIGSAIARLLHKLGSKVIISGSNEEK------------------------LKSL 54
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPEKETV 119
+ K + + V + + + +++ + + ++ ILV N G + LA+ K+
Sbjct: 55 GNALKDNYTIEVCNLANKEECSNLISKTSNLD--ILVCNAGIT-----SDTLAIRMKDQD 107
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ ++ N+ + + + M+++R G ++NISS + +P + Y ASK + +
Sbjct: 108 FDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMT 167
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
L E GI V V PG++ ++M
Sbjct: 168 KSLSYEVATRGITVNAVAPGFIKSDM 193
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 81.4 bits (202), Expect = 1e-18
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGAT G+G+A A G V L ++K EI
Sbjct: 32 VTGATGGIGEAIARCFHAQGAIVGLHGTREDK------------------------LKEI 67
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
D V A+ +D ++ E+E+ GI+ ILVNN G + R L V
Sbjct: 68 AADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGID--ILVNNAGIT-----RDGLFVRM 120
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
++ + +++ N+ ++ + ++ M+ +R G ++NI+S ++ +P + Y A+K +
Sbjct: 121 QDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGL 180
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
FS L E I V C+ PG++ + M
Sbjct: 181 IGFSKALAQEIASRNITVNCIAPGFIKSAM 210
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 81.9 bits (202), Expect = 2e-18
Identities = 44/280 (15%), Positives = 80/280 (28%), Gaps = 98/280 (35%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G + L+ GI VVL R K ++
Sbjct: 17 VTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHE--------------------AVEKL 56
Query: 61 RDKYKVDTKVIVADFTDP-----KIFAHVEKELTGIEAGILVNNVGYSYP---------- 105
++ + D TDP + ++ ++ ILVNN G +
Sbjct: 57 KNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLD--ILVNNAGVAGFSVDADRFKAM 114
Query: 106 --------------YPERFLAVPEKETV--YHNIMHCNVITLLSMCQIVMPHMVEQRKGV 149
Y + ET + N + S+ ++++P +
Sbjct: 115 ISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPR 174
Query: 150 VVNISSTAALIP-------------------------------------------SPMLS 166
+VN+SS+ + +
Sbjct: 175 IVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGA 234
Query: 167 VYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMS 206
Y SK ++ ++ L ++ V CV PG V T M+
Sbjct: 235 AYTTSKACLNAYTRVLANKIP--KFQVNCVCPGLVKTEMN 272
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 82.9 bits (205), Expect = 2e-18
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 26/211 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA GLG+ YA A+ G VV+ N LG ++ D V EI
Sbjct: 24 VTGAGAGLGREYALLFAERGAKVVV---------N--DLGGTHSGDGASQRAADIVVDEI 72
Query: 61 RDKYKVDTKVIVADFTD----PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
R VAD+ K+ K ++ ILVNN G + E+
Sbjct: 73 RKAGGEA----VADYNSVIDGAKVIETAIKAFGRVD--ILVNNAGILRDRS--LVKTSEQ 124
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVS 176
+ ++ + ++ Q P+M +Q G ++ SS + + + Y A+K+ +
Sbjct: 125 D--WNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI 182
Query: 177 KFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
+ + E ++ ++ ++P A+ M++
Sbjct: 183 GLANTVAIEGARNNVLCNVIVPT-AASRMTE 212
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 80.3 bits (199), Expect = 3e-18
Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 37/224 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG GLG A + L G+ V + + + +
Sbjct: 30 VTGGMGGLGAAISRRLHDAGMAVAVSHSERN-------------------DHVSTWLMHE 70
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
RD D K D D + V + ++ +L+NN G + R +
Sbjct: 71 RDA-GRDFKAYAVDVADFESCERCAEKVLADFGKVD--VLINNAGIT-----RDATFMKM 122
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ + +M ++ + ++ + + MVE+R G +VNI S + + Y ++K +
Sbjct: 123 TKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGI 182
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM-----SKIKKSSWM 214
F+ L E K GI V V PGY+AT M + ++ +
Sbjct: 183 HGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEAKIL 226
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 79.9 bits (198), Expect = 5e-18
Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 48/220 (21%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
IT T GLGK E L G V + + ++ +
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT-------------------TAMETMKETY 52
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+D + + + AD T KI I+ L+NN G ++ + E
Sbjct: 53 KD-VEERLQFVQADVTKKEDLHKIVEEAMSHFGKID--FLINNAGPYVFERKKLVDYEED 109
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSV--------- 167
E ++ ++ N+ + + ++V+P M +Q G ++N
Sbjct: 110 E--WNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQ---------GADSAPGWIYR 158
Query: 168 --YGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ A+K+ + + + E ++GI V PG + M
Sbjct: 159 SAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEM 198
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 76.8 bits (190), Expect = 5e-17
Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 33/207 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAE 59
+TGA G+G+A + A+ G +V + R + L L + +
Sbjct: 11 VTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIA-------------- 56
Query: 60 IRDKYKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
D V+D +FA +E + + + G ++ L+
Sbjct: 57 ----VVAD----VSDPKAVEAVFAEALEEFGRLH--GVAHFAGVAHS----ALSWNLPLE 102
Query: 119 VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKF 178
+ ++ N+ + + + + G +V S A L + L+ Y A KL V
Sbjct: 103 AWEKVLRVNLTGSFLVARKAGEVL--EEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGL 159
Query: 179 STDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E + G+ V ++PG + T M
Sbjct: 160 ARTLALELARKGVRVNVLLPGLIQTPM 186
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 76.4 bits (189), Expect = 6e-17
Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 39/210 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITGA G+G+A E AK G +V + L A +
Sbjct: 10 ITGAAHGIGRATLE--------------------LFAKEGARLVACDIEEGPLREAAEAV 49
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+V D DP + FA L ++ +V+ G + R
Sbjct: 50 G------AHPVVMDVADPASVERGFAEALAHLGRLD--GVVHYAGIT-----RDNFHWKM 96
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFV 175
+ ++ N+ + + M E+ G +V +S L + + Y AS V
Sbjct: 97 PLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL-GNLGQANYAASMAGV 155
Query: 176 SKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+ L E + GI V + PG++ T M
Sbjct: 156 VGLTRTLALELGRWGIRVNTLAPGFIETRM 185
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 75.4 bits (186), Expect = 2e-16
Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 41/218 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
++G GLG+A L G VV+ EK +A E+
Sbjct: 35 VSGGAGGLGEATVRRLHADG----------------LG----VVIADLAAEKGKALADEL 74
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLA---V 113
++ + V + +V + G+ +R +
Sbjct: 75 GNRAEFVSTN----VTSEDSVLAAIEAANQLGRLR--YAVVAHGGFG--VAQRIVQRDGS 126
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQR------KGVVVNISSTAALIPSPMLSV 167
P + + + ++ ++V + +G +V +S A +
Sbjct: 127 PADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTA 186
Query: 168 YGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
Y A+K V + + GI V + PG + T +
Sbjct: 187 YAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPI 224
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 74.9 bits (185), Expect = 3e-16
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 36/206 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A A A G V + R+ E + + D+ D E
Sbjct: 26 VTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCDIT---------DTEQVE- 75
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPEKETV 119
+ + +E+ +E +L+ N G + + L + E
Sbjct: 76 ------------------QAYKEIEETHGPVE--VLIANAGVT-----KDQLLMRMSEED 110
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ +++ N+ + + M+ +KG VV ISS L+ S + Y ASK + F+
Sbjct: 111 FTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFA 170
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
L E I V PG+V T+M
Sbjct: 171 RSLARELGSRNITFNVVAPGFVDTDM 196
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 75.8 bits (187), Expect = 4e-16
Identities = 49/216 (22%), Positives = 78/216 (36%), Gaps = 47/216 (21%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G AE A+ G VV I E L VA ++
Sbjct: 218 VTGAARGIGATIAEVFARDGATVVAIDV------------------DGAAEDLKRVADKV 259
Query: 61 RDK-YKVDTKVIVADFTDP-KIFAHVEKELTGIEAGILVNNVGY---------SYPYPER 109
+D V KI AHV + G + ILVNN G +R
Sbjct: 260 GGTALTLD----VTADDAVDKITAHVTEHH-GGKVDILVNNAGITRDKLLANMD---EKR 311
Query: 110 FLAVPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYG 169
+ AV + N++ + + ++ + G V+ +SS A + + + Y
Sbjct: 312 WDAV----------IAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYA 361
Query: 170 ASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
+K + + L GI + V PG++ T M
Sbjct: 362 TTKAGMIGLAEALAPVLADKGITINAVAPGFIETKM 397
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 74.2 bits (183), Expect = 6e-16
Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 42/219 (19%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
ITG GLG A AE L G A VL+ + A ++
Sbjct: 17 ITGGASGLGLATAERLVGQG----------------AS----AVLLDLPNSGGEAQAKKL 56
Query: 61 RDK---YKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEK 116
+ D V D A + + + + VN G + + + +
Sbjct: 57 GNNCVFAPAD----VTSEKDVQTALALAKGKFGRV--DVAVNCAGIA--VASKTYNLKKG 108
Query: 117 ET----VYHNIMHCNVITLLSMCQIVMPHMVEQ------RKGVVVNISSTAALIPSPMLS 166
+T + ++ N++ ++ ++V M + ++GV++N +S AA +
Sbjct: 109 QTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQA 168
Query: 167 VYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
Y ASK + + + + GI V + PG T +
Sbjct: 169 AYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 207
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 73.7 bits (182), Expect = 6e-16
Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 36/206 (17%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG G+G A A+ LA G V + R L + +DV D+ A +
Sbjct: 20 VTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVT---------DSDAVD- 69
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPEKETV 119
+ F VE+ +E +LV+N G S + E
Sbjct: 70 ------------------RAFTAVEEHQGPVE--VLVSNAGLS-----ADAFLMRMTEEK 104
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGASKLFVSKFS 179
+ +++ N+ + Q M + G ++ I S + L + Y ASK V +
Sbjct: 105 FEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMA 164
Query: 180 TDLQSEYKKHGIIVQCVMPGYVATNM 205
+ E K + V PGY+ T+M
Sbjct: 165 RSIARELSKANVTANVVAPGYIDTDM 190
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 73.7 bits (182), Expect = 7e-16
Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 26/211 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A + LA G V + L ++
Sbjct: 12 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETV-------------RLLGGPGSKE 58
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER-FLAVPE 115
+ + AD ++ + V+ + + ++V+ G + + +
Sbjct: 59 G-PPRGNHAAFQADVSEARAARCLLEQVQACFSRPPS-VVVSCAGIT-----QDEFLLHM 111
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQR-KGVVVNISSTAALIPSPMLSVYGASKLF 174
E + ++ N+ + Q +V +G ++NISS + + + Y ASK
Sbjct: 112 SEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAG 171
Query: 175 VSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
V + E +HGI V+PG++AT M
Sbjct: 172 VIGLTQTAARELGRHGIRCNSVLPGFIATPM 202
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 72.6 bits (179), Expect = 2e-15
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 36/215 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAE 59
+TGA+ GLG A LA+ G V+ + + A LG V
Sbjct: 12 VTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRF-------------- 57
Query: 60 IRDKYKVDTKVIVADFTD-PKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
D V + D A ++E + LVN G + E+ L
Sbjct: 58 ----RNAD----VTNEADATAALAFAKQEFGHV--HGLVNCAGTA--PGEKILGRSGPHA 105
Query: 119 V--YHNIMHCNVITLLSMCQIVMPHMVEQR------KGVVVNISSTAALIPSPMLSVYGA 170
+ + + N+I +M ++ M + +GV+VN +S AA + Y A
Sbjct: 106 LDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAA 165
Query: 171 SKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
SK V+ + E + GI V + PG T M
Sbjct: 166 SKGGVAALTLPAARELARFGIRVVTIAPGIFDTPM 200
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 68.9 bits (169), Expect = 4e-14
Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 74/235 (31%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I+G G+G A + L G +V I + V A++
Sbjct: 6 ISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-----------------------VIADL 42
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
A+ I + K G++ LV G + + V
Sbjct: 43 ST----------AEGRKQAIADVLAKCSKGMD--GLVLCAG-----------LGPQTKVL 79
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA---------------------- 158
N++ N + +P + + + V ISS A+
Sbjct: 80 GNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139
Query: 159 ------LIPSPMLSVYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSK 207
Y SK ++ + + + G+ + + PG T + +
Sbjct: 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQ 194
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 66.5 bits (163), Expect = 3e-13
Identities = 45/219 (20%), Positives = 74/219 (33%), Gaps = 46/219 (21%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TG GLG A + L G VV++ E + +A LG
Sbjct: 14 VTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV--VADLGDRARF--------------- 56
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEA----GILVNNVGYSYPYPERFLAV--P 114
D V D V L E I+VN G R L+
Sbjct: 57 ---AAAD----VTDEAA------VASALDLAETMGTLRIVVNCAGTG--NAIRVLSRDGV 101
Query: 115 EKETVYHNIMHCNVITLLSMCQIVMPHMVE--------QRKGVVVNISSTAALIPSPMLS 166
+ I+ N++ ++ ++ + + + +GV++N +S AA +
Sbjct: 102 FSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQA 161
Query: 167 VYGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
Y ASK V + + + H I V + PG T +
Sbjct: 162 AYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPL 200
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 66.2 bits (162), Expect = 6e-13
Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 34/218 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G+A+A A G VV+ N +G+D S +V EI
Sbjct: 32 VTGAGGGIGRAHALAFAAEGARVVV---------NDIGVGLDGSPAS-GGSAAQSVVDEI 81
Query: 61 RDKYKVDTKVIVADFTDP----KIFAHVEKELTGIEAGILVNNVGYSYPYPER---FLAV 113
+ ++ D + + G++ +LVNN G R
Sbjct: 82 TAA-GGEAVADGSNVADWDQAAGLIQTAVETFGGLD--VLVNNAGI-----VRDRMIANT 133
Query: 114 PEKETVYHNIMHCNVITLLSMCQIVMPHM------VEQRKGVVVNISSTAALIPSPMLSV 167
E+E + ++ ++ + + + + G ++N SS A L S
Sbjct: 134 SEEE--FDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGN 191
Query: 168 YGASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
Y A+K ++ + +E ++G+ V + P T M
Sbjct: 192 YSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRM 228
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 64.6 bits (158), Expect = 1e-12
Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 44/214 (20%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEK-LDNVAAE 59
+TG GLG+A A L G VV++ +E D + G DV T+E+ + A
Sbjct: 7 VTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEG-DV-----TREEDVRRAVAR 60
Query: 60 IRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
+++ + +V+ G E+ L +
Sbjct: 61 AQEEAPLF---------------------------AVVSAAGVGLA--EKILGKEGPHGL 91
Query: 120 --YHNIMHCNVITLLSMCQIVMPHMVEQ------RKGVVVNISSTAALIPSPMLSVYGAS 171
+ ++ N++ ++ ++ M E ++GV+VN +S AA + Y AS
Sbjct: 92 ESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAAS 151
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNM 205
K V + E GI V V PG T +
Sbjct: 152 KGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL 185
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 60.3 bits (147), Expect = 5e-11
Identities = 55/230 (23%), Positives = 81/230 (35%), Gaps = 73/230 (31%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDN-LAKLGIDVVLISRTKEKLDNVAAE 59
ITGA GLG A LA+ G V++ R K + + V + +LD
Sbjct: 21 ITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVR-----ELD----- 70
Query: 60 IRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET- 118
+ D + + FA ++G + +L+NN G +AVP T
Sbjct: 71 ------------LQDLSSVRRFA---DGVSGAD--VLINNAGI--------MAVPYALTV 105
Query: 119 --------VYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAALIP--------- 161
H + H + LL +P + VV +SS A
Sbjct: 106 DGFESQIGTNH-LGHFALTNLL------LPRL----TDRVVTVSSMAHWPGRINLEDLNW 154
Query: 162 -----SPMLSVYGASKLFVSKFSTDLQSEYKKHG--IIVQCVMPGYVATN 204
SP L+ Y SKL F+++LQ G + PGY TN
Sbjct: 155 RSRRYSPWLA-YSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTN 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-08
Identities = 53/276 (19%), Positives = 85/276 (30%), Gaps = 109/276 (39%)
Query: 7 GLGKAYAEGLAKL-----GIDVVLISRTKEKLDNLAKL----------GIDVVLISRTKE 51
G Y E L L + LI + E L L + G++++ E
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL------E 217
Query: 52 KLDNVAAEIRDK--------------------YKVDTKVIVADFTDPKIFAHVEKELTGI 91
L+N + DK Y V K++ FT P K TG
Sbjct: 218 WLEN-PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL--GFT-PGELRSYLKGATGH 273
Query: 92 EAGILVNNVGYSYPYPERFLAV-----PEKETVYHNIMHCNVITLL----SMCQIVMPHM 142
G++ AV E+ + ++ IT+L C P+
Sbjct: 274 SQGLVT--------------AVAIAETDSWESFFVSVR--KAITVLFFIGVRCYEAYPNT 317
Query: 143 ----------VEQRKGVVVNISSTAALIPSPMLSVYGASKL----FVSKFSTDLQSEYKK 188
+E +GV PSPMLS+ ++ +V+K ++ L + K
Sbjct: 318 SLPPSILEDSLENNEGV-----------PSPMLSISNLTQEQVQDYVNKTNSHLPAG--K 364
Query: 189 HGIIV------QCVMPGY------VATNMSKIKKSS 212
I V+ G + + K K S
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Score = 40.8 bits (95), Expect = 4e-04
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 64/200 (32%)
Query: 59 EIRDKYKVDT-KVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYP-ERFL----A 112
E+RD Y T V+V D + L+ + L ++ +L
Sbjct: 172 ELRDLY--QTYHVLVGDL-----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 113 VPEKETVYHNIMHCNVITLLSMCQ-IVMPHMVEQRKGVVVNISSTAALIPSPMLSVYGAS 171
P+K+ + + C +I ++ + +V ++ G + + A + +
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--------TGHSQ- 275
Query: 172 KLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIKKSSWMVPSPATFVDSALKT--- 228
G++ VA + SW +F S K
Sbjct: 276 ------------------GLVTA------VAIAETD----SW-----ESFFVSVRKAITV 302
Query: 229 ---IGIQNQTTGYYPHCFLE 245
IG++ YP+ L
Sbjct: 303 LFFIGVRCYEA--YPNTSLP 320
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 46.4 bits (110), Expect = 3e-06
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 27/101 (26%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ T +G A LA G +VVL R +K A +
Sbjct: 124 VLAGTGPVGMRSAAL--------------------LAGEGAEVVLCGRKLDKAQAAADSV 163
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVG 101
++KV+ V A+ D A + + G +
Sbjct: 164 NKRFKVN--VTAAETADD---ASRAEAVKGAH--FVFTAGA 197
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 45.3 bits (108), Expect = 6e-06
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 46/131 (35%)
Query: 1 ITGATDGLGKAYAEGLAKL--GIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+TGAT LG + L K ++ I R EK LA G++V
Sbjct: 5 VTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVR-------------- 50
Query: 59 EIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKET 118
D+ P+ G+ + + S P+ + L + +
Sbjct: 51 -------------HGDYNQPESLQKA---FAGVSKLLFI-----SGPHYDNTLLIVQ--- 86
Query: 119 VYHNIMHCNVI 129
H NV+
Sbjct: 87 ------HANVV 91
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 45.0 bits (107), Expect = 9e-06
Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 59/167 (35%)
Query: 1 ITGATDGLGKAYAEGLAKLGID-VVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+TGAT LG ID + R EK+ + + + V
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVR--------------- 49
Query: 60 IRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETV 119
D+ + + G++ + + F +PE
Sbjct: 50 ------------QLDYFNQESMVEA---FKGMDTVVFI-----PSIIHPSFKRIPE---- 85
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGV--VVNISSTAALIPSPM 164
N++ ++ GV ++ I A +P
Sbjct: 86 -----VENLVYAA------------KQSGVAHIIFIGYYADQHNNPF 115
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 43.7 bits (103), Expect = 2e-05
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+ + LA G ++ SR ++++ + G + +L + LD V
Sbjct: 16 TARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTH 66
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 ITGATDGLGKAYAEGLAKL--GIDVVLISRTKEKLDNLAKLGIDVV 44
ITGAT LG E L K +V I R K LA GI V
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVR 49
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 40.7 bits (96), Expect = 3e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+T L K GLAK G ++ R E++ L +G VL + + A
Sbjct: 170 MTAGASQLCKL-IIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKA----PDFEAT 224
Query: 60 IRD 62
+R+
Sbjct: 225 LRE 227
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 38.9 bits (91), Expect = 6e-04
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GA + + L G + V + R +E+ L + G ++++ +E + A I
Sbjct: 26 VVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASI 85
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 38.9 bits (91), Expect = 8e-04
Identities = 19/155 (12%), Positives = 41/155 (26%), Gaps = 36/155 (23%)
Query: 53 LDNVAAEIRDKYKVDTKVIVADFTDPKIFAHV-EKELTGI--EAGILVNNVGYSYPYPER 109
+D E + AD + P + E I A I+ G + ++
Sbjct: 51 IDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDVIFHLAAIV---SGEAELDFDK 107
Query: 110 FLAVPEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAAL---------- 159
+ N+ + + + V +S+ A+
Sbjct: 108 GYRI-------------NLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIP 154
Query: 160 ---IPSPMLSVYGASKLFVSKFSTDLQSEYKKHGI 191
+P+ + YG K +D ++
Sbjct: 155 DEFHTTPL-TSYGTQKAICELLLSDY---SRRGFF 185
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 38.4 bits (90), Expect = 8e-04
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
I G+T +GK+ + L+ + +R E++ + + T E++
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH 62
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 38.8 bits (91), Expect = 0.001
Identities = 32/196 (16%), Positives = 51/196 (26%), Gaps = 76/196 (38%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GAT LG A + G D+VLI R ++ LA L +
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECR---------------- 61
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIE-----AGILVNNVGYSYPYPERFLAVPE 115
VA+ D A +E+ L G++ AG + +A
Sbjct: 62 -----------VAEMLDH---AGLERALRGLDGVIFSAGY----YPSRPRRWQEEVAS-- 101
Query: 116 KETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGV--VVNISSTAALIPSP---------- 163
+ + V ++ + S A+ P
Sbjct: 102 -----------ALGQTNPFYAAC------LQARVPRILYVGSAYAMPRHPQGLPGHEGLF 144
Query: 164 ------MLSVYGASKL 173
S Y K
Sbjct: 145 YDSLPSGKSSYVLCKW 160
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 37.3 bits (86), Expect = 0.003
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGI------------DVVLISR 48
I GA +G + + I E D L +GI DVV+++
Sbjct: 16 ILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLAL 75
Query: 49 TKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGI 91
++ VA +I + + T IV +A V E I
Sbjct: 76 PDNIIEKVAEDIVPRVRPGT--IVLILDAAAPYAGVMPERADI 116
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 37.2 bits (86), Expect = 0.003
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
T A LG+ + K GI +V I R +E+ D L G V + + ++
Sbjct: 177 HTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAAS----PTFMQDL 232
Query: 61 RD 62
+
Sbjct: 233 TE 234
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 37.1 bits (86), Expect = 0.003
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
I GA+ GLG +YA K G V + + +K + LG D+V+ D++A +
Sbjct: 226 IWGASGGLG-SYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADD 284
Query: 60 IRDKYKVDTKV 70
R + K+
Sbjct: 285 PRRVVETGRKL 295
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRT-------KEKLDNLAKLGIDVVLIS 47
+TG T G+G A LA+ G ++L+SR+ E + L LG + +
Sbjct: 231 VTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 285
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 36.2 bits (83), Expect = 0.005
Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 6/139 (4%)
Query: 2 TGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAEI 60
TG +G+ A LA LG +V + +R + A+ + S+ + +V
Sbjct: 27 TGT---VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAA 83
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+++V A + AG ++ ++ + P P V
Sbjct: 84 FADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDI--ANPLDFSHGMPPTLNPVN 141
Query: 121 HNIMHCNVITLLSMCQIVM 139
+ + + ++V
Sbjct: 142 TDSLGEQIQRTFPEAKVVK 160
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 36.5 bits (85), Expect = 0.006
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAK----LGIDVVLISRTKEKLDN 55
+ G+G+A + +A LG+ + + R + + L+ LG + V I+ + +
Sbjct: 173 QNASNSGVGQAVIQ-IAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV-ITEEELRRPE 230
Query: 56 VAAEIRDKYKVD 67
+ +D +
Sbjct: 231 MKNFFKDMPQPR 242
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 36.3 bits (84), Expect = 0.008
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
I GA+ GLG +YA A G + + + + +K + +G + + I R E E
Sbjct: 234 IWGASGGLG-SYATQFALAGGANPICVVSSPQKAEICRAMGAEAI-IDRNAEGYRFWKDE 291
Query: 60 IRDKYKVDTKVI--VADFTDPKIFAHV 84
K + + + T + V
Sbjct: 292 NTQDPKEWKRFGKRIRELTGGEDIDIV 318
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 35.8 bits (83), Expect = 0.009
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 41/129 (31%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRT-------KEKLDNLAKLGIDVVLISRTKEK 52
+TG T G+G A LA+ G +VL SR E L +LG+ V
Sbjct: 244 VTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVT-------- 295
Query: 53 LDNVAAEIRDKYKVDTKVIVADFTDPKIFAHV------EKELTGI--EAGILVNNVGYSY 104
+AA D D + A + + LT + AG+ ++ +
Sbjct: 296 ---IAA--------------CDAADREALAALLAELPEDAPLTAVFHSAGVAHDDAPVAD 338
Query: 105 PYPERFLAV 113
+ A+
Sbjct: 339 LTLGQLDAL 347
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 35.6 bits (83), Expect = 0.009
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVV 44
+ GA G +A L K G V L +RTKEK LA+ ++VV
Sbjct: 134 VLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVV 177
Score = 30.6 bits (70), Expect = 0.41
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADF 75
L K G V L +RTKEK +A + + + ++
Sbjct: 148 LVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKV 187
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme
transport, transport protein; HET: HEM; 2.05A {Shigella
dysenteriae} PDB: 2rg7_A
Length = 256
Score = 35.7 bits (83), Expect = 0.010
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 13 AEGLAKLGIDVVLISRT---KEKLDNLAKLGIDVVLISRTKEKLDNVAAEIR 61
+EG+ L D V+ + + LD L ++VV + R L+ + A IR
Sbjct: 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIR 103
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 35.9 bits (83), Expect = 0.010
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRT-------KEKLDNLAKLGIDVVLIS 47
ITG +G+ A LA G +VL SR E + L G +VV +
Sbjct: 264 ITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAA 318
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 35.3 bits (81), Expect = 0.011
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVV 44
++ A L G VV+ SR ++ L V
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT 75
Score = 31.1 bits (70), Expect = 0.27
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 35 NLAKLGIDVVLISRTKEKLDNVAAEIR 61
L G VV+ SR ++ +
Sbjct: 46 RLVGSGFKVVVGSRNPKRTARLFPSAA 72
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 35.9 bits (83), Expect = 0.011
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK 38
G GKA A G + G VV+ +RT E+ LA+
Sbjct: 374 GAGKALAYGAKEKGAKVVIANRTYERALELAE 405
Score = 31.2 bits (71), Expect = 0.34
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 15/63 (23%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGI 95
+ G VV+ +RT E+ +A I K + + D + + +
Sbjct: 383 AKEKGAKVVIANRTYERALELAEAIGGKA-----LSLTDLDNYHP----------EDGMV 427
Query: 96 LVN 98
L N
Sbjct: 428 LAN 430
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 35.2 bits (80), Expect = 0.012
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK 38
+ G T LGK A LA LG ++V+ SR +EK + A
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA 42
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 34.8 bits (81), Expect = 0.016
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 1 ITGATDGLG----KAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNV 56
I+GA GLG + YA +G V+ I + K + +G +V + K ++
Sbjct: 175 ISGAAGGLGSLAVQ-YA---KAMGYRVLGIDGGEGKEELFRSIGGEVFIDFT---KEKDI 227
Query: 57 AAEIRDK 63
+
Sbjct: 228 VGAVLKA 234
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 34.7 bits (80), Expect = 0.020
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTK----EKLDNLAKLGIDVVLISRTKEKLDN 55
G T +GK ++ + K L + + + R + E + +L +LG V I+ +
Sbjct: 173 QNGGTSAVGKYASQ-IGKLLNFNSISVIRDRPNLDEVVASLKELGATQV-ITEDQNNSRE 230
Query: 56 VAAEIRD 62
I++
Sbjct: 231 FGPTIKE 237
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 34.8 bits (80), Expect = 0.021
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGID-VVLISRTK-EKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+TGA + A LA+ G ++L + + + ++ +L ++ A
Sbjct: 256 VTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGA 315
Query: 59 EIRDKYKVDTKVIVADFTDP----KIFAHVEKE--LTGI--EAGIL 96
V+ D TD ++ A V L+ + +
Sbjct: 316 TAT--------VVTCDLTDAEAAARLLAGVSDAHPLSAVLHLPPTV 353
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 34.5 bits (80), Expect = 0.023
Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+ +G +A+ L++ L ++ ++R + + L +LG V+ + T +
Sbjct: 150 VNACGSAIGHLFAQ-LSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTST----APLYET 204
Query: 60 IRD 62
+ +
Sbjct: 205 VME 207
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 34.1 bits (79), Expect = 0.026
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVL 45
G KA A L K G+ V +++R+ LD +LG D +
Sbjct: 128 GSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFM 166
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 34.1 bits (79), Expect = 0.028
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 13 AEGLAKLGIDVVLISRT---KEKLDNLAKLGIDVVLISRTKEKLDNVAAEIR 61
AEG+ + ++L+S L +A G++VV + + ++VA +I
Sbjct: 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP-GQTTPESVAMKIN 102
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 34.5 bits (79), Expect = 0.039
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 66/197 (33%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRT-------KEKLDNLAKLGIDVVLISRTKEK 52
ITG G G A+ L G +VL SR+ ++ + G+ V+
Sbjct: 1889 ITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVL-------- 1940
Query: 53 LDNVAAEIRDKYKVDTKVIVADFTDP----KIFAHVEKE--LTGIE--AGIL----VNNV 100
V+ ++ + + + + G+ A +L + N
Sbjct: 1941 ---VST--------------SNASSLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQ 1983
Query: 101 GYSYPYPERFLAV--PEKETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAA 158
PE F V P+ + L + + P + V SS +
Sbjct: 1984 T-----PEFFQDVSKPKYSGTAN---------LDRVTREACPEL-----DYFVIFSSVSC 2024
Query: 159 LIPSPMLSVYGASKLFV 175
+ + YG + +
Sbjct: 2025 GRGNAGQANYGFANSAM 2041
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG,
protein structure initiative, joint center for
structural G transferase; 1.91A {Thermotoga maritima}
SCOP: c.72.1.1
Length = 298
Score = 33.6 bits (77), Expect = 0.045
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 9 GKAY--AEGLAKLGIDVVLISR----TKEKLDNLAKLGIDVVLISRTK 50
G A + LG+ +I++ K L G++VV + +
Sbjct: 37 GGVVMGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPR 84
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 33.5 bits (77), Expect = 0.046
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 13 AEGLAKLGIDVVLISRT---KEKLDNLAKLGIDVVLISRTKEKLDNVAAEIR 61
AEG+ L D+++ + L L G+ V +S K L+ + + ++
Sbjct: 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLS-AKPDLEALESNLK 102
Score = 28.5 bits (64), Expect = 1.9
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISR------TKEKLDNLAK-LGID---VVLISRTK 50
+ G + + L G+ V +S + L L LG+ +
Sbjct: 63 LIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQRAEAAELDYR 122
Query: 51 EKLDNVAAEIRDKYKVDTKVIV 72
++L A I K V
Sbjct: 123 QRLRRQADWIAAAQKSQPAPGV 144
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 33.7 bits (78), Expect = 0.047
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+ A G+ A A +AK G V+ + +++KL LG D ++ T
Sbjct: 172 VMAAGSGVSVA-AIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRR 229
Query: 60 IRDKYKVDTKVIV 72
+ D +V
Sbjct: 230 LTGGKGAD--KVV 240
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.1 bits (75), Expect = 0.050
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVV 44
GK+ + + G VV SR + L + G +V+
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSRNPQVSSLLPR-GAEVL 65
Score = 28.9 bits (64), Expect = 1.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIR 61
+ + G VV SR + +
Sbjct: 38 MLQCGYSVVFGSRNPQVSSLLPRGAE 63
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 33.3 bits (77), Expect = 0.052
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVV 44
G G+A A L + G++V + +RT ++ LA+ G+ V
Sbjct: 126 GAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Score = 28.3 bits (64), Expect = 2.4
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 5 TDGLGKAYAEGLAKLGIDV---VLI------SRTKEKLDNLAKLGIDVVLISRTKEKLDN 55
TD G + E L GI + L+ R L + G++V + +RT ++
Sbjct: 99 TDAPG--FLEALKAGGIPLKGPALVLGAGGAGRAV--AFALREAGLEVWVWNRTPQRALA 154
Query: 56 VAAEIRDK 63
+A E +
Sbjct: 155 LAEEFGLR 162
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 33.1 bits (75), Expect = 0.061
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVV 44
+ GAT G A + G +V+ + R +K + + +
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATL 48
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 32.5 bits (75), Expect = 0.092
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLI 46
G L K ++V I+ ++ ID L+
Sbjct: 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALL 61
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 32.5 bits (75), Expect = 0.11
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 12 YAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDK 63
YA +G++VV + EKL+ +LG D+V+ ++ A +++K
Sbjct: 183 YA---KAMGLNVVAVDIGDEKLELAKELGADLVVNPLK----EDAAKFMKEK 227
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 32.6 bits (75), Expect = 0.11
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 16 LAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIV 72
+AK G +V++ S ++EKLD LG D I+R +E + D I+
Sbjct: 208 IAKATGAEVIVTSSSREKLDRAFALGADHG-INRLEEDWVERVYALTGDRGAD--HIL 262
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 32.2 bits (74), Expect = 0.12
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
AE +A++G++ +S K +++ K+G + +
Sbjct: 49 AENMARVGVNTNFMSILGNDEHGKSIVEHSKKIGYHMDDSMVIEG 93
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A*
3b1q_A* 3b1r_A*
Length = 326
Score = 32.2 bits (74), Expect = 0.13
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 9 GK----AYAEGLAKLGIDVVLISRT-----KEKLDNLAKLGIDVVLISRTKE 51
G AYA L LG D ++ + LD + LG+ + +
Sbjct: 48 GCAGNIAYA--LNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPD 97
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 32.1 bits (74), Expect = 0.13
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRTKEKLDNLAK 38
+ G+ G +A + L D+ +++R EK +
Sbjct: 127 VLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164
Score = 28.3 bits (64), Expect = 2.5
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 5 TDGLGKAYAEGLAKLGIDV----VLISRT----KEKLDNLAKLGI-DVVLISRTKEKLDN 55
TD +G + + L+K +++ ++ + + L L D+ +++R EK
Sbjct: 104 TDYIG--FGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE 161
Query: 56 VAAEIR-----DKYKVDTKVIV 72
+ E + + + VI+
Sbjct: 162 IYGEFKVISYDELSNLKGDVII 183
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 32.2 bits (74), Expect = 0.15
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 1 ITGATDGLGKA---YAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVA 57
+ GA GLG A+ A G ++ + +E ++ + G D V+ + + +
Sbjct: 176 VVGAGGGLGTMAVQIAK--AVSGATIIGVDVREEAVEAAKRAGADYVINASMQ----DPL 229
Query: 58 AEIRD 62
AEIR
Sbjct: 230 AEIRR 234
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 31.7 bits (73), Expect = 0.17
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLI 46
G+ +GL GID + L L G
Sbjct: 34 GRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma
volcanium}
Length = 144
Score = 30.9 bits (71), Expect = 0.17
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 13 AEGLAKLGIDVVLISRTKEKLDNLA-KLGIDVVLISRTKEKLDNV 56
A + V + R + + A K + VLI+ + N
Sbjct: 37 APYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN 81
Score = 27.5 bits (62), Expect = 2.7
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 35 NLAKLGIDVVLISRTKEKLDNVAAEIRDKY 64
+ V + R + + A + +Y
Sbjct: 39 YFSYPQYKVTVAGRNIDHVRAFAEKYEYEY 68
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 31.8 bits (73), Expect = 0.17
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 16 LAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVA 57
LA +G VV + ++ K + LG D V+ SR +++
Sbjct: 213 LAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL 255
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.5 bits (71), Expect = 0.18
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I GAT G E G +V I R K+ K I+++ + D +
Sbjct: 5 IIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK-DINIL-------QKDIFDLTL 56
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVE 85
D + V + + HV
Sbjct: 57 SDLSDQNVVVDAYGISPDEAEKHVT 81
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase,
cell WALL, peptidoglycan synthesis, vancomycin, ADP
binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP:
c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 31.7 bits (73), Expect = 0.18
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLI 46
G A GL + GID + + + L +G V I
Sbjct: 23 GAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 9 GKAY--AEGLAKLGIDVVLISRT-----KEKLDNLAKLGIDVVLISRTKE 51
G A A K I L S +E L + +GI+ + + ++
Sbjct: 57 GTAGNFAIVAQKFRIPFDLYSAVGMKTHREYLAMIESMGINTGHVEKFED 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.20
Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 53/190 (27%)
Query: 29 TKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKEL 88
+KE++D++ V S T + K + +V F VE+ L
Sbjct: 47 SKEEIDHIIMSKDAV---SGTLRLFWT----LLSK----QEEMVQKF--------VEEVL 87
Query: 89 TGIEAGILVNNVGYSYPYPERFLAVPEKETV-YHNIMHCNVITLLSMCQIVMPHMVEQRK 147
I L++ + P + + + ++ N + + + + +
Sbjct: 88 R-INYKFLMSPIKTEQRQPSM----MTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLR 141
Query: 148 GVVVNISSTAALIPSPMLSVY---GASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATN 204
++ L P+ + + G+ K + + D+ YK VQC M +
Sbjct: 142 QALLE------LRPAKNVLIDGVLGSGK---TWVALDVCLSYK-----VQCKMDFKIF-- 185
Query: 205 MSKIKKSSWM 214
W+
Sbjct: 186 --------WL 187
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
binding domain, 6-stranded beta barrel nucleotide
binding domain; HET: CIT; 1.90A {Thermotoga maritima}
SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
1t6z_A* 2i1l_A
Length = 293
Score = 31.7 bits (73), Expect = 0.21
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 25 LISRTKEKLDNLAKLGIDVVL 45
L+ + +++ L++ VVL
Sbjct: 52 LLMTVESRVEMLSRYARTVVL 72
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 31.4 bits (71), Expect = 0.21
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1 ITGATDGLGKAYAEGLAKLG--IDVVLISRTKEKLDNLAKLGIDVV 44
+TGA+ G+ + L + + R+ + + + DV
Sbjct: 9 VTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVF 53
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 31.2 bits (71), Expect = 0.27
Identities = 40/261 (15%), Positives = 74/261 (28%), Gaps = 76/261 (29%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA LG+ E LA + + L +L+ L D
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEILRL--------ADLSPL--------------DPAGPNE 45
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPEKETVY 120
+ D D V + G + +V+ G S P +
Sbjct: 46 E--------CVQCDLADA---NAVNAMVAGCDG--IVHLGGISVEKP------------F 80
Query: 121 HNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNISSTAAL----IPSPM--------LSVY 168
I+ N+I L ++ + + +V SS + + +Y
Sbjct: 81 EQILQGNIIGLYNLYE----AARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLY 136
Query: 169 GASKLFVSKFSTDLQSEYKKHGIIVQCVMPGYVATNMSKIK-KSSWMVPS-PATFVDSAL 226
G SK F + + K G V G + + S+W + +++
Sbjct: 137 GVSKCFGENL---ARMYFDKFGQETALVRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVF 193
Query: 227 KTI--------GIQNQTTGYY 239
+ G G++
Sbjct: 194 RAPVLGCPVVWGASANDAGWW 214
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 30.3 bits (69), Expect = 0.27
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKL 53
G L G V+ + ++KEK++ L G D V+ T E
Sbjct: 18 GVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESF 62
Score = 28.8 bits (65), Expect = 0.90
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKI 80
L G V+ + ++KEK++ + E ++AD TD
Sbjct: 25 LTAAGKKVLAVDKSKEKIELLEDE-------GFDAVIADPTDESF 62
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 31.0 bits (70), Expect = 0.28
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISR----TKEKLDNLAKLGIDVV 44
I G T +G +G KLG + +R LD LG +V
Sbjct: 16 IFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIV 63
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.4 bits (69), Expect = 0.28
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEK 52
G + + L ++G +V+ + +EK++ A V+ + T+E
Sbjct: 18 GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEEN 61
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding
protein, MOLY binding protein, metal transport; 1.50A
{Haemophilus influenzae} PDB: 3psa_A
Length = 326
Score = 31.2 bits (71), Expect = 0.29
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRT--KEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDKY 64
L E L L DVV ++ E + ++ + I VV IS ++
Sbjct: 71 DLNSVNIESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLT 130
Query: 65 KVDTKVI 71
D
Sbjct: 131 DEDKAYN 137
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 31.2 bits (70), Expect = 0.30
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRT-------KEKLDNLAKLGIDVV 44
I GAT +G+ A +++R + L G +V
Sbjct: 15 IAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV 65
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 30.9 bits (70), Expect = 0.40
Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 43/221 (19%)
Query: 1 ITGATDG-LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRT---KEKLDNV 56
+ G DG G A A L+K +V + +DNL + D L + + +
Sbjct: 16 VIGG-DGYCGWATALHLSKKNYEVCI-------VDNLVRRLFDHQLGLESLTPIASIHDR 67
Query: 57 AAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILV------NNVGYSYPYPERF 110
+ + ++ V D D + A K ++ V + YS R
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFE-PDS---VVHFGEQRSAPYSMIDRSRA 123
Query: 111 LAVPEKETVYHNIM--------------HCNVITLLSMCQIVMPHMVEQRKGVVVNISST 156
+ T ++N++ C+++ L +M + P++ + + + +
Sbjct: 124 V-----YTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGR 178
Query: 157 AALIPSPM--LSVYGASKLFVSKFSTDLQSEYKKHGIIVQC 195
+P P S Y SK+ S + +
Sbjct: 179 TDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQ 219
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 30.6 bits (70), Expect = 0.44
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 12 YAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
YA +G+ V + KL+ +LG +V + +R + + EI
Sbjct: 185 YA---RAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEI 230
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 30.6 bits (70), Expect = 0.45
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 25 LISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE------IRDKYKVDTKVIVADFT 76
I+ E+ GID VL+ +L + E + D V+ A+FT
Sbjct: 70 GITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFT 127
>2l82_A Designed protein OR32; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, de novo protein; NMR {Artificial gene}
Length = 162
Score = 30.1 bits (67), Expect = 0.45
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLI------SRTKEKLDNLAKLGIDVVLISRTKEKLD 54
+ + + K + + G+ VVL+ R +E+L+ K G+DV + KE
Sbjct: 7 VFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTV-EDKEDFR 65
Query: 55 NVAAEIRDKY-KVDTKVIVADFTDPKIFAHVEK-ELTGIEAGILVNN 99
EI ++Y ++D VIV I +E+ + G+E ++ NN
Sbjct: 66 ENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNN 112
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.5 bits (70), Expect = 0.46
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 13 AEGLAKLGIDVVLISRTKEKL-------------DNLAKLGIDVVL---ISRTKEKLDNV 56
AE + +V LI + L + G+++VL ++ +E D +
Sbjct: 165 AEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEI 224
Query: 57 AAEIRDK--YKVDTKVIVA 73
+ D K D I+
Sbjct: 225 ITKTLDGKEIKSDI-AILC 242
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 30.7 bits (70), Expect = 0.47
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
I G+G A A L + G ++ + +++KL KLG + KE +
Sbjct: 168 IHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG-FNYKKEDFSEATLK 225
Query: 60 IRDKYKVDTKVIV 72
V+ +I+
Sbjct: 226 FTKGAGVN--LIL 236
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 30.2 bits (69), Expect = 0.47
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 7 GLGKAYAEGLAKLGI-DVVLISRTKEKLDNLAKL 39
G+ KA G + + +R + LA L
Sbjct: 129 GMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAAL 162
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 30.2 bits (69), Expect = 0.48
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+ GA G + L + + +RT EK + L + G + + + + AE
Sbjct: 146 VIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAE 204
Score = 26.8 bits (60), Expect = 6.8
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 36 LAKLGI-DVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG 94
L + + +RT EK + + E ++ + + E L E
Sbjct: 160 LLSTAAERIDMANRTVEKAERLVREGDER-----RSAYFSLAE------AETRLA--EYD 206
Query: 95 ILVN 98
I++N
Sbjct: 207 IIIN 210
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.9 bits (67), Expect = 0.60
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKI 80
L+ LG DV + + E ++K ++ + D I
Sbjct: 138 LSLLGYDVTSWDHNENSIAF-LNETKEKENLNISTALYDINAANI 181
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 30.2 bits (68), Expect = 0.61
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 21/93 (22%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+ GAT +G+ A+ LG L+ R N K A +
Sbjct: 9 LIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEK------------------AQLL 50
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEA 93
++ D A + + + ++
Sbjct: 51 ESFKASGANIVHGSIDDH---ASLVEAVKNVDV 80
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.0 bits (68), Expect = 0.64
Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 77/193 (39%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
+TGA G+G A L L +V L D + +
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVRL-------SDIVD------------LGAAEAHE--- 44
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVNNV----GYSYPYPERFLAVPEK 116
+++ D D V + + + G S P
Sbjct: 45 --------EIVACDLADA---QAVHDLVKDCDG------IIHLGGVSVERP--------- 78
Query: 117 ETVYHNIMHCNVITLLSMCQIVMPHMVEQRKGV--VVNISSTAA-------------LIP 161
+++I+ N+I ++ + G +V SS +
Sbjct: 79 ---WNDILQANIIGAYNLYE----AARNL--GKPRIVFASSNHTIGYYPRTTRIDTEVPR 129
Query: 162 SPMLSVYGASKLF 174
P S+YG SK F
Sbjct: 130 RP-DSLYGLSKCF 141
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12}
PDB: 3in1_A*
Length = 325
Score = 29.9 bits (68), Expect = 0.65
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 15 GLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+++LG L+SR + LD+ K ID+ + +
Sbjct: 52 IISRLGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVS 94
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 29.8 bits (68), Expect = 0.69
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK-LGIDVVLISRTKEKLDNVAAEIRD 62
G +A A LAK ++++ +RT EK + LAK + + + K + ++
Sbjct: 138 GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDG 193
Score = 29.1 bits (66), Expect = 1.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGI 95
LAK ++++ +RT EK + +A EI +K V F+ ++ +L I
Sbjct: 147 LAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-------FSGLDVDLD--GVDI 196
Query: 96 LVN 98
++N
Sbjct: 197 IIN 199
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 29.9 bits (68), Expect = 0.72
Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 23/96 (23%)
Query: 7 GLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVL---ISR---TKEKLDNVAAEI 60
G A GI+ L+ R +++ ++V+ S ++++ + A +
Sbjct: 66 GKAMAIC--FGLAGIETFLVVRNEQRCKQ----ELEVMYAREKSFKRLNDKRIEKINANL 119
Query: 61 R--DKYK----VDTKVIVADFTDP----KIFAHVEK 86
+ + D ++ + D ++FA++E
Sbjct: 120 KITSDFHKLSNCDL-IVESVIEDMKLKKELFANLEN 154
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 29.5 bits (67), Expect = 0.86
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A L++LG +V +I+ + + + G++ +
Sbjct: 46 ARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDR 90
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 29.8 bits (68), Expect = 0.88
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 26 ISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE-----IRDKYKVDTKVIVADFT 76
I E+ L + G++ + + + ++ A+ V D+T
Sbjct: 78 ILNPAERERKLKREGVEELYLLDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYT 133
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 29.7 bits (67), Expect = 0.88
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEK 32
ITG+ +G+A L G +V+ + R + K
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK 183
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 29.5 bits (67), Expect = 0.89
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 1 ITGATDGLGKAYAEGLAKL-GIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+T A G G+ + L+K V+ + EK L LG D + +T + V
Sbjct: 169 VTAAAGGTGQFAMQ-LSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKT----EPVGTV 223
Query: 60 IR 61
++
Sbjct: 224 LK 225
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 29.4 bits (67), Expect = 0.89
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 7 GLGKAYAEGLAKLGIDVVLIS-RTKEKLDNLAKLGIDVVLISRTKEKLDNV 56
G K A L K+ + ++ RT + +N + I+ + +S + LD
Sbjct: 127 GASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-INKINLSHAESHLDEF 176
Score = 27.9 bits (63), Expect = 2.7
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 36 LAKLGIDVVLIS-RTKEKLDNVAAEIRDKYKVDTKVIVADF 75
L K+ + ++ RT + +N + I + + +F
Sbjct: 136 LYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEF 176
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
flavoprotein, structural genomics protein structure
initiative; 1.83A {Streptococcus pneumoniae}
Length = 232
Score = 29.6 bits (67), Expect = 0.90
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVD 67
LGK E L G +V LI+ TK L + + I+ TK+ L + ++D
Sbjct: 31 LGKIITETLLSAGYEVCLIT-TKRALKPEPHPNLSIREITNTKDLLIEMQERVQD---YQ 86
Query: 68 TKVI----VADFT 76
+I V+D+T
Sbjct: 87 V-LIHSMAVSDYT 98
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.4 bits (65), Expect = 0.94
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEI 60
I G + +G+A G +V + + + V L +A +
Sbjct: 24 IFGKGN-MGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPY-----PALAALAKQY 77
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTGIEA 93
+ K V + + + + + A
Sbjct: 78 ATQLKGKIVVDITNPLNFDTWDDLVVPADSSAA 110
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.5 bits (67), Expect = 0.97
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+ GA G+G A A +AK +G V+ + + + +G D+VL + A
Sbjct: 165 VLGAAGGIGTA-AIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-----EGWAKA 218
Query: 60 IRD 62
+R+
Sbjct: 219 VRE 221
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 29.6 bits (67), Expect = 0.99
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 3 GATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
GA +G L + G DV LI + ++ + K G+ + +E + N+
Sbjct: 12 GA---MGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGL--IADFNGEEVVANLPI 62
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 29.7 bits (67), Expect = 1.0
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 1 ITGATDGLGKAYAEGLA-KLGI-DVVLISRT-------KEKLDNLAKLGIDVVLIS---R 48
+TG T LG A L + G+ ++VL+SR E + L G +V L +
Sbjct: 535 VTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVA 594
Query: 49 TKEKLDNVAAEIRD 62
+E L V A I D
Sbjct: 595 DRETLAKVLASIPD 608
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 29.2 bits (66), Expect = 1.1
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 11 AYAEGLAKLGIDVVLISR----TKEKLDNLAKLGIDVVLISRTKE 51
A+A + LG +V L+ + D L G++ + ++
Sbjct: 64 AFA--IGVLGGEVALVGAAGADFADYRDWLKARGVNCDHVLISET 106
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 29.2 bits (66), Expect = 1.1
Identities = 38/200 (19%), Positives = 53/200 (26%), Gaps = 58/200 (29%)
Query: 16 LAKLGIDVVLISRTKEKLDNLA---KLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIV 72
L VV+ +D+L V KL + V
Sbjct: 23 LRDTNHSVVI-------VDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV 75
Query: 73 ADFTDPKIFAHVEKELTGIE-----AGILVNNVGYSYPYPERFLAVPEKETVYHNIMHCN 127
D + V I+ L VG S P ++ Y N N
Sbjct: 76 GDVRNEDFLNGVFTRHGPIDAVVHMCAFLA--VGESVRDPLKY---------YDN----N 120
Query: 128 VITLLSMCQIVMPHMVEQRKGVVVNI--SSTAAL--IPSPML-----------------S 166
V+ +L + Q M I SS+AA+ P+ S
Sbjct: 121 VVGILRLLQ-AM------LLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPES 173
Query: 167 VYGASKLFVSKFSTDLQSEY 186
YG SKL + D Y
Sbjct: 174 PYGESKLIAERMIRDCAEAY 193
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.4 bits (66), Expect = 1.2
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISR--TKEKLDNLAKL-GIDVV 44
+ GAT G + A +G V + L + + +
Sbjct: 10 VVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLF 56
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 29.2 bits (66), Expect = 1.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
LG AE L G + SR+++ G++ +E+L +
Sbjct: 150 LGAKVAESLQAWGFPLRCWSRSRKSWP-----GVESY---VGREELRAFLNQ 193
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif,
RRM, transcription termination, NUC phosphoprotein; NMR
{Saccharomyces cerevisiae}
Length = 96
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 162 SPMLSVYGASKLFVSKFST------DLQSEYKKHGIIVQC-VMPGY 200
+ M ++ S+LF+ DL + +G I+Q + +
Sbjct: 2 TEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAF 47
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 29.1 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 16 LAK-LGIDVVLISRTKEKL-DNLAKLGIDVVLISRTKEKLDNVA 57
AK G V +IS + K + L G D L+SR +E++ A
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAA 249
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.1 bits (65), Expect = 1.3
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRT--------KEKLDNLAKLGIDVV 44
I G T +GK LG ++ R + L +LG ++
Sbjct: 9 IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 29.0 bits (66), Expect = 1.3
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 16 LAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISR 48
++K +G + +ISR+ K ++ K+G D + +
Sbjct: 198 ISKAMGAETYVISRSSRKREDAMKMGADHYIATL 231
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 29.0 bits (66), Expect = 1.3
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 ITGATDGLGKAYAEGLAKLGI-DVVLISRTKEKLDNLAK 38
+ GA G +A L ++G+ D+ +++RT E+ L
Sbjct: 113 VVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDF 150
Score = 26.7 bits (60), Expect = 6.8
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 36 LAKLGI-DVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADF 75
L ++G+ D+ +++RT E+ + ++ +V
Sbjct: 127 LLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKA 167
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 11 AYAEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A + KLG++ L+S L L I++ + ++E
Sbjct: 49 AVG--IKKLGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEE 93
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 29.1 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 16 LAK-LGIDVVLISRTKEKL-DNLAKLGIDVVLISRTKEKLDNVA 57
+AK +G V +IS + +K + L LG D +I + K+ +A
Sbjct: 199 IAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELA 242
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 28.8 bits (65), Expect = 1.4
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 13 AEGLAKLGIDVVLISR---TKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRD 62
E + L D+V+ R + ++D LA LGI V+ + ++ +A +R
Sbjct: 50 LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWV--DATSIEQIANALRQ 100
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 29.1 bits (66), Expect = 1.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 17 AKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A+LG ++ + + ++NL + I +TK+
Sbjct: 72 ARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKD 112
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 28.6 bits (65), Expect = 1.5
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 28/104 (26%)
Query: 5 TDGLGKAYAEGLAKLGIDV----VLI------SRTKEKLDNLAKLGIDVVLISRTKEKLD 54
TDG+G L +L +L+ SR L L L V + +RT + +
Sbjct: 101 TDGVG--LLSDLERLSFIRPGLRILLIGAGGASRGV--LLPLLSLDCAVTITNRTVSRAE 156
Query: 55 NVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVN 98
+A I A EL G E +++N
Sbjct: 157 ELAKLFAHT--------------GSIQALSMDELEGHEFDLIIN 186
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 28.9 bits (65), Expect = 1.5
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 1 ITGATDG-LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
I G G LG A L G +V + R+ + + G+ ++ T+
Sbjct: 8 IAGC--GDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVH 61
Query: 60 IRD 62
+R
Sbjct: 62 LRP 64
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide KINA transferase; HET: NAD; 2.90A
{Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 29.1 bits (64), Expect = 1.6
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 21 IDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKI 80
+V S ++K LG++V L+ + + A +IR K I +
Sbjct: 111 PSIVFSSEPQDKAPYEKYLGLEVSLVDPDRTFFNVSATKIRTTPFQYWKFIPKEARPFFA 170
Query: 81 FAHVEKELTGIEAGILVNNVGYSYPYPERFLAVPE 115
+LVN + + + E
Sbjct: 171 KTVAILGGESSGKSVLVNKLAAVFNTT----SAWE 201
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 28.6 bits (65), Expect = 1.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 17 AKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A++ D I++ L++ ID I +T E
Sbjct: 51 ARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAE 91
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 28.6 bits (65), Expect = 1.6
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 28/104 (26%)
Query: 5 TDGLGKAYAEGLAKLGIDV----VLI------SRTKEKLDNLAKLGIDVVLISRTKEKLD 54
TDG+G L +L VLI ++ L L + ++VL +RT K
Sbjct: 101 TDGIG--LVTDLQRLNWLRPNQHVLILGAGGATKGV--LLPLLQAQQNIVLANRTFSK-- 154
Query: 55 NVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAGILVN 98
E+ ++++ + + +++N
Sbjct: 155 --TKELAERFQPYGNIQAVSM----------DSIPLQTYDLVIN 186
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 29.1 bits (66), Expect = 1.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 31 EKLDNLAKLGIDVVLIS 47
KL+ + +LG D + IS
Sbjct: 44 SKLEYIKELGADAIWIS 60
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 29.0 bits (66), Expect = 1.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 31 EKLDNLAKLGIDVVLIS 47
KLD L +LGIDV+ +S
Sbjct: 35 SKLDYLKELGIDVIWLS 51
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP:
a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 25/90 (27%)
Query: 3 GATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG--------------------ID 42
GA LG+ + L K G +V R + ++ + D
Sbjct: 9 GA---LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSD 65
Query: 43 VVLISRTKE-KLDNVAAEIRDKYKVDTKVI 71
++L++ K ++ + + V T ++
Sbjct: 66 LLLVT-LKAWQVSDAVKSLASTLPVTTPIL 94
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 28.1 bits (63), Expect = 1.8
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 36 LAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIF--AHVEK 86
L + G +V +IS E + + VI D D + A +++
Sbjct: 22 LNQRGQNVTVISNLPEDDIKQLEQRLGD---NADVIPGDSNDSSVLKKAGIDR 71
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 28.7 bits (64), Expect = 1.8
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISR----------TKEKLDNLAKLGIDVV 44
I G T +G+ K G + R +E +DN LG+ ++
Sbjct: 7 ILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas
mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A
2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Length = 557
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 31 EKLDNLAKLGIDVVLIS 47
EKLD L LGID + I+
Sbjct: 36 EKLDYLKGLGIDAIWIN 52
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 28.7 bits (65), Expect = 1.9
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 17 AKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
++ GI+ LI+ T + + ++ +
Sbjct: 50 SRCGIETRLIAATGNDSNGAWIRQQIKNEPLMLLPDGHFNQ 90
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase
like, antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 28.6 bits (64), Expect = 1.9
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 31 EKLDNLAKLGIDVVLIS 47
+LD L+ L + +++
Sbjct: 40 GRLDYLSSLKVKGLVLG 56
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 28.7 bits (65), Expect = 1.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 31 EKLDNLAKLGIDVVLIS 47
EKLD L LGID + I+
Sbjct: 49 EKLDYLKSLGIDAIWIN 65
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 28.7 bits (65), Expect = 1.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 31 EKLDNLAKLGIDVVLIS 47
EKLD L +LG+D+V I
Sbjct: 35 EKLDYLVELGVDIVWIC 51
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 28.7 bits (65), Expect = 2.0
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 16 LAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTK 50
A +G +V + +R + K + +G+ +
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ 230
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 28.4 bits (64), Expect = 2.0
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISR 48
+TGAT G+G L K G DVV + +E D L +LG V ISR
Sbjct: 156 VTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEV-ISR 202
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 28.7 bits (65), Expect = 2.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 EKLDNLAKLGIDVVLIS 47
KLD L KLG+ + +S
Sbjct: 35 SKLDYLQKLGVMAIWLS 51
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 28.6 bits (65), Expect = 2.2
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 25/81 (30%)
Query: 120 YHNIMHCNVITLLSMCQIVMPHMVEQRKGVVVNI--SSTAAL--IPSPM----------L 165
Y+N NV L + + VM + V SSTAA
Sbjct: 91 YNN----NVYGALCLLE-VM------DEFKVDKFIFSSTAATYGEVDVDLITEETMTNPT 139
Query: 166 SVYGASKLFVSKFSTDLQSEY 186
+ YG +KL + K
Sbjct: 140 NTYGETKLAIEKMLHWYSQAS 160
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR
{Engystomops pustulosus}
Length = 98
Score = 26.9 bits (59), Expect = 2.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 50 KEKLDNVAAEIRDKYKVDTK 69
KE LD +I+DKY VDTK
Sbjct: 25 KELLDKFQDDIKDKYGVDTK 44
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 28.3 bits (62), Expect = 2.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAK 38
+ + L GI V + RT E L+
Sbjct: 15 TRPTLDVLTDSGIKVTVACRTLESAKKLSA 44
Score = 28.0 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 33 LDNLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPK 79
LD L GI V + RT E ++A ++ + I D D
Sbjct: 19 LDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDA 60
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase,
2-keto- gluconate, transferase; HET: CKP ADP; 2.25A
{Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 28.3 bits (64), Expect = 2.6
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
K G + +I++ ++ L G+DV +
Sbjct: 40 CVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPS 84
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 28.4 bits (64), Expect = 2.6
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+A+LG + I + G+DV + +
Sbjct: 57 GVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD 101
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 28.0 bits (63), Expect = 2.7
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 17 AKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
++G L L +L++ GID ++
Sbjct: 77 HRMGGRASLWGAVGDDETGTRILRDLSESGIDTSGMTVAPG 117
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 8 LGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
+G+ A G+ V+ +SR+ + G D V L+ + A+
Sbjct: 151 IGQHIAHTGKHFGMKVLGVSRSGRERA-----GFDQVY---QLPALNKMLAQ 194
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 9 GKAY--AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
G A L+ LG + LD+L + +D+
Sbjct: 55 GNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 105
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.1 bits (62), Expect = 2.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G A+A LA G V+ +++ + G
Sbjct: 16 GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG 47
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 27.6 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 TGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLI 46
TG T+ + + E +A G +V L++ +NLA G D VL
Sbjct: 12 TGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF 55
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 28.2 bits (64), Expect = 2.8
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 17 AKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+ G ++ I+ T + LA ID+ +S K
Sbjct: 52 GRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKG 92
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 27.9 bits (63), Expect = 3.0
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+ + + LI+R K ++ GID I E
Sbjct: 40 CIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNE 84
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKEKL 53
A LA++G+D +++ +L K G+ I+R ++
Sbjct: 51 AAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGNRI 97
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate
kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A
{Enterococcus faecalis}
Length = 346
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKEKL 53
LA ++ LI++ + L KLGI + + +
Sbjct: 41 LANLAHFQLETALITKLPANRLGEAGKAALRKLGISDQWVGEKGDHI 87
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 27.5 bits (62), Expect = 3.5
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 36 LAKLGIDVVLIS-RTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG 94
L G+ + ++ + +A I + + V V + A A
Sbjct: 146 LVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA---------AAD 196
Query: 95 ILVN 98
+VN
Sbjct: 197 GVVN 200
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 7 GLGKAYAEGLAKLGIDVVLIS-RTKEKLDNLAKL 39
G+G A A L G+ + ++ + LA +
Sbjct: 137 GVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 28.0 bits (63), Expect = 3.5
Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 13 AEGLAKLGIDVVLISRTKEKL------------DNLAKLGIDVVLISRTKE-KLDNVAAE 59
E L + GI+V L+ + + +++ +++V + +
Sbjct: 203 VENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVR 262
Query: 60 IRDKYKVDTK-VIVA 73
++ + T +I+A
Sbjct: 263 LKSGSVIQTDMLILA 277
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently
bound FMN, electron transport; HET: FNR; NMR
{Megasphaera elsdenii} SCOP: c.23.5.1
Length = 137
Score = 27.0 bits (60), Expect = 3.6
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 2 TGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAK 38
TG T+ + + G DV + +D++A
Sbjct: 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVAS 46
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.6 bits (61), Expect = 3.6
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISR---------TKEKLDNLAKLGIDVV 44
I G T +GK + +R + + + +G+ ++
Sbjct: 9 IYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII 61
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 27.5 bits (62), Expect = 3.8
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLI 46
A +++ G D ++S E ++ + + +
Sbjct: 31 AYHVSQFGFDSRVVSAVGNDELGDEIMEVFKEKQLKNQIE 70
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 27.6 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G L K+G V + +RT EK D + G
Sbjct: 42 GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG 73
>4erh_A Outer membrane protein A; structural genomics, PSI-biology,
protein structure initiati midwest center for
structural genomics, MCSG; 2.52A {Salmonella enterica
subsp}
Length = 148
Score = 27.0 bits (60), Expect = 4.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 50 KEKLDNVAAEIRDKYKVDTKVIVADFTD 77
++ LD + +++ + D V+V FTD
Sbjct: 38 QQALDQLYSQLSNLDPKDGSVVVLGFTD 65
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.5 bits (62), Expect = 4.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEK 52
+ A LG A A +A+ +G+ V+ + EKL LG + +
Sbjct: 131 VQAAAGALGTA-AVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPE 182
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 27.5 bits (62), Expect = 4.1
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 18/78 (23%)
Query: 13 AEGLAKLGIDVVLISRTKEKL-------------DNLAKLGIDVVLISRTK--EKLDNVA 57
AE + G +VVLI L N+ + GI + K V
Sbjct: 210 AEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVE 269
Query: 58 AEIRDK--YKVDTKVIVA 73
I DK Y VD VI+A
Sbjct: 270 KIITDKNEYDVDM-VILA 286
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 27.5 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G A L + G DV + +R K L LG
Sbjct: 13 GGPMAANLVRAGFDVTVWNRNPAKCAPLVALG 44
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 27.5 bits (62), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G A A+ L K G V + +R+ EK + LA LG
Sbjct: 13 GSAMAKNLVKAGCSVTIWNRSPEKAEELAALG 44
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 27.4 bits (62), Expect = 4.3
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 13 AEGLAKLGIDVVLISRTKEKL-------------DNLAKLGIDVVLISRTKEKLDN--VA 57
AE AK G V +I L + + I + + + V
Sbjct: 165 AEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQ 224
Query: 58 AEIRDK--YKVDTKVIVA 73
+ DK Y D V+VA
Sbjct: 225 KVVTDKNAYDADL-VVVA 241
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 27.5 bits (62), Expect = 4.3
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A L++LG V LISR LD L I I + KE
Sbjct: 61 AVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQIITDGIQQDKE 105
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 27.3 bits (61), Expect = 4.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G A+ L K G V + +R+ K L G
Sbjct: 21 GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG 52
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 27.7 bits (62), Expect = 4.4
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 15 GLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
GL ++G D+V L K G + V+ + + E
Sbjct: 29 GLGRMGADMVR---------RLRKGGHECVVYDLNVNAVQALERE 64
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.80A {Thermus
thermophilus}
Length = 276
Score = 27.5 bits (62), Expect = 4.5
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 10 KAYAEGLAKLGID-VVLIS--RTKEKLDNLAKLGIDVVLISRTKEKLDNVAA 58
+ D ++L S T+ + VVL+ + D+V
Sbjct: 45 RYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVDAQNPRYDSVYL 96
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 27.6 bits (62), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
GKA + L K G V + +RT K D L + G
Sbjct: 33 GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG 64
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.5 bits (62), Expect = 4.8
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 13 AEGLAKLGIDVVLISRTKE--KLD---------NLAKLGIDVVLISRTKEKLDNVAAEIR 61
A LA+ G V LI R LD L + G+ L S E + +
Sbjct: 159 AGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG--VLT 216
Query: 62 DKYKVDTKVIV 72
+ ++ KV +
Sbjct: 217 NSGFIEGKVKI 227
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 27.2 bits (61), Expect = 5.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
G A L + G + + +RT + +LA LG
Sbjct: 43 GLPMARRLCEAGYALQVWNRTPARAASLAALG 74
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 27.4 bits (61), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 31 EKLDNLAKLGIDVVLIS 47
+KLD L +LG+ + +S
Sbjct: 64 QKLDYLNQLGVKALWLS 80
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural
genomics, joint center for structural JCSG; 2.97A
{Corynebacterium glutamicum}
Length = 369
Score = 27.2 bits (61), Expect = 5.2
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 22/75 (29%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNL-AKLG------------IDVVLIS 47
+G + + L L + V + R +N+ A+ ID V I+
Sbjct: 28 PSGQEKQIADEIEDALRNLNLPGVEVFRFN---NNVLARTNRGLASRVMLAGHIDTVPIA 84
Query: 48 RTKEKLDNVAAEIRD 62
DN+ + + D
Sbjct: 85 ------DNLPSRVED 93
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 27.2 bits (61), Expect = 5.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
I G T G+G A LA+ G +V + + K + +LG + R+ ++ AA
Sbjct: 173 IHGGTSGIGTT-AIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRS----EDFAAV 227
Query: 60 IRD 62
I+
Sbjct: 228 IKA 230
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 26.8 bits (60), Expect = 5.4
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 35 NLAKLGIDVVLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKI 80
++ VV+I++ +E + A ++ +I D + +I
Sbjct: 18 SMLSRKYGVVIINKDRELCEEFAKKL------KATIIHGDGSHKEI 57
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 27.2 bits (61), Expect = 5.7
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A +A+LG V + D+ A+ G+ I RT
Sbjct: 43 AVAVARLGGAVQFVGMLGSDMFGDFLFDSFAEAGVVTDGIVRTST 87
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 27.1 bits (61), Expect = 5.9
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 13 AEGLAKLGIDVVLISRTKEKL------------DNLAKLGIDVVLISRTK--EKLDNVAA 58
AE +LG V +I R K I+++ K + + V A
Sbjct: 202 AETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEA 261
Query: 59 EIRDK--YKVDTKVIVA 73
DK YK D V+V+
Sbjct: 262 VETDKGTYKADL-VLVS 277
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 27.1 bits (60), Expect = 6.2
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 4 ATDGL-GKAYAEGLAKLGID-VVLISRT--KEKLDNLAKLGIDVVLISRTKEKLDNVAAE 59
TDG G+ A +LG + V+ + + +E++D + LG + ++ + + +
Sbjct: 118 TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQ 177
Query: 60 IRDKYKVDTKVIVADFTDP 78
+ +V D
Sbjct: 178 HAQQ---HGWEVVQDTAWE 193
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 26.6 bits (59), Expect = 6.2
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 49 TKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELT-----GIEA--GILVNNVG 101
T L ++A K+ + + + + VEK+ I+A I VN+
Sbjct: 117 TPGLLGDLAKSTT---KIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYVNDKV 173
Query: 102 YSYPYP-ERFLAVPEKE 117
+ EKE
Sbjct: 174 IKNFADYDEIKETIEKE 190
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 26.8 bits (60), Expect = 6.4
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 22/89 (24%)
Query: 3 GATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGI-----------------DVVL 45
GA +G A L + LI R + + DV++
Sbjct: 11 GA---VGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVII 67
Query: 46 ISRTKE-KLDNVAAEIRDKYKVDTKVIVA 73
I+ K +LD V + DT +I+A
Sbjct: 68 IA-VKTHQLDAVIPHLTYLAHEDTLIILA 95
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 26.9 bits (60), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVL 45
+TGA+ G+G L KLG V +S + L LG + +L
Sbjct: 152 VTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRIL 196
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 26.7 bits (60), Expect = 6.9
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+ A+ G + L+SR + L L +LG+D ++ +
Sbjct: 48 SVAAARHGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQT 92
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 26.8 bits (60), Expect = 6.9
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
+ + +LG+ +IS + LA G+D+ IS
Sbjct: 44 IDQVTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPL 88
>2lta_A De novo designed protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Artificial gene}
Length = 110
Score = 25.8 bits (56), Expect = 6.9
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLI------SRTKEKLDNLAKLGIDVVLISRTKEKLD 54
I + D + A + G++V ++ R +EK+ L G +V + + + +D
Sbjct: 8 IISSDDTTLEELARKIKDEGLEVYILLKDKDEKRLEEKIQKLKSQGFEVRKV-KDDDDID 66
Query: 55 NVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIE 92
+I+ + V D K K+ +E
Sbjct: 67 KWIDKIKKERPQLEVRKVTDEDQAKQILEDLKKKGSLE 104
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 26.1 bits (58), Expect = 7.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 2 TGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLI 46
TG T+ + A LA G +V + L + G D+VL+
Sbjct: 11 TGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFE-GFDLVLL 54
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 26.7 bits (60), Expect = 7.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLAKLG 40
GK ++ L K G +V+ R E + ++ G
Sbjct: 17 GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG 48
>3nb3_A Outer membrane protein A; virus assembly, cementing protein,
bacteriophage, SF6, shige beta-barrel, icosahedral,
virus; 19.00A {Escherichia coli}
Length = 346
Score = 26.9 bits (59), Expect = 7.3
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 44 VLISRTKEKLDNVAAEIRDKYKVDTKVIVADFTD 77
L + LD + +++ + D V+V +TD
Sbjct: 229 TLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD 262
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 27.1 bits (61), Expect = 7.3
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 18/78 (23%)
Query: 13 AEGLAKLGIDVVLISRTKEKL-------------DNLAKLGIDVVLISRTK--EKLDNVA 57
+ L K+ V + + L +L K + E+ N
Sbjct: 163 IDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGI 222
Query: 58 AEIRDK--YKVDTKVIVA 73
+ D+ I A
Sbjct: 223 VLETSEQEISCDS-GIFA 239
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 26.7 bits (60), Expect = 7.3
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 36 LAKLGIDVVLIS-RTKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELTGIEAG 94
+ G ++I+ R K A + + ++ + L G
Sbjct: 139 FLQAGPSELVIANRDMAK-----ALA----------LRNELDHSRLRISRYEALEGQSFD 183
Query: 95 ILVN 98
I+VN
Sbjct: 184 IVVN 187
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 26.9 bits (60), Expect = 7.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1 ITGATDGLGKAYAEGLAKLGIDVVLISRTKEKLDNLAKLGIDVVLISR 48
+TGAT G+G LAK G V + + D L LG V ++R
Sbjct: 155 VTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV-LAR 201
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
G +KLG+ I + + + +G+D + +E
Sbjct: 51 VIGSSKLGLKAGFIGKIADDQHGRFIESYMRGVGVDTSNLVVDQE 95
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative,
northeast structural genomics consortium; 2.30A {Nostoc
SP} PDB: 2klb_A
Length = 159
Score = 26.0 bits (57), Expect = 8.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 2 TGATDGLGKAYAEGLAKLGIDVVLI 26
G +D L +A G+ K G+ V ++
Sbjct: 15 YGYSDRLAQAIINGITKTGVGVDVV 39
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 26.4 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 16 LAKLGIDVVLISRTKEKLDNLAKL----GIDVVLISRTKEKLD 54
L++LG++ V SR+ + D + +L G+DVVL S E +
Sbjct: 79 LSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQ 121
Score = 26.0 bits (58), Expect = 9.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1 ITGATDGLGKAYAEGLAK-LGIDVVLISRTKEKLDNLAKLGIDVVLISRT 49
I AT G+G A A +AK +G + + + K + L++LG++ V SR+
Sbjct: 44 IHSATGGVGMA-AVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRS 92
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 26.9 bits (60), Expect = 8.1
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 7 GLGKAYAEGLAKLG-IDVVLISRTKEKLDNLAKLGIDVVLISRTKEKLDNVAAEIRD 62
GLG + L + V+ + +EKL +LG D V+ +R + ++ +
Sbjct: 197 GLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR-----RDPVKQVME 248
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 26.8 bits (60), Expect = 8.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 13 AEGLAKLGIDVVLISRT------KEKLDNLAKLGIDVVLISRTKE 51
A GLA+LG+ V SR + L +A GID +
Sbjct: 65 AIGLARLGLKVGWASRLGTDSMGRYLLAAMAAEGIDCSHVVCDAT 109
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 26.7 bits (59), Expect = 8.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 30 KEKLDNLAKLGIDVVLIS 47
+ ++L+ +GI V I
Sbjct: 24 QNDAEHLSDIGITAVWIP 41
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 31 EKLDNLAKLGIDVVLIS 47
+ L +LGID V +
Sbjct: 27 NAVSYLKELGIDFVWLM 43
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 26.8 bits (60), Expect = 8.7
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 21/104 (20%)
Query: 13 AEGLAKLGIDVVLISRTKEKL------------DNLAKLGIDVVLISRTKEKLDNVAAEI 60
E L LGI L+ + + + G+D+ R L
Sbjct: 167 MESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDL----RLGTAL--SEVSY 220
Query: 61 RDKYKVDTKVIVADFTDPKIFAHVEKELTG---IEAGILVNNVG 101
+ + V + D I H+ L+ +E +L+ +G
Sbjct: 221 QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIG 264
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 26.8 bits (60), Expect = 8.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 35 NLAKLGIDVVLISRTKEKLDNVAAEIRDK 63
N+ G V + +R++EK + V AE K
Sbjct: 33 NIESRGYTVSIFNRSREKTEEVIAENPGK 61
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 26.6 bits (59), Expect = 8.9
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 1 ITGATDGL---GKAYAEGLAKLGIDVVLI 26
+ D + AE L K G+DVV
Sbjct: 271 VGCHGDPMIDRQMELAERLEKKGVDVVAQ 299
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 26.3 bits (59), Expect = 9.7
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 9 GKAYAEGLAKLGIDVVLISRTKEKLDNLA-KLGI-------------DVVLISRTKEKLD 54
A +GL + ++++ + E+ +A +L + D+V++ + +
Sbjct: 15 ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFE 74
Query: 55 NVAAEIRDK 63
V + K
Sbjct: 75 TVLKPLHFK 83
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 26.4 bits (59), Expect = 9.9
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 13 AEGLAKLGI-DVVLISRTKEKLDNLA-KLGIDVVLISRTKEKLDNV 56
A+ L G+ V++ +RT E+ LA LG + V + L
Sbjct: 183 AKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS 228
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 26.2 bits (57), Expect = 10.0
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 20/151 (13%)
Query: 32 KLDNLAKLGIDVVLISR--TKEKLDNVAAEIRDKYKVDTKVIVADFTDPKIFAHVEKELT 89
+L L G + L+S K + I++K + D + F +P +
Sbjct: 28 RLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYE 87
Query: 90 GIEAGILVNNVGYSYPYPERFLAV-----PE---------KETVYHNIMHCNVITLLSMC 135
I + + ++ + KE + NV +C
Sbjct: 88 YIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQL-VNVADKPDLC 146
Query: 136 QIVMPHMVEQRKGVVVNISSTAALIPSPMLS 166
+E + + IS+ SP
Sbjct: 147 DFYFGANLEIGDRLQILISTNGL---SPRFG 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,849,218
Number of extensions: 234117
Number of successful extensions: 2238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 474
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)