Query psy5439
Match_columns 381
No_of_seqs 234 out of 808
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 17:32:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzw_A Alpha1,3-fucosyltransfe 100.0 1E-62 3.5E-67 492.2 12.2 272 91-369 22-357 (371)
2 3qhp_A Type 1 capsular polysac 92.0 0.25 8.5E-06 41.0 5.8 103 213-329 44-147 (166)
3 3okp_A GDP-mannose-dependent a 57.6 20 0.00067 33.1 6.6 58 269-330 295-352 (394)
4 2l60_A Peptide YY; GPCR ligand 54.5 7.7 0.00026 26.9 2.4 16 304-319 13-28 (41)
5 2bfw_A GLGA glycogen synthase; 46.9 17 0.00058 30.5 4.0 78 246-330 111-189 (200)
6 1vgv_A UDP-N-acetylglucosamine 38.8 13 0.00046 34.5 2.2 55 273-330 296-350 (384)
7 1v4v_A UDP-N-acetylglucosamine 36.9 18 0.00063 33.6 2.8 61 268-331 283-343 (376)
8 2jjm_A Glycosyl transferase, g 35.9 56 0.0019 30.4 6.1 58 269-329 300-357 (394)
9 1f8p_A Neuropeptide Y (PNPY); 35.5 11 0.00039 25.5 0.8 17 304-320 9-25 (37)
10 3beo_A UDP-N-acetylglucosamine 33.7 20 0.00068 33.1 2.5 55 273-330 296-350 (375)
11 1k8v_A Neuropeptide F; moniezi 32.4 11 0.00039 25.9 0.4 18 303-320 11-28 (40)
12 2gek_A Phosphatidylinositol ma 28.1 30 0.001 32.1 2.7 77 247-329 279-356 (406)
13 2iw1_A Lipopolysaccharide core 27.6 26 0.00089 32.1 2.1 58 269-329 286-344 (374)
14 3h16_A TIR protein; bacteria T 24.6 1.8E+02 0.0062 24.2 6.8 72 249-321 72-153 (154)
15 2x6q_A Trehalose-synthase TRET 23.1 61 0.0021 30.4 3.8 55 269-329 331-386 (416)
No 1
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=100.00 E-value=1e-62 Score=492.17 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=206.8
Q ss_pred CCCeEEEEeccCCCCcc----ccCCCCCCCCCCCCcEEEecCCCCCc-----------------------eEEEEecCCC
Q psy5439 91 KNVKKILLFNALTSWNV----KLGSSMFSNCPVNACALTTNKAESPF-----------------------VWALYFLECP 143 (381)
Q Consensus 91 ~~~k~ILlw~~~~~w~~----~~g~~~f~~C~v~~C~iT~dr~~~~~-----------------------~wv~~s~EsP 143 (381)
.+.+.||+|+. .|+. +.|...|..|++.+|.||.||+.+.+ +||++++|||
T Consensus 22 ~k~~~iL~w~~--~wg~~~~~~~~~~~~~~c~~~~C~iT~dr~~~~~aDvVFh~~~~~~~~lp~~R~~~Q~fv~~~~EsP 99 (371)
T 2nzw_A 22 SPPPLKIAVAN--WWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESP 99 (371)
T ss_dssp CCCEEEEECCT--TCCHHHHHHHHTSHHHHHHHTTSEEEEECCTTBCCSEEEECCCTHHHHHHHHHCSEEEECCSSSCCC
T ss_pred CCCCEEEEEEC--CCCCCcccccccccccccCCCCeEEeeCCCccccccEEEcCCCcccccCCCCCCCCCEEEEEeecCC
Confidence 46678888874 3442 34666678899999999999986432 8999999999
Q ss_pred cCCCC--------CCc-cccccceeeeccC-------CCccCCccccee--c-cccccCCChhh-------h-ccccccC
Q psy5439 144 YHTQH--------VAH-NDVFNWTATYRSD-------SDIVTPYEKWVY--Y-DDRHKQMPLDK-------M-KNYAANK 196 (381)
Q Consensus 144 ~~~~~--------~~~-~~~FNwTMTYR~D-------SDI~~pYg~~~~--~-~~~~~~~~~~~-------~-~~~~~~K 196 (381)
.++.. ..+ +++||||||||+| |||+.|||.... + ........... + ......|
T Consensus 100 ~~~~~d~~ig~d~~~~~~~~FN~TmtYr~d~~~~~~~SDi~~pYg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~K 179 (371)
T 2nzw_A 100 NFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLK 179 (371)
T ss_dssp CTTTCSEEEESSCCBCGGGEEECCHHHHHHHHHHHHTCBTTCSSCCCTTSGGGSSCCBSCHHHHCHHHHHHHTTSSCTTS
T ss_pred ccccccccccccccccCCCeEEEEEEeeeccccccccCceeccCccccccchhcccccccccccchhhhhhhhccccCCC
Confidence 87652 234 6899999999999 999999995210 0 00000000000 0 1123579
Q ss_pred cceEEEEEeccCCcchHHHHHHHHhcCCeEeEcCCCCCCCCCCchhHHHhhcccceEEEeeccCCCCccchHHHHHhhhc
Q psy5439 197 THKVAWFVSNCGAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKFYLAFENSNCVDYITEKLYINGLS 276 (381)
Q Consensus 197 ~k~vaw~vSnC~~~~~R~~yv~eL~k~i~VD~yG~C~~~~c~~~~~c~~~l~~~YKFyLAfENS~c~DYVTEKl~~~al~ 276 (381)
+++|+||+|||.+ ..|.+|+++|+++++||+||+|+++.|... .|...++++||||||||||+|+|||||||| +||.
T Consensus 180 ~k~v~wvvSnc~~-~~R~~~~~~L~k~i~Vd~~G~c~~~~~~~~-~~~~~~l~~YKFyLafENs~c~dYvTEK~~-~al~ 256 (371)
T 2nzw_A 180 RGFASFVASNPNA-PIRNAFYDALNSIEPVTGGGSVRNTLGYNV-KNKNEFLSQYKFNLCFENTQGYGYVTEKII-DAYF 256 (371)
T ss_dssp SEEEEECCSCCCC-HHHHHHHHHHTTTSCCEECSSTTCCSSSCC-SCHHHHHTTEEEEEEECSSCCTTCCCTHHH-HHHH
T ss_pred ceEEEEEEeCCCc-HHHHHHHHHHhCcCCEeeCCCccCCCCCcc-ccHHHHHhcCcEEEEEeccCCCCcccHHHH-HHHh
Confidence 9999999999987 589999999999999999999998754322 334455699999999999999999999999 8999
Q ss_pred CCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHHhhhhccCcccc------cccchHHhHH
Q psy5439 277 HNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSYFRWKGTGEFVN------TFFWCRLCAM 350 (381)
Q Consensus 277 ~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Yf~Wr~~~~~~~------~~~~C~LC~~ 350 (381)
+|+||||+|++ ++.+++||+|||+++||+||++||+||+.|++|+++|++||+||....+.. ..++|.||+.
T Consensus 257 ~g~VPI~~G~~--~~~~~~Pp~SfI~~~dF~s~~~La~yL~~L~~n~~~Y~~y~~w~~~~~i~~~~~~y~~~~~c~lc~~ 334 (371)
T 2nzw_A 257 SHTIPIYWGSP--SVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAF 334 (371)
T ss_dssp TTCEEEEESCT--TGGGTSCGGGSEEGGGSSSHHHHHHHHHHHHTCHHHHHHHHHSCSSCEETTEECCGGGCCHHHHHHH
T ss_pred CCeEEEEECCC--chhhhCCCCceEEcccCCCHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccccccccchhHHHHH
Confidence 99999999997 678999999999999999999999999999999999999999997653321 2357999987
Q ss_pred hhh---C-CCCceecchhhhcCC
Q psy5439 351 LHD---S-FPIKSYSDINEWWRG 369 (381)
Q Consensus 351 L~~---~-~~~k~y~dl~~Ww~~ 369 (381)
+.. + ...++++++..||.+
T Consensus 335 l~~~~~~~~~~~~~p~~~~~~~~ 357 (371)
T 2nzw_A 335 FKTILENDTIYHDNPFIFCRDLN 357 (371)
T ss_dssp HHHHHHCCBCCSCCC--------
T ss_pred HHHHhcCCceEeecCccccccCC
Confidence 644 2 344678888888766
No 2
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=91.96 E-value=0.25 Score=41.02 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred HHHHHHHHhcC-CeEeEcCCCCCCCCCCchhHHHhhcccceEEEeeccCCCCccchHHHHHhhhcCCcceEEEcCCcccc
Q psy5439 213 RLQYAHELGKY-IEVDIYGSCGSKKCPRISKCFRLLDTKYKFYLAFENSNCVDYITEKLYINGLSHNVLPIVMGARPEDY 291 (381)
Q Consensus 213 R~~yv~eL~k~-i~VD~yG~C~~~~c~~~~~c~~~l~~~YKFyLAfENS~c~DYVTEKl~~~al~~g~VPIv~G~~~~dy 291 (381)
+..+.+.+.+. +.|.. |.... .-...+++....++.. |..+.+=. ++. +|+..|+|||+........
T Consensus 44 ~~~~~~~~~~~~~~v~~-g~~~~-------~~~~~~~~~adv~v~p--s~~e~~~~-~~~-Eama~G~vPvi~~~~~~~~ 111 (166)
T 3qhp_A 44 EKKIKLLAQKLGVKAEF-GFVNS-------NELLEILKTCTLYVHA--ANVESEAI-ACL-EAISVGIVPVIANSPLSAT 111 (166)
T ss_dssp HHHHHHHHHHHTCEEEC-CCCCH-------HHHHHHHTTCSEEEEC--CCSCCCCH-HHH-HHHHTTCCEEEECCTTCGG
T ss_pred HHHHHHHHHHcCCeEEE-eecCH-------HHHHHHHHhCCEEEEC--CcccCccH-HHH-HHHhcCCCcEEeeCCCCch
Confidence 44444433332 46666 65432 1223344566655542 22333322 677 6999999999994322234
Q ss_pred ccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHH
Q psy5439 292 KKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSY 329 (381)
Q Consensus 292 ~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Y 329 (381)
..++..+.. +-+..++++||+.|..|.+|++.+.++
T Consensus 112 ~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~ 147 (166)
T 3qhp_A 112 RQFALDERS--LFEPNNAKDLSAKIDWWLENKLERERM 147 (166)
T ss_dssp GGGCSSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhccCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 455555544 334568999999999999999877665
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=57.56 E-value=20 Score=33.15 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHhhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHHh
Q psy5439 269 KLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSYF 330 (381)
Q Consensus 269 Kl~~~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Yf 330 (381)
++. +|+..| +||+.... .....++..+.=+ +-+-.++++||+-|..|.+|++.+.++-
T Consensus 295 ~~~-Ea~a~G-~PvI~~~~-~~~~e~i~~~~g~-~~~~~d~~~l~~~i~~l~~~~~~~~~~~ 352 (394)
T 3okp_A 295 VYL-EAQACG-VPVIAGTS-GGAPETVTPATGL-VVEGSDVDKLSELLIELLDDPIRRAAMG 352 (394)
T ss_dssp HHH-HHHHTT-CCEEECSS-TTGGGGCCTTTEE-ECCTTCHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHH-HHHHcC-CCEEEeCC-CChHHHHhcCCce-EeCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 777 699999 56666543 2344556554222 2233479999999999999998877653
No 4
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=54.49 E-value=7.7 Score=26.85 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5439 304 DDFPSAKHLAEYLNKL 319 (381)
Q Consensus 304 ~dF~S~~eLA~yL~~L 319 (381)
.+++||++||.|+..|
T Consensus 13 g~~aspEela~Y~~~L 28 (41)
T 2l60_A 13 LKKLSPEELNRYYASL 28 (41)
T ss_dssp HTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3688999999999988
No 5
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=46.89 E-value=17 Score=30.47 Aligned_cols=78 Identities=12% Similarity=0.021 Sum_probs=46.9
Q ss_pred hhcccceEEEeeccCCCCccchHHHHHhhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHcc-CHH
Q psy5439 246 LLDTKYKFYLAFENSNCVDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDA-NDT 324 (381)
Q Consensus 246 ~l~~~YKFyLAfENS~c~DYVTEKl~~~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~-n~~ 324 (381)
.+++...++|.. |..+. ..=++. +|+..|+..|+... .....++ .+..-.+-+..++++||+-|..|.+ |++
T Consensus 111 ~~~~~ad~~l~p--s~~e~-~~~~~~-Ea~a~G~PvI~~~~--~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 183 (200)
T 2bfw_A 111 ELYGSVDFVIIP--SYFEP-FGLVAL-EAMCLGAIPIASAV--GGLRDII-TNETGILVKAGDPGELANAILKALELSRS 183 (200)
T ss_dssp HHHTTCSEEEEC--CSCCS-SCHHHH-HHHHTTCEEEEESC--HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCCHH
T ss_pred HHHHHCCEEEEC--CCCCC-ccHHHH-HHHHCCCCEEEeCC--CChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcCHH
Confidence 344666666652 22222 234677 69999965555432 2334445 2222222234579999999999999 998
Q ss_pred HHHHHh
Q psy5439 325 LYNSYF 330 (381)
Q Consensus 325 ~Y~~Yf 330 (381)
.+.++-
T Consensus 184 ~~~~~~ 189 (200)
T 2bfw_A 184 DLSKFR 189 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 6
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=38.76 E-value=13 Score=34.47 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred hhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHHh
Q psy5439 273 NGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSYF 330 (381)
Q Consensus 273 ~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Yf 330 (381)
+|+..| +|||..........++-.|.-+.+.. ++++||+-|..|.+|++++.++-
T Consensus 296 EA~a~G-~PvI~~~~~~~~~e~v~~g~g~lv~~--d~~~la~~i~~ll~d~~~~~~~~ 350 (384)
T 1vgv_A 296 EAPSLG-KPVLVMRDTTERPEAVTAGTVRLVGT--DKQRIVEEVTRLLKDENEYQAMS 350 (384)
T ss_dssp TGGGGT-CCEEEESSCCSCHHHHHHTSEEEECS--SHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHcC-CCEEEccCCCCcchhhhCCceEEeCC--CHHHHHHHHHHHHhChHHHhhhh
Confidence 688888 68886542112223333344455544 89999999999999999888775
No 7
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=36.86 E-value=18 Score=33.55 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHhhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHHhh
Q psy5439 268 EKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSYFR 331 (381)
Q Consensus 268 EKl~~~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Yf~ 331 (381)
|-+..+|+..| +|||......+...++..+.-+.+. .++++||+-|..|-+|++.+.++-.
T Consensus 283 ~g~~lEA~a~G-~PvI~~~~~~~~~~~~~~g~g~lv~--~d~~~la~~i~~ll~d~~~~~~~~~ 343 (376)
T 1v4v_A 283 GGLQEEGAALG-VPVVVLRNVTERPEGLKAGILKLAG--TDPEGVYRVVKGLLENPEELSRMRK 343 (376)
T ss_dssp HHHHHHHHHTT-CCEEECSSSCSCHHHHHHTSEEECC--SCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHcC-CCEEeccCCCcchhhhcCCceEECC--CCHHHHHHHHHHHHhChHhhhhhcc
Confidence 55543688888 7888753211222222223334443 4899999999999999999888764
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.87 E-value=56 Score=30.43 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=36.6
Q ss_pred HHHHhhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHH
Q psy5439 269 KLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSY 329 (381)
Q Consensus 269 Kl~~~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Y 329 (381)
++. +|+..| +|||.-.. ....+++..+.---+-+-.++++||+-|..|.+|++.+.++
T Consensus 300 ~~~-EAma~G-~PvI~~~~-~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~ 357 (394)
T 2jjm_A 300 VLL-EAMACG-VPCIGTRV-GGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNM 357 (394)
T ss_dssp HHH-HHHHTT-CCEEEECC-TTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHH-HHHhcC-CCEEEecC-CChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 677 699999 45554322 23345554321111223347999999999999998877655
No 9
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=35.54 E-value=11 Score=25.50 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHc
Q psy5439 304 DDFPSAKHLAEYLNKLD 320 (381)
Q Consensus 304 ~dF~S~~eLA~yL~~L~ 320 (381)
.+++++++||+|+..|.
T Consensus 9 g~~a~pEela~Y~~~Lr 25 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALR 25 (37)
T ss_dssp CSSCTTTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 36689999999999883
No 10
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=33.67 E-value=20 Score=33.09 Aligned_cols=55 Identities=5% Similarity=0.077 Sum_probs=36.5
Q ss_pred hhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHHHHHHh
Q psy5439 273 NGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTLYNSYF 330 (381)
Q Consensus 273 ~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Yf 330 (381)
+|+..| +|||.+........++-.+.-+-+.. ++++||+-|..|.+|++++.++-
T Consensus 296 EA~a~G-~Pvi~~~~~~~~~e~v~~g~g~~v~~--d~~~la~~i~~ll~~~~~~~~~~ 350 (375)
T 3beo_A 296 EAPSLG-VPVLVLRDTTERPEGIEAGTLKLAGT--DEETIFSLADELLSDKEAHDKMS 350 (375)
T ss_dssp HHHHHT-CCEEECSSCCSCHHHHHTTSEEECCS--CHHHHHHHHHHHHHCHHHHHHHC
T ss_pred HHHhcC-CCEEEecCCCCCceeecCCceEEcCC--CHHHHHHHHHHHHhChHhHhhhh
Confidence 688888 68886632111223333344344442 89999999999999998888763
No 11
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=32.39 E-value=11 Score=25.90 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.7
Q ss_pred cCCCCCHHHHHHHHHHHc
Q psy5439 303 VDDFPSAKHLAEYLNKLD 320 (381)
Q Consensus 303 v~dF~S~~eLA~yL~~L~ 320 (381)
-..|+|+++|-.||+.|+
T Consensus 11 p~~F~s~~~l~~YL~~Ln 28 (40)
T 1k8v_A 11 DLVLDNKAALRDYLRQIN 28 (40)
T ss_dssp TCSCSSCSHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHH
Confidence 356899999999999994
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=28.11 E-value=30 Score=32.11 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=46.2
Q ss_pred hcccceEEEeeccCC-CCccchHHHHHhhhcCCcceEEEcCCccccccCCCCCCccccCCCCCHHHHHHHHHHHccCHHH
Q psy5439 247 LDTKYKFYLAFENSN-CVDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDANDTL 325 (381)
Q Consensus 247 l~~~YKFyLAfENS~-c~DYVTEKl~~~al~~g~VPIv~G~~~~dy~~~~Pp~SfI~v~dF~S~~eLA~yL~~L~~n~~~ 325 (381)
+++...++|.. |. .+.+ .=++. +|+..|+ ||+.... ....+++..+..--+-+..++++||+-|..|.+|++.
T Consensus 279 ~~~~adv~v~p--s~~~e~~-~~~~~-Ea~a~G~-PvI~~~~-~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~ 352 (406)
T 2gek_A 279 AMRSADVYCAP--HLGGESF-GIVLV-EAMAAGT-AVVASDL-DAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQL 352 (406)
T ss_dssp HHHHSSEEEEC--CCSCCSS-CHHHH-HHHHHTC-EEEECCC-HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHH
T ss_pred HHHHCCEEEec--CCCCCCC-chHHH-HHHHcCC-CEEEecC-CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHH
Confidence 34555666654 21 2232 23677 6999995 5554432 2344444433222233446899999999999999988
Q ss_pred HHHH
Q psy5439 326 YNSY 329 (381)
Q Consensus 326 Y~~Y 329 (381)
+.++
T Consensus 353 ~~~~ 356 (406)
T 2gek_A 353 RAGY 356 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 13
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=27.57 E-value=26 Score=32.09 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=35.7
Q ss_pred HHHHhhhcCCcceEEEcCCccccccCCCC-CCccccCCCCCHHHHHHHHHHHccCHHHHHHH
Q psy5439 269 KLYINGLSHNVLPIVMGARPEDYKKAAPM-NSYIHVDDFPSAKHLAEYLNKLDANDTLYNSY 329 (381)
Q Consensus 269 Kl~~~al~~g~VPIv~G~~~~dy~~~~Pp-~SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Y 329 (381)
++. +|+..|+ |||.-... ...+++.. +.=+-+.+-.++++||+-|..|.+|++.+.++
T Consensus 286 ~~~-Ea~a~G~-Pvi~~~~~-~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~ 344 (374)
T 2iw1_A 286 VLL-EAITAGL-PVLTTAVC-GYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAW 344 (374)
T ss_dssp HHH-HHHHHTC-CEEEETTS-TTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHH-HHHHCCC-CEEEecCC-CchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHH
Confidence 677 6999996 55543211 11222221 22223333458999999999999999887765
No 14
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=24.64 E-value=1.8e+02 Score=24.19 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=44.4
Q ss_pred ccceEEEee--ccCCCCccchHHHHHhhhc------CCcceEEEcCCccccccCCC-CCCccccC-CCCCHHHHHHHHHH
Q psy5439 249 TKYKFYLAF--ENSNCVDYITEKLYINGLS------HNVLPIVMGARPEDYKKAAP-MNSYIHVD-DFPSAKHLAEYLNK 318 (381)
Q Consensus 249 ~~YKFyLAf--ENS~c~DYVTEKl~~~al~------~g~VPIv~G~~~~dy~~~~P-p~SfI~v~-dF~S~~eLA~yL~~ 318 (381)
++-++.|++ +|...-.++.+.+- .|+. .-+|||.++-.+.++....| -+....++ ...+++++|+.|..
T Consensus 72 ~~s~~~i~v~S~~y~~S~wc~~El~-~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~ia~~l~~ 150 (154)
T 3h16_A 72 GSSRFGIVVLSTHFFKKEWPQKELD-GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDEIVADLMA 150 (154)
T ss_dssp TSEEEEEEEEEHHHHTTCCCHHHHH-HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHHHHHHHHHH
T ss_pred HhCcEEEEEeCcchhcChHHHHHHH-HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHHHHHHHHHH
Confidence 445554444 67666667766664 3554 35999999977666554332 11122222 35589999999998
Q ss_pred Hcc
Q psy5439 319 LDA 321 (381)
Q Consensus 319 L~~ 321 (381)
|-+
T Consensus 151 lvr 153 (154)
T 3h16_A 151 IIR 153 (154)
T ss_dssp HHC
T ss_pred Hhc
Confidence 864
No 15
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=23.14 E-value=61 Score=30.43 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=34.8
Q ss_pred HHHHhhhcCCcceEEEcCCccccccCCCCC-CccccCCCCCHHHHHHHHHHHccCHHHHHHH
Q psy5439 269 KLYINGLSHNVLPIVMGARPEDYKKAAPMN-SYIHVDDFPSAKHLAEYLNKLDANDTLYNSY 329 (381)
Q Consensus 269 Kl~~~al~~g~VPIv~G~~~~dy~~~~Pp~-SfI~v~dF~S~~eLA~yL~~L~~n~~~Y~~Y 329 (381)
++. +|+..|+ |||.-.. ....+++..+ .-+-++ ++++||+-|..+.+|++.+.++
T Consensus 331 ~~l-EAma~G~-PvI~~~~-~g~~e~i~~~~~g~l~~---d~~~la~~i~~ll~~~~~~~~~ 386 (416)
T 2x6q_A 331 TVT-EAMWKGK-PVIGRAV-GGIKFQIVDGETGFLVR---DANEAVEVVLYLLKHPEVSKEM 386 (416)
T ss_dssp HHH-HHHHTTC-CEEEESC-HHHHHHCCBTTTEEEES---SHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHH-HHHHcCC-CEEEccC-CCChhheecCCCeEEEC---CHHHHHHHHHHHHhCHHHHHHH
Confidence 566 6999995 5554322 1223334322 222333 7999999999999999877654
Done!