RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5439
(381 letters)
>gnl|CDD|216152 pfam00852, Glyco_transf_10, Glycosyltransferase family 10
(fucosyltransferase). This family of
Fucosyltransferases are the enzymes transferring fucose
from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This
family is know as glycosyltransferase family 10.
Length = 353
Score = 244 bits (626), Expect = 2e-78
Identities = 96/242 (39%), Positives = 132/242 (54%), Gaps = 15/242 (6%)
Query: 135 WALYFLECPYHTQHVAH-NDVFNWTATYRSDSDIVTPYEKWVYYDDRHKQMPLDKMKNYA 193
W + +E P ++ + +FNWT TYR DSDI PY Y + +
Sbjct: 117 WVWFNMESPSNSPRLPGLEGLFNWTMTYRRDSDIFVPYG---YLVPLEGPEEVRVLPEIL 173
Query: 194 ANKTHKVAWFVSNCGAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKF 253
K+ VAW VSNC + R++Y EL K+IEVD+YG C P C+ ++YKF
Sbjct: 174 EKKSKLVAWVVSNCNEPSKRVKYYRELSKHIEVDVYGKCFGDPLPD--GCYLPTLSQYKF 231
Query: 254 YLAFENSNCVDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLA 313
YLAFENS C DYITEKL+ N L+ +P+V+G +Y+ P +S+IHVDDF S K LA
Sbjct: 232 YLAFENSLCKDYITEKLW-NALAAGAVPVVLGPPRANYENFVPPDSFIHVDDFASPKELA 290
Query: 314 EYLNKLDANDTLYNSYFRW----KGTGEFVNTFF---WCRLCAMLHDSFPI-KSYSDINE 365
EYL LD ND Y YF W + + + +F+ +C+ C L + P K Y D+N
Sbjct: 291 EYLKSLDKNDDEYRRYFEWRKKYRVANQRLLSFWREPYCQACDRLQRAEPRYKVYKDLNG 350
Query: 366 WW 367
W+
Sbjct: 351 WF 352
>gnl|CDD|177185 MTH00126, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 98
Score = 29.5 bits (67), Expect = 0.75
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 98 LFNALTSWNVKLGSSMFSNCPV-----NAC 122
LF AL+ W ++L S+ FS P+ +AC
Sbjct: 40 LFIALSLWALQLESTSFSAAPMLLLAFSAC 69
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 31.2 bits (71), Expect = 1.1
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 29/103 (28%)
Query: 2 TEINQKRGEYLRNSKLEDPEYSEGDDSYVETDFSFEEKYW---FMK-----NGTRKPTPA 53
TEI RGE++ K +PE+ E +D YVE W FM+ +G P P
Sbjct: 162 TEIYYDRGEFVGG-KPGEPEFFEENDRYVE--------VWNLVFMQFNRDPDGNYTPLPK 212
Query: 54 QINPRTNRRDSKLWPKEDPGQDRIVNQLMYVPNNYDSKNVKKI 96
+ D+ + G +R V L VP NYD+ +
Sbjct: 213 KN------IDTGM------GLERFVAVLQGVPTNYDTDIFLPL 243
>gnl|CDD|220663 pfam10266, Strumpellin, Hereditary spastic paraplegia protein
strumpellin. This is a family of proteins conserved
from plants to humans, in which two closely situated
point mutations in the human protein lead to the
condition of hereditary spastic paraplegia. Strumpellin
contains one known domain called a spectrin repeat that
consists of three alpha-helices of a characteristic
length wrapped in a left-handed coiled coil. The
spectrin proteins have multiple copies of this repeat,
which can then form multimers in the cell. Spectrin
associates with the cell membrane via spectrin repeats
in the ankyrin protein. The spectrin repeat is a
structural platform for cytoskeletal protein assemblies.
Length = 1077
Score = 30.0 bits (68), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 325 LYNSYFRWKGTGEFVNTFFWCRLCA 349
L SY+R+KG+G+ N C+LC
Sbjct: 141 LLVSYYRYKGSGDISNIDEVCKLCR 165
>gnl|CDD|193419 pfam12946, EGF_MSP1_1, MSP1 EGF domain 1. This EGF-like domain is
found at the C-terminus of the malaria parasite MSP1
protein. MSP1 is the merozoite surface protein 1. This
domain is part of the C-terminal fragment that is
proteolytically processed from the the rest of the
protein and is left attached to the surface of the
invading parasite.
Length = 37
Score = 25.4 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 232 CGSKKCPRISKCFRLLDTKY--KFYLAF--ENSNCV 263
C CP + CFR LD + + L + E CV
Sbjct: 2 CIKTNCPANAGCFRYLDGREECRCLLGYKKEGGKCV 37
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase.
Length = 486
Score = 28.3 bits (63), Expect = 7.6
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 127 NKAESPFVWA-----LYFLECPYHTQHVAHNDVFNWTATYRSDSDIVTPYEKWVYYDDRH 181
NKA+ F +A Y ECP++ + +ND W AT W+Y +
Sbjct: 209 NKAKLLFKFAKAHKGTYDGECPFYCSYSGYNDELLWAAT-------------WLYKATK- 254
Query: 182 KQMPLDKMKNYAAN 195
KQM L +K+ A +
Sbjct: 255 KQMYLKYIKHEAIS 268
>gnl|CDD|240437 PTZ00487, PTZ00487, ceramidase; Provisional.
Length = 715
Score = 28.4 bits (63), Expect = 8.4
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 170 PYEKWVYYDDRHKQMPLDKMKNYAANKTHKVAWFVSNCGAKNN 212
EK +Y + K M + ++++ N +++F +C + NN
Sbjct: 205 EEEKAMYDGNVDKNMTVLRIEDMNGNPFAAISFFAVHCTSMNN 247
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.437
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,205,028
Number of extensions: 1773114
Number of successful extensions: 1339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 12
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)