RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5439
(381 letters)
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
{Helicobacter pylori [TaxId: 210]}
Length = 349
Score = 127 bits (320), Expect = 4e-34
Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 9/223 (4%)
Query: 144 YHTQHVAHNDVFNWTATYRSDSDIVTPYEKWVY-YDDRHKQMPLDKMKNYAANKTHKVAW 202
Y H V + TA Y+ + + +K + + ++H + K ++
Sbjct: 126 YDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASF 185
Query: 203 FVSNCGAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKFYLAFENSNC 262
SN A R + L V GS + + L +YKF L FEN+
Sbjct: 186 VASNPNAPI-RNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLS-QYKFNLCFENTQG 243
Query: 263 VDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKLDAN 322
Y+TEK+ + + +PI G+ K S+++V DF + +Y+ L +
Sbjct: 244 YGYVTEKII-DAYFSHTIPIYWGS--PSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTH 300
Query: 323 DTLYNSYFRWKGTGEFVNTFFWCRLCAMLHDSFPIKSYSDINE 365
Y L + + I E
Sbjct: 301 KNAYLDMLYEN---PLNTLDGKAYFYQNLSFKKILAFFKTILE 340
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 32.1 bits (71), Expect = 0.079
Identities = 13/134 (9%), Positives = 27/134 (20%), Gaps = 2/134 (1%)
Query: 92 NVKKILLFNALTSWNVKLGSSMFSNCPVNACALTTNKAESPFVWALYFLECPYHTQHVAH 151
N K N LT+ +S + Y
Sbjct: 26 NAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW 85
Query: 152 NDVFNWTATYRSDSDIVTPYEKWVYYDDRHKQMPLDKMKNYAANKTHKVAWFVSNCGAKN 211
R + + Q ++ + N V ++ A
Sbjct: 86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLASG 143
Query: 212 NRLQYAHELGKYIE 225
R + + + +
Sbjct: 144 ARKAQLNMVREAVL 157
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.20
Identities = 14/135 (10%), Positives = 27/135 (20%)
Query: 92 NVKKILLFNALTSWNVKLGSSMFSNCPVNACALTTNKAESPFVWALYFLECPYHTQHVAH 151
NV K LFN L + ++ + +
Sbjct: 10 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQK 69
Query: 152 NDVFNWTATYRSDSDIVTPYEKWVYYDDRHKQMPLDKMKNYAANKTHKVAWFVSNCGAKN 211
+D + K + + A + +
Sbjct: 70 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREV 129
Query: 212 NRLQYAHELGKYIEV 226
Y+ G+ I V
Sbjct: 130 KPELYSLGFGEPIPV 144
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.2 bits (56), Expect = 5.4
Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 4/167 (2%)
Query: 92 NVKKILLFNALTSWNVKLGSSMFSNCPVNACALTTNKAESPFVWALYFLECPYHTQHV-A 150
NV K LFNA+ + L S + L +
Sbjct: 18 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTV 77
Query: 151 HNDVFNWTATYRSDSDIV---TPYEKWVYYDDRHKQMPLDKMKNYAANKTHKVAWFVSNC 207
+D+V + + D+ +++ + +K V
Sbjct: 78 EKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE 137
Query: 208 GAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKFY 254
+ + E +I+ + K I + ++ Y Y
Sbjct: 138 KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 184
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 26.1 bits (57), Expect = 5.8
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 262 CVDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHV------DDFPSAKHLAEY 315
+ YI KL G + V R E + +H+ DDF ++ ++
Sbjct: 13 VMKYIHYKLSQRGYEWDAGDDVEENRTE--APEGTESEVVHLALRQAGDDFSR-RYRGDF 69
Query: 316 ---LNKLDANDTLYNSYFRWKGTGEFVNTFFWCRLCAML 351
++L F F + W R+ A
Sbjct: 70 AEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFF 108
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/178 (7%), Positives = 37/178 (20%), Gaps = 3/178 (1%)
Query: 145 HTQHVAHNDVFNWTATYRSDSDIVTPYEKWVYYDDRH---KQMPLDKMKNYAANKTHKVA 201
H + +D+ + + R + Y + + + +
Sbjct: 52 HNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFT 111
Query: 202 WFVSNCGAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKFYLAFENSN 261
+ Y + + Y + +K + L + Y
Sbjct: 112 RQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPL 171
Query: 262 CVDYITEKLYINGLSHNVLPIVMGARPEDYKKAAPMNSYIHVDDFPSAKHLAEYLNKL 319
+ ++ + S+ + S + N L
Sbjct: 172 LNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNIL 229
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 25.7 bits (55), Expect = 8.4
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 3/133 (2%)
Query: 194 ANKTHKVAWFVSNCGAKNNRLQYAHELGKYIEVDIYGSCGSKKCPRISKCFRLLDTKYKF 253
F+ C + ++ + S+ + L
Sbjct: 59 KIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 118
Query: 254 YLAFENSNCVDYITEKLYINGLSHNVLPIVMGARPEDYKKAA---PMNSYIHVDDFPSAK 310
F N + +L I +R + ++ ++ IHV + + +
Sbjct: 119 GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE 178
Query: 311 HLAEYLNKLDAND 323
L E L L
Sbjct: 179 QLLEALELLGNFK 191
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 96
Score = 24.6 bits (54), Expect = 9.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 276 SHNVLPIVMGARPEDYKKAA--------PMNSYIHVDDFPSAKHLAEYLNK 318
SH+ L I++GA+ E +K +S VDD A+ + LN
Sbjct: 7 SHSSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILND 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.437
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,534,650
Number of extensions: 72726
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 15
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)