Query psy5440
Match_columns 1036
No_of_seqs 812 out of 5474
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0731|consensus 100.0 2E-111 4E-116 1001.5 57.6 607 389-998 129-765 (774)
2 COG0465 HflB ATP-dependent Zn 100.0 5E-107 1E-111 951.4 51.6 559 417-988 19-595 (596)
3 KOG0734|consensus 100.0 1E-104 2E-109 892.1 38.6 450 539-998 297-749 (752)
4 CHL00176 ftsH cell division pr 100.0 1E-89 2.2E-94 826.1 54.9 546 421-985 50-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.3E-86 2.7E-91 806.2 60.0 554 419-988 28-600 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-81 3.8E-86 743.3 48.6 458 522-982 32-495 (495)
7 KOG0733|consensus 100.0 2.7E-56 5.9E-61 508.8 31.6 249 540-791 505-772 (802)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.9E-56 4.1E-61 559.2 27.7 315 570-911 1621-1995(2281)
9 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-56 6.4E-61 487.4 25.1 254 538-793 143-397 (406)
10 KOG0730|consensus 100.0 3.6E-53 7.9E-58 490.9 33.0 247 539-790 427-676 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 3E-43 6.4E-48 434.9 40.3 247 540-790 447-712 (733)
12 KOG0733|consensus 100.0 6E-44 1.3E-48 408.0 30.0 227 539-771 183-414 (802)
13 KOG0729|consensus 100.0 2.4E-44 5.2E-49 378.4 19.0 257 537-795 168-425 (435)
14 KOG0728|consensus 100.0 1.6E-43 3.4E-48 369.7 20.0 251 539-791 140-391 (404)
15 KOG0727|consensus 100.0 8.1E-43 1.7E-47 364.7 22.0 250 539-790 148-398 (408)
16 KOG0652|consensus 100.0 4.4E-43 9.5E-48 368.0 19.0 251 538-790 163-414 (424)
17 KOG0726|consensus 100.0 1.8E-43 3.9E-48 375.8 16.0 251 539-791 178-429 (440)
18 PF01434 Peptidase_M41: Peptid 100.0 3E-42 6.4E-47 366.6 17.1 204 777-980 1-213 (213)
19 KOG0736|consensus 100.0 1.2E-41 2.6E-46 397.3 22.4 250 538-791 664-935 (953)
20 COG1223 Predicted ATPase (AAA+ 100.0 8.7E-42 1.9E-46 358.9 19.1 239 540-787 115-354 (368)
21 KOG0738|consensus 100.0 7.4E-41 1.6E-45 367.9 21.2 244 539-789 205-470 (491)
22 PTZ00454 26S protease regulato 100.0 5E-40 1.1E-44 378.3 27.7 252 538-791 137-389 (398)
23 PRK03992 proteasome-activating 100.0 6.1E-39 1.3E-43 369.7 27.1 254 539-794 124-378 (389)
24 PTZ00361 26 proteosome regulat 100.0 1.2E-38 2.7E-43 369.3 24.5 251 539-791 176-427 (438)
25 COG0464 SpoVK ATPases of the A 100.0 5E-38 1.1E-42 372.7 25.3 246 539-787 235-482 (494)
26 KOG0735|consensus 100.0 3.5E-38 7.6E-43 365.2 21.9 227 540-771 661-888 (952)
27 KOG0739|consensus 100.0 6.7E-38 1.5E-42 334.3 14.0 227 538-771 125-353 (439)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-36 4E-41 355.7 25.5 244 540-790 222-465 (489)
29 KOG0737|consensus 100.0 5.7E-37 1.2E-41 338.1 19.3 231 534-771 80-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 3.4E-36 7.3E-41 344.3 25.4 248 539-788 115-363 (364)
31 KOG0651|consensus 100.0 2.2E-37 4.8E-42 333.0 12.8 247 539-789 125-374 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 7.3E-34 1.6E-38 333.7 25.3 255 538-794 174-484 (512)
33 KOG0730|consensus 100.0 2.6E-34 5.7E-39 334.3 18.3 279 541-836 180-469 (693)
34 KOG0732|consensus 100.0 2.5E-32 5.4E-37 333.2 19.4 251 540-794 259-531 (1080)
35 PLN00020 ribulose bisphosphate 100.0 5.6E-31 1.2E-35 293.5 25.2 260 543-820 112-395 (413)
36 TIGR01243 CDC48 AAA family ATP 100.0 5.4E-31 1.2E-35 326.1 27.6 246 540-790 172-437 (733)
37 KOG0741|consensus 100.0 9E-32 1.9E-36 304.2 15.5 249 540-789 213-491 (744)
38 KOG0740|consensus 100.0 1.3E-29 2.7E-34 288.9 17.1 244 539-789 146-405 (428)
39 KOG0731|consensus 100.0 5.7E-29 1.2E-33 297.7 17.6 199 6-206 163-375 (774)
40 COG0465 HflB ATP-dependent Zn 100.0 1.8E-28 3.9E-33 289.3 13.8 189 5-207 21-215 (596)
41 KOG0743|consensus 99.9 1.6E-21 3.5E-26 221.4 18.1 206 543-760 198-412 (457)
42 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-20 3.4E-25 208.8 21.5 215 545-771 22-257 (287)
43 PF00004 AAA: ATPase family as 99.8 8.8E-21 1.9E-25 183.7 14.6 130 582-715 1-132 (132)
44 TIGR02881 spore_V_K stage V sp 99.8 5.9E-20 1.3E-24 201.4 22.5 213 544-770 4-240 (261)
45 TIGR02880 cbbX_cfxQ probable R 99.8 4.2E-20 9.1E-25 205.2 20.2 212 547-771 23-256 (284)
46 CHL00176 ftsH cell division pr 99.8 1.4E-20 3.1E-25 228.1 16.8 188 5-199 48-242 (638)
47 KOG0742|consensus 99.8 9.3E-20 2E-24 202.2 19.0 236 542-788 351-612 (630)
48 KOG0734|consensus 99.8 9.5E-20 2.1E-24 207.5 9.1 70 134-205 295-367 (752)
49 KOG0744|consensus 99.8 9.2E-19 2E-23 190.4 15.4 240 545-788 141-414 (423)
50 KOG0735|consensus 99.8 2.5E-18 5.3E-23 201.3 17.0 281 546-838 408-704 (952)
51 COG0464 SpoVK ATPases of the A 99.8 6.1E-18 1.3E-22 201.4 20.8 263 565-835 4-276 (494)
52 KOG0736|consensus 99.8 3.2E-18 6.8E-23 202.1 17.8 230 548-788 403-653 (953)
53 PF05496 RuvB_N: Holliday junc 99.8 1.1E-17 2.3E-22 177.5 17.2 189 542-763 20-224 (233)
54 TIGR00635 ruvB Holliday juncti 99.8 2.7E-17 5.9E-22 183.6 21.0 211 544-787 2-228 (305)
55 PRK00080 ruvB Holliday junctio 99.8 4.3E-17 9.2E-22 184.6 21.7 217 542-788 21-250 (328)
56 TIGR00763 lon ATP-dependent pr 99.7 4.7E-17 1E-21 203.1 20.4 163 547-729 321-505 (775)
57 TIGR02639 ClpA ATP-dependent C 99.7 4E-17 8.6E-22 202.7 18.6 223 543-790 179-431 (731)
58 COG2255 RuvB Holliday junction 99.7 2.6E-16 5.7E-21 169.7 18.5 214 542-788 22-251 (332)
59 PRK04195 replication factor C 99.7 3.4E-15 7.3E-20 177.5 28.8 208 540-785 8-222 (482)
60 COG2256 MGS1 ATPase related to 99.7 3.6E-16 7.8E-21 175.5 17.9 207 542-790 20-240 (436)
61 KOG2004|consensus 99.7 1.2E-16 2.6E-21 187.8 14.3 164 546-731 411-598 (906)
62 PRK11034 clpA ATP-dependent Cl 99.7 3.6E-16 7.8E-21 193.0 18.6 223 544-791 184-436 (758)
63 PRK14956 DNA polymerase III su 99.6 6E-15 1.3E-19 172.5 21.0 210 540-785 12-243 (484)
64 PRK14962 DNA polymerase III su 99.6 8.3E-15 1.8E-19 173.0 21.9 204 541-786 9-240 (472)
65 TIGR03345 VI_ClpV1 type VI sec 99.6 3.8E-15 8.3E-20 186.9 20.1 218 543-786 184-429 (852)
66 TIGR02928 orc1/cdc6 family rep 99.6 9.8E-15 2.1E-19 166.8 20.7 224 543-788 12-274 (365)
67 TIGR01241 FtsH_fam ATP-depende 99.6 5.7E-16 1.2E-20 184.7 10.6 110 89-200 2-115 (495)
68 TIGR02902 spore_lonB ATP-depen 99.6 5E-15 1.1E-19 177.7 18.0 210 543-787 62-331 (531)
69 COG1222 RPT1 ATP-dependent 26S 99.6 3.2E-16 7E-21 173.5 6.7 70 135-206 143-216 (406)
70 PRK00149 dnaA chromosomal repl 99.6 1.1E-14 2.4E-19 171.8 19.9 222 540-789 116-350 (450)
71 TIGR00362 DnaA chromosomal rep 99.6 1.2E-14 2.6E-19 169.2 19.9 242 541-820 105-358 (405)
72 PRK12323 DNA polymerase III su 99.6 5.4E-15 1.2E-19 176.6 17.0 195 540-766 10-231 (700)
73 PRK13342 recombination factor 99.6 3.5E-14 7.5E-19 165.9 22.3 201 542-789 8-220 (413)
74 PRK14961 DNA polymerase III su 99.6 3.1E-14 6.8E-19 163.6 21.5 209 541-785 11-241 (363)
75 PRK00411 cdc6 cell division co 99.6 4.4E-14 9.5E-19 163.2 22.7 225 543-788 27-282 (394)
76 PRK07003 DNA polymerase III su 99.6 1.2E-14 2.7E-19 175.4 18.3 195 540-766 10-226 (830)
77 PRK06645 DNA polymerase III su 99.6 3.2E-14 6.9E-19 168.9 21.0 213 540-785 15-253 (507)
78 PRK14960 DNA polymerase III su 99.6 3E-14 6.6E-19 170.6 20.8 202 541-784 10-239 (702)
79 PRK10733 hflB ATP-dependent me 99.6 1.5E-14 3.3E-19 177.2 16.4 182 5-200 28-212 (644)
80 PRK14958 DNA polymerase III su 99.6 4.4E-14 9.4E-19 168.5 19.8 203 540-784 10-240 (509)
81 COG0466 Lon ATP-dependent Lon 99.6 3E-14 6.6E-19 169.0 17.8 165 546-730 323-509 (782)
82 PRK14088 dnaA chromosomal repl 99.6 4.2E-14 9.1E-19 166.2 19.1 224 540-789 99-333 (440)
83 PRK14949 DNA polymerase III su 99.6 7.7E-14 1.7E-18 171.4 22.0 193 541-765 11-225 (944)
84 PRK05342 clpX ATP-dependent pr 99.6 3.3E-14 7.1E-19 165.3 18.0 190 535-727 59-323 (412)
85 PRK08691 DNA polymerase III su 99.6 4.8E-14 1.1E-18 170.2 18.8 210 540-785 10-241 (709)
86 PRK14964 DNA polymerase III su 99.6 7.9E-14 1.7E-18 164.6 20.1 201 542-784 9-237 (491)
87 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.1E-13 2.3E-18 147.7 19.2 205 542-785 11-225 (226)
88 PRK07994 DNA polymerase III su 99.6 7.5E-14 1.6E-18 169.1 19.7 209 541-785 11-241 (647)
89 PRK12402 replication factor C 99.6 1.7E-13 3.8E-18 154.5 21.0 209 540-786 9-247 (337)
90 PRK10865 protein disaggregatio 99.6 4.6E-14 9.9E-19 177.7 17.9 164 543-731 175-356 (857)
91 CHL00095 clpC Clp protease ATP 99.6 7.6E-14 1.6E-18 175.6 19.8 201 543-769 176-402 (821)
92 PRK14963 DNA polymerase III su 99.6 1.6E-13 3.5E-18 163.3 21.4 203 540-785 8-237 (504)
93 PRK10787 DNA-binding ATP-depen 99.6 9.4E-14 2E-18 172.8 20.1 163 547-730 323-507 (784)
94 PRK07940 DNA polymerase III su 99.5 1.6E-13 3.5E-18 158.9 19.4 192 544-762 3-216 (394)
95 PRK05563 DNA polymerase III su 99.5 2.3E-13 5E-18 164.2 21.5 202 541-784 11-240 (559)
96 TIGR02397 dnaX_nterm DNA polym 99.5 2.3E-13 4.9E-18 155.0 20.3 205 540-786 8-240 (355)
97 PRK06893 DNA replication initi 99.5 3.3E-13 7.2E-18 145.6 20.1 211 540-785 10-227 (229)
98 PRK14951 DNA polymerase III su 99.5 2.3E-13 4.9E-18 164.6 20.6 208 541-784 11-245 (618)
99 TIGR03346 chaperone_ClpB ATP-d 99.5 1.8E-13 3.8E-18 172.8 20.5 202 543-769 170-397 (852)
100 PHA02544 44 clamp loader, smal 99.5 2.9E-13 6.4E-18 152.0 20.1 204 539-782 14-225 (316)
101 PRK08903 DnaA regulatory inact 99.5 5.2E-13 1.1E-17 143.3 20.2 203 540-786 12-224 (227)
102 PRK13341 recombination factor 99.5 2.7E-13 5.9E-18 167.0 20.2 208 542-788 24-247 (725)
103 KOG2028|consensus 99.5 1.8E-13 3.9E-18 151.1 16.2 209 542-787 134-367 (554)
104 PRK14969 DNA polymerase III su 99.5 3.3E-13 7.2E-18 161.8 19.1 209 541-785 11-241 (527)
105 PLN03025 replication factor C 99.5 4.3E-13 9.2E-18 151.6 18.7 200 540-783 7-218 (319)
106 PTZ00112 origin recognition co 99.5 5.4E-13 1.2E-17 161.6 20.5 216 546-789 755-1007(1164)
107 PRK14959 DNA polymerase III su 99.5 4.1E-13 9E-18 161.5 19.0 203 541-785 11-241 (624)
108 TIGR00382 clpX endopeptidase C 99.5 2.8E-13 6.1E-18 157.0 16.9 187 540-728 70-330 (413)
109 PRK14970 DNA polymerase III su 99.5 6.4E-13 1.4E-17 152.7 19.2 211 540-786 11-231 (367)
110 PRK07133 DNA polymerase III su 99.5 8.8E-13 1.9E-17 160.8 21.2 210 540-785 12-240 (725)
111 PRK14086 dnaA chromosomal repl 99.5 5.8E-13 1.2E-17 159.7 18.9 221 541-790 283-517 (617)
112 PRK14957 DNA polymerase III su 99.5 6.9E-13 1.5E-17 158.6 19.6 209 541-785 11-241 (546)
113 PRK14965 DNA polymerase III su 99.5 8E-13 1.7E-17 160.2 19.3 202 541-784 11-240 (576)
114 PRK05896 DNA polymerase III su 99.5 1.1E-12 2.3E-17 157.3 19.8 209 540-784 10-240 (605)
115 PRK12422 chromosomal replicati 99.5 1.3E-12 2.8E-17 153.7 20.0 228 540-790 105-345 (445)
116 PRK14952 DNA polymerase III su 99.5 9.2E-13 2E-17 158.8 19.0 209 541-784 8-240 (584)
117 PRK09111 DNA polymerase III su 99.5 1.5E-12 3.2E-17 157.7 20.8 210 540-785 18-254 (598)
118 TIGR00390 hslU ATP-dependent p 99.5 9.4E-13 2E-17 151.3 18.0 175 547-725 13-342 (441)
119 PRK07764 DNA polymerase III su 99.5 9.4E-13 2E-17 164.1 19.5 209 540-783 9-241 (824)
120 PRK06647 DNA polymerase III su 99.5 1.7E-12 3.6E-17 156.6 20.9 209 541-785 11-241 (563)
121 PRK14953 DNA polymerase III su 99.5 1.9E-12 4.2E-17 153.7 21.1 209 541-785 11-241 (486)
122 PRK05201 hslU ATP-dependent pr 99.5 8.4E-13 1.8E-17 151.7 17.3 175 548-726 17-345 (443)
123 PRK08451 DNA polymerase III su 99.5 1.9E-12 4.1E-17 154.2 20.4 202 541-784 9-238 (535)
124 TIGR02640 gas_vesic_GvpN gas v 99.5 2.7E-12 5.8E-17 141.3 20.1 190 579-791 21-260 (262)
125 PRK06305 DNA polymerase III su 99.5 2.2E-12 4.9E-17 152.1 20.2 210 540-785 11-243 (451)
126 PRK08084 DNA replication initi 99.4 5.9E-12 1.3E-16 136.5 21.0 207 540-785 16-233 (235)
127 PRK14955 DNA polymerase III su 99.4 1.8E-12 3.8E-17 150.9 17.8 214 540-785 10-254 (397)
128 PF05673 DUF815: Protein of un 99.4 4.7E-12 1E-16 136.3 18.9 194 540-763 21-244 (249)
129 PRK11034 clpA ATP-dependent Cl 99.4 2.5E-12 5.4E-17 159.3 19.3 164 547-730 459-667 (758)
130 PRK14087 dnaA chromosomal repl 99.4 2.7E-12 5.7E-17 151.4 18.5 192 579-788 141-348 (450)
131 TIGR02639 ClpA ATP-dependent C 99.4 1.6E-12 3.5E-17 161.8 17.6 197 547-764 455-707 (731)
132 PRK08727 hypothetical protein; 99.4 7E-12 1.5E-16 135.8 19.9 210 540-787 13-230 (233)
133 COG1224 TIP49 DNA helicase TIP 99.4 4.7E-12 1E-16 140.3 18.4 100 685-788 321-432 (450)
134 PRK14948 DNA polymerase III su 99.4 6.8E-12 1.5E-16 152.8 21.5 206 541-783 11-240 (620)
135 PRK00440 rfc replication facto 99.4 1E-11 2.2E-16 139.0 20.5 204 539-786 10-224 (319)
136 PRK13407 bchI magnesium chelat 99.4 4.4E-12 9.6E-17 143.9 17.4 221 542-791 4-309 (334)
137 PRK05642 DNA replication initi 99.4 1E-11 2.2E-16 134.7 19.1 212 540-785 13-232 (234)
138 PRK14954 DNA polymerase III su 99.4 1E-11 2.3E-16 150.7 20.7 213 541-785 11-254 (620)
139 PRK14950 DNA polymerase III su 99.4 1.3E-11 2.8E-16 150.2 21.3 209 540-784 10-241 (585)
140 TIGR02903 spore_lon_C ATP-depe 99.4 1.1E-11 2.5E-16 151.2 20.3 217 542-787 150-429 (615)
141 COG1474 CDC6 Cdc6-related prot 99.4 2.6E-11 5.6E-16 139.4 21.8 216 548-787 19-264 (366)
142 KOG0989|consensus 99.4 7E-12 1.5E-16 137.1 16.1 190 539-764 29-234 (346)
143 TIGR01650 PD_CobS cobaltochela 99.4 4.9E-12 1.1E-16 142.1 15.1 139 579-731 64-235 (327)
144 COG2812 DnaX DNA polymerase II 99.4 5.6E-12 1.2E-16 148.8 16.1 195 541-767 11-227 (515)
145 COG3829 RocR Transcriptional r 99.4 1.1E-12 2.4E-17 152.8 9.4 216 540-790 239-477 (560)
146 CHL00081 chlI Mg-protoporyphyr 99.3 1.7E-11 3.7E-16 139.6 17.2 222 541-791 12-325 (350)
147 PRK06620 hypothetical protein; 99.3 3E-11 6.5E-16 129.4 17.9 195 540-785 10-213 (214)
148 PF00308 Bac_DnaA: Bacterial d 99.3 1.6E-11 3.5E-16 131.8 16.0 198 541-766 3-214 (219)
149 COG1223 Predicted ATPase (AAA+ 99.3 9.5E-13 2.1E-17 140.5 4.8 68 136-208 114-184 (368)
150 TIGR02030 BchI-ChlI magnesium 99.3 4.6E-11 1E-15 135.9 17.8 220 544-791 2-312 (337)
151 KOG0727|consensus 99.3 2.3E-12 4.9E-17 136.8 6.2 71 135-207 147-221 (408)
152 PRK14971 DNA polymerase III su 99.3 9.9E-11 2.1E-15 142.7 20.9 207 542-784 13-242 (614)
153 KOG0729|consensus 99.3 4E-12 8.6E-17 135.8 6.7 70 134-205 168-241 (435)
154 TIGR03345 VI_ClpV1 type VI sec 99.3 6.6E-11 1.4E-15 149.1 18.5 163 546-731 566-782 (852)
155 COG0542 clpA ATP-binding subun 99.3 3.9E-11 8.5E-16 146.5 15.3 160 546-732 491-708 (786)
156 TIGR02442 Cob-chelat-sub cobal 99.3 6.7E-11 1.4E-15 145.2 17.4 218 544-791 2-307 (633)
157 cd00009 AAA The AAA+ (ATPases 99.3 6E-11 1.3E-15 114.7 13.3 123 579-714 19-150 (151)
158 COG0593 DnaA ATPase involved i 99.3 1.8E-10 4E-15 132.7 18.9 227 540-792 81-317 (408)
159 PF05621 TniB: Bacterial TniB 99.2 2.2E-10 4.7E-15 127.0 18.3 218 547-783 35-284 (302)
160 KOG0726|consensus 99.2 4.9E-12 1.1E-16 136.7 4.7 64 135-198 177-244 (440)
161 CHL00095 clpC Clp protease ATP 99.2 1.6E-10 3.4E-15 145.9 17.4 164 546-731 509-734 (821)
162 KOG0738|consensus 99.2 1.1E-11 2.3E-16 138.7 5.9 68 135-206 204-276 (491)
163 KOG0739|consensus 99.2 8.4E-12 1.8E-16 135.3 4.9 70 135-208 125-199 (439)
164 TIGR03346 chaperone_ClpB ATP-d 99.2 3.7E-10 8.1E-15 143.0 19.8 162 546-730 565-777 (852)
165 PRK10865 protein disaggregatio 99.2 4.3E-10 9.4E-15 142.1 19.4 164 544-731 566-781 (857)
166 COG0542 clpA ATP-binding subun 99.2 5.5E-10 1.2E-14 136.6 19.0 205 542-771 166-396 (786)
167 PF06068 TIP49: TIP49 C-termin 99.2 2.1E-10 4.5E-15 129.5 14.1 67 544-617 22-90 (398)
168 PRK09112 DNA polymerase III su 99.2 7.1E-10 1.5E-14 127.1 18.3 188 541-762 18-242 (351)
169 KOG1942|consensus 99.2 8.5E-10 1.8E-14 119.6 17.2 105 681-789 322-439 (456)
170 PRK15424 propionate catabolism 99.2 1.1E-10 2.5E-15 139.8 11.5 203 543-790 216-463 (538)
171 COG2204 AtoC Response regulato 99.1 5.5E-11 1.2E-15 138.8 8.2 214 542-794 137-376 (464)
172 KOG0652|consensus 99.1 3.5E-11 7.5E-16 128.4 5.3 71 128-198 155-230 (424)
173 COG0714 MoxR-like ATPases [Gen 99.1 1.1E-09 2.3E-14 124.6 17.7 135 579-729 43-202 (329)
174 COG2607 Predicted ATPase (AAA+ 99.1 2.3E-09 5.1E-14 114.2 18.8 195 539-763 53-276 (287)
175 COG3604 FhlA Transcriptional r 99.1 1.2E-10 2.6E-15 134.5 9.8 215 540-790 217-454 (550)
176 PRK07471 DNA polymerase III su 99.1 1.7E-09 3.7E-14 124.5 19.3 177 541-752 14-231 (365)
177 PHA02244 ATPase-like protein 99.1 1.8E-09 3.9E-14 122.9 19.2 123 579-718 119-263 (383)
178 smart00350 MCM minichromosome 99.1 6.5E-10 1.4E-14 133.4 16.4 221 547-788 204-504 (509)
179 TIGR03015 pepcterm_ATPase puta 99.1 1.5E-09 3.2E-14 119.0 17.5 190 581-788 45-266 (269)
180 PRK09087 hypothetical protein; 99.1 4.3E-10 9.3E-15 121.5 12.8 172 581-788 46-222 (226)
181 PRK13531 regulatory ATPase Rav 99.1 1.1E-09 2.3E-14 128.6 17.0 214 548-792 22-287 (498)
182 PRK05564 DNA polymerase III su 99.1 1.4E-09 3E-14 122.8 17.2 175 543-752 1-183 (313)
183 TIGR00368 Mg chelatase-related 99.1 1.2E-09 2.7E-14 130.1 17.5 211 542-786 188-497 (499)
184 TIGR00764 lon_rel lon-related 99.1 7E-10 1.5E-14 135.4 15.8 104 683-788 267-391 (608)
185 TIGR02329 propionate_PrpR prop 99.1 6.5E-10 1.4E-14 133.3 15.2 205 542-790 208-448 (526)
186 smart00382 AAA ATPases associa 99.1 8.3E-10 1.8E-14 105.4 12.4 126 579-716 2-147 (148)
187 KOG1969|consensus 99.1 2.7E-09 6E-14 127.2 19.1 211 534-771 259-518 (877)
188 TIGR00678 holB DNA polymerase 99.1 1.9E-09 4.1E-14 112.6 15.7 144 577-751 12-183 (188)
189 PRK11331 5-methylcytosine-spec 99.1 1.1E-09 2.4E-14 127.5 14.9 154 545-715 174-357 (459)
190 KOG0737|consensus 99.1 7.8E-11 1.7E-15 131.9 4.5 69 132-200 81-154 (386)
191 COG1219 ClpX ATP-dependent pro 99.1 4.2E-10 9E-15 123.6 9.9 127 548-679 63-203 (408)
192 TIGR02974 phageshock_pspF psp 99.1 2.2E-10 4.9E-15 130.2 7.6 196 548-791 1-232 (329)
193 PF07728 AAA_5: AAA domain (dy 99.1 2.9E-10 6.3E-15 112.5 7.4 110 581-707 1-139 (139)
194 TIGR02031 BchD-ChlD magnesium 99.0 3.7E-09 7.9E-14 128.8 17.8 193 580-790 17-260 (589)
195 COG1220 HslU ATP-dependent pro 99.0 1.4E-09 3.1E-14 120.2 12.7 83 640-726 252-346 (444)
196 PTZ00454 26S protease regulato 99.0 2.5E-10 5.4E-15 132.8 7.2 66 135-200 137-206 (398)
197 PRK11608 pspF phage shock prot 99.0 2.7E-10 5.9E-15 129.4 6.9 199 544-790 4-238 (326)
198 PRK05022 anaerobic nitric oxid 99.0 3.1E-10 6.8E-15 136.2 7.7 199 544-790 185-418 (509)
199 COG1221 PspF Transcriptional r 99.0 2.9E-09 6.2E-14 122.7 14.7 199 541-768 73-309 (403)
200 TIGR01817 nifA Nif-specific re 99.0 1.1E-09 2.3E-14 132.4 10.9 98 541-651 191-303 (534)
201 PF00158 Sigma54_activat: Sigm 99.0 2.2E-09 4.8E-14 110.9 11.7 132 548-709 1-156 (168)
202 PRK11388 DNA-binding transcrip 99.0 8.8E-10 1.9E-14 135.8 10.3 151 542-722 321-499 (638)
203 PF01078 Mg_chelatase: Magnesi 99.0 4.7E-10 1E-14 118.7 6.6 46 544-603 1-46 (206)
204 PF07724 AAA_2: AAA domain (Cd 99.0 1.2E-09 2.7E-14 113.1 9.6 111 580-695 4-131 (171)
205 PRK15429 formate hydrogenlyase 99.0 8.6E-09 1.9E-13 128.1 18.6 201 542-790 372-607 (686)
206 COG0470 HolB ATPase involved i 99.0 1E-08 2.2E-13 115.0 17.2 150 546-726 1-178 (325)
207 PRK07399 DNA polymerase III su 99.0 9E-09 1.9E-13 116.4 16.3 182 544-761 2-222 (314)
208 TIGR00602 rad24 checkpoint pro 99.0 8.3E-09 1.8E-13 125.7 16.9 203 539-767 77-327 (637)
209 PRK10820 DNA-binding transcrip 99.0 7.9E-09 1.7E-13 124.5 16.2 205 541-790 199-435 (520)
210 smart00763 AAA_PrkA PrkA AAA d 98.9 1.1E-08 2.3E-13 116.7 15.4 84 544-634 48-144 (361)
211 KOG0741|consensus 98.9 1.5E-08 3.3E-13 117.2 16.4 161 555-727 520-684 (744)
212 PRK04132 replication factor C 98.9 1.4E-08 3.1E-13 126.6 17.6 171 582-784 567-750 (846)
213 PRK09862 putative ATP-dependen 98.9 1.9E-08 4.2E-13 119.7 17.8 212 543-787 188-491 (506)
214 KOG0728|consensus 98.9 1.1E-09 2.3E-14 116.7 5.7 68 137-206 141-212 (404)
215 PRK03992 proteasome-activating 98.9 1.3E-09 2.9E-14 126.6 7.1 66 135-200 123-192 (389)
216 PRK08058 DNA polymerase III su 98.9 1.5E-08 3.4E-13 115.3 15.1 154 544-727 3-180 (329)
217 PTZ00361 26 proteosome regulat 98.9 1.5E-09 3.2E-14 127.4 6.1 65 135-199 175-243 (438)
218 COG1239 ChlI Mg-chelatase subu 98.9 5.8E-08 1.2E-12 111.3 18.6 231 542-821 13-306 (423)
219 PRK05707 DNA polymerase III su 98.9 2E-08 4.4E-13 114.2 14.9 135 576-729 19-178 (328)
220 KOG0732|consensus 98.9 1.1E-09 2.3E-14 136.4 4.7 90 137-226 259-356 (1080)
221 PTZ00111 DNA replication licen 98.9 2.7E-08 5.8E-13 123.7 16.6 157 548-725 452-653 (915)
222 KOG2680|consensus 98.8 7.4E-08 1.6E-12 105.2 16.4 93 694-790 339-431 (454)
223 TIGR03689 pup_AAA proteasome A 98.8 3E-09 6.5E-14 126.6 5.8 68 133-200 172-243 (512)
224 PRK08116 hypothetical protein; 98.8 4.2E-08 9.1E-13 108.7 13.2 130 579-727 114-258 (268)
225 TIGR01242 26Sp45 26S proteasom 98.8 5.8E-09 1.3E-13 120.2 6.3 66 135-200 114-183 (364)
226 COG0606 Predicted ATPase with 98.8 2.3E-08 4.9E-13 116.0 10.4 145 542-718 175-381 (490)
227 PF13177 DNA_pol3_delta2: DNA 98.8 6.8E-08 1.5E-12 99.2 12.4 133 550-715 1-160 (162)
228 KOG0745|consensus 98.7 2.9E-08 6.3E-13 112.8 9.9 99 581-679 228-332 (564)
229 KOG1514|consensus 98.7 3.6E-07 7.7E-12 109.5 18.4 221 548-791 398-658 (767)
230 KOG0651|consensus 98.7 1.1E-08 2.4E-13 112.3 4.9 63 138-200 127-193 (388)
231 PRK06964 DNA polymerase III su 98.7 9.8E-08 2.1E-12 109.0 12.8 134 576-728 18-203 (342)
232 KOG0991|consensus 98.7 1E-07 2.2E-12 101.2 11.1 199 539-781 20-230 (333)
233 PRK13765 ATP-dependent proteas 98.7 2.6E-07 5.7E-12 113.1 15.9 102 684-787 277-399 (637)
234 PF07726 AAA_3: ATPase family 98.7 1.5E-08 3.2E-13 99.7 3.9 111 581-707 1-129 (131)
235 PRK07952 DNA replication prote 98.6 1.6E-07 3.4E-12 102.7 11.9 132 541-694 67-205 (244)
236 PF14532 Sigma54_activ_2: Sigm 98.6 8E-08 1.7E-12 95.7 8.2 125 549-714 1-136 (138)
237 PRK06871 DNA polymerase III su 98.6 8.5E-07 1.9E-11 100.7 16.5 135 576-729 21-179 (325)
238 PRK08769 DNA polymerase III su 98.6 6.5E-07 1.4E-11 101.5 15.3 154 576-755 23-204 (319)
239 PRK12377 putative replication 98.6 2.2E-07 4.8E-12 101.9 11.1 101 579-694 101-206 (248)
240 KOG2227|consensus 98.6 1.6E-06 3.6E-11 100.1 18.1 202 548-771 152-382 (529)
241 PRK11361 acetoacetate metaboli 98.6 9E-07 2E-11 104.6 16.7 199 544-790 141-374 (457)
242 PRK10923 glnG nitrogen regulat 98.6 1.5E-07 3.2E-12 111.7 10.2 150 543-722 135-315 (469)
243 TIGR02915 PEP_resp_reg putativ 98.6 2.8E-07 6.2E-12 108.6 12.4 199 544-790 137-370 (445)
244 TIGR01818 ntrC nitrogen regula 98.6 9.3E-07 2E-11 104.7 16.2 94 545-651 133-241 (463)
245 PRK07993 DNA polymerase III su 98.5 7.7E-07 1.7E-11 101.7 14.1 152 576-752 21-197 (334)
246 KOG0740|consensus 98.5 5.9E-08 1.3E-12 112.3 4.8 64 136-200 146-213 (428)
247 KOG0990|consensus 98.5 1.3E-06 2.8E-11 96.9 13.6 188 538-763 33-232 (360)
248 PRK08181 transposase; Validate 98.5 8.7E-07 1.9E-11 98.3 12.2 100 579-694 106-209 (269)
249 CHL00195 ycf46 Ycf46; Provisio 98.5 1.8E-07 4E-12 111.4 6.9 62 137-200 222-286 (489)
250 KOG1051|consensus 98.4 1.2E-06 2.5E-11 109.3 12.9 129 547-695 563-712 (898)
251 PRK06090 DNA polymerase III su 98.4 2.7E-06 5.8E-11 96.5 14.1 133 576-727 22-178 (319)
252 PRK15115 response regulator Gl 98.4 7.7E-07 1.7E-11 104.9 10.0 146 547-722 135-311 (444)
253 PRK13406 bchD magnesium chelat 98.4 2.6E-06 5.7E-11 103.6 14.7 191 580-791 26-253 (584)
254 PRK08939 primosomal protein Dn 98.4 1.1E-06 2.5E-11 99.1 10.5 101 578-694 155-261 (306)
255 COG3283 TyrR Transcriptional r 98.4 2.5E-06 5.5E-11 95.5 12.6 209 540-793 198-433 (511)
256 PRK06526 transposase; Provisio 98.4 7.3E-07 1.6E-11 98.2 7.7 101 579-695 98-202 (254)
257 PF01637 Arch_ATPase: Archaeal 98.4 1.9E-06 4E-11 91.2 10.4 163 579-753 20-228 (234)
258 PF12775 AAA_7: P-loop contain 98.4 2.9E-06 6.3E-11 94.4 12.3 163 543-730 7-194 (272)
259 PRK08699 DNA polymerase III su 98.3 3.9E-06 8.4E-11 95.6 13.4 132 576-727 18-183 (325)
260 PRK06835 DNA replication prote 98.3 2E-06 4.3E-11 98.0 11.0 69 580-650 184-258 (329)
261 PRK10365 transcriptional regul 98.3 4.2E-06 9.2E-11 98.4 13.2 146 547-722 140-316 (441)
262 COG3284 AcoR Transcriptional a 98.3 9.5E-07 2.1E-11 105.5 7.6 203 549-790 316-538 (606)
263 PF13173 AAA_14: AAA domain 98.3 3.4E-06 7.3E-11 83.0 10.1 120 580-720 3-126 (128)
264 PF03215 Rad17: Rad17 cell cyc 98.3 1.6E-05 3.4E-10 95.8 17.5 207 539-769 12-269 (519)
265 PRK09183 transposase/IS protei 98.2 2.6E-06 5.5E-11 94.2 8.2 101 579-694 102-206 (259)
266 COG1484 DnaC DNA replication p 98.2 6.5E-06 1.4E-10 90.8 11.2 71 578-650 104-179 (254)
267 PF01695 IstB_IS21: IstB-like 98.2 1.7E-06 3.6E-11 90.4 5.7 70 578-649 46-119 (178)
268 COG1241 MCM2 Predicted ATPase 98.2 8.7E-06 1.9E-10 99.6 12.5 155 548-724 288-478 (682)
269 PRK06921 hypothetical protein; 98.2 4.8E-06 1E-10 92.4 9.4 68 579-649 117-188 (266)
270 PF13401 AAA_22: AAA domain; P 98.2 5.8E-06 1.2E-10 80.4 8.7 98 579-691 4-125 (131)
271 PF00493 MCM: MCM2/3/5 family 98.2 1.5E-06 3.2E-11 99.3 5.0 188 579-788 57-326 (331)
272 KOG2035|consensus 98.2 2.2E-05 4.9E-10 85.7 13.6 178 542-751 9-220 (351)
273 COG3267 ExeA Type II secretory 98.1 4.8E-05 1E-09 82.8 14.4 185 582-782 54-267 (269)
274 KOG0478|consensus 98.1 4.4E-05 9.6E-10 91.6 15.5 125 579-719 462-616 (804)
275 cd01120 RecA-like_NTPases RecA 98.1 1.6E-05 3.6E-10 79.0 10.3 110 582-695 2-138 (165)
276 PLN03210 Resistant to P. syrin 98.1 6.1E-05 1.3E-09 99.2 18.0 179 542-753 180-389 (1153)
277 PF05729 NACHT: NACHT domain 98.1 5.3E-05 1.2E-09 76.0 12.9 140 581-731 2-165 (166)
278 KOG1970|consensus 98.0 0.00018 3.9E-09 85.0 16.9 174 580-768 111-320 (634)
279 PF00931 NB-ARC: NB-ARC domain 98.0 0.00012 2.6E-09 80.9 14.7 169 556-753 3-196 (287)
280 PF12774 AAA_6: Hydrolytic ATP 98.0 7.7E-05 1.7E-09 81.2 12.7 126 579-725 32-176 (231)
281 TIGR02688 conserved hypothetic 97.9 8.1E-05 1.8E-09 86.7 13.0 60 579-650 209-272 (449)
282 TIGR02237 recomb_radB DNA repa 97.9 3.6E-05 7.8E-10 81.6 8.9 115 576-693 9-149 (209)
283 KOG0480|consensus 97.9 8.9E-05 1.9E-09 88.5 12.8 165 545-730 344-543 (764)
284 PF06480 FtsH_ext: FtsH Extrac 97.9 4.5E-05 9.7E-10 71.8 8.6 91 398-491 1-106 (110)
285 PRK05917 DNA polymerase III su 97.8 9.3E-05 2E-09 82.9 10.8 122 576-716 16-154 (290)
286 CHL00181 cbbX CbbX; Provisiona 97.8 1.6E-05 3.5E-10 89.1 4.8 58 141-198 21-84 (287)
287 PF03969 AFG1_ATPase: AFG1-lik 97.8 5.9E-05 1.3E-09 87.2 8.8 102 576-694 59-168 (362)
288 KOG0482|consensus 97.8 5.8E-05 1.3E-09 87.8 8.4 236 530-788 334-638 (721)
289 PRK07132 DNA polymerase III su 97.8 0.001 2.3E-08 75.1 18.2 127 577-727 16-160 (299)
290 TIGR02880 cbbX_cfxQ probable R 97.7 2.9E-05 6.3E-10 86.9 5.1 57 143-199 22-84 (284)
291 cd01124 KaiC KaiC is a circadi 97.7 0.00028 6.1E-09 72.9 11.5 103 582-695 2-141 (187)
292 PRK07276 DNA polymerase III su 97.7 0.00076 1.6E-08 75.8 15.6 129 576-726 21-172 (290)
293 PRK05818 DNA polymerase III su 97.6 0.00032 6.9E-09 77.3 11.3 121 577-716 5-147 (261)
294 PRK11823 DNA repair protein Ra 97.6 0.00026 5.6E-09 84.2 11.2 78 575-652 76-170 (446)
295 PHA00729 NTP-binding motif con 97.6 0.00018 3.8E-09 77.9 8.7 24 581-604 19-42 (226)
296 TIGR01618 phage_P_loop phage n 97.6 0.00018 3.9E-09 77.7 8.1 74 577-652 10-95 (220)
297 TIGR02012 tigrfam_recA protein 97.6 0.00034 7.4E-09 79.6 10.4 117 576-692 52-190 (321)
298 cd01121 Sms Sms (bacterial rad 97.5 0.00035 7.5E-09 81.2 10.5 77 576-652 79-172 (372)
299 KOG0477|consensus 97.5 0.00035 7.6E-09 83.2 10.4 168 548-730 451-651 (854)
300 PRK09361 radB DNA repair and r 97.5 0.00033 7.2E-09 75.3 9.4 116 575-692 19-160 (225)
301 COG5271 MDN1 AAA ATPase contai 97.5 0.00035 7.5E-09 89.5 10.5 141 578-733 1542-1707(4600)
302 TIGR02881 spore_V_K stage V sp 97.5 0.0001 2.2E-09 81.4 5.0 58 141-198 4-67 (261)
303 COG1618 Predicted nucleotide k 97.5 0.00049 1.1E-08 70.4 9.3 26 578-603 4-29 (179)
304 PF05707 Zot: Zonular occluden 97.5 0.00028 6.2E-09 74.5 7.7 123 582-716 3-146 (193)
305 TIGR02858 spore_III_AA stage I 97.5 0.00039 8.4E-09 77.5 9.1 113 580-714 112-256 (270)
306 PF00910 RNA_helicase: RNA hel 97.5 0.00033 7.1E-09 67.0 7.4 23 582-604 1-23 (107)
307 CHL00206 ycf2 Ycf2; Provisiona 97.4 8.7E-05 1.9E-09 97.7 4.0 42 937-978 2236-2277(2281)
308 PRK15455 PrkA family serine pr 97.4 0.00021 4.5E-09 86.0 6.8 64 543-612 73-137 (644)
309 cd00983 recA RecA is a bacter 97.4 0.00073 1.6E-08 77.0 10.8 117 576-692 52-190 (325)
310 PRK14722 flhF flagellar biosyn 97.4 0.00067 1.5E-08 78.7 10.6 110 578-702 136-267 (374)
311 KOG2170|consensus 97.4 0.0011 2.5E-08 73.6 11.8 220 547-792 83-323 (344)
312 cd01394 radB RadB. The archaea 97.4 0.00057 1.2E-08 73.0 9.1 140 576-717 16-188 (218)
313 KOG1968|consensus 97.4 0.0002 4.4E-09 90.3 6.2 204 541-767 315-535 (871)
314 KOG1051|consensus 97.4 0.00089 1.9E-08 84.3 11.6 160 545-729 185-363 (898)
315 PRK08533 flagellar accessory p 97.3 0.001 2.2E-08 72.4 10.1 76 576-651 21-130 (230)
316 PRK08118 topology modulation p 97.3 0.00047 1E-08 71.4 6.9 53 581-633 3-55 (167)
317 PRK00131 aroK shikimate kinase 97.3 0.00065 1.4E-08 69.2 8.0 42 578-621 3-44 (175)
318 PRK06067 flagellar accessory p 97.3 0.001 2.2E-08 72.1 9.6 39 575-613 21-62 (234)
319 PRK09376 rho transcription ter 97.3 0.0012 2.7E-08 76.5 10.6 72 582-653 172-271 (416)
320 PLN00020 ribulose bisphosphate 97.3 0.00029 6.4E-09 80.8 5.2 56 139-200 111-175 (413)
321 TIGR02782 TrbB_P P-type conjug 97.3 0.0022 4.8E-08 72.6 12.1 70 579-648 132-214 (299)
322 PF13207 AAA_17: AAA domain; P 97.2 0.0002 4.4E-09 68.8 3.2 30 582-611 2-31 (121)
323 PRK14532 adenylate kinase; Pro 97.2 0.0033 7.1E-08 65.7 12.4 36 581-618 2-37 (188)
324 cd03283 ABC_MutS-like MutS-lik 97.2 0.0016 3.4E-08 69.4 10.1 104 580-697 26-151 (199)
325 COG1373 Predicted ATPase (AAA+ 97.2 0.0025 5.4E-08 74.9 12.3 124 581-724 39-162 (398)
326 PF00437 T2SE: Type II/IV secr 97.2 0.001 2.3E-08 73.5 8.6 100 539-648 97-207 (270)
327 COG1116 TauB ABC-type nitrate/ 97.2 0.00059 1.3E-08 74.4 6.0 29 575-603 23-53 (248)
328 PF14516 AAA_35: AAA-like doma 97.2 0.019 4.1E-07 65.9 18.6 161 580-753 32-233 (331)
329 PRK13949 shikimate kinase; Pro 97.2 0.0028 6.1E-08 65.7 10.8 32 580-611 2-33 (169)
330 PF07693 KAP_NTPase: KAP famil 97.1 0.013 2.8E-07 66.2 17.0 79 637-730 171-264 (325)
331 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0038 8.1E-08 64.7 11.7 34 582-617 2-35 (183)
332 COG1485 Predicted ATPase [Gene 97.1 0.0024 5.3E-08 72.6 10.8 156 550-733 29-200 (367)
333 TIGR00416 sms DNA repair prote 97.1 0.0023 5E-08 76.4 11.2 78 575-652 90-184 (454)
334 PRK07261 topology modulation p 97.1 0.00086 1.9E-08 69.6 6.6 34 582-615 3-36 (171)
335 KOG2228|consensus 97.1 0.0043 9.3E-08 70.1 12.3 160 548-730 26-220 (408)
336 PRK12723 flagellar biosynthesi 97.1 0.0031 6.6E-08 73.8 11.5 130 578-722 173-328 (388)
337 cd01393 recA_like RecA is a b 97.1 0.0014 3.1E-08 70.2 8.2 117 575-692 15-167 (226)
338 PRK09354 recA recombinase A; P 97.1 0.0021 4.5E-08 74.0 9.7 116 576-691 57-194 (349)
339 PRK13833 conjugal transfer pro 97.1 0.0071 1.5E-07 69.1 13.7 69 579-647 144-224 (323)
340 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0018 4E-08 69.7 8.6 117 575-692 15-168 (235)
341 KOG0481|consensus 97.0 0.0059 1.3E-07 71.8 12.8 233 548-793 333-619 (729)
342 PRK04296 thymidine kinase; Pro 97.0 0.0035 7.6E-08 66.2 10.2 70 581-650 4-90 (190)
343 KOG0743|consensus 97.0 0.00078 1.7E-08 78.5 5.7 77 128-205 187-267 (457)
344 TIGR00635 ruvB Holliday juncti 97.0 0.00087 1.9E-08 75.3 5.7 55 141-202 2-59 (305)
345 PRK00771 signal recognition pa 97.0 0.013 2.8E-07 69.6 15.7 38 577-614 93-133 (437)
346 PF13671 AAA_33: AAA domain; P 97.0 0.0018 3.8E-08 64.0 7.3 36 582-619 2-37 (143)
347 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00075 1.6E-08 77.6 5.1 52 141-199 48-104 (361)
348 cd01128 rho_factor Transcripti 97.0 0.0061 1.3E-07 67.3 11.7 112 581-692 18-165 (249)
349 PRK13900 type IV secretion sys 96.9 0.011 2.3E-07 68.1 13.9 71 578-648 159-245 (332)
350 cd01131 PilT Pilus retraction 96.9 0.0032 6.9E-08 66.8 8.9 66 582-647 4-83 (198)
351 PF05496 RuvB_N: Holliday junc 96.9 0.0014 3.1E-08 70.7 6.2 55 140-201 21-78 (233)
352 TIGR02788 VirB11 P-type DNA tr 96.9 0.0081 1.8E-07 68.2 12.5 73 576-648 141-228 (308)
353 PRK12339 2-phosphoglycerate ki 96.9 0.017 3.7E-07 61.6 14.0 35 579-615 3-37 (197)
354 COG4619 ABC-type uncharacteriz 96.9 0.0065 1.4E-07 62.8 9.9 60 637-715 150-209 (223)
355 PRK06762 hypothetical protein; 96.9 0.0032 6.9E-08 64.3 7.9 39 579-617 2-40 (166)
356 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0083 1.8E-07 64.6 11.4 113 579-701 29-161 (213)
357 cd00046 DEXDc DEAD-like helica 96.8 0.0053 1.2E-07 58.4 8.9 24 580-603 1-24 (144)
358 KOG2543|consensus 96.8 0.016 3.5E-07 66.6 13.9 161 547-730 7-194 (438)
359 PRK14528 adenylate kinase; Pro 96.8 0.015 3.2E-07 61.2 12.8 30 581-610 3-32 (186)
360 PRK10536 hypothetical protein; 96.8 0.0052 1.1E-07 67.9 9.4 46 543-602 52-97 (262)
361 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0084 1.8E-07 65.4 11.0 40 575-614 17-59 (237)
362 PF13191 AAA_16: AAA ATPase do 96.8 0.00084 1.8E-08 68.9 3.1 59 548-615 2-63 (185)
363 cd01122 GP4d_helicase GP4d_hel 96.8 0.0062 1.3E-07 67.2 10.1 38 575-612 26-67 (271)
364 PRK13894 conjugal transfer ATP 96.8 0.012 2.6E-07 67.3 12.5 70 579-648 148-229 (319)
365 PRK13851 type IV secretion sys 96.8 0.0066 1.4E-07 70.0 10.4 73 576-648 159-246 (344)
366 cd01130 VirB11-like_ATPase Typ 96.8 0.0026 5.6E-08 66.7 6.6 69 579-647 25-109 (186)
367 PRK14974 cell division protein 96.8 0.0097 2.1E-07 68.4 11.7 36 578-613 139-177 (336)
368 PRK13948 shikimate kinase; Pro 96.7 0.004 8.6E-08 65.6 7.8 43 577-621 8-50 (182)
369 PF06309 Torsin: Torsin; Inte 96.7 0.0021 4.5E-08 63.6 5.3 51 547-603 26-77 (127)
370 PRK07940 DNA polymerase III su 96.7 0.0015 3.3E-08 76.5 5.1 55 141-197 3-60 (394)
371 cd00984 DnaB_C DnaB helicase C 96.7 0.0072 1.6E-07 65.4 9.9 38 575-612 9-50 (242)
372 PF06745 KaiC: KaiC; InterPro 96.7 0.0066 1.4E-07 65.3 9.5 108 575-692 15-159 (226)
373 PRK14527 adenylate kinase; Pro 96.7 0.016 3.4E-07 61.0 12.0 34 577-610 4-37 (191)
374 PF03266 NTPase_1: NTPase; In 96.7 0.0046 1E-07 64.2 7.9 27 581-607 1-30 (168)
375 PF13604 AAA_30: AAA domain; P 96.7 0.0036 7.8E-08 66.4 7.2 97 580-692 19-131 (196)
376 PHA02624 large T antigen; Prov 96.7 0.00086 1.9E-08 81.1 2.8 122 575-714 427-560 (647)
377 cd00464 SK Shikimate kinase (S 96.7 0.0026 5.7E-08 63.6 5.9 39 581-621 1-39 (154)
378 PF06480 FtsH_ext: FtsH Extrac 96.7 0.0064 1.4E-07 57.1 8.2 73 4-77 25-106 (110)
379 PRK13947 shikimate kinase; Pro 96.7 0.0015 3.2E-08 67.0 4.1 31 581-611 3-33 (171)
380 PF10236 DAP3: Mitochondrial r 96.7 0.08 1.7E-06 60.3 18.4 120 638-758 156-307 (309)
381 PRK05973 replicative DNA helic 96.7 0.006 1.3E-07 66.8 9.0 38 576-613 61-101 (237)
382 cd03216 ABC_Carb_Monos_I This 96.7 0.0047 1E-07 63.4 7.7 104 578-695 25-143 (163)
383 COG0563 Adk Adenylate kinase a 96.7 0.0077 1.7E-07 63.2 9.3 34 581-616 2-35 (178)
384 PRK03839 putative kinase; Prov 96.7 0.0014 3.1E-08 67.9 3.7 30 582-611 3-32 (180)
385 PRK00080 ruvB Holliday junctio 96.7 0.0024 5.1E-08 73.0 5.8 55 140-201 22-79 (328)
386 PRK04301 radA DNA repair and r 96.6 0.008 1.7E-07 68.5 10.0 117 575-692 98-251 (317)
387 COG5271 MDN1 AAA ATPase contai 96.6 0.0074 1.6E-07 78.2 10.2 135 581-730 890-1048(4600)
388 TIGR01420 pilT_fam pilus retra 96.6 0.0048 1E-07 71.1 8.3 68 580-647 123-204 (343)
389 PRK00625 shikimate kinase; Pro 96.6 0.0017 3.6E-08 67.8 4.0 31 581-611 2-32 (173)
390 TIGR02238 recomb_DMC1 meiotic 96.6 0.0078 1.7E-07 68.6 9.6 114 576-691 93-243 (313)
391 PTZ00202 tuzin; Provisional 96.6 0.025 5.5E-07 66.6 13.7 62 543-613 259-320 (550)
392 COG4088 Predicted nucleotide k 96.6 0.0037 7.9E-08 66.4 6.3 22 582-603 4-25 (261)
393 TIGR02236 recomb_radA DNA repa 96.6 0.011 2.3E-07 67.1 10.4 117 575-692 91-245 (310)
394 PF12780 AAA_8: P-loop contain 96.6 0.055 1.2E-06 60.4 15.7 171 547-732 9-213 (268)
395 PRK09519 recA DNA recombinatio 96.6 0.0093 2E-07 74.9 10.4 116 576-691 57-194 (790)
396 PF00448 SRP54: SRP54-type pro 96.6 0.0073 1.6E-07 64.3 8.3 110 579-700 1-133 (196)
397 PRK04841 transcriptional regul 96.6 0.029 6.4E-07 72.1 15.4 151 580-753 33-219 (903)
398 PRK12724 flagellar biosynthesi 96.5 0.023 5E-07 66.9 12.9 115 579-702 223-354 (432)
399 PRK05800 cobU adenosylcobinami 96.5 0.012 2.5E-07 61.4 9.3 94 581-677 3-113 (170)
400 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0086 1.9E-07 66.6 8.8 68 581-648 82-159 (264)
401 PRK11889 flhF flagellar biosyn 96.5 0.021 4.6E-07 66.7 12.1 92 552-647 217-329 (436)
402 PRK13695 putative NTPase; Prov 96.5 0.017 3.6E-07 59.8 10.4 22 582-603 3-24 (174)
403 PRK13946 shikimate kinase; Pro 96.5 0.0049 1.1E-07 64.5 6.4 34 578-611 9-42 (184)
404 KOG3347|consensus 96.5 0.0021 4.5E-08 65.1 3.2 35 580-616 8-42 (176)
405 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.021 4.6E-07 61.4 11.3 109 575-692 12-152 (224)
406 PLN02200 adenylate kinase fami 96.5 0.0033 7.1E-08 68.7 5.1 41 575-617 39-79 (234)
407 smart00534 MUTSac ATPase domai 96.5 0.013 2.9E-07 61.4 9.5 102 582-695 2-123 (185)
408 COG0703 AroK Shikimate kinase 96.5 0.0043 9.3E-08 64.6 5.6 32 580-611 3-34 (172)
409 cd00544 CobU Adenosylcobinamid 96.4 0.02 4.3E-07 59.6 10.5 71 582-654 2-89 (169)
410 PHA02774 E1; Provisional 96.4 0.013 2.8E-07 71.1 10.2 33 580-612 435-468 (613)
411 COG3854 SpoIIIAA ncharacterize 96.4 0.0075 1.6E-07 65.1 7.2 70 580-649 138-229 (308)
412 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0097 2.1E-07 65.2 8.5 36 582-617 2-40 (249)
413 KOG2383|consensus 96.4 0.013 2.9E-07 67.5 9.6 161 576-765 111-297 (467)
414 cd00227 CPT Chloramphenicol (C 96.4 0.0028 6.1E-08 65.7 4.0 38 580-617 3-40 (175)
415 PLN03187 meiotic recombination 96.4 0.01 2.3E-07 68.3 8.9 115 576-691 123-273 (344)
416 cd03238 ABC_UvrA The excision 96.4 0.029 6.2E-07 58.8 11.4 113 581-714 23-162 (176)
417 PRK13764 ATPase; Provisional 96.4 0.0057 1.2E-07 75.0 7.0 69 579-648 257-334 (602)
418 PRK06217 hypothetical protein; 96.4 0.0031 6.6E-08 65.9 4.0 31 581-611 3-33 (183)
419 COG4650 RtcR Sigma54-dependent 96.4 0.0091 2E-07 66.0 7.6 71 575-651 204-295 (531)
420 cd02020 CMPK Cytidine monophos 96.4 0.003 6.5E-08 62.5 3.7 30 582-611 2-31 (147)
421 PF05272 VirE: Virulence-assoc 96.3 0.0092 2E-07 63.7 7.6 124 555-714 34-168 (198)
422 PLN02674 adenylate kinase 96.3 0.019 4.2E-07 63.1 10.2 39 577-617 29-67 (244)
423 PRK00279 adk adenylate kinase; 96.3 0.023 5E-07 60.9 10.6 33 582-616 3-35 (215)
424 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.02 4.4E-07 61.6 10.2 38 575-612 16-56 (229)
425 cd01428 ADK Adenylate kinase ( 96.3 0.0031 6.8E-08 65.7 3.7 34 582-617 2-35 (194)
426 PRK14531 adenylate kinase; Pro 96.3 0.0038 8.2E-08 65.3 4.3 35 580-616 3-37 (183)
427 cd02027 APSK Adenosine 5'-phos 96.3 0.0096 2.1E-07 60.4 7.1 36 582-617 2-40 (149)
428 cd03243 ABC_MutS_homologs The 96.3 0.013 2.9E-07 62.1 8.5 22 580-601 30-51 (202)
429 PF01745 IPT: Isopentenyl tran 96.3 0.0079 1.7E-07 64.5 6.6 129 582-727 4-137 (233)
430 PRK08233 hypothetical protein; 96.3 0.018 3.9E-07 59.2 9.2 33 580-612 4-37 (182)
431 PRK08154 anaerobic benzoate ca 96.3 0.012 2.6E-07 66.9 8.4 35 576-610 130-164 (309)
432 PTZ00088 adenylate kinase 1; P 96.3 0.0041 8.8E-08 67.8 4.5 33 578-610 5-37 (229)
433 PTZ00035 Rad51 protein; Provis 96.3 0.022 4.8E-07 65.6 10.6 115 575-690 114-264 (337)
434 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.017 3.7E-07 58.2 8.6 101 578-695 25-128 (144)
435 cd03223 ABCD_peroxisomal_ALDP 96.3 0.025 5.4E-07 58.3 10.0 111 579-713 27-160 (166)
436 cd03247 ABCC_cytochrome_bd The 96.3 0.031 6.7E-07 58.0 10.7 113 579-713 28-169 (178)
437 cd02021 GntK Gluconate kinase 96.2 0.0036 7.8E-08 62.8 3.7 32 582-615 2-33 (150)
438 TIGR03819 heli_sec_ATPase heli 96.2 0.035 7.5E-07 64.1 12.1 70 579-648 178-263 (340)
439 PRK14960 DNA polymerase III su 96.2 0.0044 9.6E-08 76.1 5.0 49 140-199 12-63 (702)
440 PRK04195 replication factor C 96.2 0.0053 1.1E-07 73.9 5.5 51 140-198 11-64 (482)
441 smart00487 DEXDc DEAD-like hel 96.2 0.026 5.7E-07 57.2 9.8 33 580-612 25-62 (201)
442 cd01125 repA Hexameric Replica 96.2 0.019 4.2E-07 62.5 9.3 20 582-601 4-23 (239)
443 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.021 4.7E-07 63.2 9.7 39 575-613 32-73 (259)
444 COG2804 PulE Type II secretory 96.2 0.012 2.5E-07 70.1 7.9 100 535-648 227-337 (500)
445 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.021 4.5E-07 57.9 8.8 104 580-697 26-143 (157)
446 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0083 1.8E-07 62.9 5.9 103 580-695 26-133 (177)
447 PLN03186 DNA repair protein RA 96.1 0.02 4.3E-07 66.1 9.4 116 576-692 120-271 (342)
448 PRK14530 adenylate kinase; Pro 96.1 0.0046 1E-07 66.3 4.0 35 581-617 5-39 (215)
449 TIGR03499 FlhF flagellar biosy 96.1 0.021 4.5E-07 64.2 9.4 37 578-614 193-234 (282)
450 TIGR00390 hslU ATP-dependent p 96.1 0.0072 1.6E-07 70.9 5.8 62 144-207 13-79 (441)
451 PRK04040 adenylate kinase; Pro 96.1 0.027 5.8E-07 59.6 9.7 30 579-608 2-33 (188)
452 PRK13808 adenylate kinase; Pro 96.1 0.04 8.8E-07 63.2 11.7 33 582-616 3-35 (333)
453 TIGR01313 therm_gnt_kin carboh 96.1 0.0043 9.3E-08 63.2 3.5 32 582-615 1-32 (163)
454 COG4178 ABC-type uncharacteriz 96.1 0.017 3.6E-07 70.6 8.9 27 577-603 417-443 (604)
455 PRK04328 hypothetical protein; 96.1 0.04 8.8E-07 60.7 11.3 38 575-612 19-59 (249)
456 TIGR02655 circ_KaiC circadian 96.1 0.02 4.4E-07 69.0 9.7 77 576-652 260-367 (484)
457 TIGR02239 recomb_RAD51 DNA rep 96.1 0.019 4.2E-07 65.5 9.0 117 575-692 92-244 (316)
458 PF10443 RNA12: RNA12 protein; 96.1 0.067 1.4E-06 62.9 13.4 36 695-732 197-232 (431)
459 PRK14961 DNA polymerase III su 96.1 0.0061 1.3E-07 70.7 5.0 48 140-198 13-63 (363)
460 PF04665 Pox_A32: Poxvirus A32 96.1 0.06 1.3E-06 59.2 12.3 132 578-728 12-169 (241)
461 TIGR02525 plasmid_TraJ plasmid 96.1 0.014 3.1E-07 67.9 7.8 68 581-648 151-235 (372)
462 cd03227 ABC_Class2 ABC-type Cl 96.0 0.033 7.1E-07 57.2 9.6 23 579-601 21-43 (162)
463 PF09848 DUF2075: Uncharacteri 96.0 0.015 3.3E-07 67.1 7.9 23 581-603 3-25 (352)
464 PRK08691 DNA polymerase III su 96.0 0.0059 1.3E-07 75.6 4.7 49 140-199 13-64 (709)
465 PRK03731 aroL shikimate kinase 96.0 0.0061 1.3E-07 62.6 4.2 31 580-610 3-33 (171)
466 PRK06547 hypothetical protein; 96.0 0.0066 1.4E-07 63.3 4.4 35 577-611 13-47 (172)
467 cd02019 NK Nucleoside/nucleoti 96.0 0.014 3E-07 51.5 5.8 31 582-612 2-33 (69)
468 COG5245 DYN1 Dynein, heavy cha 96.0 0.036 7.9E-07 71.8 11.3 173 577-763 1492-1711(3164)
469 PRK14730 coaE dephospho-CoA ki 96.0 0.032 7E-07 59.2 9.7 36 581-618 3-38 (195)
470 PF13481 AAA_25: AAA domain; P 96.0 0.016 3.5E-07 60.3 7.3 72 582-653 35-156 (193)
471 PRK05057 aroK shikimate kinase 96.0 0.0065 1.4E-07 63.1 4.2 34 579-612 4-37 (172)
472 PHA02544 44 clamp loader, smal 96.0 0.0082 1.8E-07 67.8 5.4 50 139-199 17-69 (316)
473 PRK10416 signal recognition pa 96.0 0.074 1.6E-06 60.9 13.1 36 577-612 112-150 (318)
474 cd02022 DPCK Dephospho-coenzym 96.0 0.067 1.5E-06 55.8 11.7 34 582-618 2-35 (179)
475 PRK05703 flhF flagellar biosyn 96.0 0.049 1.1E-06 64.7 11.9 36 579-614 221-261 (424)
476 TIGR02533 type_II_gspE general 95.9 0.022 4.8E-07 68.7 8.8 94 541-648 217-321 (486)
477 cd03280 ABC_MutS2 MutS2 homolo 95.9 0.034 7.3E-07 59.0 9.3 20 581-600 30-49 (200)
478 PHA02530 pseT polynucleotide k 95.9 0.018 3.9E-07 64.5 7.5 39 579-618 2-40 (300)
479 PRK14962 DNA polymerase III su 95.9 0.0084 1.8E-07 71.9 5.1 48 140-198 11-61 (472)
480 cd03115 SRP The signal recogni 95.9 0.049 1.1E-06 56.1 10.0 33 582-614 3-38 (173)
481 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0074 1.6E-07 62.4 4.0 34 581-616 5-38 (188)
482 PRK12323 DNA polymerase III su 95.9 0.0082 1.8E-07 73.7 4.8 48 140-198 13-63 (700)
483 PRK05541 adenylylsulfate kinas 95.8 0.021 4.6E-07 59.0 7.3 40 578-617 6-48 (176)
484 TIGR00152 dephospho-CoA kinase 95.8 0.025 5.4E-07 59.3 7.9 35 582-618 2-36 (188)
485 PF08423 Rad51: Rad51; InterP 95.8 0.024 5.2E-07 62.8 8.1 115 583-698 42-192 (256)
486 PRK14956 DNA polymerase III su 95.8 0.0086 1.9E-07 71.5 4.8 48 140-198 15-65 (484)
487 PRK14529 adenylate kinase; Pro 95.8 0.038 8.1E-07 60.1 9.3 35 581-617 2-36 (223)
488 PF13479 AAA_24: AAA domain 95.8 0.044 9.4E-07 58.9 9.8 68 579-650 3-80 (213)
489 TIGR01351 adk adenylate kinase 95.8 0.0073 1.6E-07 64.5 3.8 33 582-616 2-34 (210)
490 PRK02496 adk adenylate kinase; 95.8 0.0079 1.7E-07 62.6 3.9 30 581-610 3-32 (184)
491 cd03228 ABCC_MRP_Like The MRP 95.8 0.024 5.2E-07 58.5 7.5 105 578-697 27-158 (171)
492 PRK06581 DNA polymerase III su 95.8 0.11 2.3E-06 57.1 12.5 136 579-733 15-165 (263)
493 PRK06696 uridine kinase; Valid 95.8 0.013 2.9E-07 63.2 5.7 39 578-616 21-62 (223)
494 PRK14955 DNA polymerase III su 95.8 0.0096 2.1E-07 70.0 4.9 48 140-198 13-63 (397)
495 TIGR01526 nadR_NMN_Atrans nico 95.8 0.017 3.7E-07 66.2 6.8 71 579-650 162-243 (325)
496 PRK14964 DNA polymerase III su 95.8 0.0095 2E-07 71.6 4.9 48 140-198 10-60 (491)
497 PHA00012 I assembly protein 95.8 0.038 8.3E-07 62.7 9.3 112 582-703 4-137 (361)
498 COG1066 Sms Predicted ATP-depe 95.8 0.055 1.2E-06 63.0 10.7 144 581-730 95-257 (456)
499 cd03246 ABCC_Protease_Secretio 95.8 0.023 5.1E-07 58.7 7.2 101 581-695 30-157 (173)
500 PRK14963 DNA polymerase III su 95.8 0.0095 2.1E-07 72.1 4.8 48 140-198 11-61 (504)
No 1
>KOG0731|consensus
Probab=100.00 E-value=1.8e-111 Score=1001.49 Aligned_cols=607 Identities=60% Similarity=0.904 Sum_probs=536.9
Q ss_pred CCCCCCch-hHHHHHHHHHHHHHHHHHhccCC--ceeeeHHHHHHHHhhCCceeEEEEEc-CeEEEEEEcCCCCCC--Cc
Q psy5440 389 DFSGGDKE-KYFMYGLIGSVAVLAAAVMYEMN--YKEITWKDFINNVLTKGIVEKLEVVN-KKWVRVKLLPGNSMD--GA 462 (1036)
Q Consensus 389 ~~~w~~~~-~~~l~~~~~~~~~~~~~~~~~~~--~~~i~~~~f~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~--~~ 462 (1036)
..||++.. +|..|..+.+..++.++.....+ ..+|+|.+|++++++.|.|.++++++ ...+++.+..+.... ..
T Consensus 129 ~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~~~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~ 208 (774)
T KOG0731|consen 129 NRPLPDMRKRFVQSTPKGLAVFMEALDLDRVESGWQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLI 208 (774)
T ss_pred CCCcccccccceecchhHHHHHHHHhccccccccceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccce
Confidence 67777665 54555444444433333332222 24899999999999999999999998 666788777655431 23
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcCCCCCCCcceeEeccch-hhhHHhHHhHhhhhh----------c--CC--C-----
Q psy5440 463 NFLWFNIGSVDSFERNLELAQAQMHIDPANYLPVIYKTEIE-LSSLSGILPTLLIIG----------R--RG--G----- 522 (1036)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~p~~~~~~----------~--~~--~----- 522 (1036)
..+|+++++++.|+++|..++..+++.....+||.|..... ..++..++|++++++ + .+ +
T Consensus 209 ~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~ 288 (774)
T KOG0731|consen 209 QKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGP 288 (774)
T ss_pred eeEEEEecccchHHHHHHHHHHHhCCCceeEeeeEEeecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCc
Confidence 45689999999999999999999999998999999966544 344556677555444 1 10 1
Q ss_pred ccccccccccccccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 523 GLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
+.| ...++..++-+..+++|+|+||+|++++|++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|
T Consensus 289 ~~f-~~~ks~~k~~~~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 289 RLF-GVSKSYKKFKNEGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred cee-eeccceeeeccCCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence 123 2233322444456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCC-CCCCCCChhHHHHHHHHHHHhhcCcC
Q psy5440 603 ANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRG-GRNFGGHSEQENTLNQLLVEMDGFNT 681 (1036)
Q Consensus 603 agvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~-~~~~~~~~e~~~~LnqLL~emDg~~~ 681 (1036)
+++||+++++++|+++++|.+++++|++|..|+.++||||||||||++++.|+ ....++++++++++||||.+||||..
T Consensus 368 AgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 368 AGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred cCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999994 44567899999999999999999999
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHH
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVC 761 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lv 761 (1036)
..+|||||+||+++.||+||+|||||||+|++++||..+|.+|+++|++..+.+.+...+ ..+|.+|+||+|+||+|+|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl-~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDL-SKLASLTPGFSGADLANLC 526 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhH-HHHHhcCCCCcHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999988755444444 4599999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcce
Q psy5440 762 NEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGY 841 (1036)
Q Consensus 762 neAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~ 841 (1036)
|+|++.|+|+....|+..||+.|++|++.|+++++..++.++++.+||||||||+++|++++.||+.+|+|+| |+++||
T Consensus 527 neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~ 605 (774)
T KOG0731|consen 527 NEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGY 605 (774)
T ss_pred hHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 669999
Q ss_pred eEecccccccCCHHHHHHHHHHhcCchhhhhhhcc-ccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCCccc
Q psy5440 842 AQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFG-RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPGEMV 920 (1036)
Q Consensus 842 ~~~~p~e~~~~tk~~l~~~i~~~LgGraAE~i~fg-~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~~ 920 (1036)
++|.|.+++++|+++|++||||+|||||||+++|| ++||||++||++||++||+||++|||++++|+++|..+..+++.
T Consensus 606 a~~~P~~~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~ 685 (774)
T KOG0731|consen 606 AQYLPTDDYLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDES 685 (774)
T ss_pred EEECCcccccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCccccccc
Confidence 99999999999999999999999999999999997 89999999999999999999999999999999999766666777
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCCCCC--CCchhhhhcC
Q psy5440 921 LEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPE--KSTYEEFVEG 998 (1036)
Q Consensus 921 ~~~~~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~~~~--~~~~~~~~~~ 998 (1036)
..++||+.+++.||.||++|+..||++|.++|++|++.++.||+.||++|+|+++|+.++++.+|+.+ +.+|.+++.+
T Consensus 686 ~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~~~ 765 (774)
T KOG0731|consen 686 FRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQKIG 765 (774)
T ss_pred ccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999876 6778887776
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-107 Score=951.37 Aligned_cols=559 Identities=53% Similarity=0.827 Sum_probs=492.8
Q ss_pred cCCceeeeHHHHHHHHhhCCceeEEEEEcC-eEEEEEEcCCCCCCCcceEEeecCCcchHHHHHHHHHHhcCCCCCCCcc
Q psy5440 417 EMNYKEITWKDFINNVLTKGIVEKLEVVNK-KWVRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPANYLP 495 (1036)
Q Consensus 417 ~~~~~~i~~~~f~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 495 (1036)
......++|++|+. ++..+.|++|++..+ ..+.+....+.. ..+++..+..+ .+|.......++......+
T Consensus 19 ~~~~~~~~~~~f~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 90 (596)
T COG0465 19 NSSSKQVTYSQFIQ-LVSGGKVSSVSIKGDSKTVNLKLKDGSK----NTVYLPKGVND---PNLVSFLDSNNITESGFIP 90 (596)
T ss_pred hcccccccHHHHHH-HHhcCCceEEEEcCCceEEEEEecCCcc----eEEeecCCccc---HHHHHHHHhcCCcccccCC
Confidence 44445799999998 699999999999765 356666655521 12233322112 2244444444443222222
Q ss_pred eeEeccchhhhHHhHHhHhhhhh------------cCCCccccccccccccccccCCCCccccccccChHHHHHHHHHHH
Q psy5440 496 VIYKTEIELSSLSGILPTLLIIG------------RRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVN 563 (1036)
Q Consensus 496 ~~~~~~~~~~~l~~~~p~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~ 563 (1036)
.......+++.+++|++++++ +.++++| ++++++++.+.+....++|.||+|++++|+++.|+|+
T Consensus 91 --~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~-~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVd 167 (596)
T COG0465 91 --EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAF-SFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVD 167 (596)
T ss_pred --CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-CCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHH
Confidence 111122344567788877665 1112367 7999999999988899999999999999999999999
Q ss_pred HhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEE
Q psy5440 564 FLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643 (1036)
Q Consensus 564 ~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILf 643 (1036)
+|++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|++++++|++|++|++++|||||
T Consensus 168 fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIF 247 (596)
T COG0465 168 FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIF 247 (596)
T ss_pred HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHH
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRAS 723 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~ 723 (1036)
|||||+++++|+.+..++++++++++||||++||||..+.+|+|||+||||+.|||||+|||||||+|.++.||..+|.+
T Consensus 248 IDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~ 327 (596)
T COG0465 248 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQ 327 (596)
T ss_pred EehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCcccccccccccc
Q psy5440 724 IFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEE 803 (1036)
Q Consensus 724 IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e 803 (1036)
|++.|++... ++.+..+..+|+.|+||+|+|++|++|+|++.|+|+++..|++.||++|++++++|+++++.++++++
T Consensus 328 IlkvH~~~~~--l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~e 405 (596)
T COG0465 328 ILKVHAKNKP--LAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAE 405 (596)
T ss_pred HHHHHhhcCC--CCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhh
Confidence 9999999766 34445556699999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEecccc-cccCCHHHHHHHHHHhcCchhhhhhhcc-ccccC
Q psy5440 804 KKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFG-RITTG 881 (1036)
Q Consensus 804 ~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~e-~~~~tk~~l~~~i~~~LgGraAE~i~fg-~~ttG 881 (1036)
++.+||||+|||++++.++.+|+++||||+|||.++|||+++|++ ++++||++++++|+++|||||||+++|| ++|||
T Consensus 406 k~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttG 485 (596)
T COG0465 406 KKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTG 485 (596)
T ss_pred hcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999986 8999999999999999999999999999 99999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCC---CcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5440 882 AEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQP---GEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKAS 958 (1036)
Q Consensus 882 a~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~---~~~~~~~~~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~ 958 (1036)
|++||++||++|+.||++|||++++|++.|...+. |.....+.+||+|++.||.||++++++||++|++||.+|++.
T Consensus 486 a~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~ 565 (596)
T COG0465 486 ASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDA 565 (596)
T ss_pred chhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999976533 111134579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHhhcCCCCCC
Q psy5440 959 VEKVAERLLKKEILDRNDMIELLGTRPFPE 988 (1036)
Q Consensus 959 l~~la~~Lle~e~L~~~ei~~il~~~~~~~ 988 (1036)
++.+|+.|+++|||++++|.+|+..++.+.
T Consensus 566 l~~~~~~Lle~Eti~~~~i~~i~~~~~~~~ 595 (596)
T COG0465 566 LETLAEMLLEKETIDAEEIKDILAGRKLPS 595 (596)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHhcccCCC
Confidence 999999999999999999999998876543
No 3
>KOG0734|consensus
Probab=100.00 E-value=1.1e-104 Score=892.06 Aligned_cols=450 Identities=48% Similarity=0.779 Sum_probs=420.6
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
...+++|+||-|+||||++|.|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++||++.++++|-++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
|+|+++++||++|..|++++||||||||||+++.+|.... .....+++||||.+||||..+.+||||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999886542 2378899999999999999999999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVM 778 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~ 778 (1036)
+||.||||||++|.+|.||..+|.+||+.|+..+. .+.+.+...||+-|+||+||||+|++|.||+.|+.++...+++
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999776 3444455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEeccc-ccccCCHHHH
Q psy5440 779 KHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPR-EQYLYSKEQL 857 (1036)
Q Consensus 779 ~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~-e~~~~tk~~l 857 (1036)
.|++.|-+++++|.++++..++++.++.+||||+|||+|+.+.+.+.|++|+||.|||.+||.+.++|+ |++..||.||
T Consensus 532 ~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~ 611 (752)
T KOG0734|consen 532 KHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQL 611 (752)
T ss_pred HHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHhcCchhhhhhhccc--cccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCCcccccCCCChHHHHHHHH
Q psy5440 858 LDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPGEMVLEKPYSESTAQLIDN 935 (1036)
Q Consensus 858 ~~~i~~~LgGraAE~i~fg~--~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~id~ 935 (1036)
++++.||||||||||++||. ||+||++||++||++|++||+.||||+++|++++.....+ ...+.+++.+||.
T Consensus 612 LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~-----~s~~~~t~~lida 686 (752)
T KOG0734|consen 612 LARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS-----SSLSPRTQELIDA 686 (752)
T ss_pred HHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC-----CCCCchhHHHHHH
Confidence 99999999999999999994 9999999999999999999999999999999998754332 3457789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCCCCCCCchhhhhcC
Q psy5440 936 EVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPEKSTYEEFVEG 998 (1036)
Q Consensus 936 ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~~~~~~~~~~~~~~ 998 (1036)
||++||+++|+||+.||+.|...+++||++||+.|||+++||.+++.+.....+...+.+++.
T Consensus 687 Ei~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~~~~k~~~~~~~~~ 749 (752)
T KOG0734|consen 687 EIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKSDELKTNQESVVEQ 749 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccchhhhcccchhhcC
Confidence 999999999999999999999999999999999999999999999976533334444555554
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1e-89 Score=826.12 Aligned_cols=546 Identities=45% Similarity=0.738 Sum_probs=467.0
Q ss_pred eeeeHHHHHHHHhhCCceeEEEEEcCeEEE-EE--EcC-CCCCCCcceEEeecCC-cchHHHHHHHHHHhcCCCCCCCcc
Q psy5440 421 KEITWKDFINNVLTKGIVEKLEVVNKKWVR-VK--LLP-GNSMDGANFLWFNIGS-VDSFERNLELAQAQMHIDPANYLP 495 (1036)
Q Consensus 421 ~~i~~~~f~~~~~~~~~v~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 495 (1036)
.+++|++|++ +++.|+|.+|.+.++.... +. ... |.. ...| ....+. .+.+...|.. .++.
T Consensus 50 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~----~~~~------ 115 (638)
T CHL00176 50 SRMTYGRFLE-YLDMGWIKKVDLYDNGRTAIVEASSPELGNR--PQRI-RVELPVGASELIQKLKE----ANID------ 115 (638)
T ss_pred ceecHHHHHH-HHHcCCeeEEEEecCceEEEEeeccccCCCc--ceeE-EEeCCCCCHHHHHHHHH----cCCc------
Confidence 4799999998 7999999999988654321 21 111 111 1123 222331 2334444433 3332
Q ss_pred eeEecc----chhhhHHhH-HhHhhhhh------c----CC--C-ccccccccccccccccCCCCccccccccChHHHHH
Q psy5440 496 VIYKTE----IELSSLSGI-LPTLLIIG------R----RG--G-GLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVE 557 (1036)
Q Consensus 496 ~~~~~~----~~~~~l~~~-~p~~~~~~------~----~~--~-~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~e 557 (1036)
+.+... ....++.++ +|++++.+ . .+ + +++ ++++++++........++|+||+|++++|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~ 194 (638)
T CHL00176 116 FDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLM-NFGKSKARFQMEADTGITFRDIAGIEEAKEE 194 (638)
T ss_pred EEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-ccchhHHHhhcccCCCCCHHhccChHHHHHH
Confidence 222111 112233333 45554432 0 11 2 244 6888888887777788999999999999999
Q ss_pred HHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcC
Q psy5440 558 IMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKH 637 (1036)
Q Consensus 558 L~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~ 637 (1036)
+.++++++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.+++++|.++++|.+..+++++|..|+..
T Consensus 195 l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~ 274 (638)
T CHL00176 195 FEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKEN 274 (638)
T ss_pred HHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCC
Q psy5440 638 APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPD 717 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd 717 (1036)
+||||||||||+++..|+.+..+.+++..+++++||.+||++..+.+|+||+|||+++.||++|+||||||++|.+++|+
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 99999999999999888766666778888999999999999998899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCcccccc
Q psy5440 718 IKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTN 797 (1036)
Q Consensus 718 ~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~ 797 (1036)
.++|.+||+.|++... +..+..+..+|..|+||+++||+++|++|++.|++++...|+.+||++|+++++.|++++.
T Consensus 355 ~~~R~~IL~~~l~~~~--~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~- 431 (638)
T CHL00176 355 REGRLDILKVHARNKK--LSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP- 431 (638)
T ss_pred HHHHHHHHHHHHhhcc--cchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-
Confidence 9999999999998743 4556677889999999999999999999999999999999999999999999999988764
Q ss_pred ccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEeccc-ccccCCHHHHHHHHHHhcCchhhhhhhcc
Q psy5440 798 VLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGGRVSEEIFFG 876 (1036)
Q Consensus 798 ~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~-e~~~~tk~~l~~~i~~~LgGraAE~i~fg 876 (1036)
..++++++++|||||||||++++++..+++++|||+|||.++||+++.|. +++++||.+|+++|+++|||||||+++||
T Consensus 432 ~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg 511 (638)
T CHL00176 432 LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFG 511 (638)
T ss_pred cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999996 57899999999999999999999999999
Q ss_pred --ccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCC------cccccCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy5440 877 --RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPG------EMVLEKPYSESTAQLIDNEVRSLISNAYTRT 948 (1036)
Q Consensus 877 --~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~------~~~~~~~~s~~~~~~id~ev~~ll~~ay~~a 948 (1036)
++|+||++||++||++|+.||++|||++ +|+++|..+..+ .+...+.||+++++.||.||+++|++||++|
T Consensus 512 ~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a 590 (638)
T CHL00176 512 STEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYA 590 (638)
T ss_pred CCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999995 999998654431 2233467999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCC
Q psy5440 949 KALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRP 985 (1036)
Q Consensus 949 ~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~ 985 (1036)
++||++||+.|++||++||++|+|+++||.+|++...
T Consensus 591 ~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 591 YQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYT 627 (638)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcC
Confidence 9999999999999999999999999999999997753
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.3e-86 Score=806.22 Aligned_cols=554 Identities=42% Similarity=0.713 Sum_probs=467.7
Q ss_pred CceeeeHHHHHHHHhhCCceeEEEEEcCeEEEEEEcCCCCCCCcceEEeecCCcchHHHHHHHHHHhcCCCCCCCcceeE
Q psy5440 419 NYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPANYLPVIY 498 (1036)
Q Consensus 419 ~~~~i~~~~f~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 498 (1036)
....++|+.|++ .+.++.+.++.+.. ..+++....+ ..|..+.+.....+...|.. .++... ..+...
T Consensus 28 ~~~~~~~~~~~~-~~~~~~v~Ev~~~~-~tIK~~~~e~-----~~~~~~~~~~~~~l~~~l~~----~~v~~~-~~~~~~ 95 (644)
T PRK10733 28 NGRKVDYSTFLQ-EVNQDQVREARING-REINVTKKDS-----NRYTTYIPVNDPKLLDNLLT----KNVKVV-GEPPEE 95 (644)
T ss_pred CcccCCHHHHHH-HHHcCCeEEEEEeC-CEEEEEEcCC-----ceEEEeCCCCCHHHHHHHHH----cCCeEE-ecCccc
Confidence 345799999998 58999998886643 4455544322 23432211111222222322 222111 011110
Q ss_pred eccchhhhHHhHHhHhhhhh------cC--CC---ccccccccccccccccCCCCccccccccChHHHHHHHHHHHHhcC
Q psy5440 499 KTEIELSSLSGILPTLLIIG------RR--GG---GLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKN 567 (1036)
Q Consensus 499 ~~~~~~~~l~~~~p~~~~~~------~~--~~---~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~ 567 (1036)
......++..++|++++++ +. +| +++ .+.........+.....+|+|+.|++.+++++.++++++++
T Consensus 96 -~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~-af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~ 173 (644)
T PRK10733 96 -PSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAM-SFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLRE 173 (644)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeE-EeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhC
Confidence 0111122233345444443 11 12 455 57777777777777789999999999999999999999999
Q ss_pred chhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCc
Q psy5440 568 PQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 568 p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 647 (1036)
+..|..++..+|+|+||+||||||||++|+++|+++++||+.++++++.++++|.+..+++++|..|+..+|||||||||
T Consensus 174 ~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEi 253 (644)
T PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI 253 (644)
T ss_pred HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHH
Q psy5440 648 DAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 648 DaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
|+++.+|+....+++.+..+++|+||.+||++..+.+++||+|||+|+.||++++||||||++|.+++||.++|.+||+.
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 99999887766667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhh
Q psy5440 728 HLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTV 807 (1036)
Q Consensus 728 ~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~v 807 (1036)
|++... +..+..+..+|+.|+||||+||.++|++|++.|+++++..|+..||+.|++++..|++++...+++++++++
T Consensus 334 ~~~~~~--l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~ 411 (644)
T PRK10733 334 HMRRVP--LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKEST 411 (644)
T ss_pred HhhcCC--CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 998765 333444567899999999999999999999999999999999999999999999999888888899999999
Q ss_pred hHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEecccc-cccCCHHHHHHHHHHhcCchhhhhhhcc--ccccCcch
Q psy5440 808 AYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFG--RITTGAED 884 (1036)
Q Consensus 808 A~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~e-~~~~tk~~l~~~i~~~LgGraAE~i~fg--~~ttGa~~ 884 (1036)
||||+||||++++++..+++++|+|+|||.++||+++.|.+ .+++||.+|+++|+++|||||||+++|| ++||||++
T Consensus 412 a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~ 491 (644)
T PRK10733 412 AYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASN 491 (644)
T ss_pred HHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHH
Confidence 99999999999999999999999999999999999999974 6678999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccCCCC-----CcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5440 885 DLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQP-----GEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASV 959 (1036)
Q Consensus 885 Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~-----~~~~~~~~~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l 959 (1036)
||++||+||+.||++||||+++|++.|..... .+....++||+++++.||.||+++|++||++|++||++||+.|
T Consensus 492 Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l 571 (644)
T PRK10733 492 DIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDIL 571 (644)
T ss_pred HHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999864322 1223357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHhhcCCCCCC
Q psy5440 960 EKVAERLLKKEILDRNDMIELLGTRPFPE 988 (1036)
Q Consensus 960 ~~la~~Lle~e~L~~~ei~~il~~~~~~~ 988 (1036)
++||++|+|+|||+++||.+|+......+
T Consensus 572 ~~la~~Lle~etl~~~ei~~i~~~~~~~~ 600 (644)
T PRK10733 572 HAMKDALMKYETIDAPQIDDLMARRDVRP 600 (644)
T ss_pred HHHHHHHHHhceeCHHHHHHHHhcCCCCC
Confidence 99999999999999999999998765433
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.8e-81 Score=743.28 Aligned_cols=458 Identities=58% Similarity=0.913 Sum_probs=426.5
Q ss_pred CccccccccccccccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHH
Q psy5440 522 GGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
|+.+ .++++++++..++.+.++|+||+|++++|+++.+++.++++++.|..+|.++|+|+||+||||||||++|+++|+
T Consensus 32 ~~~~-~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 32 GRAF-SFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CCCc-CCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4445 688999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC
Q psy5440 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT 681 (1036)
Q Consensus 602 eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~ 681 (1036)
++++||+.+++++|.+.++|.+..+++++|+.|+..+||||||||||.++.+++....+.+.+..+++++||.+||++..
T Consensus 111 ~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 111 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 99999999999999999999999999999999999999999999999999888765445567778999999999999988
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHH
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVC 761 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lv 761 (1036)
+.+++||+|||+|+.||++|+||||||+.|++++|+.++|.+||+.+++... ...+..+..+|..|.||+++||+++|
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~--~~~~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK--LAPDVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC--CCcchhHHHHHHhCCCCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998655 22344567899999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcce
Q psy5440 762 NEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGY 841 (1036)
Q Consensus 762 neAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~ 841 (1036)
++|++.|.+++...|+.+||+.|++++..+.+.+...+++++++++||||+||||++|++++.+++.+|+|.|||.++||
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~ 348 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGY 348 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccce
Confidence 99999999998999999999999999999988887888999999999999999999999999999999999999999999
Q ss_pred eEecccc-cccCCHHHHHHHHHHhcCchhhhhhhccccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCC---
Q psy5440 842 AQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPG--- 917 (1036)
Q Consensus 842 ~~~~p~e-~~~~tk~~l~~~i~~~LgGraAE~i~fg~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~--- 917 (1036)
+++.|.+ .+..|+++|+++|+++|||||||+++||++|+||++||++||++|+.||.+|||++.+|++++......
T Consensus 349 ~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l 428 (495)
T TIGR01241 349 TQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFL 428 (495)
T ss_pred EEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCcccccc
Confidence 9999875 678999999999999999999999999999999999999999999999999999999999998643211
Q ss_pred --cccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhc
Q psy5440 918 --EMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLG 982 (1036)
Q Consensus 918 --~~~~~~~~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~ 982 (1036)
+....+++|+.++..||.||+++|++||++|++||++||++|++||++|+++|+|+++||++|++
T Consensus 429 ~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 429 GRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 22345789999999999999999999999999999999999999999999999999999999985
No 7
>KOG0733|consensus
Probab=100.00 E-value=2.7e-56 Score=508.85 Aligned_cols=249 Identities=41% Similarity=0.669 Sum_probs=230.6
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
-++|+|+||.++++++.+|...|.+ +|+|+.|..+|+..|.|||||||||||||+||||+|+|++.+|++|.+.+++++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4679999999999999999887777 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
|+|+++..||.+|..|+.++|||||+||||+|.++|+... .....+++||||++|||...+.+|.|||||||||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999997653 4556789999999999999999999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhcC---
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTP--GFTGADIANVCNEAALIAARDLH--- 773 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~--G~SgaDL~~LvneAal~A~r~~~--- 773 (1036)
||++||||||+.+++++|+.++|.+||+.+.++.+..++.+..++.||+.+. |||||||+.||++|++.|+++.-
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999976666777888888998887 99999999999999999998621
Q ss_pred -------------CcccHHHHHHHHHHHHcC
Q psy5440 774 -------------TTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 774 -------------~~It~~d~~~Aiervi~g 791 (1036)
..++..||++|+.++...
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 126778999999987554
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.9e-56 Score=559.15 Aligned_cols=315 Identities=21% Similarity=0.298 Sum_probs=270.2
Q ss_pred hHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh------------------------------
Q psy5440 570 QYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF------------------------------ 619 (1036)
Q Consensus 570 ~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~------------------------------ 619 (1036)
.+.++|+++|+||||+||||||||+||||+|+++++||+.|++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 45678999999999999999999999999999999999999999998643
Q ss_pred -------------ccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---CCC
Q psy5440 620 -------------VGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---TTT 683 (1036)
Q Consensus 620 -------------vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---~~~ 683 (1036)
+++...+++.+|+.|++++||||||||||+++.+ +....++++||.+||+.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCC
Confidence 2223445999999999999999999999999754 123357999999999874 456
Q ss_pred CeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhc--CCCCCCCCh-hhHHHHHhhcCCCCCHHHHHHH
Q psy5440 684 NVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHL--KPLKTDLDR-DDLSRKLAALTPGFTGADIANV 760 (1036)
Q Consensus 684 ~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L--~~l~~~l~~-~~l~~~LA~~T~G~SgaDL~~L 760 (1036)
+|+||||||+|+.|||||+||||||+.|.|+.|+..+|.+++..++ +... +.. ...+..+|+.|+|||||||+++
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~--L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH--LEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCC--CCcccccHHHHHHhCCCCCHHHHHHH
Confidence 8999999999999999999999999999999999999999998654 3333 221 1235789999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccC-----
Q psy5440 761 CNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPR----- 835 (1036)
Q Consensus 761 vneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~pr----- 835 (1036)
||||++.|+++++..|+.++|+.|++|+++|++.+.. +..++ .+|+||+||||+++.+...+|+++|||.|+
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r 1926 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCK 1926 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCcccc
Confidence 9999999999999999999999999999999876533 33333 479999999999999999999999999532
Q ss_pred -CCCcceeEecccccccCCHHHHHHHHHHhcCchhhhhhhccccccCcchHHHHHHHHHHHHHHhcCCCCC-----CCcc
Q psy5440 836 -GKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEK-----VGNV 909 (1036)
Q Consensus 836 -g~~lG~~~~~p~e~~~~tk~~l~~~i~~~LgGraAE~i~fg~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~-----~g~~ 909 (1036)
+.++||++|+|.+ +.+++.+|+.+|++||||||||+++|+..+ .|+.||+.|||.+. .|.+
T Consensus 1927 ~~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedlwf~~~~------------~~~n~It~yg~vEnD~~La~glL 1993 (2281)
T CHL00206 1927 EGDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDLWSLPGP------------DEKNGITSYGLVENDSDLVHGLL 1993 (2281)
T ss_pred CcccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhhccCcch------------hhhcCcccccchhhhhHHhHhHH
Confidence 4457999999977 899999999999999999999999997644 57899999999988 5555
Q ss_pred cc
Q psy5440 910 SF 911 (1036)
Q Consensus 910 ~~ 911 (1036)
.+
T Consensus 1994 e~ 1995 (2281)
T CHL00206 1994 EV 1995 (2281)
T ss_pred Hh
Confidence 43
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-56 Score=487.43 Aligned_cols=254 Identities=46% Similarity=0.775 Sum_probs=244.4
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++++|+||.|+++++++|+|.|+. |++|+.|..+|+.+|+|||||||||||||+||||+|++.++.|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 357889999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
.+|+|+++..||++|+.|+.++||||||||||+++.+|.....+++.+..+|+-+||.+||||....+|-||+||||++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||||+|||||||.|+||+||.++|.+||+.|.+..+ +..+..++.||+.|+|+|||||+++|.||.+.|+|+.+..|
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCee
Confidence 9999999999999999999999999999999999776 56666778899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCcc
Q psy5440 777 VMKHFEQAIERVVAGME 793 (1036)
Q Consensus 777 t~~d~~~Aiervi~gle 793 (1036)
+++||.+|+++++..-.
T Consensus 381 t~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 381 TMEDFLKAVEKVVKKKK 397 (406)
T ss_pred cHHHHHHHHHHHHhccc
Confidence 99999999999987543
No 10
>KOG0730|consensus
Probab=100.00 E-value=3.6e-53 Score=490.86 Aligned_cols=247 Identities=46% Similarity=0.768 Sum_probs=231.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+-++++|+||.|++++|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++++|++|.+.++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56789999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|+|.+++.+|++|.+|+..+|||||+||||+++..|+... +....++++|||++|||+....+|+||||||||+.|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 99999999999999999999999999999999999997432 256789999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC--Cc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH--TT 775 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~--~~ 775 (1036)
|+||+||||||+.|+|++||.+.|.+||+.++++.. +..+..++.||..|.|||||||.++|++|++.|+++.- ..
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~ 661 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE 661 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999776 44556678899999999999999999999999999854 56
Q ss_pred ccHHHHHHHHHHHHc
Q psy5440 776 IVMKHFEQAIERVVA 790 (1036)
Q Consensus 776 It~~d~~~Aiervi~ 790 (1036)
|+.+||++|+..+..
T Consensus 662 i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 662 ITWQHFEEALKAVRP 676 (693)
T ss_pred ccHHHHHHHHHhhcc
Confidence 899999999987543
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3e-43 Score=434.91 Aligned_cols=247 Identities=49% Similarity=0.791 Sum_probs=224.1
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.+.++|+||+|++++|++|.+.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++++|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4578999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
|+|.++..++.+|..|+..+||||||||||++++.|+... .......++++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998876432 23345678999999999998889999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc------
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL------ 772 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~------ 772 (1036)
++++||||||+.|++++||.++|.+||+.+++... ++.+..+..+|+.|.||||+||.++|++|++.|+++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~--~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP--LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999988665 3444556789999999999999999999999998852
Q ss_pred ------------CCcccHHHHHHHHHHHHc
Q psy5440 773 ------------HTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 773 ------------~~~It~~d~~~Aiervi~ 790 (1036)
...|+.+||.+|+.++-.
T Consensus 683 ~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 683 EKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987533
No 12
>KOG0733|consensus
Probab=100.00 E-value=6e-44 Score=408.03 Aligned_cols=227 Identities=41% Similarity=0.725 Sum_probs=212.2
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
...+++|+||.|++....+|.+++.++++|+.|..+|..+|+|+|||||||||||+||+|||+++++||+.|++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhH-HHHHHHHHHHhhcCcCC----CCeEEEEecCC
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQ-ENTLNQLLVEMDGFNTT----TNVVVLAATNR 693 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~-~~~LnqLL~emDg~~~~----~~ViVIaaTN~ 693 (1036)
+.|++++++|++|++|+.++||||||||||+++++|.. .+.++ .+++.|||..||++... .+|+||+||||
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999865 23444 46889999999998654 57999999999
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
||.|||||+|+||||+.|.+..|+..+|.+||+..++.++ ++.+....+||++|+||.||||..||.+|+..|+++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr--l~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR--LSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC--CCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 445666789999999999999999999999999987
No 13
>KOG0729|consensus
Probab=100.00 E-value=2.4e-44 Score=378.38 Aligned_cols=257 Identities=44% Similarity=0.736 Sum_probs=243.1
Q ss_pred ccCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 537 NSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 537 ~~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
.++.+.+++.||.||.+.++.|+|+|+. |.+|++|..+|+.+|+|+|||||||||||++|||+|+..+.-|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3467899999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 616 LEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
+.+|+|+++..+|++|+.|+...-||||+||||+++..|-....+++.+..+++-.|+..+|||..+.++-|+.|||+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999999999998877666788888999999999999999999999999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTT 775 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~ 775 (1036)
.|||||+||||+||.++|.+||.++|..||+.|.+... ++.+.-++.||++++.-+|++|+.+|.+|.+.|+|..+..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarlcpnstgaeirsvcteagmfairarrk~ 405 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhh
Confidence 99999999999999999999999999999999998776 5555666789999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCcccc
Q psy5440 776 IVMKHFEQAIERVVAGMEKK 795 (1036)
Q Consensus 776 It~~d~~~Aiervi~gle~~ 795 (1036)
.|..||..|+++++.|..+-
T Consensus 406 atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 406 ATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999886553
No 14
>KOG0728|consensus
Probab=100.00 E-value=1.6e-43 Score=369.69 Aligned_cols=251 Identities=42% Similarity=0.736 Sum_probs=238.8
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.-++-+++=|.|.+..++++.|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+|+++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34567889999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|.|++...+|++|-.|+..+|+|||+||||+++..|..+..+++++..++.-.||..+|||....++-||.|||+.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
||||+||||+||.|+||+|+.+.|.+||+.|.+..+ +.....++.+|+..+|.||+++..+|.+|.+.|+|+.+-.+|
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvt 377 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVT 377 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcccc
Confidence 999999999999999999999999999999998766 445555678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy5440 778 MKHFEQAIERVVAG 791 (1036)
Q Consensus 778 ~~d~~~Aiervi~g 791 (1036)
++||+-|+.+++..
T Consensus 378 qedfemav~kvm~k 391 (404)
T KOG0728|consen 378 QEDFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 15
>KOG0727|consensus
Probab=100.00 E-value=8.1e-43 Score=364.71 Aligned_cols=250 Identities=43% Similarity=0.701 Sum_probs=234.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.+++.||.|++-.|++++|.|+. |.+.+.|++.|+.+|+|+|||||||||||+||+|+|+.....|+.+.+|+|+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56789999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|.|++...+|++|..|+.++|+||||||||++..+|-....+.+.+..+++-.||..||||....+|-||.|||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999987777778888899999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
||||+||||+||.|+||+||..+++-+|.....+.. +..+..++.+..+....||+||..+|.+|.+.|.|.++-.|.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~--ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN--LSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhccc--CCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 999999999999999999999999999999888655 444455556667888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q psy5440 778 MKHFEQAIERVVA 790 (1036)
Q Consensus 778 ~~d~~~Aiervi~ 790 (1036)
..||++|...++.
T Consensus 386 ~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 386 QKDFEKAYKTVVK 398 (408)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988654
No 16
>KOG0652|consensus
Probab=100.00 E-value=4.4e-43 Score=368.02 Aligned_cols=251 Identities=39% Similarity=0.678 Sum_probs=238.7
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.+.-+++||.|++..+++|.|.|-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+-+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 356778999999999999999887766 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
.||.|.+++.+|+.|..|+..+||||||||+|+++.+|-.+...++.+..+++-.||..+|||.++..|-||||||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999888878888999999999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||||+|.||+||.|+||.|+.+.|..|++.|.+... +..+..++.||+.|.+|+|++...+|-+|.++|+|+....|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn--v~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN--VSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC--CCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 9999999999999999999999999999999999776 66677788999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHc
Q psy5440 777 VMKHFEQAIERVVA 790 (1036)
Q Consensus 777 t~~d~~~Aiervi~ 790 (1036)
+.+||.+++..+..
T Consensus 401 ~heDfmegI~eVqa 414 (424)
T KOG0652|consen 401 THEDFMEGILEVQA 414 (424)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988754
No 17
>KOG0726|consensus
Probab=100.00 E-value=1.8e-43 Score=375.80 Aligned_cols=251 Identities=43% Similarity=0.720 Sum_probs=236.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
..+.-+|.||.|++...++|.|.|+. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 35678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|.|.++..+|++|..|..++|+|+||||||+++.+|-..++++..+..+++-.||..+|||.++.+|-||.|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
||||+||||+||.|.|+.||...+..||..|..... +..+..++.+...-..+|||||..+|.+|.+.|+|..+..++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt--l~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt 415 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT--LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVT 415 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccc--hhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhcc
Confidence 999999999999999999999999999999998665 444444555666677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy5440 778 MKHFEQAIERVVAG 791 (1036)
Q Consensus 778 ~~d~~~Aiervi~g 791 (1036)
++||..|.++++..
T Consensus 416 ~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 416 MEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 18
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=3e-42 Score=366.63 Aligned_cols=204 Identities=45% Similarity=0.768 Sum_probs=177.5
Q ss_pred cHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEecccc-cccCCHH
Q psy5440 777 VMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPRE-QYLYSKE 855 (1036)
Q Consensus 777 t~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~e-~~~~tk~ 855 (1036)
|++||++|+++++.|++++...+++++++++|||||||||++++++..+++.+|||+|||.++||+++.|.+ .+..||+
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 678999999999999998778899999999999999999999999988999999999999999999999976 4689999
Q ss_pred HHHHHHHHhcCchhhhhhhcc--ccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCCc------ccccCCCCh
Q psy5440 856 QLLDRMCMTLGGRVSEEIFFG--RITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPGE------MVLEKPYSE 927 (1036)
Q Consensus 856 ~l~~~i~~~LgGraAE~i~fg--~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~------~~~~~~~s~ 927 (1036)
+|+++|+++|||||||+++|| ++|+||++||++||+||+.||.+||||+.+|++++......+ ....+++|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999 999999999999999999999999999999999986543321 112457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHh
Q psy5440 928 STAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIEL 980 (1036)
Q Consensus 928 ~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~i 980 (1036)
.+...+|.||+++|++||++|++||++||+.|++||++|+++++|+++||.+|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999986
No 19
>KOG0736|consensus
Probab=100.00 E-value=1.2e-41 Score=397.28 Aligned_cols=250 Identities=38% Similarity=0.686 Sum_probs=222.2
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|.-++|+|+||.|.+++|.+|.+-|.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|++|.+.+++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456789999999999999999999999 999998754 788888999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--CCCCeEEEEecCCC
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--TTTNVVVLAATNRV 694 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--~~~~ViVIaaTN~p 694 (1036)
+||+|+++++||++|++||..+|||||+||+|+++++|+.....+ ..+.+++.|||.||||+. ...+|+||+|||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998754332 356789999999999997 56789999999999
Q ss_pred ccccHHhhCCCCcceEEEecCC-ChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAP-DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALT-PGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~P-d~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T-~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
|.|||||+||||||..+++.++ |.+.+..||+...++.+ ++.+..+..+|+.+ +.|||||+-.+|..|.+.|+++.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk--LdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK--LDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc--CCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877 67889999999998777 55566667788776 47999999999999999998863
Q ss_pred C-----------------CcccHHHHHHHHHHHHcC
Q psy5440 773 H-----------------TTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 773 ~-----------------~~It~~d~~~Aiervi~g 791 (1036)
- -.|+++||.+++++....
T Consensus 900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 1 137899999998885443
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.7e-42 Score=358.88 Aligned_cols=239 Identities=37% Similarity=0.586 Sum_probs=219.8
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
-.+++|+||+|++++|+.-+-++.+|+||++|.++ .|++||+|||||||||++|+|+|+++++||+.+.+.+++..+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 35799999999999999999999999999998776 489999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH
Q psy5440 620 VGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 620 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp 699 (1036)
+|.++.+++++|+.|++.+|||+||||+|+++-.|..+...+ ....++|.||++|||+..+.+|+.|||||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 999999999999999999999999999999987776544322 345789999999999999999999999999999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH-HHHHHHHHHHHHhcCCcccH
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA-NVCNEAALIAARDLHTTIVM 778 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~-~LvneAal~A~r~~~~~It~ 778 (1036)
|+++ ||...|+|.+|+.++|..|++.+++.+...++. .++.++..|.|+||+||. .++..|...|+.++++.|+.
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~--~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA--DLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCcccc--CHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 9999 999999999999999999999999977744444 467899999999999997 57778888999999999999
Q ss_pred HHHHHHHHH
Q psy5440 779 KHFEQAIER 787 (1036)
Q Consensus 779 ~d~~~Aier 787 (1036)
+||+.|+.+
T Consensus 346 edie~al~k 354 (368)
T COG1223 346 EDIEKALKK 354 (368)
T ss_pred HHHHHHHHh
Confidence 999999987
No 21
>KOG0738|consensus
Probab=100.00 E-value=7.4e-41 Score=367.88 Aligned_cols=244 Identities=39% Similarity=0.624 Sum_probs=218.9
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.+++++|+||+|++++|+-|+|.|-. +..|+.|+.+ .++-+|||++||||||||+||||||.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 46779999999999999999998887 8888887653 566799999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC-CC---eEEEEecCC
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT-TN---VVVLAATNR 693 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~-~~---ViVIaaTN~ 693 (1036)
+|.|++++.||-+|+.|+.++|++|||||||+|+.+|+.. +.|+...++-+.||..|||.... ++ |.|+||||.
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 9999999999999999999999999999999999998764 46777788999999999998553 34 899999999
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~ 773 (1036)
|+.||+||+| ||...|+||+||.++|..+++..++... ++.+..+..|++.+.||||+||.++|++|++.+.|+.-
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~--~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE--LDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc--CCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999998655 55666677899999999999999999999999998632
Q ss_pred -----------------CcccHHHHHHHHHHHH
Q psy5440 774 -----------------TTIVMKHFEQAIERVV 789 (1036)
Q Consensus 774 -----------------~~It~~d~~~Aiervi 789 (1036)
.+|+..||+.|+.++-
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 3477888888887753
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5e-40 Score=378.28 Aligned_cols=252 Identities=42% Similarity=0.682 Sum_probs=233.0
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.+.++|+||+|++.+|++|.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.++++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 356789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
..|+|.+...++++|..|+..+||||||||||+++.+|.....+.+.+...++.+||..||++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999877544444455667889999999999988889999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||+++||||||+.|++++|+.++|..||+.++.... +..+..+..++..|.||||+||.++|++|++.|.++++..|
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999998765 44455567889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy5440 777 VMKHFEQAIERVVAG 791 (1036)
Q Consensus 777 t~~d~~~Aiervi~g 791 (1036)
+.+||.+|+.+++.+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998765
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.1e-39 Score=369.68 Aligned_cols=254 Identities=49% Similarity=0.786 Sum_probs=233.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+||+|+++++++|.+.+.. +.+|+.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 55789999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|.|.+...++.+|..|+..+||||||||||+++.++......+..+..+++.++|.+++++....+++||+|||+++.|
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999998876554444566778899999999999888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++|+||||||+.|+|++|+.++|.+||+.|++... +..+..+..+|..|.||+|+||+++|++|++.|.++....|+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~--~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~ 361 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN--LADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVT 361 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC--CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 999999999999999999999999999999998765 333345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCccc
Q psy5440 778 MKHFEQAIERVVAGMEK 794 (1036)
Q Consensus 778 ~~d~~~Aiervi~gle~ 794 (1036)
.+||.+|++++...-..
T Consensus 362 ~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 362 MEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999999998765443
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=369.28 Aligned_cols=251 Identities=42% Similarity=0.706 Sum_probs=232.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+||.|+++++++|.+++.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|.|.+...++.+|..|+.++||||||||||+++.+|.....++..+...++.+||..||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876655556667778899999999999888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++++||||||+.|+|++||.++|.+||+.|+.... +..+..+..++..+.|+||+||+++|++|++.|.++++..|+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~--l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt 413 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT--LAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVT 413 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC--CCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccC
Confidence 999999999999999999999999999999998665 344445677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy5440 778 MKHFEQAIERVVAG 791 (1036)
Q Consensus 778 ~~d~~~Aiervi~g 791 (1036)
.+||..|+++++..
T Consensus 414 ~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 414 QADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998654
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-38 Score=372.71 Aligned_cols=246 Identities=47% Similarity=0.743 Sum_probs=229.9
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
..+.++|.|+.|++++|+.+.+.+.+ ++.++.|...|.+.|+|+|||||||||||+||+|+|.+++.+|+.+.++++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 56789999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|+|.++++++.+|..|+..+||||||||||++.+.|+.... ....+++++||.+||+.....+|+||+|||+|+.|
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 999999999999999999999999999999999998865432 22368999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc-CCcc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL-HTTI 776 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~-~~~I 776 (1036)
|+|++||||||+.|++++||.++|.+||+.|++.....+..+.+++.+++.|.||+|+||..+|++|++.+.++. ...+
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999665445567777889999999999999999999999999998 7889
Q ss_pred cHHHHHHHHHH
Q psy5440 777 VMKHFEQAIER 787 (1036)
Q Consensus 777 t~~d~~~Aier 787 (1036)
+++||..|+..
T Consensus 472 ~~~~~~~a~~~ 482 (494)
T COG0464 472 TLDDFLDALKK 482 (494)
T ss_pred cHHHHHHHHHh
Confidence 99999999988
No 26
>KOG0735|consensus
Probab=100.00 E-value=3.5e-38 Score=365.19 Aligned_cols=227 Identities=41% Similarity=0.684 Sum_probs=212.6
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
..+++|+||.|+.++|+.|++++.+ -|.|..|...+.+.+.|||||||||||||+||-|+|..++..|+++.+.+++++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 3458999999999999999999999 789999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
|.|.+++.+|++|..|+..+|||||+||+|+++++|+.+..| ...+++||||++|||...-.+|.|+|||.|||.||
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC---chHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 999999999999999999999999999999999999876543 45689999999999999999999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
|||+||||+|+.++.+.|+..+|.+||+.....+. .+.+.+++.+|..|.|||||||..++..|-+.|.++
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~--~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL--KDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC--CccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987555 555677789999999999999999999998887765
No 27
>KOG0739|consensus
Probab=100.00 E-value=6.7e-38 Score=334.33 Aligned_cols=227 Identities=38% Similarity=0.607 Sum_probs=204.1
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++|+|+||+|.+.+|+.|.|.|-. ++.|+.|.. +.++-+|+||||||||||+.||+|+|.|++..|++|+.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 367899999999999999999998877 888888764 345568999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVD 695 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd 695 (1036)
++|.|++++.|+.+|+.|+.+.|+||||||||+++..|+.+. ++..+++-..||+.|.|... +.+|+|++|||-|+
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 999999999999999999999999999999999998876543 44556778899999999844 56899999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
.||.|++| ||++.|+||+|+...|..+|+.|+....+.+.. ...+.|++.|+||||+||.-+++.|.+.-.|.
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~-~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTE-QDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccch-hhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999 999999999999999999999999877766654 45578999999999999999999988877665
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-36 Score=355.74 Aligned_cols=244 Identities=28% Similarity=0.478 Sum_probs=213.7
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
...++|+||.|++.+|+++.+....+ +..+..+|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999998866543 3455678999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH
Q psy5440 620 VGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 620 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp 699 (1036)
+|.++.+++++|..|+..+||||||||||.++..+... +......+++++||..|+. ...+|+||||||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654322 2234556788999998884 4568999999999999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHH
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMK 779 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~ 779 (1036)
+++||||||+.|+++.|+.++|.+||+.|++........+..+..+|+.|.||||+||+++|++|+..|..+. ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 9999999999999999999999999999998765333334556789999999999999999999999888764 578999
Q ss_pred HHHHHHHHHHc
Q psy5440 780 HFEQAIERVVA 790 (1036)
Q Consensus 780 d~~~Aiervi~ 790 (1036)
||..|+..+..
T Consensus 455 dl~~a~~~~~P 465 (489)
T CHL00195 455 DILLALKQFIP 465 (489)
T ss_pred HHHHHHHhcCC
Confidence 99999988654
No 29
>KOG0737|consensus
Probab=100.00 E-value=5.7e-37 Score=338.11 Aligned_cols=231 Identities=39% Similarity=0.610 Sum_probs=211.1
Q ss_pred cccccCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhc-CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 534 KLINSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLG-AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 534 ~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG-~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
.++.|.+++|+|+||.|+++++++|++.|-. ++.|+.|..-+ .++|+||||+||||||||++|+|+|.+++.+|+.|+
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3455688999999999999999999999988 89999885332 568999999999999999999999999999999999
Q ss_pred chhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCC--eEEEE
Q psy5440 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTN--VVVLA 689 (1036)
Q Consensus 612 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~--ViVIa 689 (1036)
.+.+.+++.|++.+.++.+|..|.+-.||||||||+|.+.+.|+ .+.|+.....-+++....||+.++.+ |+|+|
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998883 23566777788999999999988776 99999
Q ss_pred ecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 690 ATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 690 aTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
|||||..||.|++| |+.+.++|+.|+..+|.+||+..++..+ ++.+.++..+|..|.||||.||.++|+.|++..+
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~--~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~i 312 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK--LEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPI 312 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc--cCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHH
Confidence 99999999999999 9999999999999999999999999766 5566677889999999999999999999999888
Q ss_pred Hh
Q psy5440 770 RD 771 (1036)
Q Consensus 770 r~ 771 (1036)
|+
T Consensus 313 re 314 (386)
T KOG0737|consen 313 RE 314 (386)
T ss_pred HH
Confidence 75
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.4e-36 Score=344.28 Aligned_cols=248 Identities=48% Similarity=0.778 Sum_probs=227.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+||+|.++++++|.+.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45789999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.+.|.+...++.+|..++...||||||||+|.++..+.....++..+...++.+++.+++++....++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999988776544445566678899999999998888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++++||||||+.|+++.|+.++|.+||+.|+.... +..+..+..+++.|.||+|+||.++|++|++.|.++.+..|+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~ 352 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVT 352 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccC
Confidence 999999999999999999999999999999987655 233344678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy5440 778 MKHFEQAIERV 788 (1036)
Q Consensus 778 ~~d~~~Aierv 788 (1036)
.+||..|++++
T Consensus 353 ~~d~~~a~~~~ 363 (364)
T TIGR01242 353 MDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 31
>KOG0651|consensus
Probab=100.00 E-value=2.2e-37 Score=332.96 Aligned_cols=247 Identities=39% Similarity=0.713 Sum_probs=228.7
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
....++|+.|.|.-++..++++.+.. |.+|..|.++|+++|+|++||||||||||++|++||..+++.|+.++.+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 44568999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|.|+.+..+|+.|..|+...||||||||||+++.++.......+.+...||..|+.+||++.....|-+|+|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 99999999999999999999999999999999998885554455667789999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC--CCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK--TDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTT 775 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~--~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~ 775 (1036)
||+|+||||+|+.+++|+|+...|..|++.|.+.+. ..++ .+.+.+.++||.|+|+++.|.||.+.|++..+..
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid----~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~ 360 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID----DEAILKLVDGFNGADLRNVCTEAGMFAIPEERDE 360 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeecccccccccccc----HHHHHHHHhccChHHHhhhcccccccccchhhHH
Confidence 999999999999999999999999999999998765 2344 3456778999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy5440 776 IVMKHFEQAIERVV 789 (1036)
Q Consensus 776 It~~d~~~Aiervi 789 (1036)
+-++++..++.++-
T Consensus 361 vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 361 VLHEDFMKLVRKQA 374 (388)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999988753
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.3e-34 Score=333.68 Aligned_cols=255 Identities=33% Similarity=0.527 Sum_probs=210.7
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC----------
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP---------- 606 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp---------- 606 (1036)
.+.+.++|+||+|++++++++++.+.. +.+|+.|..+|.++|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456789999999999999999999887 889999999999999999999999999999999999998644
Q ss_pred eEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC
Q psy5440 607 FITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT 682 (1036)
Q Consensus 607 fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~ 682 (1036)
|+.++++++..+|+|.++..++.+|..|+.. .||||||||+|+++++|+.+. .++....++++||..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 6678888999999999999999999998764 699999999999998875432 2233456789999999999888
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC-CCC-----------CChhhHHHHH-----
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL-KTD-----------LDRDDLSRKL----- 745 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l-~~~-----------l~~~~l~~~L----- 745 (1036)
.+++||+|||+++.|||||+||||||+.|+|++|+.++|.+||+.|+... ... .+...+++..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998742 110 0111111111
Q ss_pred --------------------hhcCCCCCHHHHHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHHcCccc
Q psy5440 746 --------------------AALTPGFTGADIANVCNEAALIAARD----LHTTIVMKHFEQAIERVVAGMEK 794 (1036)
Q Consensus 746 --------------------A~~T~G~SgaDL~~LvneAal~A~r~----~~~~It~~d~~~Aiervi~gle~ 794 (1036)
...++.+||++|+++|.+|...|+++ ....|+.+|+..|+......-+.
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~ 484 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESED 484 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccccc
Confidence 11256678999999999888777765 34578888998888887655443
No 33
>KOG0730|consensus
Probab=100.00 E-value=2.6e-34 Score=334.30 Aligned_cols=279 Identities=35% Similarity=0.581 Sum_probs=244.0
Q ss_pred CCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
..++ .++.|+......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++|+|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4566 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 620 VGVGPSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 620 vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
.|++++.+|..|++|.+.+ |+||||||||+++++|.... ....++..||+..||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 99999999999999886532 235678999999999999889999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccH
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVM 778 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~ 778 (1036)
++++| ||||+.+.+..|+..+|.+|++.+.+.++.. .+.++..+|..|.||.|+||..+|++|++.+.|+ ++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~ 406 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TL 406 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc--chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hH
Confidence 99999 9999999999999999999999999987733 4566788999999999999999999999999988 88
Q ss_pred HHHHHHHHHHHcCccccccccccccchhhhHhhhh---------HHHHHhhhccCCCceeeeeccCC
Q psy5440 779 KHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAG---------HAVAGWFLRYADPLLKVSIIPRG 836 (1036)
Q Consensus 779 ~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaG---------HAlv~~~l~~~~~v~kvsI~prg 836 (1036)
++|+.|...+.....+... -+...+.+.+.| .-.|.|++.|++.+.++.|.|.-
T Consensus 407 ~~~~~A~~~i~psa~Re~~----ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk 469 (693)
T KOG0730|consen 407 EIFQEALMGIRPSALREIL----VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK 469 (693)
T ss_pred HHHHHHHhcCCchhhhhee----ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc
Confidence 8898888776433222211 122233344444 33589999999999999987754
No 34
>KOG0732|consensus
Probab=99.98 E-value=2.5e-32 Score=333.18 Aligned_cols=251 Identities=36% Similarity=0.641 Sum_probs=224.1
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEech
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGS 613 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~s 613 (1036)
+..+.|++|+|.+.++.+|+|+|.+ |..|+.|..+++.+|+|+|++||||||||+.|+|+|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999999 899999999999999999999999999999999999987 4688888999
Q ss_pred hhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
+..++|+|..+..++.+|++|++..|+|||.||||-+++.|.... ......++..||..|||+..++.|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999998875432 22345678899999999999999999999999
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~ 773 (1036)
|+.+||||+||||||+.+++++|+.+.|.+|+..|.++....+. ..+...||..|.||-|+||+.+|.+|++.+.++.-
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~-~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS-RELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC-HHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999987764444 55667899999999999999999999999998632
Q ss_pred ----------------CcccHHHHHHHHHHHHcCccc
Q psy5440 774 ----------------TTIVMKHFEQAIERVVAGMEK 794 (1036)
Q Consensus 774 ----------------~~It~~d~~~Aiervi~gle~ 794 (1036)
-.|...||-.|+.++.....+
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 136778888888887665444
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=5.6e-31 Score=293.48 Aligned_cols=260 Identities=19% Similarity=0.211 Sum_probs=191.1
Q ss_pred cccccc-ccChHHHHHHHHHHHHh-cCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhc
Q psy5440 543 VRFKDV-AGCEEAKVEIMEFVNFL-KNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFV 620 (1036)
Q Consensus 543 v~F~DV-~G~eeaK~eL~eiV~~L-k~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~v 620 (1036)
.+|+++ .|+--++.-+..++..+ |+- ...+|+++|++++||||||||||++|+++|++++++|+.++++++.++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345665 45544444444433221 111 12368899999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHhhc-----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHH-HHHHHHhhcC------------cCC
Q psy5440 621 GVGPSRVRDMFSMARK-----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTL-NQLLVEMDGF------------NTT 682 (1036)
Q Consensus 621 G~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~L-nqLL~emDg~------------~~~ 682 (1036)
|++++.+|++|..|+. .+||||||||||+++++|+.. ......+.+ .+||.+||+. ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 9999999999999975 469999999999999887632 122223444 7899888863 345
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC----CCHHHHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG----FTGADIA 758 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G----~SgaDL~ 758 (1036)
.+|+||+|||+|+.|||+|+||||||+.+ ..||.++|.+||+.|++... ++. ..+..|+..++| |.||--.
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~~-~dv~~Lv~~f~gq~~Df~GAlra 341 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VSR-EDVVKLVDTFPGQPLDFFGALRA 341 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CCH-HHHHHHHHcCCCCCchhhhHHHH
Confidence 67999999999999999999999999965 57999999999999998754 443 445678888877 5666666
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhh
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWF 820 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~ 820 (1036)
.+..++...-+.+. -++..-.+++..-+. ...+.+-....-.+-|+||.++..-
T Consensus 342 r~yd~~v~~~i~~~-------g~~~~~~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 342 RVYDDEVRKWIAEV-------GVENLGKKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred HHHHHHHHHHHHHh-------hHHHHHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 66666554433321 223333333433332 3345555666777889999987643
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=5.4e-31 Score=326.08 Aligned_cols=246 Identities=44% Similarity=0.698 Sum_probs=219.4
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.+.++|+||+|++++++.|.+++.. +++|+.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3579999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
+.|.....++.+|+.|....||||||||||.+.++++... ......++++|+..|+++.....++||++||+++.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988765321 2233568899999999998888999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC-----
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH----- 773 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~----- 773 (1036)
++++|+|||++.+.++.|+.++|.+||+.+.+... +..+..+..++..|.||+++|+..+|++|+..+.++..
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999988655 33344567899999999999999999999998877521
Q ss_pred --------------CcccHHHHHHHHHHHHc
Q psy5440 774 --------------TTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 774 --------------~~It~~d~~~Aiervi~ 790 (1036)
..++.+||..|+..+..
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccc
Confidence 24778899999887643
No 37
>KOG0741|consensus
Probab=99.97 E-value=9e-32 Score=304.21 Aligned_cols=249 Identities=35% Similarity=0.569 Sum_probs=212.2
Q ss_pred CCCcccccc--ccChHHHHHH--HHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-CeEEEechh
Q psy5440 540 DIGVRFKDV--AGCEEAKVEI--MEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-PFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV--~G~eeaK~eL--~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-pfi~Is~se 614 (1036)
+++..|+++ .|.+..-..+ +.++..+-.|+.-.++|++.-+|+|||||||||||++||.|..-++. +--.+|+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 356788874 5777655555 23555567788889999999999999999999999999999998864 456789999
Q ss_pred hhhhhccCchhHHHHHHHHhhcC--------CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeE
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKH--------APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVV 686 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~Vi 686 (1036)
++++|+|.+++++|++|..|.+. .=.||++||||+++++|+... ++.....+++||||..|||...-++|+
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 99999999999999999988531 126999999999999998643 334556789999999999999999999
Q ss_pred EEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC--CCCChhhHHHHHhhcCCCCCHHHHHHHHHHH
Q psy5440 687 VLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK--TDLDRDDLSRKLAALTPGFTGADIANVCNEA 764 (1036)
Q Consensus 687 VIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~--~~l~~~~l~~~LA~~T~G~SgaDL~~LvneA 764 (1036)
||+-|||.|.||+||+|||||..++++.+||.++|.+||+.|....+ ..++.+..++.||.+|..||||+|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998665 4466777888999999999999999999998
Q ss_pred HHHHHHhc---------------CCcccHHHHHHHHHHHH
Q psy5440 765 ALIAARDL---------------HTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 765 al~A~r~~---------------~~~It~~d~~~Aiervi 789 (1036)
.-.|..+. +-.|+++||..|++.+-
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 77776542 12489999999999873
No 38
>KOG0740|consensus
Probab=99.96 E-value=1.3e-29 Score=288.87 Aligned_cols=244 Identities=36% Similarity=0.588 Sum_probs=209.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
....+.|+|++|++.+|+.+.+.+.+ +..|..|..+ ..+++|+||.||||||||+|++|||.|+++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44569999999999999999999998 5668887665 345789999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC--CCCeEEEEecCCCc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--TTNVVVLAATNRVD 695 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--~~~ViVIaaTN~pd 695 (1036)
+|+|.++..+|.+|.-|+...|+||||||||.+..+|... .++.......++|..+++... .++|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 9999999999999999999999999999999999988432 355556778888888888755 45799999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC--
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH-- 773 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~-- 773 (1036)
.+|.|++| ||.+.+++|+||.+.|..+++..+......+. +.....|++.|.||++.||.++|.+|++.-.+...
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~-~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLS-DLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 99999999 99999999999999999999999986643333 44557899999999999999999999876555432
Q ss_pred -----------CcccHHHHHHHHHHHH
Q psy5440 774 -----------TTIVMKHFEQAIERVV 789 (1036)
Q Consensus 774 -----------~~It~~d~~~Aiervi 789 (1036)
..|+..||..|+..+-
T Consensus 379 ~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 379 TDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred hhhhhcchhccCCCCcchHHHHHHhhc
Confidence 3456666766666653
No 39
>KOG0731|consensus
Probab=99.96 E-value=5.7e-29 Score=297.74 Aligned_cols=199 Identities=44% Similarity=0.624 Sum_probs=157.8
Q ss_pred ccccchhHHHHHHHhcCCeeEEEEEc-CeEEEEEEcCCCCCC--CCceEEEEcCChhhHHHHHHHHHHhcCCCCCCCccc
Q psy5440 6 YKEITWKDFINNVLTKGIVEKLEVVN-KKWVRVKLLPGNSMD--GANFLWFNIGSVDSFERNLELAQAQMHIDPANYLPV 82 (1036)
Q Consensus 6 ~~~IsYs~F~~~ll~~g~V~~V~i~~-~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~ 82 (1036)
.++|+|++|..+++++|.|.++.+++ -..+++++....... ....+++++.+++.|+++++.++..+++...+..|+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV 242 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPV 242 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeee
Confidence 35899999999999999999999987 555677776654332 234566778889999999999999999888888888
Q ss_pred eeecchh-hhhHHhHHHHHHHHHHHHHHhcCCCC--C---CCCCCCCCcccccc--EEecCCCCccceeccccchHHHHH
Q psy5440 83 IYKTEIE-LSSLSGILPTLLIIGRSAEMMGGRPG--R---RGGGLFGGVMESTA--KLINSSDIGVRFKDVAGCEEAKVE 154 (1036)
Q Consensus 83 ~~~~~~~-~~~l~~llP~llii~~~~~~~~~~~~--~---gggg~~~~fGKSka--k~~~~~~~~vtf~DVaG~~eak~e 154 (1036)
.|..... ..++..++|++++++..+++++++++ . +|+++.+-|+.+++ ++-.+.+++|+|+||||+||||+|
T Consensus 243 ~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK~E 322 (774)
T KOG0731|consen 243 TYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAKEE 322 (774)
T ss_pred EEeecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHHHH
Confidence 8744333 34556677878888877777776643 1 12222233554444 444577889999999999999999
Q ss_pred HHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 155 IMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 155 l~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
|+|+|+|||||++|++|||||||||||+|| ||||||||+|+|++ +-||..
T Consensus 323 l~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~sv 375 (774)
T KOG0731|consen 323 LMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSV 375 (774)
T ss_pred HHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--Cceeee
Confidence 999999999999999999999999999999 99999999999999 777754
No 40
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-28 Score=289.35 Aligned_cols=189 Identities=32% Similarity=0.394 Sum_probs=140.2
Q ss_pred CccccchhHHHHHHHhcCCeeEEEEEcC-eEEEEEEcCCCCCCCCceEEEEcC--ChhhHHHHHHHHHHhcCCCCCCCcc
Q psy5440 5 NYKEITWKDFINNVLTKGIVEKLEVVNK-KWVRVKLLPGNSMDGANFLWFNIG--SVDSFERNLELAQAQMHIDPANYLP 81 (1036)
Q Consensus 5 ~~~~IsYs~F~~~ll~~g~V~~V~i~~~-~~~~v~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~v~~~~~~~ 81 (1036)
...+++|++|+..+ ..+.|+.+.+.+. ..+..+.+.+ ..+.++.+. .+..+...+...++.....+ +
T Consensus 21 ~~~~~~~~~f~~~~-~~~~v~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 90 (596)
T COG0465 21 SSKQVTYSQFIQLV-SGGKVSSVSIKGDSKTVNLKLKDG-----SKNTVYLPKGVNDPNLVSFLDSNNITESGFI----P 90 (596)
T ss_pred ccccccHHHHHHHH-hcCCceEEEEcCCceEEEEEecCC-----cceEEeecCCcccHHHHHHHHhcCCcccccC----C
Confidence 44789999999655 7778999998765 3555555443 122222221 23345555554433222221 1
Q ss_pred ceeecchhhhhHHhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccEEecCCCCccceeccccchHHHHHHHHHHHh
Q psy5440 82 VIYKTEIELSSLSGILPTLLIIGRSAEMMGGRPGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNF 161 (1036)
Q Consensus 82 ~~~~~~~~~~~l~~llP~llii~~~~~~~~~~~~~gggg~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~~ 161 (1036)
...+.+.+++++++|+++++++++|++++++.+|+++++|+||||+|+.+.+.+.+|+|+||||+||||+||.|+|||
T Consensus 91 --~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdf 168 (596)
T COG0465 91 --EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDF 168 (596)
T ss_pred --CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHH
Confidence 223455677889999999998666555443333333338999999999999989999999999999999999999999
Q ss_pred cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeeee
Q psy5440 162 LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLHN 207 (1036)
Q Consensus 162 Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~~ 207 (1036)
||||.+|+++|++|||||||+|| ||||||||+|+|++ +-||..+
T Consensus 169 Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iS 215 (596)
T COG0465 169 LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSIS 215 (596)
T ss_pred HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceecc
Confidence 99999999999999999999999 99999999999999 6676543
No 41
>KOG0743|consensus
Probab=99.87 E-value=1.6e-21 Score=221.39 Aligned_cols=206 Identities=27% Similarity=0.356 Sum_probs=165.2
Q ss_pred ccccccccChHHHHHHH-HHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 543 VRFKDVAGCEEAKVEIM-EFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~-eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
-+|+.|+-..+.|++|. ++.+|++..+-|.+.|...-+|.|||||||||||+++.|+|++++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 88999999999999996 5667789999999999999999999999999999999999999999999888776432
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCC---CCC-hhHHHHHHHHHHHhhcCcCCC--CeEEEEecCCCc
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNF---GGH-SEQENTLNQLLVEMDGFNTTT--NVVVLAATNRVD 695 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~---~~~-~e~~~~LnqLL~emDg~~~~~--~ViVIaaTN~pd 695 (1036)
. ..++.++..+... +||+|++||+-..-+..... +.+ ....-++..||..+||+.+.. --|||.|||+.+
T Consensus 274 -n-~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -D-SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -c-HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 3388887766554 69999999987543332211 111 123368999999999998877 689999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC--CCHHHHHHH
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG--FTGADIANV 760 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G--~SgaDL~~L 760 (1036)
.|||||+||||+|.+|+++..+..+-..++..++..-. ...++..+.+.-.+ .|+||++..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999987422 12333344443333 589988754
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=1.6e-20 Score=208.80 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=165.6
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCc---eeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEechh
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK---GAMLTGPPGTGKTLLAKATAGEA-------NVPFITVSGSE 614 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pk---GvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is~se 614 (1036)
+++++|++++|++|.+++.++..++.+..+|...|. ++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 348999999999999999987777777888876653 48999999999999999999875 23799999999
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
+...++|..+..++.+|+.|. ++||||||+|.+...++. .+.....++.|+..|+. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMEN--QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcH
Confidence 999999988888888888874 369999999999653321 22335677888888874 34568888888643
Q ss_pred c-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhh---HHHHHhhc--CCCCC-HHHHHHHHHH
Q psy5440 695 D-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDD---LSRKLAAL--TPGFT-GADIANVCNE 763 (1036)
Q Consensus 695 d-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~---l~~~LA~~--T~G~S-gaDL~~Lvne 763 (1036)
. .++|+|++ ||+..|.|++++.+++.+|+..++......++.+. +...+.+. .+.|. ++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34699999 99999999999999999999999986554444332 23333332 23444 7999999988
Q ss_pred HHHHHHHh
Q psy5440 764 AALIAARD 771 (1036)
Q Consensus 764 Aal~A~r~ 771 (1036)
|...-+.+
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 76655443
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=8.8e-21 Score=183.72 Aligned_cols=130 Identities=46% Similarity=0.725 Sum_probs=116.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCC
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFG 660 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~ 660 (1036)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.....++++|..++... ||||||||+|.+..+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999988761 12
Q ss_pred CChhHHHHHHHHHHHhhcCcCC-CCeEEEEecCCCccccHHhhCCCCcceEEEecC
Q psy5440 661 GHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 661 ~~~e~~~~LnqLL~emDg~~~~-~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~ 715 (1036)
........+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4556678899999999987665 569999999999999999998 89999999863
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=5.9e-20 Score=201.43 Aligned_cols=213 Identities=21% Similarity=0.266 Sum_probs=160.9
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCC---ceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEech
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIP---KGAMLTGPPGTGKTLLAKATAGEA-------NVPFITVSGS 613 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~p---kGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is~s 613 (1036)
.+++++|++++|+.|.+++..+.........|...+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478999999999999999999766666666676544 468999999999999999999864 2478999999
Q ss_pred hhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
++...++|.....++++|+.|. ++||||||+|.|.+.. ........++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998874 4699999999996311 1223346788888888853 455666666543
Q ss_pred Cc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhh---------cCCCCCHHHHHH
Q psy5440 694 VD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAA---------LTPGFTGADIAN 759 (1036)
Q Consensus 694 pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~---------~T~G~SgaDL~~ 759 (1036)
.+ .++|+|++ ||+..|.++.++.+++.+|++.++......++.+.+ ..++. ....-+++.+.|
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~-~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAK-WKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHH-HHHHHHHHHHHhccCCCCchHHHHHH
Confidence 22 47899999 999999999999999999999998765444444332 22321 111235788888
Q ss_pred HHHHHHHHHHH
Q psy5440 760 VCNEAALIAAR 770 (1036)
Q Consensus 760 LvneAal~A~r 770 (1036)
++..|....+.
T Consensus 230 ~~e~a~~~~~~ 240 (261)
T TIGR02881 230 IIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHH
Confidence 88877655543
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=4.2e-20 Score=205.18 Aligned_cols=212 Identities=21% Similarity=0.269 Sum_probs=165.3
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCC---CceeEEeCCCCCcHHHHHHHHHHhcC-------CCeEEEechhhh
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKI---PKGAMLTGPPGTGKTLLAKATAGEAN-------VPFITVSGSEFL 616 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~---pkGvLL~GPPGTGKTlLAkAIA~eag-------vpfi~Is~se~~ 616 (1036)
+++|++++|++|.+++..+..++.+..+|... ..++||+||||||||++|+++|..+. .+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888775 24899999999999999999998662 379999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC--
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV-- 694 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p-- 694 (1036)
..+.|..+..++.+|+.|. ++||||||+|.+.+.+.. .+.....++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 9999998888899998874 379999999999643221 22344677888888874 34678888887643
Q ss_pred c---cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhc------CCC-CCHHHHHHHHHHH
Q psy5440 695 D---VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAAL------TPG-FTGADIANVCNEA 764 (1036)
Q Consensus 695 d---~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~------T~G-~SgaDL~~LvneA 764 (1036)
+ .++|+|++ ||+..|.|++++.+++..|++.+++.....++.+.. ..++.. .+. -+++.+++++..|
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~-~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAE-EAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHH-HHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3 35899999 999999999999999999999999876544554332 223222 122 2478999999887
Q ss_pred HHHHHHh
Q psy5440 765 ALIAARD 771 (1036)
Q Consensus 765 al~A~r~ 771 (1036)
....+.+
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 6665543
No 46
>CHL00176 ftsH cell division protein; Validated
Probab=99.84 E-value=1.4e-20 Score=228.06 Aligned_cols=188 Identities=24% Similarity=0.348 Sum_probs=135.9
Q ss_pred CccccchhHHHHHHHhcCCeeEEEEEcCeEEE-EEEcCCCCCCCCceEEEEcC-ChhhHHHHHHHHHHhcCCCCCCCccc
Q psy5440 5 NYKEITWKDFINNVLTKGIVEKLEVVNKKWVR-VKLLPGNSMDGANFLWFNIG-SVDSFERNLELAQAQMHIDPANYLPV 82 (1036)
Q Consensus 5 ~~~~IsYs~F~~~ll~~g~V~~V~i~~~~~~~-v~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~v~~~~~~~~ 82 (1036)
..++++||+|++ .++.|+|++|.+.++.... +.............+++.++ ..+.+...|..+++++...+..
T Consensus 48 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---- 122 (638)
T CHL00176 48 ASSRMTYGRFLE-YLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPV---- 122 (638)
T ss_pred CCceecHHHHHH-HHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCC----
Confidence 445799999995 5599999999988654321 22111110001112333333 4567788888777766543321
Q ss_pred eeecchhhhhHHh-HHHHHHHHHHHHHHhcCCC-CCCCCCCCCCccccccEEecCCCCccceeccccchHHHHHHHHHHH
Q psy5440 83 IYKTEIELSSLSG-ILPTLLIIGRSAEMMGGRP-GRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVN 160 (1036)
Q Consensus 83 ~~~~~~~~~~l~~-llP~llii~~~~~~~~~~~-~~gggg~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~ 160 (1036)
..++|+.++.+ ++|+++++++|+++++++. ++++++.+++||+|++++....+++++|+||+|++++|++|.++++
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~ 200 (638)
T CHL00176 123 --LKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVS 200 (638)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHH
Confidence 12334455545 4688888777777666543 2222334689999999988888889999999999999999999999
Q ss_pred hcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 161 FLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 161 ~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
||++|++|+.+|+++|+||||+|| |||++|+|+|++++.
T Consensus 201 ~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 201 FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999 999999999999974
No 47
>KOG0742|consensus
Probab=99.83 E-value=9.3e-20 Score=202.21 Aligned_cols=236 Identities=22% Similarity=0.332 Sum_probs=177.8
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
+-.|++|+-....+..|.++...-.|.+.. -.+-++||+|||||||||++|+-||...|..+-.+.+.+..-. -.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-ch
Confidence 445999999999999999988876665542 2345789999999999999999999999999888888775421 12
Q ss_pred CchhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHH
Q psy5440 622 VGPSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKA 700 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpA 700 (1036)
.+-..+..+|+-|++.. .-+|||||.|++...|... ..+......||.||-.-- ....+++++.+||+|..||.|
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHH
Confidence 23457889999998754 5789999999998777532 245566788999985432 345578999999999999999
Q ss_pred hhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-------------------------CCCChhhHHHHHhhcCCCCCHH
Q psy5440 701 LLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-------------------------TDLDRDDLSRKLAALTPGFTGA 755 (1036)
Q Consensus 701 LlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-------------------------~~l~~~~l~~~LA~~T~G~Sga 755 (1036)
+-. |||..|+||+|..++|..+|..|+..+- ...+.+..+...|+.|.||||+
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 999 9999999999999999999998875211 0113456667889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 756 DIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 756 DL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
+|+.|+-..-..+.-+..-.++...|++.++..
T Consensus 580 EiakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 580 EIAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 999998642222222223345555566555543
No 48
>KOG0734|consensus
Probab=99.79 E-value=9.5e-20 Score=207.53 Aligned_cols=70 Identities=37% Similarity=0.612 Sum_probs=65.4
Q ss_pred cCCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeee
Q psy5440 134 NSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLL 205 (1036)
Q Consensus 134 ~~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~ 205 (1036)
.+...+|||+||-|+||||+||+|||+|||||++|++||+|+||||||+|| ||||||||+|+|++ +-||-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~--VPFF~ 367 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG--VPFFY 367 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC--CCeEe
Confidence 355678999999999999999999999999999999999999999999999 99999999999999 66654
No 49
>KOG0744|consensus
Probab=99.79 E-value=9.2e-19 Score=190.45 Aligned_cols=240 Identities=23% Similarity=0.320 Sum_probs=177.0
Q ss_pred ccccccChHHHHHHHHHHHH-hcCchhHhhhc-CCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CCeEEEech
Q psy5440 545 FKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLG-AKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VPFITVSGS 613 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG-~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~s 613 (1036)
|+.++=-...|++|..++.. |+..++-..-. +...+-+||+||||||||+|+||+|+.+. ..++.+|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55666667889999887766 33332211111 23445699999999999999999999773 468899999
Q ss_pred hhhhhhccCchhHHHHHHHHhhcC---CC--eEEEEcCchhhhhcCCCCC-CCCChhHHHHHHHHHHHhhcCcCCCCeEE
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKH---AP--CILFIDEIDAVGRKRGGRN-FGGHSEQENTLNQLLVEMDGFNTTTNVVV 687 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~---aP--~ILfIDEIDaL~~~r~~~~-~~~~~e~~~~LnqLL~emDg~~~~~~ViV 687 (1036)
.++++|.+++.+.|..+|.+.... .. ..++|||+++++..|.... .....+..+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999877542 12 3556999999998774332 22344567899999999999999999999
Q ss_pred EEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-------CC----C-----ChhhHHHHHhhc-CC
Q psy5440 688 LAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-------TD----L-----DRDDLSRKLAAL-TP 750 (1036)
Q Consensus 688 IaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-------~~----l-----~~~~l~~~LA~~-T~ 750 (1036)
++|+|-.+.||.|+.. |-|-..++++|+...|.+|++..+..+- .. + ..+.....++.. +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999998764211 00 0 112222333333 58
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 751 GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 751 G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
|.||+-|+.+=--|. |.--....|+..+|..|+-..
T Consensus 379 gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEA 414 (423)
T ss_pred CCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHH
Confidence 999999988754322 222223478888887776543
No 50
>KOG0735|consensus
Probab=99.78 E-value=2.5e-18 Score=201.30 Aligned_cols=281 Identities=20% Similarity=0.230 Sum_probs=203.6
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC----CCeEEEechhhhhhhcc
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN----VPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag----vpfi~Is~se~~e~~vG 621 (1036)
.|++-...+|++..+ ....| +..+.++||+||+|+|||.||+++++++. +++..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 567777777777654 22222 33456799999999999999999999874 57788999998877666
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh-hcC-cCCCCeEEEEecCCCccccH
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM-DGF-NTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em-Dg~-~~~~~ViVIaaTN~pd~LDp 699 (1036)
...+.++.+|.+|.+++|+||++|++|.|....+. ..+......+.++.+|..+ +-+ ..+..+.|||+.+....|+|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 67778899999999999999999999999862222 2233334444555554332 222 23445799999999999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh----cCCc
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD----LHTT 775 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~----~~~~ 775 (1036)
.|.+|++|+.++.++.|+..+|.+||+..++....+.. ..+++.++..|+||...|+..++.+|...|.++ ....
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999986543222 333455999999999999999999988777732 2236
Q ss_pred ccHHHHHHHHHHHHcCcccccccccc---ccchhhhHhhhhHHH---HHhhhccCCCceeeeeccCCCC
Q psy5440 776 IVMKHFEQAIERVVAGMEKKTNVLQP---EEKKTVAYHEAGHAV---AGWFLRYADPLLKVSIIPRGKG 838 (1036)
Q Consensus 776 It~~d~~~Aiervi~gle~~~~~l~~---~e~~~vA~HEaGHAl---v~~~l~~~~~v~kvsI~prg~~ 838 (1036)
+|.++|.+++.....-.-+.-..-.+ ..-.+-..||+-.++ +.|+..++..+..+.+.-|.+.
T Consensus 636 ltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~gi 704 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGI 704 (952)
T ss_pred chHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccce
Confidence 89999999999875432111111111 112345577777665 6777777776777666555443
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.1e-18 Score=201.42 Aligned_cols=263 Identities=38% Similarity=0.579 Sum_probs=212.2
Q ss_pred hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEE
Q psy5440 565 LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 565 Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
+..+..+..++..+|++++++||||||||++++++|.+ +.+++.+++.+....+.|....+.+.+|..++..+|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred cCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHH
Q psy5440 645 DEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASI 724 (1036)
Q Consensus 645 DEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~I 724 (1036)
||+|.+.+.+.. .........+.+++..|+++.... +++++.||++..+|+++++||||++.+.+..|+...|.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988765 223345678899999999998444 9999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc------CCcccHHHHHHHHHHHHcC--c--cc
Q psy5440 725 FKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL------HTTIVMKHFEQAIERVVAG--M--EK 794 (1036)
Q Consensus 725 L~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~------~~~It~~d~~~Aiervi~g--l--e~ 794 (1036)
+..+..... ...+.....++..+.|++++++..+|.++...+.++. ...++.+++.++++++... . ..
T Consensus 159 ~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (494)
T COG0464 159 LQIHTRLMF--LGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFED 236 (494)
T ss_pred HHHHHhcCC--CcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCC
Confidence 999987554 2224556778999999999999999999999888875 3458899999999997553 1 00
Q ss_pred cccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccC
Q psy5440 795 KTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPR 835 (1036)
Q Consensus 795 ~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~pr 835 (1036)
....+.+ .--.--..+..+-.+.|++.+.+-+.+..+.|+
T Consensus 237 ~~v~~~d-iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~ 276 (494)
T COG0464 237 EDVTLDD-IGGLEEAKEELKEAIETPLKRPELFRKLGLRPP 276 (494)
T ss_pred CCcceeh-hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCC
Confidence 0001110 011233556667778888887775554444443
No 52
>KOG0736|consensus
Probab=99.78 E-value=3.2e-18 Score=202.14 Aligned_cols=230 Identities=26% Similarity=0.421 Sum_probs=179.7
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHH
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRV 627 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~v 627 (1036)
..+.+.... ++++.+.-+..-...+.+.--.+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+
T Consensus 403 ~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 403 PPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred CccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 344444333 44455433333223344555679999999999999999999999999999999999999888999999
Q ss_pred HHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-CCCCeEEEEecCCCccccHHhhCCCC
Q psy5440 628 RDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-TTTNVVVLAATNRVDVLDKALLRPGR 706 (1036)
Q Consensus 628 r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-~~~~ViVIaaTN~pd~LDpALlRpGR 706 (1036)
...|..|+...|||||+-++|.++..+.. +..-.....++.++. .|-+. +..+++||++|++.+.|++.+++ -
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~ 553 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--L 553 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--h
Confidence 99999999999999999999999844322 222233455666665 33333 56789999999999999999999 7
Q ss_pred cceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH---hcC----------
Q psy5440 707 FDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR---DLH---------- 773 (1036)
Q Consensus 707 Fdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r---~~~---------- 773 (1036)
|-..|.++.|+.++|.+||+.++..+. ++.+...+.++..|+||+.+|+..++..+.+.+.. +..
T Consensus 554 f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~ 631 (953)
T KOG0736|consen 554 FLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDE 631 (953)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccc
Confidence 778899999999999999999998665 67777888999999999999999998765222221 111
Q ss_pred -------CcccHHHHHHHHHHH
Q psy5440 774 -------TTIVMKHFEQAIERV 788 (1036)
Q Consensus 774 -------~~It~~d~~~Aierv 788 (1036)
..++++||..|+.+.
T Consensus 632 ~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 632 GELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred cccccccceecHHHHHHHHHHH
Confidence 458999999999976
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=1.1e-17 Score=177.48 Aligned_cols=189 Identities=24% Similarity=0.318 Sum_probs=128.3
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
..+|+|++|+++++..+.-++...+... ....++|||||||+|||+||+.||++++++|..++++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----
Confidence 3589999999999999988887753321 12457999999999999999999999999999998865321
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC--------C--------CCe
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--------T--------TNV 685 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--------~--------~~V 685 (1036)
...+..++..... ..||||||||.+.+ ..-..|+..|+.+.- + .++
T Consensus 89 --~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 --AGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp --CHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred --HHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 2344555555443 46999999999842 223445555554321 1 357
Q ss_pred EEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHH
Q psy5440 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNE 763 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvne 763 (1036)
.+|+||++...|.+.|+. ||.....+..++.++..+|++.....+..+++.+. +..+|+++.| +++-..++++.
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHHHHHHH
Confidence 899999999999999999 99998899999999999999988887776666544 4679999988 56666566554
No 54
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=2.7e-17 Score=183.57 Aligned_cols=211 Identities=22% Similarity=0.276 Sum_probs=156.4
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCc
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVG 623 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~ 623 (1036)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998888654322 123567999999999999999999999999887776543221
Q ss_pred hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc----------------CCCCeEE
Q psy5440 624 PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN----------------TTTNVVV 687 (1036)
Q Consensus 624 ~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~----------------~~~~ViV 687 (1036)
...+...+... ..+.||||||||.+.+. .. +.|+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~---e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VE---ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HH---HHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12233333332 34579999999998431 11 22333332211 1234889
Q ss_pred EEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 688 LAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 688 IaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
|++||++..++++|++ ||...+.+++|+.+++.+|++..+......++.+ .+..+++.+.|.. +.+.++++.+...
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 9999999999999999 9998999999999999999998887655445544 4567888888854 7788888887767
Q ss_pred HHHhcCCcccHHHHHHHHHH
Q psy5440 768 AARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 768 A~r~~~~~It~~d~~~Aier 787 (1036)
|.......|+.+++..++..
T Consensus 209 a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 209 AQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHcCCCCcCHHHHHHHHHH
Confidence 66666677999999998877
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=4.3e-17 Score=184.56 Aligned_cols=217 Identities=21% Similarity=0.254 Sum_probs=161.9
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
..+|+|++|+++.++.+..++...+.+ ...+.++||+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 458999999999999999888764332 23467899999999999999999999999998887765432
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh------hc-Cc------CCCCeEEE
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM------DG-FN------TTTNVVVL 688 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em------Dg-~~------~~~~ViVI 688 (1036)
....+..++... ..++||||||||.+.. ...+.+..++... +. .. .-.++.+|
T Consensus 89 -~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 89 -KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred -ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 123344555443 3468999999999842 1122232222211 00 00 11347889
Q ss_pred EecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 689 AATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 689 aaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
++||++..++++|++ ||...+.+++|+.+++.+|++..+......++.+ .+..++..+.|. ++.+.++++.+...|
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~ia~~~~G~-pR~a~~~l~~~~~~a 230 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEE-GALEIARRSRGT-PRIANRLLRRVRDFA 230 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHcCCC-chHHHHHHHHHHHHH
Confidence 999999999999998 9999999999999999999999988766556544 457788888874 488888888877777
Q ss_pred HHhcCCcccHHHHHHHHHHH
Q psy5440 769 ARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aierv 788 (1036)
..+....|+.+++..+++.+
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 231 QVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 66666789999999998653
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=4.7e-17 Score=203.09 Aligned_cols=163 Identities=29% Similarity=0.450 Sum_probs=126.9
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh---------h
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL---------E 617 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~---------e 617 (1036)
|+.|++++|+.+.+++...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 5899999999999877653211 111233699999999999999999999999999999876543 2
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc-----CcC--------CCC
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG-----FNT--------TTN 684 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg-----~~~--------~~~ 684 (1036)
.|+|....++.+.|..+....| ||||||||.+.+.... ...+.||..||. |.. ..+
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 4677778888889988877666 8899999999743211 123455555542 111 247
Q ss_pred eEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhc
Q psy5440 685 VVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHL 729 (1036)
Q Consensus 685 ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L 729 (1036)
+++|+|||.++.|+++|++ ||+ .|.++.|+.+++.+|++.|+
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 8999999999999999999 995 78999999999999999886
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=4e-17 Score=202.69 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=163.0
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-++++++|.++..+.+.+++.. +...++||+||||||||++|+++|.++ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 3588899999877765544422 234579999999999999999999987 678999999
Q ss_pred hhhh--hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 613 SEFL--EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 613 se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
+.+. ..|.|..+.+++.+|+.++...|+||||||||.+.+.+... ++... ..+.|+..+ .+..+.+|++
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHH----hCCCeEEEEe
Confidence 9887 46889999999999999988889999999999998654321 11112 223333333 3567999999
Q ss_pred cCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC----CCCCChhhHHHHHhhcCCCCC-----HHH
Q psy5440 691 TNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----KTDLDRDDLSRKLAALTPGFT-----GAD 756 (1036)
Q Consensus 691 TN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----~~~l~~~~l~~~LA~~T~G~S-----gaD 756 (1036)
||..+ .+|++|.| ||. .|.++.|+.+++.+||+.+...+ ...++. ..+..++..+..|- +..
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~-~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD-EALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH-HHHHHHHHhhhcccccccCCHH
Confidence 99743 57999999 996 69999999999999999776532 122343 34455666665543 444
Q ss_pred HHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHHc
Q psy5440 757 IANVCNEAALIAARD----LHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 757 L~~LvneAal~A~r~----~~~~It~~d~~~Aiervi~ 790 (1036)
...++++|+.....+ ....|+.+|+.+++.+...
T Consensus 394 ai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 394 AIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 567777776543322 1345999999999998643
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=2.6e-16 Score=169.68 Aligned_cols=214 Identities=23% Similarity=0.293 Sum_probs=167.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
.-+|+|.+|++++|+.|.=++..-+... ...-++||+||||.|||+||..||+|+|+.+-..++.-+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 4679999999999999998888754332 23568999999999999999999999999999998876532
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc----------C------CCCe
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN----------T------TTNV 685 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~----------~------~~~V 685 (1036)
+..+-.++.....+ +||||||||++.+. .+++| .-.|+.|. . -.++
T Consensus 91 --~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 --PGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred --hhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHHHh---hhhhhheeEEEEEccCCccceEeccCCCe
Confidence 33445555554444 69999999999532 22333 33344331 1 1367
Q ss_pred EEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
-+|+||.+...|...|+. ||.....+..++.++..+|+......+..+++.+.. ..+|+++.| +++-..+|++...
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a-~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAA-LEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHH-HHHHHhccC-CcHHHHHHHHHHH
Confidence 899999999999999999 999999999999999999999998877766766554 579999988 5677777888777
Q ss_pred HHHHHhcCCcccHHHHHHHHHHH
Q psy5440 766 LIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 766 l~A~r~~~~~It~~d~~~Aierv 788 (1036)
-.|.-.+...|+.+-...|+...
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 77777778888888888888765
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=3.4e-15 Score=177.54 Aligned_cols=208 Identities=17% Similarity=0.207 Sum_probs=149.6
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
..+.+|+||+|++++++.|.+++....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 3457899999999999999998876542 234788999999999999999999999999999999987542
Q ss_pred ccCchhHHHHHHHHhhc------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 620 VGVGPSRVRDMFSMARK------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 620 vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
...++.+...+.. ..+.||+|||+|.+..+. ....++.|+..++ ..+..+|++||.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEEEeccC
Confidence 1233333333322 246799999999985321 1133455655555 234456677888
Q ss_pred CccccH-HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 694 VDVLDK-ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 694 pd~LDp-ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
+..+++ .|++ |+ ..|.|++|+..++..+++.++......++. ..+..|+..+. +|++.+++.... ...+
T Consensus 140 ~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~-eaL~~Ia~~s~----GDlR~ain~Lq~--~a~~ 209 (482)
T PRK04195 140 PYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDD-EALKEIAERSG----GDLRSAINDLQA--IAEG 209 (482)
T ss_pred ccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcC----CCHHHHHHHHHH--HhcC
Confidence 888887 5655 44 679999999999999999998766555654 44577887765 488888876544 3334
Q ss_pred CCcccHHHHHHHH
Q psy5440 773 HTTIVMKHFEQAI 785 (1036)
Q Consensus 773 ~~~It~~d~~~Ai 785 (1036)
...++.+++....
T Consensus 210 ~~~it~~~v~~~~ 222 (482)
T PRK04195 210 YGKLTLEDVKTLG 222 (482)
T ss_pred CCCCcHHHHHHhh
Confidence 5678888876544
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=3.6e-16 Score=175.54 Aligned_cols=207 Identities=27% Similarity=0.361 Sum_probs=143.1
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
.-+|+|++|+++...+-.-+-..+. .....+++||||||||||+||+.||+..+.+|..+|+..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------
Confidence 4679999999986643222212221 222356899999999999999999999999999998743
Q ss_pred CchhHHHHHHHHhhcCC----CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec--CCCc
Q psy5440 622 VGPSRVRDMFSMARKHA----PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT--NRVD 695 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~a----P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT--N~pd 695 (1036)
.+.+.+|.+|+.|+... ..||||||||.+.+.. ...||-.|+ +..|++|+|| |..-
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 45678999999996532 4799999999995322 234555553 5678888877 4445
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCC------hhhHHHHHhhcCCCCCHHHHHHHHHHHHHH--
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLD------RDDLSRKLAALTPGFTGADIANVCNEAALI-- 767 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~------~~~l~~~LA~~T~G~SgaDL~~LvneAal~-- 767 (1036)
.|.+||++ |. +++.+.+.+.++...+++..+......+. .+...+.|+..+.| |.+.++|..-+.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~ 218 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAAL 218 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHH
Confidence 89999999 65 56888999999999999885543222222 34455778877766 666666643222
Q ss_pred HHHhcCCcccHHHHHHHHHHHHc
Q psy5440 768 AARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 768 A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
+.+... .++.+++++.+.+...
T Consensus 219 ~~~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 219 SAEPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred hcCCCc-ccCHHHHHHHHhhhhh
Confidence 222222 3447777777776443
No 61
>KOG2004|consensus
Probab=99.69 E-value=1.2e-16 Score=187.77 Aligned_cols=164 Identities=27% Similarity=0.439 Sum_probs=132.3
Q ss_pred cccccChHHHHHHHHHHHH--hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh------
Q psy5440 546 KDVAGCEEAKVEIMEFVNF--LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE------ 617 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~--Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e------ 617 (1036)
+|-.|++++|+++.|++.- |+..- ..+-++|+||||+|||++||+||..+|..|+.+|...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~--------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSV--------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccC--------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 5789999999999999877 44332 2456899999999999999999999999999998654433
Q ss_pred ---hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-------------cC
Q psy5440 618 ---MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------------NT 681 (1036)
Q Consensus 618 ---~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------------~~ 681 (1036)
.|+|..+.++-+++...+.+.| +++|||||.+++.-. ++. -..||+.||-- -.
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q-----GDP-----asALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ-----GDP-----ASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC-----CCh-----HHHHHHhcChhhccchhhhccccccc
Confidence 4999999999999999999988 889999999983111 111 13444444421 11
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
-..|++|||.|..+.|+++|+. |+ ..|.++-+..++..+|.+.||-+
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhh
Confidence 2469999999999999999999 88 46999999999999999999853
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=3.6e-16 Score=192.99 Aligned_cols=223 Identities=21% Similarity=0.309 Sum_probs=158.6
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEech
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSGS 613 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~s 613 (1036)
+++.++|.++..+++.+++.. +.+.++||+||||||||++|+++|... ++.++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 366799999766666554433 124578999999999999999999864 4556666666
Q ss_pred hhh--hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 614 EFL--EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 614 e~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
.++ ..|.|..+.+++.+|..+....++||||||||.|...+... ++..+..+++..+| .+..+.||+||
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L-------~~g~i~vIgAT 322 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLL-------SSGKIRVIGST 322 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHH-------hCCCeEEEecC
Confidence 655 35788888999999999988888999999999998654321 12222233333333 35689999999
Q ss_pred CCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC----CCCChhhHHHHHhhc-----CCCCCHHHH
Q psy5440 692 NRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK----TDLDRDDLSRKLAAL-----TPGFTGADI 757 (1036)
Q Consensus 692 N~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~----~~l~~~~l~~~LA~~-----T~G~SgaDL 757 (1036)
|.++ .+|++|.| ||+ .|.++.|+.+++..||+.+...+. ..+..+.+ ...+.+ +..+.+...
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al-~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAV-RAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHhhccccCccChHHH
Confidence 9875 57999999 996 699999999999999998765432 22333332 233332 234456688
Q ss_pred HHHHHHHHHHHH----HhcCCcccHHHHHHHHHHHHcC
Q psy5440 758 ANVCNEAALIAA----RDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 758 ~~LvneAal~A~----r~~~~~It~~d~~~Aiervi~g 791 (1036)
..++++|+.... ...+..|+.+|+.+++.+..+-
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 899999875432 2224468999999998886543
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=6e-15 Score=172.52 Aligned_cols=210 Identities=19% Similarity=0.209 Sum_probs=149.3
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-e
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-S 611 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s 611 (1036)
....+|+||+|++++...|...+.. .+++..+||+||||||||++|+++|+.+++.- ..+ +
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3457899999999999988777653 23466789999999999999999999987631 000 1
Q ss_pred chhh--------hhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 612 GSEF--------LEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 612 ~se~--------~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
|.++ .+. ....+...+|++.+.+.. ....|+||||+|.+.. ...|.||..|+
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------~A~NALLKtLE 146 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------QSFNALLKTLE 146 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------HHHHHHHHHhh
Confidence 1111 110 011234456766655542 2346999999999832 46788888887
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADI 757 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL 757 (1036)
. ...++++|.+|+.+..|.+++++ |+ ..+.|.+++.++..+.++..+...+..++.+ .+..|++.+.| +.+|.
T Consensus 147 E--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d~RdA 219 (484)
T PRK14956 147 E--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-SVRDM 219 (484)
T ss_pred c--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-hHHHH
Confidence 3 55789999999999999999999 87 4588999999888899988887655445544 45778888877 56788
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 758 ANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 758 ~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
.+++..+... ....|+.+++.+.+
T Consensus 220 L~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 7887765432 23358887775544
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=8.3e-15 Score=173.03 Aligned_cols=204 Identities=19% Similarity=0.258 Sum_probs=144.2
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC---------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV--------------- 605 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv--------------- 605 (1036)
.+.+|+||+|+++++..|...+.. .++|.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 356899999999998888765543 235677999999999999999999998865
Q ss_pred ---------CeEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 606 ---------PFITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 606 ---------pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. ..++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHH
Confidence 234443321 1233456666655542 2346999999999842 345777
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. .+..+++|++|+.+..++++|++ |+ ..+.+.+++.++...+++..+......++.+. +..|++.+.|
T Consensus 138 Lk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ea-l~~Ia~~s~G- 210 (472)
T PRK14962 138 LKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREA-LSFIAKRASG- 210 (472)
T ss_pred HHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhCC-
Confidence 777774 34578888888888899999999 77 47999999999999999988865554455444 4678876654
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aie 786 (1036)
+.+++.+.+..+... . ...|+.+++.+++.
T Consensus 211 dlR~aln~Le~l~~~---~-~~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---S-EGKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---c-CCCCCHHHHHHHHc
Confidence 444555555443322 1 23499999887764
No 65
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=3.8e-15 Score=186.90 Aligned_cols=218 Identities=21% Similarity=0.277 Sum_probs=152.6
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-++++++|.++. |..++..|... ...+++|+||||||||++|+.+|... +..++.++.
T Consensus 184 ~~ld~~iGr~~e---i~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDE---IRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHH---HHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 458899999985 44555544222 22478999999999999999999875 245788888
Q ss_pred hhhhh--hhccCchhHHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 613 SEFLE--MFVGVGPSRVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 613 se~~e--~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
+.+.. .+.|..+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+..+ .++.+.+|+
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l----~~G~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPAL----ARGELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHh----hCCCeEEEE
Confidence 77663 5788888999999999865 468999999999998654321 1111 223333333 467899999
Q ss_pred ecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC----CCCChhhHHHHHhhcCCCC-----CHH
Q psy5440 690 ATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK----TDLDRDDLSRKLAALTPGF-----TGA 755 (1036)
Q Consensus 690 aTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~----~~l~~~~l~~~LA~~T~G~-----Sga 755 (1036)
||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+.+. ..++ +..+..++.++.+| -+.
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~-d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLIL-DEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeC-HHHHHHHHHHcccccccccCcc
Confidence 999754 48999999 995 799999999999999876665432 2233 44446677777665 345
Q ss_pred HHHHHHHHHHHHHHH-hcCCcccHHHHHHHHH
Q psy5440 756 DIANVCNEAALIAAR-DLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 756 DL~~LvneAal~A~r-~~~~~It~~d~~~Aie 786 (1036)
....++++|+..... ....++..+++++.+.
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~~ 429 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRIA 429 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 566788887655443 3344555555554443
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.63 E-value=9.8e-15 Score=166.85 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=153.5
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CCeEEEech
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VPFITVSGS 613 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~s 613 (1036)
...++++|.++..++|..++..... ...+.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 4456899999988888777765321 13356799999999999999999997652 678899986
Q ss_pred hhhh----------hhc--cC-------c-hhHHHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 614 EFLE----------MFV--GV-------G-PSRVRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 614 e~~e----------~~v--G~-------~-~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
.... ... +. . ......++.... ...+.||+|||+|.+... ....+.+|
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhH
Confidence 5332 111 11 1 122344555443 345789999999999621 01345566
Q ss_pred HHHhhcC-cCCCCeEEEEecCCCc---cccHHhhCCCCcc-eEEEecCCChhhHHHHHHHhcC-CCCC-CCChhh--HHH
Q psy5440 673 LVEMDGF-NTTTNVVVLAATNRVD---VLDKALLRPGRFD-RQIFVPAPDIKGRASIFKVHLK-PLKT-DLDRDD--LSR 743 (1036)
Q Consensus 673 L~emDg~-~~~~~ViVIaaTN~pd---~LDpALlRpGRFd-r~I~i~~Pd~eeR~~IL~~~L~-~l~~-~l~~~~--l~~ 743 (1036)
+...+.. ..+.++.+|+++|.++ .+++.+.+ ||. ..|.+++++.++..+|++.++. .... .++.+. .+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 5442211 2236789999999876 58888887 674 6799999999999999999885 2221 233332 223
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 744 KLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 744 ~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
.++..+.|. .+.+.++|+.|+..|..++...|+.+|+..|++.+
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 344455563 46667789999988988888899999999999876
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.63 E-value=5.7e-16 Score=184.67 Aligned_cols=110 Identities=42% Similarity=0.553 Sum_probs=94.4
Q ss_pred hhhhHHhHHH-HHHHHHHHHHHhcCCCCCCCCCCCCCccccccEEecCCCCccceeccccchHHHHHHHHHHHhcCCchh
Q psy5440 89 ELSSLSGILP-TLLIIGRSAEMMGGRPGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQ 167 (1036)
Q Consensus 89 ~~~~l~~llP-~llii~~~~~~~~~~~~~gggg~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~ 167 (1036)
|.+++.+++| ++++.++|+++.+++.++ ||..+.+|||+++++.++.++++|+||+|++++|++|+++++||++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~ 79 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG--GGRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSK 79 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHH
Confidence 3456666666 666666677777666553 3445789999999999889999999999999999999999999999999
Q ss_pred HHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 168 YIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 168 ~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
|.++|.++|+|+||||| |||++|+|+|++++..
T Consensus 80 ~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 80 FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999 9999999999998744
No 68
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=5e-15 Score=177.66 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=146.8
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
.+|++++|++++++.+...+ . ...+.++||+||||||||++|++++.++ +.||+.++|
T Consensus 62 ~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~ 129 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDA 129 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcc
Confidence 67999999999988887432 1 2335689999999999999999998643 368999998
Q ss_pred hhh-------hhhhccCch----------------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHH
Q psy5440 613 SEF-------LEMFVGVGP----------------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTL 669 (1036)
Q Consensus 613 se~-------~e~~vG~~~----------------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~L 669 (1036)
+.. .+...+... ..-..++.. ....+|||||||.+.. ...
T Consensus 130 ~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~--------------~~q 192 (531)
T TIGR02902 130 TTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHP--------------VQM 192 (531)
T ss_pred ccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCH--------------HHH
Confidence 631 111111000 000112222 2346999999999842 233
Q ss_pred HHHHHHhhcC--------------------------cCCCCeEEE-EecCCCccccHHhhCCCCcceEEEecCCChhhHH
Q psy5440 670 NQLLVEMDGF--------------------------NTTTNVVVL-AATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRA 722 (1036)
Q Consensus 670 nqLL~emDg~--------------------------~~~~~ViVI-aaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~ 722 (1036)
+.||..|+.- ..+.++.+| +|||.|+.|+|++++ |+. .|.+++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 4444433210 012234555 556789999999999 874 6889999999999
Q ss_pred HHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 723 SIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 723 ~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aier 787 (1036)
.|++..++.....++.+.+ +.++..+. +++++.++++.|+..|..+++..|+.+|++.++..
T Consensus 270 ~Il~~~a~k~~i~is~~al-~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHAL-ELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHH-HHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999999876655655544 56666553 78999999999998888887888999999998763
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.2e-16 Score=173.50 Aligned_cols=70 Identities=30% Similarity=0.506 Sum_probs=65.9
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
++++.|||+||+|+++.++||+|+|++ |+||++|.++|+.+||||||||| ||||||||+|++++ ..|+|.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrv 216 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRV 216 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceEEEe
Confidence 678999999999999999999999999 99999999999999999999999 99999999999999 446654
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=1.1e-14 Score=171.78 Aligned_cols=222 Identities=19% Similarity=0.292 Sum_probs=147.7
Q ss_pred CCCccccccc-cChH--HHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEe
Q psy5440 540 DIGVRFKDVA-GCEE--AKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVS 611 (1036)
Q Consensus 540 ~~~v~F~DV~-G~ee--aK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is 611 (1036)
.+..+|++.+ |... +...+.++. .+|. ....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~---~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVA---ENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHH---hCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899955 4332 333333332 2221 223569999999999999999999987 56799999
Q ss_pred chhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 612 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
+.+|...+..........-|..... .+.+|+|||||.+..++ . +...|+..++........+||+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~---------~---~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE---------R---TQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH---------H---HHHHHHHHHHHHHHCCCcEEEECC
Confidence 9998766543322111122322222 46799999999985321 1 112222222222233345666666
Q ss_pred CCCcc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 692 NRVDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 692 N~pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
..|.. +++.|++ ||. ..+.+.+||.++|.+|++..+......++. +.++.||....| +.++|..+++....
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~-e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPD-EVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 66654 7789998 886 578999999999999999998765444554 456788888765 67888888887766
Q ss_pred HHHHhcCCcccHHHHHHHHHHHH
Q psy5440 767 IAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 767 ~A~r~~~~~It~~d~~~Aiervi 789 (1036)
.+... ...||.+.+++++..++
T Consensus 329 ~~~~~-~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 329 YASLT-GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHhh-CCCCCHHHHHHHHHHhh
Confidence 65544 46799999999998764
No 71
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=1.2e-14 Score=169.17 Aligned_cols=242 Identities=19% Similarity=0.288 Sum_probs=156.5
Q ss_pred CCccccc-cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechh
Q psy5440 541 IGVRFKD-VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSE 614 (1036)
Q Consensus 541 ~~v~F~D-V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se 614 (1036)
+..+|++ ++|.+.. ...........+| ......++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4678999 5564432 1222222222222 1234568999999999999999999977 57899999998
Q ss_pred hhhhhccCch-hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 615 FLEMFVGVGP-SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 615 ~~e~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
|...+..... ..+..+.+..+ .+.+|+|||||.+..+. .....+-.++.. .......+||+++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~---~~~~~~~iiits~~~ 242 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNA---LHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHH---HHHCCCCEEEecCCC
Confidence 8765432211 11222222222 25799999999985321 111222222222 222334566666666
Q ss_pred Ccc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 694 VDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 694 pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
|.. +++.|++ ||. ..+.+++||.++|..|++..+......++ ++.+..||....+ +.++|..+++.....|
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~-~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP-DEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 654 5688888 886 47899999999999999999887655555 4556788877765 6789999998876665
Q ss_pred HHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhh
Q psy5440 769 ARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWF 820 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~ 820 (1036)
.. ....||.+.+++++...+.. .++.+..++.-++|+.++
T Consensus 319 ~~-~~~~it~~~~~~~L~~~~~~-----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 319 SL-TGKPITLELAKEALKDLLRA-----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HH-hCCCCCHHHHHHHHHHhccc-----------cCCCCCHHHHHHHHHHHc
Confidence 54 35679999999988764322 123456677777777655
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.4e-15 Score=176.61 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=141.7
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC------------e
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP------------F 607 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------------f 607 (1036)
....+|+||+|++++++.|.+.+.. .+++..+||+||+|||||++|+++|+.+++. .
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3457899999999999998887754 2456778999999999999999999998761 1
Q ss_pred EEE-ech--------hhhhhh--ccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 608 ITV-SGS--------EFLEMF--VGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 608 i~I-s~s--------e~~e~~--vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
-.+ +|. ++++.- ...+...+|++.+.+.. ....|+||||+|.|.. ...|.|
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~AaNAL 144 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------HAFNAM 144 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------HHHHHH
Confidence 111 111 111110 01234557777766542 2347999999999832 457888
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+.++.......+.+ .+..|++.+.|
T Consensus 145 LKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~G- 217 (700)
T PRK12323 145 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQG- 217 (700)
T ss_pred HHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888873 56788999999999999999999 87 6689999999999999888876544334433 34667877776
Q ss_pred CHHHHHHHHHHHHH
Q psy5440 753 TGADIANVCNEAAL 766 (1036)
Q Consensus 753 SgaDL~~LvneAal 766 (1036)
+.++..+++..+..
T Consensus 218 s~RdALsLLdQaia 231 (700)
T PRK12323 218 SMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHHHH
Confidence 67888888876553
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=3.5e-14 Score=165.86 Aligned_cols=201 Identities=27% Similarity=0.376 Sum_probs=144.5
Q ss_pred CccccccccChHHHHH---HHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAKVE---IMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~e---L~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
..+|+|++|++++... |.+++.. ..+.++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 3579999999998766 6655532 123479999999999999999999999999999987642
Q ss_pred hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC--
Q psy5440 619 FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN-- 692 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN-- 692 (1036)
+...++.+++.+.. ....||||||+|.+.. ...+.|+..++ ...+++|++|+
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le----~~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVE----DGTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhh----cCcEEEEEeCCCC
Confidence 23456777776642 3568999999998842 22345555554 24567776653
Q ss_pred CCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCC---CCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 693 RVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKT---DLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 693 ~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~---~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
....++++|++ |+ ..+.+.+++.++...+++..+..... .++ +..++.+++.+.| ..+.+.+++..++..
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~~~-- 203 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAALG-- 203 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHc--
Confidence 34579999999 88 67999999999999999988754221 343 3445677877754 456666666554432
Q ss_pred HhcCCcccHHHHHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aiervi 789 (1036)
...|+.+++.+++....
T Consensus 204 ---~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 ---VDSITLELLEEALQKRA 220 (413)
T ss_pred ---cCCCCHHHHHHHHhhhh
Confidence 55799999999887644
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.1e-14 Score=163.57 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=145.9
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE--------Eec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT--------VSG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~--------Is~ 612 (1036)
.+.+|+||+|++++++.|...+.. .+.|..+||+||||||||++|+++|+++++.... .+|
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 457899999999999988776643 2456778999999999999999999988653110 011
Q ss_pred hhh--------hhhh--ccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 SEF--------LEMF--VGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 se~--------~e~~--vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
.++ .+.- .......++.+.+.+.. ....|++|||+|.+.. ...|.||..++.
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------~a~naLLk~lEe 145 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------HSFNALLKTLEE 145 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------------HHHHHHHHHHhc
Confidence 111 1100 01223456666665432 1236999999998831 345677777774
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+.+|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++..+......++.+ .+..++..+.| +.+++.
T Consensus 146 --~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 146 --PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred --CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 44567778888888889999988 77 5789999999999999998887655445444 44678877766 667777
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++..++.. +...|+.+++.+++
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHH
Confidence 777665432 35678888877665
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=4.4e-14 Score=163.23 Aligned_cols=225 Identities=19% Similarity=0.242 Sum_probs=153.9
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechhhhh
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSEFLE 617 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se~~e 617 (1036)
...+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|.....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 4567799999888887777644211 1235679999999999999999999876 57899999864321
Q ss_pred ----------hhcc-------Cchh-HHHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 618 ----------MFVG-------VGPS-RVRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 618 ----------~~vG-------~~~~-~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
...+ .... .+..+.+... ...+.||+|||+|.+..+. ..+.+..|+..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 1112 1111 1222233333 2456899999999996211 12456667666554
Q ss_pred CcCCCCeEEEEecCCCc---cccHHhhCCCCcc-eEEEecCCChhhHHHHHHHhcCC-CCCCCChhhHHHHHhhcCCCC-
Q psy5440 679 FNTTTNVVVLAATNRVD---VLDKALLRPGRFD-RQIFVPAPDIKGRASIFKVHLKP-LKTDLDRDDLSRKLAALTPGF- 752 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd---~LDpALlRpGRFd-r~I~i~~Pd~eeR~~IL~~~L~~-l~~~l~~~~l~~~LA~~T~G~- 752 (1036)
.. ..++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++.. .....-.+..++.+++.+.+.
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 32 23788888888754 57788776 553 57899999999999999988752 112222344456677666332
Q ss_pred -CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 753 -TGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 753 -SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
..+.+.++|..|+..|..++...|+.+|+..|++.+
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 235566888899888888888999999999999986
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.2e-14 Score=175.39 Aligned_cols=195 Identities=18% Similarity=0.198 Sum_probs=141.0
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-e
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-S 611 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s 611 (1036)
....+|+||+|++++++.|.+.+.. .+++..+||+||+|||||++|+++|+.+++.- -.+ +
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 3456899999999999988877642 34577789999999999999999999887621 000 1
Q ss_pred chhh--------hhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 612 GSEF--------LEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 612 ~se~--------~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
|..+ ++. ....+...+|++++.+.. ....|+||||+|.|.. ...|.||..|+
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtLE 144 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTLE 144 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHHH
Confidence 1111 111 011233457777776542 2346999999999832 34677888777
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADI 757 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL 757 (1036)
. ...++++|.+||.+..|.+.|++ |+ .++.|..++.++..++|+..+...+..++.+ .+..|++.+.| +.++.
T Consensus 145 E--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-smRdA 217 (830)
T PRK07003 145 E--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SMRDA 217 (830)
T ss_pred h--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 3 45689999999999999999999 87 6799999999999999998887655445544 44678888877 56777
Q ss_pred HHHHHHHHH
Q psy5440 758 ANVCNEAAL 766 (1036)
Q Consensus 758 ~~LvneAal 766 (1036)
.+++..+..
T Consensus 218 LsLLdQAia 226 (830)
T PRK07003 218 LSLTDQAIA 226 (830)
T ss_pred HHHHHHHHH
Confidence 787776553
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.2e-14 Score=168.94 Aligned_cols=213 Identities=18% Similarity=0.242 Sum_probs=153.5
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE-----------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI----------- 608 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi----------- 608 (1036)
...-+|+|++|++++...|...+.. .+++.++||+||||||||++|+++|+.+++.-.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 4457899999999999888765533 355778999999999999999999999876311
Q ss_pred E-Eechhhhh--------hh--ccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 609 T-VSGSEFLE--------MF--VGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 609 ~-Is~se~~e--------~~--vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
. -+|..+.+ .- ...+...++++++.+... ...|++|||+|.+.. ..+|.||
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLL 149 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALL 149 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHHHH
Confidence 0 11222211 10 112446678888777532 246999999998831 4567788
Q ss_pred HHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 674 VEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 674 ~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
..|+. .+..+++|.+|+.++.+.+++++ |+ ..+.+.+++.++...+++..+...+..++.+ .+..|++.+.| +
T Consensus 150 k~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~G-s 222 (507)
T PRK06645 150 KTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSEG-S 222 (507)
T ss_pred HHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 77773 55678888888889999999998 77 5688999999999999999998665445544 44678888776 7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 754 GADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 754 gaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
.+++.+++..++..+.. ....|+.+++++.+
T Consensus 223 lR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 223 ARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 78888888887655431 12357877776544
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3e-14 Score=170.62 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=147.6
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
...+|+||+|++.+++.|...+.. .+++..+||+||||||||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 346899999999999988877752 3457788999999999999999999998762
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++++ ..+...+|++...+.. ....|+||||+|.|.. ...|.|
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHH
Confidence 22222221 1234557777665532 2346999999998832 356778
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ...++.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+...+..++.+. +..|++.+.|
T Consensus 139 LKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eA-L~~IA~~S~G- 211 (702)
T PRK14960 139 LKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDA-IWQIAESAQG- 211 (702)
T ss_pred HHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 877773 45677888888888889899887 77 56899999999999999988876554555554 4678877766
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++.+++..+... +...|+.+++...
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 677888887765432 3556888777654
No 79
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.58 E-value=1.5e-14 Score=177.20 Aligned_cols=182 Identities=25% Similarity=0.390 Sum_probs=132.4
Q ss_pred CccccchhHHHHHHHhcCCeeEEEEEcCeEEEEEEcCCCCCCCCceEEEEcCChhhHHHHHHHHHHhcCCCCCCCcccee
Q psy5440 5 NYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPANYLPVIY 84 (1036)
Q Consensus 5 ~~~~IsYs~F~~~ll~~g~V~~V~i~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~ 84 (1036)
..+.++|+.|.+.+ .++.+.++.+. ...++....+ +..+.+..+...+.+...+...++.+.... . .
T Consensus 28 ~~~~~~~~~~~~~~-~~~~v~Ev~~~-~~tIK~~~~e-----~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~-----~-~ 94 (644)
T PRK10733 28 NGRKVDYSTFLQEV-NQDQVREARIN-GREINVTKKD-----SNRYTTYIPVNDPKLLDNLLTKNVKVVGEP-----P-E 94 (644)
T ss_pred CcccCCHHHHHHHH-HcCCeEEEEEe-CCEEEEEEcC-----CceEEEeCCCCCHHHHHHHHHcCCeEEecC-----c-c
Confidence 34579999999654 88888888764 3445554332 222322222233445555554444432221 1 1
Q ss_pred ecchhhhhHHhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccEEecCCCCccceeccccchHHHHHHHHHHHhcCC
Q psy5440 85 KTEIELSSLSGILPTLLIIGRSAEMMGGRPGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKN 164 (1036)
Q Consensus 85 ~~~~~~~~l~~llP~llii~~~~~~~~~~~~~gggg~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~~Lk~ 164 (1036)
...++..++..++|+++++++|+++++++++| +++++++|++++++...+....++|+||+|+++++++|.++++|+++
T Consensus 95 ~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~ 173 (644)
T PRK10733 95 EPSLLASIFISWFPMLLLIGVWIFFMRQMQGG-GGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLRE 173 (644)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCceeEEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhC
Confidence 12223344555678888888888888877654 33457889999999888877889999999999999999999999999
Q ss_pred chhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 165 PQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 165 P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
|+.|..+|+++|+||||+|| |||++|+++|++++..
T Consensus 174 ~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999 9999999999999843
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.4e-14 Score=168.49 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=147.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP------------- 606 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------------- 606 (1036)
....+|+||+|++++++.|...+.. .++|..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3456899999999999999887754 2456778999999999999999999988763
Q ss_pred -----------eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHH
Q psy5440 607 -----------FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQ 671 (1036)
Q Consensus 607 -----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Lnq 671 (1036)
++.++++. ..+...+|++.+.+.. ....|++|||+|.+.. ...|.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~na 138 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNA 138 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHH
Confidence 33333221 2234457777665542 2236999999999842 34678
Q ss_pred HHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC
Q psy5440 672 LLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG 751 (1036)
Q Consensus 672 LL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G 751 (1036)
||..|+. .+.++++|.+|+.+..+.+.+++ |+ ..+.+.+++.++....++..+...+..++.+. +..+++.+.|
T Consensus 139 LLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~a-l~~ia~~s~G 212 (509)
T PRK14958 139 LLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAA-LDLLARAANG 212 (509)
T ss_pred HHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC
Confidence 8888874 45678888888889999989988 76 55788888888888888888776554455443 4677777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 752 FTGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 752 ~SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++.+++..+... +...|+.+++.+.
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 778888888776432 2456777776654
No 81
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-14 Score=169.02 Aligned_cols=165 Identities=29% Similarity=0.423 Sum_probs=131.7
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh--------
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-------- 617 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-------- 617 (1036)
+|..|++++|+++.|++...+.... + + ..-+||+||||+|||+|++.||..+|.+|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~---~--k-GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK---L--K-GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc---C--C-CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4689999999999998877433222 1 1 134789999999999999999999999999999764433
Q ss_pred -hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-------------cCCC
Q psy5440 618 -MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------------NTTT 683 (1036)
Q Consensus 618 -~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------------~~~~ 683 (1036)
.|+|..+.++-+-...|....| +++|||||.++..-. ++ --..||+-+|-- -.-+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GD-----PASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CC-----hHHHHHhhcCHhhcCchhhccccCccchh
Confidence 4999999999999999999988 889999999974321 11 123455555421 1124
Q ss_pred CeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 684 NVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 684 ~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
+|++|||+|..+.++.+|+. |+ ..|.++-++.++..+|.+.||=
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 79999999999999999999 88 4699999999999999999985
No 82
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=4.2e-14 Score=166.25 Aligned_cols=224 Identities=14% Similarity=0.210 Sum_probs=146.8
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se 614 (1036)
.+..+|++.+--+.-............+|.. ..+++||||||+|||+|++|+++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4568999988333333222222233333321 3469999999999999999999976 46789999999
Q ss_pred hhhhhccCch-hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 615 FLEMFVGVGP-SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 615 ~~e~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
|...+..... ..+.. |.......+.+|+|||++.+..+. ... ..|+..++.+......+||++.+.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q---~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQ---TELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHH---HHHHHHHHHHHHcCCeEEEECCCC
Confidence 8765532211 12222 333333457899999999885321 111 112222222223344566666666
Q ss_pred Ccc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 694 VDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 694 pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
|.. +++.|.+ ||. ..+.+.+||.+.|.+|++..+......++ ++.+..||....| +.++|..+++.....+
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~-~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP-EEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 664 5667887 664 57789999999999999999875444454 4456788888775 6788988888765555
Q ss_pred HHhcCCcccHHHHHHHHHHHH
Q psy5440 769 ARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi 789 (1036)
... ...||.+.+.+++..++
T Consensus 314 ~~~-~~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 314 ETT-GEEVDLKEAILLLKDFI 333 (440)
T ss_pred HHh-CCCCCHHHHHHHHHHHh
Confidence 444 56799999999998764
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.7e-14 Score=171.38 Aligned_cols=193 Identities=18% Similarity=0.197 Sum_probs=138.9
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s~ 612 (1036)
...+|+||+|++.+++.|.+++.. .+++..+||+||||||||++|+++|+.+++.- ..+ +|
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 457899999999999998877643 24577789999999999999999999987641 111 11
Q ss_pred hhhhhh-------hc---cCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 SEFLEM-------FV---GVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 se~~e~-------~v---G~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
-.+.+. +- ..+...+|.+.+.+.. ....|+||||+|.|. ....|.||..|+.
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtLEE 145 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTLEE 145 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHHhc
Confidence 111110 00 1123456766655532 233699999999983 2567888888873
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+.++++|.+|+.+..|.+.|++ |+ .++.|.+++.++..+.|+..+......++. ..+..|+..+.| +.+++.
T Consensus 146 --PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ed-eAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 146 --PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEA-EALTLLAKAANG-SMRDAL 218 (944)
T ss_pred --cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHH
Confidence 55678888889989999999998 77 669999999999999998887654433433 345678888876 568888
Q ss_pred HHHHHHH
Q psy5440 759 NVCNEAA 765 (1036)
Q Consensus 759 ~LvneAa 765 (1036)
++|..+.
T Consensus 219 nLLdQal 225 (944)
T PRK14949 219 SLTDQAI 225 (944)
T ss_pred HHHHHHH
Confidence 8887655
No 84
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=3.3e-14 Score=165.28 Aligned_cols=190 Identities=25% Similarity=0.333 Sum_probs=125.2
Q ss_pred ccccCCCCccccc-cccChHHHHHHHHHHHH----hcCchhHhhhcCC-CCceeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 535 LINSSDIGVRFKD-VAGCEEAKVEIMEFVNF----LKNPQQYIDLGAK-IPKGAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 535 ~~~~~~~~v~F~D-V~G~eeaK~eL~eiV~~----Lk~p~~~~~lG~~-~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
+..|.++.-.+++ |+|++++|+.|...+.. +.+...-.. ... ...++||+||||||||++|+++|..+++||+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~ 137 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFA 137 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCce
Confidence 3445555566764 89999999999765532 111100000 111 2467999999999999999999999999999
Q ss_pred EEechhhhh-hhccCchhH-HHHHHHHh----hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--
Q psy5440 609 TVSGSEFLE-MFVGVGPSR-VRDMFSMA----RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-- 680 (1036)
Q Consensus 609 ~Is~se~~e-~~vG~~~~~-vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-- 680 (1036)
.++++.+.+ .|+|..... +..++..+ ....++||||||||.+.+++.......+...+.+.+.||..|++-.
T Consensus 138 ~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~ 217 (412)
T PRK05342 138 IADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 217 (412)
T ss_pred ecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEE
Confidence 999998765 577765443 34444332 2346789999999999876432211112222457788888887531
Q ss_pred ---------CCCCeEEEEecCCCc----------------------------------------------------cccH
Q psy5440 681 ---------TTTNVVVLAATNRVD----------------------------------------------------VLDK 699 (1036)
Q Consensus 681 ---------~~~~ViVIaaTN~pd----------------------------------------------------~LDp 699 (1036)
...+.++|.|+|-.. -+.|
T Consensus 218 v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~P 297 (412)
T PRK05342 218 VPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIP 297 (412)
T ss_pred eCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhH
Confidence 112356666666400 0234
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHH
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
+|+ ||+|..+.+.+.+.++..+|+..
T Consensus 298 Efl--gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 298 EFI--GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred HHh--CCCCeeeecCCCCHHHHHHHHHH
Confidence 444 49999999999999999999973
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.8e-14 Score=170.23 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=149.8
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE-------EE-e
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI-------TV-S 611 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi-------~I-s 611 (1036)
....+|+||+|++.+++.|.+.+.. .+++.++||+||+|||||++|+++|+.++++-. .+ +
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 3457899999999999998887653 356788999999999999999999998866311 10 0
Q ss_pred ch--------hhhhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 612 GS--------EFLEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 612 ~s--------e~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
|. ++++. ....+...+|++++.+.. ....||||||+|.+. ....|.||..|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtLE 144 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLE 144 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHHH
Confidence 11 11110 112234567888776532 234699999999873 135678888887
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADI 757 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL 757 (1036)
. ...++.+|.+||.+..+.+.+++ |+ ..+.|..++.++...+|+..+...+..++.+. +..|++.+.| +.+++
T Consensus 145 E--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eA-L~~Ia~~A~G-slRdA 217 (709)
T PRK08691 145 E--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPA-LQLLGRAAAG-SMRDA 217 (709)
T ss_pred h--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHhCC-CHHHH
Confidence 4 45678888888999999999987 77 55888899999999999998886665555443 4678877765 67888
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 758 ANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 758 ~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
.+++..+... +...|+.+++...+
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888776543 24457777666553
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.9e-14 Score=164.58 Aligned_cols=201 Identities=17% Similarity=0.234 Sum_probs=150.2
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC----------------
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV---------------- 605 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv---------------- 605 (1036)
..+|+||+|++.+++.|.+.+.. .++|.++||+||||||||++|+.+|..+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 46899999999999888765543 356788999999999999999999997654
Q ss_pred --------CeEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 606 --------PFITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 606 --------pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
.++.+++++ ..+...+|.+.+.+... ...|++|||+|.+.. ..+|.||
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaLL 137 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNALL 137 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHHH
Confidence 223333321 12345678887776432 246999999998831 4578888
Q ss_pred HHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 674 VEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 674 ~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
..|+. .+..+++|.+|+.++.|.+.+++ |+ ..+.+.+++.++..+.++..+...+..++.+. +..|++.+.| +
T Consensus 138 K~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eA-L~lIa~~s~G-s 210 (491)
T PRK14964 138 KTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEES-LKLIAENSSG-S 210 (491)
T ss_pred HHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-C
Confidence 88884 45678888888888999999998 77 55899999999999999988876655555554 4678888765 7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 754 GADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 754 gaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
.+++.+++..+...+ ...|+.+++.+.
T Consensus 211 lR~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 211 MRNALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 788888887766543 246888887664
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=1.1e-13 Score=147.66 Aligned_cols=205 Identities=13% Similarity=0.150 Sum_probs=135.8
Q ss_pred Ccccccccc--ChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 542 GVRFKDVAG--CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 542 ~v~F~DV~G--~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
..+|++.+. ...+.+.+.+++. ...+.+++|+||||||||++|++++.++ +.++++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 467888873 4445555555432 1336689999999999999999999876 5789999998876
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
... .+++..... +.+|+|||+|.+... ....+.+..++..+. .....+|+.++..+..
T Consensus 79 ~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~---~~~~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVR---EAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhccc--CCEEEEeChhhhcCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChHH
Confidence 432 233433322 359999999988421 111233344443332 2223444444444443
Q ss_pred cc---HHhhCCCCc--ceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 697 LD---KALLRPGRF--DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 697 LD---pALlRpGRF--dr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
++ +.|.+ |+ ..+|.+++|+.+++..+++.++......++.+. ++.|+...+ -+.+++.++++++...+..
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~~-gn~r~L~~~l~~~~~~~~~- 211 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASLA- 211 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcc-CCHHHHHHHHHHHHHHHHH-
Confidence 32 77777 55 478999999999999999987765444455444 477887654 4789999999987655544
Q ss_pred cCCcccHHHHHHHH
Q psy5440 772 LHTTIVMKHFEQAI 785 (1036)
Q Consensus 772 ~~~~It~~d~~~Ai 785 (1036)
....|+.+.+.+++
T Consensus 212 ~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AKRKITIPFVKEVL 225 (226)
T ss_pred hCCCCCHHHHHHHh
Confidence 44579988877664
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.5e-14 Score=169.09 Aligned_cols=209 Identities=17% Similarity=0.241 Sum_probs=146.9
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE-------EE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI-------TV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi-------~I-s~ 612 (1036)
...+|+||+|++.+++.|.+.+.. .+++..+||+||+|||||++|+++|+.+++... .+ +|
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 347899999999999988877654 245677899999999999999999998876311 10 01
Q ss_pred h--------hhhhhhc--cCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 S--------EFLEMFV--GVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 s--------e~~e~~v--G~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
. ++.+.-. ..+...+|++.+.+.. ....|+||||+|.+. ....|.||..|+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NALLKtLE- 144 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE- 144 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHHHHHHH-
Confidence 1 1111000 1123456777665432 234699999999983 246788888887
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
..+.++++|.+|+.+..|.+.+++ |+ ..+.|..++.++....|+..+.......+. ..+..|+..+.| +.+++.
T Consensus 145 -EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~-~aL~~Ia~~s~G-s~R~Al 218 (647)
T PRK07994 145 -EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEP-RALQLLARAADG-SMRDAL 218 (647)
T ss_pred -cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHH
Confidence 356688888889999999999999 86 789999999999999999887654433443 344668877776 667888
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++..|... +...|+.+++...+
T Consensus 219 ~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 219 SLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888765422 23457776665544
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.56 E-value=1.7e-13 Score=154.51 Aligned_cols=209 Identities=18% Similarity=0.211 Sum_probs=137.0
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~se 614 (1036)
....+|++++|.+++++.|..++.. ....++||+||||||||++|+++|+++. .+++.+++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3456799999999999888776642 1123699999999999999999999873 4678899887
Q ss_pred hhhhh-------------ccC-------chhHHHHHHHHhhc-----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHH
Q psy5440 615 FLEMF-------------VGV-------GPSRVRDMFSMARK-----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTL 669 (1036)
Q Consensus 615 ~~e~~-------------vG~-------~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~L 669 (1036)
+.... .+. ....++.+...... ..+.+|+|||+|.+.. . ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~---~~ 142 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------D---AQ 142 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------H---HH
Confidence 64321 000 11223333323222 2246999999998732 1 22
Q ss_pred HHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcC
Q psy5440 670 NQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALT 749 (1036)
Q Consensus 670 nqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T 749 (1036)
+.|+..++.. .....+|.+|+.+..+.+.|.+ |+ ..+.+.+|+.+++..+++..++.....++.+ .++.|+..+
T Consensus 143 ~~L~~~le~~--~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~~ 216 (337)
T PRK12402 143 QALRRIMEQY--SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYYA 216 (337)
T ss_pred HHHHHHHHhc--cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 3444444432 2234555566667777788887 65 5689999999999999999887665455544 446777776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy5440 750 PGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 750 ~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aie 786 (1036)
+| |++.+++.....+ .....||.+++++++.
T Consensus 217 ~g----dlr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 217 GG----DLRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred CC----CHHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 43 5555555544333 2234799988877554
No 90
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=4.6e-14 Score=177.68 Aligned_cols=164 Identities=23% Similarity=0.371 Sum_probs=125.5
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-++++|+|.++. ++.++.-|... ...+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 175 ~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 357889999975 55555544222 22468999999999999999999987 788999988
Q ss_pred hhhh--hhhccCchhHHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 613 SEFL--EMFVGVGPSRVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 613 se~~--e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
+.++ .+|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+... ++ ....+.+.. .+ .++.+.+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~-~d~~~~lkp---~l----~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GA-MDAGNMLKP---AL----ARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cc-hhHHHHhcc---hh----hcCCCeEEE
Confidence 8876 35788889999999998644 568999999999997654321 11 122223322 22 467899999
Q ss_pred ecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC
Q psy5440 690 ATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 690 aTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
||+..+ .+|+||.| ||+ .|.++.|+.+++..||+.+.+.
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999877 48999999 997 5889999999999999877654
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=7.6e-14 Score=175.57 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=146.7
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-+++.|+|.++..+.+.+++. .+.+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458889999987777766543 2345689999999999999999999976 478999999
Q ss_pred hhhh--hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 613 SEFL--EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 613 se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
+.++ ..|.|..+.+++.+|+.++...++||||||||.+...++.. + ... ..|-|...+ .++.+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--g-~~~---~a~lLkp~l----~rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE--G-AID---AANILKPAL----ARGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC--C-ccc---HHHHhHHHH----hCCCcEEEEe
Confidence 8887 36788889999999999988889999999999998654321 1 111 222232222 3567999999
Q ss_pred cCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC----CCCCCChhhHHHHHhhcCCCCC-----HHH
Q psy5440 691 TNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP----LKTDLDRDDLSRKLAALTPGFT-----GAD 756 (1036)
Q Consensus 691 TN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~----l~~~l~~~~l~~~LA~~T~G~S-----gaD 756 (1036)
||..+ ..|++|.+ ||. .|.++.|+.++...|++..... ....+. ++.+..++.++.+|. +..
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi~~r~lPdk 389 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYIADRFLPDK 389 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCccccCchH
Confidence 99765 47999999 996 4899999999999998765431 222233 444566677666653 445
Q ss_pred HHHHHHHHHHHHH
Q psy5440 757 IANVCNEAALIAA 769 (1036)
Q Consensus 757 L~~LvneAal~A~ 769 (1036)
...++++|+....
T Consensus 390 aidlld~a~a~~~ 402 (821)
T CHL00095 390 AIDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777765443
No 92
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.6e-13 Score=163.34 Aligned_cols=203 Identities=19% Similarity=0.279 Sum_probs=145.3
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP------------- 606 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------------- 606 (1036)
....+|+||+|++++++.|..++.. .++|..+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3457899999999999999888764 2456678999999999999999999988641
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++++ ..+...+|++.+.+.. ..+.||+|||+|.+. ...++.|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naL 136 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNAL 136 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHH
Confidence 23333221 1233456776555442 345799999998762 2457888
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ...++++|.+||.+..+.+++.+ |+ ..+.|.+|+.++..+.++..+......++.+ .+..|+..+.|
T Consensus 137 Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s~G- 209 (504)
T PRK14963 137 LKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLADG- 209 (504)
T ss_pred HHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888874 34577888888989999999998 76 4699999999999999999887655445544 44678877765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+.+++.+++..+.. ....|+.+++.+++
T Consensus 210 dlR~aln~Lekl~~-----~~~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLA-----LGTPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Confidence 44566666654322 13468888776653
No 93
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=9.4e-14 Score=172.83 Aligned_cols=163 Identities=23% Similarity=0.378 Sum_probs=125.4
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh---------
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE--------- 617 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e--------- 617 (1036)
|+.|++.+|+++.+++...+.... .....++|+||||+|||++|+++|+.++.+|+.++++...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 599999999999998886432211 12235899999999999999999999999999998765432
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc-----Cc--------CCCC
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG-----FN--------TTTN 684 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg-----~~--------~~~~ 684 (1036)
.|.|....++...+..+....| ||||||||.+..... ......||..+|. |. .-++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~----------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR----------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC----------CCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 3677777777777777765555 899999999964321 1234566666652 11 2268
Q ss_pred eEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 685 VVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 685 ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
|++|||+|.. .|+++|++ ||+ .|.+..++.++..+|.+.|+-
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 9999999987 59999999 995 689999999999999999984
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.6e-13 Score=158.85 Aligned_cols=192 Identities=19% Similarity=0.303 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE-E------echhhh
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT-V------SGSEFL 616 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~-I------s~se~~ 616 (1036)
.|++|+|++.+++.|.+.+..-++ .+...+.+.|.++||+||||+|||++|+++|+.+.+.--. . +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 499999999999999999876332 2334566688999999999999999999999977553100 0 001110
Q ss_pred hh------h-----ccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC
Q psy5440 617 EM------F-----VGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT 681 (1036)
Q Consensus 617 e~------~-----vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~ 681 (1036)
.. + ...+-..+|++++.+... ...|+||||+|.+.. ...|.||..|+. .
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEe--p 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEE--P 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhc--C
Confidence 00 0 112335688888877542 346999999999942 234778888874 4
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHH
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVC 761 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lv 761 (1036)
+.++++|.+|+.++.|.|++++ |+ ..+.|++|+.++..++|.... . ++ +..+..++..+.|..++.+.-+.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 4556666666669999999999 77 689999999999888886432 1 33 33456788888887766555443
Q ss_pred H
Q psy5440 762 N 762 (1036)
Q Consensus 762 n 762 (1036)
+
T Consensus 216 ~ 216 (394)
T PRK07940 216 D 216 (394)
T ss_pred C
Confidence 3
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.3e-13 Score=164.22 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=148.3
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
.+.+|+||+|++++++.|.+.+.. .++++.+||+||+|||||++|+.+|+.++++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 457899999999999988877754 2456778999999999999999999987642
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.++++ .+.+...+|++.+.+.. ....|++|||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 2222221 12344567888777653 224699999999883 1357888
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..++. .+.++++|.+|+.++.|.+++++ |+. .+.|.+|+.++...+++..+......++. ..+..++..+.|
T Consensus 140 LKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~-~al~~ia~~s~G- 212 (559)
T PRK05563 140 LKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYED-EALRLIARAAEG- 212 (559)
T ss_pred HHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-
Confidence 888874 45678888888889999999998 774 58899999999999999888755544554 345677877766
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++.+++..+... ....|+.+++..+
T Consensus 213 ~~R~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 213 GMRDALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred CHHHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 778888888766543 2446777766553
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.54 E-value=2.3e-13 Score=154.95 Aligned_cols=205 Identities=18% Similarity=0.282 Sum_probs=147.6
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP------------- 606 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------------- 606 (1036)
..+.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|+.+.++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3457899999999999988876643 2356779999999999999999999987543
Q ss_pred -----------eEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHH
Q psy5440 607 -----------FITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQ 671 (1036)
Q Consensus 607 -----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Lnq 671 (1036)
++.+++.+ ......++++++.+... ...||+|||+|.+.. ...+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHH
Confidence 22222211 12334577787776532 235999999998831 35677
Q ss_pred HHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC
Q psy5440 672 LLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG 751 (1036)
Q Consensus 672 LL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G 751 (1036)
|+..++. .+.++++|.+||.++.|.+++++ |+ ..+.+++|+.++..++++.+++.....++. ..+..++..+.|
T Consensus 137 Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~-~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIED-EALELIARAADG 210 (355)
T ss_pred HHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC
Confidence 8888764 34577888888889988999998 77 468999999999999999988765544554 445667777755
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy5440 752 FTGADIANVCNEAALIAARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 752 ~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aie 786 (1036)
+.+.+.+.+..++..+ ...|+.+++++++.
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 5666666666555432 24589998887654
No 97
>PRK06893 DNA replication initiation factor; Validated
Probab=99.54 E-value=3.3e-13 Score=145.62 Aligned_cols=211 Identities=10% Similarity=0.084 Sum_probs=132.5
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
....+|++.++.+... +. ..+. +.+.. .....++||||||||||+|++|+|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~--~~---~~~~--~~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LL---DSLR--KNFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HH---HHHH--HHhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3467899999877432 11 1111 01111 112357999999999999999999986 3455555554321
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCC-eEEEEecCCCc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTN-VVVLAATNRVD 695 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~-ViVIaaTN~pd 695 (1036)
. ...++++..+ ...+|+||||+.+... ......+..++..+. .... ++|++++..|.
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~~---------~~~~~~l~~l~n~~~---~~~~~illits~~~p~ 137 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIGN---------EEWELAIFDLFNRIK---EQGKTLLLISADCSPH 137 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHH---HcCCcEEEEeCCCChH
Confidence 1 1112333332 3469999999998532 222334444444332 3333 45566666677
Q ss_pred ccc---HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 696 VLD---KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 696 ~LD---pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
.++ +.|.++.++...+.++.||.++|.+|++.++......++. +..+.|++..+| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~-~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSD-EVANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 654 8899855667889999999999999999887644444544 445788887765 56777777775433233 33
Q ss_pred CCcccHHHHHHHH
Q psy5440 773 HTTIVMKHFEQAI 785 (1036)
Q Consensus 773 ~~~It~~d~~~Ai 785 (1036)
...||...+++++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 4579988887765
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.3e-13 Score=164.61 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=146.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe------------E
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF------------I 608 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf------------i 608 (1036)
...+|+||+|++.+++.|.+++.. .+++..+||+||+|||||++|+++|+.+++.- -
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 346899999999999988877654 24567789999999999999999999887520 0
Q ss_pred EE-ech--------hhhhhh--ccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 609 TV-SGS--------EFLEMF--VGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 609 ~I-s~s--------e~~e~~--vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
.+ +|. ++.+.- ...+...+|++.+.+... .-.|++|||+|.+.. ...|.||
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a~NaLL 145 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TAFNAML 145 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HHHHHHH
Confidence 00 111 111110 112334677777765432 135999999999842 3467888
Q ss_pred HHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 674 VEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 674 ~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
..|+. .+..+++|.+|+.+..+.+.+++ |+ .++.+..++.++..+.|+..+...+..++.+ .+..|++.+.| +
T Consensus 146 KtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G-s 218 (618)
T PRK14951 146 KTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG-S 218 (618)
T ss_pred Hhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88773 45678888888888889889988 76 6799999999999999998887655445543 44678877776 6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 754 GADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 754 gaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
.+++.+++..+... +...|+.+++++.
T Consensus 219 lR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 219 MRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 77888877665533 2456777666554
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=1.8e-13 Score=172.81 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=143.2
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-+++.++|.++. +..++..|.. +...+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 170 ~~~~~~igr~~e---i~~~~~~l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEE---IRRTIQVLSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHH---HHHHHHHHhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 357889999975 4444444422 223568999999999999999999975 678899988
Q ss_pred hhhh--hhhccCchhHHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 613 SEFL--EMFVGVGPSRVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 613 se~~--e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
+.++ ..|.|..+.+++.+|..+.. ..|+||||||||.|.+.+... +. ....|.|...+ .+..+.+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~---~d~~~~Lk~~l----~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GA---MDAGNMLKPAL----ARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---ch---hHHHHHhchhh----hcCceEEEE
Confidence 8876 45788888999999998865 458999999999997543221 11 12233333222 456799999
Q ss_pred ecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC--CCCC-hhhHHHHHhhcCCCC-----CHHH
Q psy5440 690 ATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK--TDLD-RDDLSRKLAALTPGF-----TGAD 756 (1036)
Q Consensus 690 aTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~--~~l~-~~~l~~~LA~~T~G~-----SgaD 756 (1036)
+||..+ .+|++|.| ||. .|.++.|+.+++..||+.+.+.+. ..+. .+..+...+.++.+| -+..
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 999775 47999999 996 589999999999999998766433 2221 233334455555544 3556
Q ss_pred HHHHHHHHHHHHH
Q psy5440 757 IANVCNEAALIAA 769 (1036)
Q Consensus 757 L~~LvneAal~A~ 769 (1036)
...++++|+..+.
T Consensus 385 Aidlld~a~a~~~ 397 (852)
T TIGR03346 385 AIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 6678888765543
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.53 E-value=2.9e-13 Score=151.96 Aligned_cols=204 Identities=20% Similarity=0.229 Sum_probs=131.9
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
...+.+|+|++|++++++.+..++.. .+.|..+||+||||+|||++|++++++.+.+++.+++++ . .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-~ 80 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-R 80 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-c
Confidence 34567899999999999998887752 234667788999999999999999999999999999876 1 1
Q ss_pred hccCchhHHHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 619 FVGVGPSRVRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.......+........ ...+.||+|||+|.+.. ......+..+ ++. ...++.+|.+||.+..+
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~---le~--~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSF---MEA--YSKNCSFIITANNKNGI 144 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHH---HHh--cCCCceEEEEcCChhhc
Confidence 1111111222111111 13468999999998731 1222334444 332 23567888899999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC-------CCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL-------KTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR 770 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l-------~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r 770 (1036)
+++|++ ||. .+.++.|+.+++.++++.++... ...++.+ .+..++....| |++.+++.....+.
T Consensus 145 ~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~~- 215 (316)
T PHA02544 145 IEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYAS- 215 (316)
T ss_pred hHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHHc-
Confidence 999999 884 68999999999998877554321 2223333 33555554433 55555554332221
Q ss_pred hcCCcccHHHHH
Q psy5440 771 DLHTTIVMKHFE 782 (1036)
Q Consensus 771 ~~~~~It~~d~~ 782 (1036)
...++..++.
T Consensus 216 --~~~i~~~~l~ 225 (316)
T PHA02544 216 --TGKIDAGILS 225 (316)
T ss_pred --cCCCCHHHHH
Confidence 2356665544
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.52 E-value=5.2e-13 Score=143.25 Aligned_cols=203 Identities=12% Similarity=0.127 Sum_probs=134.1
Q ss_pred CCCcccccccc--ChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 540 DIGVRFKDVAG--CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G--~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
....+|+++++ ..++...+.++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34578999873 3445444444332 22335679999999999999999999875 67899999887
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC-C
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN-R 693 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN-~ 693 (1036)
+.+.. .. .....+|+|||+|.+.. .....+..++..+ ......++|.+++ .
T Consensus 81 ~~~~~------------~~--~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~---~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLAF------------DF--DPEAELYAVDDVERLDD-----------AQQIALFNLFNRV---RAHGQGALLVAGPAA 132 (227)
T ss_pred hHHHH------------hh--cccCCEEEEeChhhcCc-----------hHHHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 64321 11 12356999999998731 1223333344333 2344433444444 3
Q ss_pred Cc--cccHHhhCCCCc--ceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 694 VD--VLDKALLRPGRF--DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 694 pd--~LDpALlRpGRF--dr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
|. .+.+.|++ || ...+.+++|+.+++..+++.+.......++.+ .++.|++..+| +.+++.++++.-...|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 32 35677876 66 57899999999999999988776555455544 45677776555 77888888887544443
Q ss_pred HhcCCcccHHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aie 786 (1036)
..+..||...+.+++.
T Consensus 209 -~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 -EQKRPVTLPLLREMLA 224 (227)
T ss_pred -HhCCCCCHHHHHHHHh
Confidence 3457899988887764
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.52 E-value=2.7e-13 Score=167.04 Aligned_cols=208 Identities=22% Similarity=0.288 Sum_probs=139.5
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
..+|+|++|++++..+...+...+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~------ 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA------ 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh------
Confidence 47899999999988643333333322 112468999999999999999999999999999887531
Q ss_pred CchhHHHHHHHHhh-----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC--C
Q psy5440 622 VGPSRVRDMFSMAR-----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR--V 694 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~--p 694 (1036)
+...++..+..+. .....||||||||.+.. ...+.|+..++ ...+++|++|+. .
T Consensus 89 -~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~aTTenp~ 149 (725)
T PRK13341 89 -GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGATTENPY 149 (725)
T ss_pred -hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEecCCChH
Confidence 1233445554442 13457999999998842 12344555554 345777776643 3
Q ss_pred ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC-------CCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP-------LKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~-------l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
..++++|++ |+ ..+.+++++.+++..|++..+.. ....++ +..++.|++..+| ..+.+.+++..++..
T Consensus 150 ~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~-deaL~~La~~s~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 150 FEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE-PEAEKHLVDVANG-DARSLLNALELAVES 224 (725)
T ss_pred hhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 468899998 64 46899999999999999988862 222344 3445778887755 556777777665533
Q ss_pred HHHhcC--CcccHHHHHHHHHHH
Q psy5440 768 AARDLH--TTIVMKHFEQAIERV 788 (1036)
Q Consensus 768 A~r~~~--~~It~~d~~~Aierv 788 (1036)
+..... ..|+.+++++++.+.
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred cccCCCCceeccHHHHHHHHHHh
Confidence 222211 237888888887764
No 103
>KOG2028|consensus
Probab=99.52 E-value=1.8e-13 Score=151.15 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=140.2
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC---eEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP---FITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp---fi~Is~se~~e~ 618 (1036)
.-+++|.+|++++..+ .-++..+.... ++ ..++|+||||||||+||+.||....-+ |+++++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~-------~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~---- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN---- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcC-------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc----
Confidence 3568999999887655 23332221111 22 258999999999999999999988766 77777643
Q ss_pred hccCchhHHHHHHHHhhc-----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec--
Q psy5440 619 FVGVGPSRVRDMFSMARK-----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT-- 691 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT-- 691 (1036)
.....+|++|++++. ....|||||||+.+.+..+ ..||-. ..++.|++|+||
T Consensus 201 ---a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ--------------D~fLP~----VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 201 ---AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ--------------DTFLPH----VENGDITLIGATTE 259 (554)
T ss_pred ---cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh--------------hcccce----eccCceEEEecccC
Confidence 345689999999875 3357999999999854321 122322 245678999887
Q ss_pred CCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC----------CCCCC--CChhhHHHHHhhcCCCCCHHHHHH
Q psy5440 692 NRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK----------PLKTD--LDRDDLSRKLAALTPGFTGADIAN 759 (1036)
Q Consensus 692 N~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~----------~l~~~--l~~~~l~~~LA~~T~G~SgaDL~~ 759 (1036)
|..-.|..+|++ |+ +++.+.....+....||...+. ++... .-.+.+++.++..+.|=..+.|..
T Consensus 260 NPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 260 NPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred CCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 344489999999 65 5678888888999999887443 11110 123456688898988865554444
Q ss_pred HHHHHHHHHHHhc---CCcccHHHHHHHHHH
Q psy5440 760 VCNEAALIAARDL---HTTIVMKHFEQAIER 787 (1036)
Q Consensus 760 LvneAal~A~r~~---~~~It~~d~~~Aier 787 (1036)
|--.+.+...|.+ +..++.+|+.+++.+
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 3222233344443 346889999888876
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.3e-13 Score=161.81 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=146.4
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s~ 612 (1036)
...+|+||+|++++++.|...+.. .+++..+||+||||+|||++|+++|+.+++.. -.+ +|
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 346899999999999988877654 24567789999999999999999999887631 111 01
Q ss_pred h--------hhhhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 S--------EFLEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 s--------e~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
. ++.+. ....+...+|++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEe 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEE 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhC
Confidence 1 11110 001233457777776643 2236999999998831 356888888874
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...+.......+.+ .+..+++.+.| +.+++.
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~al 218 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRDAL 218 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 45678888888888888888887 76 6789999999999988888776544334433 34667777765 668888
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++..+... +...|+.+++...+
T Consensus 219 ~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 219 SLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888776543 35567877776654
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=4.3e-13 Score=151.57 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=134.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-----CeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-----PFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-----pfi~Is~se 614 (1036)
..+.+|+||+|++++.+.|+.++.. ...| ++||+||||||||++|+++|+++.. .++.++.++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 3457899999999999888776542 1223 5899999999999999999998732 366666665
Q ss_pred hhhhhccCchhHHHHHHHHh---h----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEE
Q psy5440 615 FLEMFVGVGPSRVRDMFSMA---R----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVV 687 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~A---r----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViV 687 (1036)
... ...+++..... . ...+.||+|||+|.+.. ...+.|+..|+.+ ...+.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~--~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIY--SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcc--cCCceE
Confidence 321 22344443321 1 12357999999999842 1234455555532 334567
Q ss_pred EEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 688 LAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 688 IaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
|.+||.+..+.++|++ |+ ..+.+++|+.++....++..+...+..++.+. +..++..+.| |++.+++.--..
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~-l~~i~~~~~g----DlR~aln~Lq~~ 204 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG-LEAIIFTADG----DMRQALNNLQAT 204 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----CHHHHHHHHHHH
Confidence 7788888889999998 66 46899999999999999988876655566544 4667766654 666665543211
Q ss_pred HHHhcCCcccHHHHHH
Q psy5440 768 AARDLHTTIVMKHFEQ 783 (1036)
Q Consensus 768 A~r~~~~~It~~d~~~ 783 (1036)
+ .+...|+.+++.+
T Consensus 205 ~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 205 H--SGFGFVNQENVFK 218 (319)
T ss_pred H--hcCCCCCHHHHHH
Confidence 1 2244677777654
No 106
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.51 E-value=5.4e-13 Score=161.56 Aligned_cols=216 Identities=19% Similarity=0.204 Sum_probs=142.5
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEechh
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEA----------NVPFITVSGSE 614 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~se 614 (1036)
+.|.|.++..++|..++..... | ..|.+ ++|+|+||||||++++.+.+++ .+.+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6788888877777776665211 1 22434 5699999999999999998765 25678999965
Q ss_pred hhhhh----------c------cC-chhHHHHHHHHhh--cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHH
Q psy5440 615 FLEMF----------V------GV-GPSRVRDMFSMAR--KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVE 675 (1036)
Q Consensus 615 ~~e~~----------v------G~-~~~~vr~lF~~Ar--~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~e 675 (1036)
+...+ . |. ....+..+|.... ....+||+|||||.|..+ ...+|..|+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 43221 0 11 1234556666542 234579999999999632 12455555554
Q ss_pred hhcCcCCCCeEEEEecCC---CccccHHhhCCCCcce-EEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC
Q psy5440 676 MDGFNTTTNVVVLAATNR---VDVLDKALLRPGRFDR-QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG 751 (1036)
Q Consensus 676 mDg~~~~~~ViVIaaTN~---pd~LDpALlRpGRFdr-~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G 751 (1036)
.. .....++|||++|. ++.|+|.+++ ||.. .|.|++++.+++.+||+..+......++ +..+..+|+....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLd-DdAIELIArkVAq 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIID-HTAIQLCARKVAN 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHhhhh
Confidence 32 23457999999986 5678888888 6543 4788999999999999999875432233 4445666664432
Q ss_pred CCHHHHH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 752 FTGADIA---NVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 752 ~SgaDL~---~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
. .+|++ .+|+.|+.. .....|+.+|+.+|++.+.
T Consensus 971 ~-SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 V-SGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred c-CCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 2 23444 455555543 2345799999999998763
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.1e-13 Score=161.53 Aligned_cols=203 Identities=17% Similarity=0.226 Sum_probs=143.3
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
...+|+||+|++.+++.|.+.+.. .+++..+||+||||||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 457899999999999888877753 2345679999999999999999999988763
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.++++. ..+...++.+.+.+. .....||||||+|.+.. ...|.|
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------EAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------HHHHHH
Confidence 22232211 112234555443332 22346999999999832 346888
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ....+++|.+||.+..+.+.|++ |+ ..|.|..++.++...+|+..+......++.+ .+..|++.+.|
T Consensus 140 Lk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~~s~G- 212 (624)
T PRK14959 140 LKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIARRAAG- 212 (624)
T ss_pred HHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888874 34578888889988889889988 77 4689999999999999988776555445544 44677877765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+.+++.+++..++ ..+...|+.+++..++
T Consensus 213 dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 4456666665432 2345578988887765
No 108
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=2.8e-13 Score=156.99 Aligned_cols=187 Identities=26% Similarity=0.345 Sum_probs=121.8
Q ss_pred CCCccccc-cccChHHHHHHHHHHHH----hcCc-hhHhhhcCCC-CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 540 DIGVRFKD-VAGCEEAKVEIMEFVNF----LKNP-QQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 540 ~~~v~F~D-V~G~eeaK~eL~eiV~~----Lk~p-~~~~~lG~~~-pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
.+.-.|++ |+|++++++.+...+.. +... ..-..-+... ..++||+||||||||++|+++|..+++||..+++
T Consensus 70 ~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 33344443 69999999999766632 2110 0000001111 3579999999999999999999999999999999
Q ss_pred hhhhh-hhccCch-hHHHHHHHHh----hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-----
Q psy5440 613 SEFLE-MFVGVGP-SRVRDMFSMA----RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT----- 681 (1036)
Q Consensus 613 se~~e-~~vG~~~-~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~----- 681 (1036)
+.+.. .|+|... ..+..++..+ ....++||||||||.+.+++.......+...+.+.+.||..|+|...
T Consensus 150 ~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~ 229 (413)
T TIGR00382 150 TTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQ 229 (413)
T ss_pred hhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccC
Confidence 88754 4777643 3344444322 23467899999999998754322211122223567778877776421
Q ss_pred ------CCCeEEEEecCCCc--------------------------------------------------cccHHhhCCC
Q psy5440 682 ------TTNVVVLAATNRVD--------------------------------------------------VLDKALLRPG 705 (1036)
Q Consensus 682 ------~~~ViVIaaTN~pd--------------------------------------------------~LDpALlRpG 705 (1036)
..+.++|.|+|-.- .+.|+|+ |
T Consensus 230 ~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--g 307 (413)
T TIGR00382 230 GGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--G 307 (413)
T ss_pred CCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--C
Confidence 23567888877510 0224444 4
Q ss_pred CcceEEEecCCChhhHHHHHHHh
Q psy5440 706 RFDRQIFVPAPDIKGRASIFKVH 728 (1036)
Q Consensus 706 RFdr~I~i~~Pd~eeR~~IL~~~ 728 (1036)
|+|..+.+.+.+.++..+|+...
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHH
Confidence 99999999999999999998763
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.4e-13 Score=152.70 Aligned_cols=211 Identities=16% Similarity=0.219 Sum_probs=141.9
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh----
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF---- 615 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~---- 615 (1036)
..+.+|+||+|++.+++.+.+.+.. .+.|.++|||||||+|||++|+++|+.+.++.....+..+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 4457899999999998888776643 2457789999999999999999999987653221111110
Q ss_pred h--hhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 616 L--EMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 616 ~--e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
. +.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++. .....++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~--~~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEE--PPAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCceEEEE
Confidence 0 01111223567778876643 2347999999998732 246777777764 344566777
Q ss_pred ecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 690 ATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 690 aTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
+|+.+..+.+++.+ |+ ..+.+++|+.++...++...+...+..++. ..++.++..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~-~al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFED-DALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 77778889999988 65 468999999999999998877755544554 445677777654 5555556555444332
Q ss_pred HhcCCcccHHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aie 786 (1036)
+.. |+.++++.++.
T Consensus 218 --~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 --GKN-ITRQAVTENLN 231 (367)
T ss_pred --CCC-CCHHHHHHHhC
Confidence 222 88877765543
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.8e-13 Score=160.76 Aligned_cols=210 Identities=20% Similarity=0.321 Sum_probs=149.2
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE---Eechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT---VSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~---Is~se~~ 616 (1036)
..+.+|+||+|++.+++.|...+.. .+++..+||+||+|||||++|+++|..+.++-.. -.|....
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4567899999999999988877753 2456778999999999999999999988764210 1121111
Q ss_pred ---hh----hc-----cCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc
Q psy5440 617 ---EM----FV-----GVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN 680 (1036)
Q Consensus 617 ---e~----~v-----G~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~ 680 (1036)
.. +. ..+...+|++.+.+... ...|++|||+|.+.. ...|.||..|+.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE-- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE-- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc--
Confidence 00 00 12345578887776542 346999999998832 357888888874
Q ss_pred CCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHH
Q psy5440 681 TTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANV 760 (1036)
Q Consensus 681 ~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~L 760 (1036)
.+..+++|.+|+.++.|.+++++ |+. .+.|.+++.++...+|+..+......++.+ .++.+|..+.| +.+++.++
T Consensus 145 PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHH
Confidence 55678888888899999999998 774 799999999999999988776554334443 34677877765 55777777
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 761 CNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 761 vneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+..++..+ ...|+.+++.+++
T Consensus 220 Lekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHhc----cCCCCHHHHHHHH
Confidence 76654332 3348888776653
No 111
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=5.8e-13 Score=159.70 Aligned_cols=221 Identities=17% Similarity=0.217 Sum_probs=144.1
Q ss_pred CCccccccccChHH---HHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEec
Q psy5440 541 IGVRFKDVAGCEEA---KVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eea---K~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~ 612 (1036)
...+|++++.-+.- ...+..++ .++. .....++|||++|||||+|++||++++ +..++++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~ava---e~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVA---EAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHH---hCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 45789998744332 22223322 2221 112348999999999999999999976 568899999
Q ss_pred hhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 613 SEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 613 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
.+|.+.+.........+.|.... ..+.+|+||||+.+..+. .....+-.++..+ ..+...+|| |+|
T Consensus 353 eef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke---------~tqeeLF~l~N~l---~e~gk~III-TSd 418 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE---------STQEEFFHTFNTL---HNANKQIVL-SSD 418 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH---------HHHHHHHHHHHHH---HhcCCCEEE-ecC
Confidence 99887664332222223344322 246899999999985322 1112222233322 223334455 555
Q ss_pred C-Cc---cccHHhhCCCCc--ceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 693 R-VD---VLDKALLRPGRF--DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 693 ~-pd---~LDpALlRpGRF--dr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
. |. .|++.|++ || ...+.+..||.+.|.+||+.++......+. +++++.|+....+ +.+.|..+++....
T Consensus 419 ~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~-~eVi~yLa~r~~r-nvR~LegaL~rL~a 494 (617)
T PRK14086 419 RPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAP-PEVLEFIASRISR-NIRELEGALIRVTA 494 (617)
T ss_pred CChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 4 33 57889999 77 456788999999999999999886665555 4455778877654 57888888887655
Q ss_pred HHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 767 IAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 767 ~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
.+... ...|+.+.+++++..++.
T Consensus 495 ~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 495 FASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHhh-CCCCCHHHHHHHHHHhhc
Confidence 54443 567999999888877544
No 112
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.9e-13 Score=158.59 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=142.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------eEEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------FITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------fi~I-s~ 612 (1036)
...+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++. .-.+ +|
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 347899999999999988776643 2456778999999999999999999987651 1111 01
Q ss_pred h--------hhhhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 S--------EFLEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 s--------e~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
. ++.+. ....+...++.+.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------~a~naLLK~LEe 145 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------QSFNALLKTLEE 145 (546)
T ss_pred HHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------------HHHHHHHHHHhc
Confidence 0 11110 011123455666665542 2346999999998832 456788888873
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+++|.+|+.+..+.+++++ |+ ..+.+.+++.++....++..+.......+.. .+..++..+.| +.+++.
T Consensus 146 --pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~G-dlR~al 218 (546)
T PRK14957 146 --PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAKG-SLRDAL 218 (546)
T ss_pred --CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 45677788788888888888888 77 6799999999999888888776554344443 34567777754 667777
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++..++... ...|+.+++++++
T Consensus 219 nlLek~i~~~----~~~It~~~V~~~l 241 (546)
T PRK14957 219 SLLDQAISFC----GGELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7776655332 2568887777643
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8e-13 Score=160.15 Aligned_cols=202 Identities=16% Similarity=0.220 Sum_probs=145.9
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
...+|+||+|++++++.|.+.+.. .+++..+||+||+|+|||++|+++|+.++++
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 347899999999999999877653 2457788999999999999999999988653
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++.. ..+...+|++.+.+... ...|++|||+|.+.. ...|.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHH
Confidence 22222111 12334677777666432 225999999998832 356888
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ...++++|.+||.++.|.+.+++ |+ ..+.|..++.++....+...+......++.+. +..+++.+.|
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~a-l~~la~~a~G- 212 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAA-LALVARKGDG- 212 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-
Confidence 888873 56688888899999999999998 66 46889999999888888887776554455444 4678877776
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++.+++..+.... ...|+.+++...
T Consensus 213 ~lr~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 5577777776544332 235777776654
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.1e-12 Score=157.29 Aligned_cols=209 Identities=20% Similarity=0.245 Sum_probs=144.9
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-----EEEech-
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-----ITVSGS- 613 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-----i~Is~s- 613 (1036)
..+.+|+||+|++.+++.|.+.+.. .+.|.++||+||||+|||++|+++|+.+.+.- ..-.|.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3457899999999999888776532 34567899999999999999999999875410 001111
Q ss_pred ----------hhhhh--hccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 614 ----------EFLEM--FVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 614 ----------e~~e~--~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
++.+. ....+...+|.+.+.+... ...|++|||+|.+.. ...|.||..|+
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKtLE 144 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKTLE 144 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHHHH
Confidence 11110 0012334577777665532 235999999998831 24577888777
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADI 757 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL 757 (1036)
. .+..+++|.+|+.+..|.+++++ |+. .+.+.+|+..+....++..+...+..++.+. +..++..+.| +.+++
T Consensus 145 E--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea-l~~La~lS~G-dlR~A 217 (605)
T PRK05896 145 E--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNA-IDKIADLADG-SLRDG 217 (605)
T ss_pred h--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHH
Confidence 3 45678888888889999999998 774 6899999999999999988765544455444 4677777765 56777
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 758 ANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 758 ~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
.++++..+.. .+ ..|+.+++++.
T Consensus 218 lnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 218 LSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 7777664332 22 23888877765
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=153.66 Aligned_cols=228 Identities=20% Similarity=0.211 Sum_probs=143.7
Q ss_pred CCCccccccc-cChHH--HHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 540 DIGVRFKDVA-GCEEA--KVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 540 ~~~v~F~DV~-G~eea--K~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
.+..+|++.+ |.... ...++++.. ++.. .......+++||||||+|||+|++|+++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---cccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3567899987 54322 223333322 1110 111223579999999999999999999876 6889999998
Q ss_pred hhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
+|...+.......-...|.... ..+.+|+||||+.+..+.. ...+...++|.+. .....+|+++++.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----~qeelf~l~N~l~-------~~~k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----TQEEFFHTFNSLH-------TEGKLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----hHHHHHHHHHHHH-------HCCCcEEEecCCC
Confidence 8766543221111112344332 3457999999999853211 1223333444443 2234455555555
Q ss_pred Cc---cccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH-
Q psy5440 694 VD---VLDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI- 767 (1036)
Q Consensus 694 pd---~LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~- 767 (1036)
|. .+++.|++ ||. ..+.+.+|+.++|..||+..+......++. +.+..|+....+ +.+.|.+.++..++.
T Consensus 246 p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~-evl~~la~~~~~-dir~L~g~l~~l~~~~ 321 (445)
T PRK12422 246 PQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEE-TALDFLIEALSS-NVKSLLHALTLLAKRV 321 (445)
T ss_pred HHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 54 56789998 885 788999999999999999998866544554 445667776654 556777777765422
Q ss_pred HHHh-cCCcccHHHHHHHHHHHHc
Q psy5440 768 AARD-LHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 768 A~r~-~~~~It~~d~~~Aiervi~ 790 (1036)
|... ....||.+++++++...+.
T Consensus 322 a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 322 AYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHhhCCCCCHHHHHHHHHHhhh
Confidence 2222 3467999999999987653
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.2e-13 Score=158.81 Aligned_cols=209 Identities=17% Similarity=0.151 Sum_probs=144.6
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------eEEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------FITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------fi~I-s~ 612 (1036)
...+|+||+|++.+++.|..++.. .++|..+||+||+|||||++|+++|+.+++. .-.+ +|
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 356899999999999998877753 2457778999999999999999999988752 1111 11
Q ss_pred hhh----------hhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh
Q psy5440 613 SEF----------LEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676 (1036)
Q Consensus 613 se~----------~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em 676 (1036)
-.+ ++. ....+-..+|++.+.+.. ...-|++|||+|.+.. ...|.||..|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------~A~NALLK~L 142 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------AGFNALLKIV 142 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------HHHHHHHHHH
Confidence 111 110 001123456666554432 2235999999998832 3678888888
Q ss_pred hcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHH
Q psy5440 677 DGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 677 Dg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaD 756 (1036)
+. .+.++++|.+|+.++.|.++|++ |. .++.|..++.++..+.+..++......++.+ .+..+++.+.| +.++
T Consensus 143 EE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G-dlR~ 215 (584)
T PRK14952 143 EE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG-SPRD 215 (584)
T ss_pred hc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 73 56688888888989999999998 75 6799999999999999988887655445543 34566666654 6678
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++...+..+ ....|+.+++...
T Consensus 216 aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 216 TLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 888887654321 2446777666554
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.5e-12 Score=157.68 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=150.6
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE---------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV--------- 610 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I--------- 610 (1036)
....+|+||+|++.+++.|...+.. .++|..+||+||+|+|||++|+++|+.+++.....
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 3456899999999999998877653 35678899999999999999999999887642111
Q ss_pred ----echhhh--------hhh--ccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 611 ----SGSEFL--------EMF--VGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 611 ----s~se~~--------e~~--vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
+|..+. +.- ...+...+|++.+.+... ...|++|||+|.+.. ...|.|
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naL 152 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNAL 152 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHH
Confidence 111111 110 012345678887776532 246999999998831 356788
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+......++.+ .+..|++.+.|
T Consensus 153 LKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a~G- 225 (598)
T PRK09111 153 LKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAAEG- 225 (598)
T ss_pred HHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888873 45677888888888888889988 76 5699999999999999998887655455544 44667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+.+++.+++..+... ....|+.+++++.+
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 678888888775543 23468888877654
No 118
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=9.4e-13 Score=151.26 Aligned_cols=175 Identities=30% Similarity=0.399 Sum_probs=128.3
Q ss_pred ccccChHHHHHHHHHHHH-hcCchhHhhh-cCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hhcc-C
Q psy5440 547 DVAGCEEAKVEIMEFVNF-LKNPQQYIDL-GAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MFVG-V 622 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~-Lk~p~~~~~l-G~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~vG-~ 622 (1036)
-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999765543 2211111111 1235789999999999999999999999999999999998875 5777 4
Q ss_pred chhHHHHHHHHhh-------------------------------------------------------------------
Q psy5440 623 GPSRVRDMFSMAR------------------------------------------------------------------- 635 (1036)
Q Consensus 623 ~~~~vr~lF~~Ar------------------------------------------------------------------- 635 (1036)
.+..++++|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666666550
Q ss_pred ------------------------------------------------------------------------cCCCeEEE
Q psy5440 636 ------------------------------------------------------------------------KHAPCILF 643 (1036)
Q Consensus 636 ------------------------------------------------------------------------~~aP~ILf 643 (1036)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01236999
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------cCCCCeEEEEecC----CCccccHHhhCCCCcceEE
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--------NTTTNVVVLAATN----RVDVLDKALLRPGRFDRQI 711 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--------~~~~~ViVIaaTN----~pd~LDpALlRpGRFdr~I 711 (1036)
|||||.++.+... .+.+...+.+.+.||..++|- -...++++||+.- .|+.|=|.|.- ||...+
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999875421 223344556778899888874 2346788888753 46667777765 999999
Q ss_pred EecCCChhhHHHHH
Q psy5440 712 FVPAPDIKGRASIF 725 (1036)
Q Consensus 712 ~i~~Pd~eeR~~IL 725 (1036)
.+..++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=9.4e-13 Score=164.07 Aligned_cols=209 Identities=16% Similarity=0.097 Sum_probs=142.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------eEEE-e
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------FITV-S 611 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------fi~I-s 611 (1036)
....+|+||+|++.+++.|...+.. .+++..+||+||+|||||++|++||+.++|. .-.| +
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 3457899999999999998877653 3456778999999999999999999998762 1111 1
Q ss_pred chhh----------hhhh--ccCchhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHH
Q psy5440 612 GSEF----------LEMF--VGVGPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVE 675 (1036)
Q Consensus 612 ~se~----------~e~~--vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~e 675 (1036)
|..+ .+.- ...+-..+|++-+.+. .....|+||||+|.|.. ...|.||..
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------~a~NaLLK~ 143 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------QGFNALLKI 143 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------HHHHHHHHH
Confidence 1111 1100 0012345565544332 23346999999999932 456788888
Q ss_pred hhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHH
Q psy5440 676 MDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGA 755 (1036)
Q Consensus 676 mDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~Sga 755 (1036)
|+. ...++++|.+|+.++.|-++|++ |+ .++.|..++.++..++|+..+......++.+. +..|++...| +.+
T Consensus 144 LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~ea-l~lLa~~sgG-dlR 216 (824)
T PRK07764 144 VEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGV-LPLVIRAGGG-SVR 216 (824)
T ss_pred HhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHH
Confidence 874 45678888888888989999998 66 67899999999999999988875554444443 4566766655 667
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHH
Q psy5440 756 DIANVCNEAALIAARDLHTTIVMKHFEQ 783 (1036)
Q Consensus 756 DL~~LvneAal~A~r~~~~~It~~d~~~ 783 (1036)
++.++++..+.. .....|+.+++..
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~a 241 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHH
Confidence 777777664422 2244566665543
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.7e-12 Score=156.55 Aligned_cols=209 Identities=17% Similarity=0.194 Sum_probs=146.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------eEEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------FITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------fi~I-s~ 612 (1036)
.+.+|+||+|++.+++.|...+.. .+++..+||+||||+|||++|+++|+.++++ .-.+ +|
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 356899999999999998877753 2456779999999999999999999988652 1111 11
Q ss_pred hhhhhh-------hcc---CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 SEFLEM-------FVG---VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 se~~e~-------~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
-.+.+. +-| .+...++++.+.+.. ....|++|||+|.+. ....|.||..++.
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~LEe 145 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIEE 145 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhhcc
Confidence 111110 111 123456666554432 234699999999883 1357888888873
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+++|.+|+.+..|.++|++ |+. .+.+.+++.++..++++..+......++.+ .+..|++.+.| +.+++.
T Consensus 146 --pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR~al 218 (563)
T PRK06647 146 --PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred --CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 56678888888888999999998 774 589999999999999988876555445444 44668877766 677888
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++..++..+ ...|+.+++.+++
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8887655432 3457877776654
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.9e-12 Score=153.72 Aligned_cols=209 Identities=20% Similarity=0.260 Sum_probs=144.2
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-------CeEE-Eec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-------PFIT-VSG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-------pfi~-Is~ 612 (1036)
.+.+|+||+|++.+...|...+.. .+++..+||+||+|+|||++|+.+|..+++ |+-. .+|
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 456899999999999988777744 234567899999999999999999998764 1111 112
Q ss_pred hhhhh-----hh-----ccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 SEFLE-----MF-----VGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 se~~e-----~~-----vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
..+.. .+ ...+...+|.+.+.+.. ....|++|||+|.+.. ...|.||..++.
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~LEe 145 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTLEE 145 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHHhc
Confidence 11111 00 11223446666555542 2347999999998832 345777777774
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+++|.+|+.++.+.+++++ |+. .+.+.+|+.++...+++.+++.....++.+. +..|+..+.| +.+++.
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~a-l~~La~~s~G-~lr~al 218 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKA-LDLLAQASEG-GMRDAA 218 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHH
Confidence 34567777777888889999988 764 6899999999999999998876554454443 4677877765 567777
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
++++.++.. ....|+.+++++++
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHh
Confidence 777766543 24468888877654
No 122
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=8.4e-13 Score=151.73 Aligned_cols=175 Identities=29% Similarity=0.401 Sum_probs=130.0
Q ss_pred cccChHHHHHHHHHHHH-hcCchhHhhhc-CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hhcc-Cc
Q psy5440 548 VAGCEEAKVEIMEFVNF-LKNPQQYIDLG-AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MFVG-VG 623 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~-Lk~p~~~~~lG-~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~vG-~~ 623 (1036)
|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|..+++||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 99999999999776633 21111000111 113689999999999999999999999999999999999987 5888 44
Q ss_pred hhHHHHHHHHhh--------------------------------------------------------------------
Q psy5440 624 PSRVRDMFSMAR-------------------------------------------------------------------- 635 (1036)
Q Consensus 624 ~~~vr~lF~~Ar-------------------------------------------------------------------- 635 (1036)
+..++++|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 567777777661
Q ss_pred --c--------------------------------------------------------------------CCCeEEEEc
Q psy5440 636 --K--------------------------------------------------------------------HAPCILFID 645 (1036)
Q Consensus 636 --~--------------------------------------------------------------------~aP~ILfID 645 (1036)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 123599999
Q ss_pred CchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------cCCCCeEEEEecC----CCccccHHhhCCCCcceEEEe
Q psy5440 646 EIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--------NTTTNVVVLAATN----RVDVLDKALLRPGRFDRQIFV 713 (1036)
Q Consensus 646 EIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--------~~~~~ViVIaaTN----~pd~LDpALlRpGRFdr~I~i 713 (1036)
|||.|+.+.+. .+.+...+.+...||..++|- -...+|++||+-- .|+.|-|.|.- ||...+.+
T Consensus 257 EiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 257 EIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred cchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999876432 233444556778899888873 2346788888753 46677788876 99999999
Q ss_pred cCCChhhHHHHHH
Q psy5440 714 PAPDIKGRASIFK 726 (1036)
Q Consensus 714 ~~Pd~eeR~~IL~ 726 (1036)
..++.++...||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999983
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.9e-12 Score=154.21 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=145.0
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
.+.+|+||+|++++++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.++
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 457899999999999999877743 2457778999999999999999999987431
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++++ ..+-..+|++.+.+... ..-|++|||+|.+. ....|.|
T Consensus 78 ~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 22222111 01235677776654321 12599999999883 2467788
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
|..|+. .+..+.+|.+|+.+..|.+++++ |. ..++|.+++.++....++..+...+..++.+ .++.|+..+.|
T Consensus 138 LK~LEE--pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G- 210 (535)
T PRK08451 138 LKTLEE--PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG- 210 (535)
T ss_pred HHHHhh--cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888874 35567778788888999999999 75 5789999999999999888887655445544 45678877766
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+++.+++..+...+ ...||.+++.+.
T Consensus 211 dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7788888887766443 345777666543
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=2.7e-12 Score=141.34 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=117.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh------hhhhhccCchhHHHHH--------------------HH
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE------FLEMFVGVGPSRVRDM--------------------FS 632 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se------~~e~~vG~~~~~vr~l--------------------F~ 632 (1036)
...+||+||||||||++|+++|..++.|++.++|.. ++..+.+.....+.+- +.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 356999999999999999999999999999998764 3322322211111111 11
Q ss_pred HhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------------cCCCCeEEEEecCCCc---
Q psy5440 633 MARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--------------NTTTNVVVLAATNRVD--- 695 (1036)
Q Consensus 633 ~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--------------~~~~~ViVIaaTN~pd--- 695 (1036)
.|.. .+.+|+|||||.+. . .+.+.|+..|+.- ..+.++.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~-----------~---~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSK-----------P---ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHH-cCCEEEEcchhhCC-----------H---HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 2222 23699999999863 2 2344444444321 1224678999999763
Q ss_pred --cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHH---HHh-h-cCCCCCHHHHHHHHHHHHHHH
Q psy5440 696 --VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSR---KLA-A-LTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 696 --~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~---~LA-~-~T~G~SgaDL~~LvneAal~A 768 (1036)
.++++|++ || ..+.++.|+.++-.+|++.+.. .... ..+.+++ .+- . .....+ ++.++.-|...+
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~ 237 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-VAED-SAATIVRLVREFRASGDEITSG---LRASLMIAEVAT 237 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHH
Confidence 57899999 98 6799999999999999998863 2211 1111111 111 0 111223 333333333333
Q ss_pred HHhcCCcccHHHHHHHHHHHHcC
Q psy5440 769 ARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi~g 791 (1036)
....+..++.+||.+....++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 238 QQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HcCCCCCCCcHHHHHHHHHHhcc
Confidence 34456678888888888777653
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2.2e-12 Score=152.08 Aligned_cols=210 Identities=18% Similarity=0.212 Sum_probs=140.5
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE---------EE
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI---------TV 610 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi---------~I 610 (1036)
....+|+||+|++.++..|...+.. .++|..+||+||||+|||++|+++|+.+.++-- ..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3457899999999999988777643 245778999999999999999999998754310 01
Q ss_pred echhhhhh-------hcc---CchhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh
Q psy5440 611 SGSEFLEM-------FVG---VGPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676 (1036)
Q Consensus 611 s~se~~e~-------~vG---~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em 676 (1036)
+|..+... +.| .+-..++.+-+.+. .....||+|||+|.+.. ...|.|+..|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~LLk~l 145 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSLLKTL 145 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHHHHHh
Confidence 11111100 111 12234554443332 23457999999998832 3467888888
Q ss_pred hcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHH
Q psy5440 677 DGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 677 Dg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaD 756 (1036)
+. .+..+++|.+||.+..|.++|++ |+ ..+.+..++.++....++..+...+..++.+ .+..|+..+.| +.++
T Consensus 146 Ee--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g-dlr~ 218 (451)
T PRK06305 146 EE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG-SLRD 218 (451)
T ss_pred hc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 74 44577888888888999999998 77 4689999999999998888776544445444 44667777755 4455
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+.+++...... . ...|+.+++++++
T Consensus 219 a~~~Lekl~~~---~-~~~It~~~V~~l~ 243 (451)
T PRK06305 219 AESLYDYVVGL---F-PKSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHh---c-cCCcCHHHHHHHH
Confidence 55555443322 2 2448888776655
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.44 E-value=5.9e-12 Score=136.50 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=130.9
Q ss_pred CCCccccccc-c-ChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 540 DIGVRFKDVA-G-CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~-G-~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
....+|++.+ | ...+...+..+.. .+ .+..++|+||||||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456788888 4 3444444444332 11 12479999999999999999999876 34566666655
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCC-eEEEEecCC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTN-VVVLAATNR 693 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~-ViVIaaTN~ 693 (1036)
+... ..++++.... ..+|+|||||.+.. .......+..++..+- .+.+ .+++++++.
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 3221 1122222222 25899999999842 1222333433333321 2333 355556666
Q ss_pred Ccc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 694 VDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 694 pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
|.. +.|.|++ |+. ..+.+.+|+.++|.++++.++......++ ++.++.|++..+| +.+.+.++++... .+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~-~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~ 216 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP-EDVGRFLLKRLDR-EMRTLFMTLDQLD-RA 216 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhhcC-CHHHHHHHHHHHH-HH
Confidence 665 5799999 875 78899999999999999987665443444 4455788887765 6678888887643 23
Q ss_pred HHhcCCcccHHHHHHHH
Q psy5440 769 ARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Ai 785 (1036)
.......||...+++++
T Consensus 217 ~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 217 SITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHhcCCCCCHHHHHHHH
Confidence 33335669988887765
No 127
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.8e-12 Score=150.89 Aligned_cols=214 Identities=14% Similarity=0.194 Sum_probs=143.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE----------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT---------- 609 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~---------- 609 (1036)
....+|++|+|++.+++.|...+.. .++|..+||+||||+|||++|+++|+++.+.-..
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 3457899999999999988776643 3567789999999999999999999998763100
Q ss_pred Eec------hhhhh-------hhcc---CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHH
Q psy5440 610 VSG------SEFLE-------MFVG---VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTL 669 (1036)
Q Consensus 610 Is~------se~~e-------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~L 669 (1036)
-.| ..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.. ...
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------~~~ 144 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------AAF 144 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------HHH
Confidence 011 11110 0111 123566666655532 1236999999998832 245
Q ss_pred HHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcC
Q psy5440 670 NQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALT 749 (1036)
Q Consensus 670 nqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T 749 (1036)
+.|+..++. .+..+++|.+|+.+..|-+++.+ |+. .+.+.+++.++....++..++.....++.+ .++.|+..+
T Consensus 145 ~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l~~~s 218 (397)
T PRK14955 145 NAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLIGRKA 218 (397)
T ss_pred HHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 677777763 44566777777777888888887 664 688999999998888888776544445544 446777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hcCCcccHHHHHHHH
Q psy5440 750 PGFTGADIANVCNEAALIAAR-DLHTTIVMKHFEQAI 785 (1036)
Q Consensus 750 ~G~SgaDL~~LvneAal~A~r-~~~~~It~~d~~~Ai 785 (1036)
.| +.+.+.+.++.+...+.. .....|+.+++++++
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 65 556666666655544322 234578888887665
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.7e-12 Score=136.34 Aligned_cols=194 Identities=22% Similarity=0.333 Sum_probs=138.5
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
...+.+++++|+++.|+.|.+-...+.. ..+..++||+|++|||||+++||+..+. |..++.|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4468999999999999999776655322 3456789999999999999999999866 6788888877764
Q ss_pred hhhccCchhHHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--cCCCCeEEEEecCC
Q psy5440 617 EMFVGVGPSRVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--NTTTNVVVLAATNR 693 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~~~~~ViVIaaTN~ 693 (1036)
. +.++++..+. ..+-|||+|++- + ...+... ..|-..|||- ..+.||+|.||+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F---------e~~d~~y---k~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F---------EEGDTEY---KALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C---------CCCcHHH---HHHHHHhcCccccCCCcEEEEEecch
Confidence 3 4456665553 346899999863 1 1223333 4444445653 45679999999997
Q ss_pred CccccHHhhC----------C-----------CCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhH---HHHHhhcC
Q psy5440 694 VDVLDKALLR----------P-----------GRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDL---SRKLAALT 749 (1036)
Q Consensus 694 pd~LDpALlR----------p-----------GRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l---~~~LA~~T 749 (1036)
-..+.+.... | -||...|.|.+||.++-++|++.++......++.+.+ +...|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 5544332211 1 2999999999999999999999999866655554322 23456666
Q ss_pred CCCCHHHHHHHHHH
Q psy5440 750 PGFTGADIANVCNE 763 (1036)
Q Consensus 750 ~G~SgaDL~~Lvne 763 (1036)
.|.||+-..+.++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 77888877777654
No 129
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2.5e-12 Score=159.30 Aligned_cols=164 Identities=22% Similarity=0.335 Sum_probs=117.6
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCc-eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-----hhc
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK-GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-----MFV 620 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pk-GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-----~~v 620 (1036)
.|+|++++++.|.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+|+.++|+++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998876432100 012244 5899999999999999999999999999999998864 233
Q ss_pred cCchhHH----HHHH-HHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--c-------CCCCeE
Q psy5440 621 GVGPSRV----RDMF-SMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--N-------TTTNVV 686 (1036)
Q Consensus 621 G~~~~~v----r~lF-~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~-------~~~~Vi 686 (1036)
|.....+ ...+ +..+.+..|||||||||.+.+ .+.+.||..||.- . .-.+++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 3221111 1223 333445559999999999842 3566666666631 1 114789
Q ss_pred EEEecCCC-------------------------ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 687 VLAATNRV-------------------------DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 687 VIaaTN~p-------------------------d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
+|+|||.- ..+.|.|+. |+|..|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 125577777 9999999999999999999988775
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=2.7e-12 Score=151.43 Aligned_cols=192 Identities=15% Similarity=0.234 Sum_probs=130.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechhhhhhhccCchh---HHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSEFLEMFVGVGPS---RVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se~~e~~vG~~~~---~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
..+++|||++|+|||+|++|+++++ +..++++++.+|...+...... .+..+.+.. ..+.+|+||||+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999854 5788999999988765432211 122222222 24569999999988
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc---cccHHhhCCCCcc--eEEEecCCChhhHHHHH
Q psy5440 651 GRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD---VLDKALLRPGRFD--RQIFVPAPDIKGRASIF 725 (1036)
Q Consensus 651 ~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd---~LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL 725 (1036)
..+ ......+-.++..+ ......+||.+...|. .+++.|.+ ||. ..+.+.+|+.++|.+||
T Consensus 219 ~~k---------~~~~e~lf~l~N~~---~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNF---IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC---------HHHHHHHHHHHHHH---HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 422 12222333333332 2233445555444454 45788888 885 56788999999999999
Q ss_pred HHhcCCCCC--CCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHH
Q psy5440 726 KVHLKPLKT--DLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL-HTTIVMKHFEQAIERV 788 (1036)
Q Consensus 726 ~~~L~~l~~--~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~-~~~It~~d~~~Aierv 788 (1036)
+.++..... .++ ++.+..|+....| +.+.|.++|+.+...+.... ...|+.+.+.+++..+
T Consensus 285 ~~~~~~~gl~~~l~-~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 285 KKEIKNQNIKQEVT-EEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHhcCCCCCCC-HHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 999875432 243 4566889988876 77999999998775555442 3689999999988764
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=1.6e-12 Score=161.84 Aligned_cols=197 Identities=26% Similarity=0.366 Sum_probs=131.3
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh-----hc
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-----FV 620 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~-----~v 620 (1036)
.|+|++++++.|.+.+...+..-. .-..|.+ +||+||||||||++|+++|..++.+++.++++++.+. ..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 489999999999888765321100 0112554 7999999999999999999999999999999998652 22
Q ss_pred cCch-----hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------CCCCeE
Q psy5440 621 GVGP-----SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---------TTTNVV 686 (1036)
Q Consensus 621 G~~~-----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---------~~~~Vi 686 (1036)
|... .....+.+..+.+..+||+|||||.+.+ ...+.||..||... .-.+++
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 2211 1122334444555668999999998732 35566666666421 123688
Q ss_pred EEEecCCCc-------------------------cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC--------
Q psy5440 687 VLAATNRVD-------------------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-------- 733 (1036)
Q Consensus 687 VIaaTN~pd-------------------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-------- 733 (1036)
+|+|||... .+.|.|+. |||..|.|.+.+.++..+|++..+..+.
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998632 24567766 9999999999999999999998876321
Q ss_pred -CCCChhhHHHHHhhc--CCCCCHHHHHHHHHHH
Q psy5440 734 -TDLDRDDLSRKLAAL--TPGFTGADIANVCNEA 764 (1036)
Q Consensus 734 -~~l~~~~l~~~LA~~--T~G~SgaDL~~LvneA 764 (1036)
..++ +...+.|+.. .+.+-.+.|+++++..
T Consensus 675 ~l~i~-~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 675 KLELT-DDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eEEeC-HHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 1122 2333445542 3444455666655543
No 132
>PRK08727 hypothetical protein; Validated
Probab=99.43 E-value=7e-12 Score=135.78 Aligned_cols=210 Identities=18% Similarity=0.195 Sum_probs=130.2
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
....+|++.++.+.- .+ ..+..+.. + .....++|+||+|||||+|++|++.++ +...++++..++.
T Consensus 13 ~~~~~f~~f~~~~~n--~~-~~~~~~~~-------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LL-AQLQALAA-------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CCcCChhhccCCcHH--HH-HHHHHHHh-------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 456789998866542 12 11111110 1 123459999999999999999997764 6677788776644
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
. .+.+.++... ...+|+|||+|.+... ......+-.++..+. .+..-+|+.+.+.|..
T Consensus 82 ~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 82 G--------RLRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred h--------hHHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 3 2334444443 3359999999988422 122233334444432 2222344444456664
Q ss_pred c---cHHhhCCCCc--ceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 697 L---DKALLRPGRF--DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 697 L---DpALlRpGRF--dr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
+ +++|++ || ...+.+++|+.++|.+|++.++......++. +.+..|+..++| +.+.+.++++.....+...
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~-e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDE-AAIDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 4 799998 86 5678999999999999999877544434544 445678887764 4455555565543334433
Q ss_pred cCCcccHHHHHHHHHH
Q psy5440 772 LHTTIVMKHFEQAIER 787 (1036)
Q Consensus 772 ~~~~It~~d~~~Aier 787 (1036)
...||...+.+++..
T Consensus 216 -~~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 -KRRVTVPFLRRVLEE 230 (233)
T ss_pred -CCCCCHHHHHHHHhh
Confidence 457898888877653
No 133
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=4.7e-12 Score=140.30 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=80.9
Q ss_pred eEEEEecCC------------CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 685 VVVLAATNR------------VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 685 ViVIaaTN~------------pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
-+||.|||+ |.-++..|+. |+ ..|...+++.++..+|++..++.....++.+. ++.|+.....-
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~A-le~L~~ig~et 396 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDA-LEYLTDIGEET 396 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHH-HHHHHhhchhh
Confidence 477778885 6678888887 66 45777889999999999999886665566554 46788877777
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
|-+-..+|+.-|.+.|.++++..|..+|+++|.+-.
T Consensus 397 SLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 397 SLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred hHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 888888999999999999999999999999987654
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.8e-12 Score=152.81 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=141.7
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE----Ee---ch
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT----VS---GS 613 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~----Is---~s 613 (1036)
...+|++|+|+++++..|...+..- +.+.++||+||+|||||++|+++|+.+++.... -. |.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 4578999999999999998877641 345679999999999999999999998763110 01 11
Q ss_pred -----------hhhh--hhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh
Q psy5440 614 -----------EFLE--MFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676 (1036)
Q Consensus 614 -----------e~~e--~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em 676 (1036)
++.+ .....+...+|++.+.+... ...||+|||+|.+. ....|.||..|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLLK~L 145 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALLKTL 145 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHHHHH
Confidence 1111 11123446788888776532 23699999999883 14568888888
Q ss_pred hcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHH
Q psy5440 677 DGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 677 Dg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaD 756 (1036)
+. ....+++|++|+.++.|-++|++ |+ ..+.|..++.++....+...+......++.+. +..+++.+.| +.++
T Consensus 146 Ee--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G-~lr~ 218 (620)
T PRK14948 146 EE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG-GLRD 218 (620)
T ss_pred hc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-CHHH
Confidence 83 55678888888889999999998 77 55888888888877777776665444454444 5678877766 3466
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHH
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQ 783 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~ 783 (1036)
+.++++...+. ...|+.+++.+
T Consensus 219 A~~lLeklsL~-----~~~It~e~V~~ 240 (620)
T PRK14948 219 AESLLDQLSLL-----PGPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHhc-----cCCCCHHHHHH
Confidence 66666543322 23466655543
No 135
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=1e-11 Score=139.00 Aligned_cols=204 Identities=18% Similarity=0.198 Sum_probs=134.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEech
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGS 613 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~s 613 (1036)
...+.+|+|++|.+++++.|...+.. . . ..++||+||||||||++|+++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE---K--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34457899999999999988877642 1 1 12589999999999999999999873 345556554
Q ss_pred hhhhhhccCchhHHHHHHHHhhc------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEE
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARK------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVV 687 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViV 687 (1036)
+-. ....+++.+..... ..+.+|+|||+|.+.. ...+.|+..++... ..+.+
T Consensus 78 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~l 135 (319)
T PRK00440 78 DER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYS--QNTRF 135 (319)
T ss_pred ccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCC--CCCeE
Confidence 321 11122222222211 2346999999998832 12344555555432 34566
Q ss_pred EEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 688 LAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 688 IaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
|.++|.+..+.+++.+ |+. .+.+++++.++...+++.++......++.+. +..++..+.| +.+.+.+.+..++.
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~a-l~~l~~~~~g-d~r~~~~~l~~~~~- 209 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDA-LEAIYYVSEG-DMRKAINALQAAAA- 209 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHHHHHHHH-
Confidence 6677877888888887 665 5899999999999999999876655565544 4677777654 33444444443332
Q ss_pred HHHhcCCcccHHHHHHHHH
Q psy5440 768 AARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 768 A~r~~~~~It~~d~~~Aie 786 (1036)
....||.+++.+++.
T Consensus 210 ----~~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 ----TGKEVTEEAVYKITG 224 (319)
T ss_pred ----cCCCCCHHHHHHHhC
Confidence 246799999887764
No 136
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=4.4e-12 Score=143.86 Aligned_cols=221 Identities=19% Similarity=0.247 Sum_probs=137.4
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEE--Eec
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------NVPFIT--VSG 612 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~--Is~ 612 (1036)
...|++|+|++++++.|.-.+- ++. -.++||+||||||||++|+++|+-+ ++|+-. +.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4679999999999987753211 110 1469999999999999999999987 332211 111
Q ss_pred -hh---------------hhhhhccCchhHHHH--HHHHh-------------hcCCCeEEEEcCchhhhhcCCCCCCCC
Q psy5440 613 -SE---------------FLEMFVGVGPSRVRD--MFSMA-------------RKHAPCILFIDEIDAVGRKRGGRNFGG 661 (1036)
Q Consensus 613 -se---------------~~e~~vG~~~~~vr~--lF~~A-------------r~~aP~ILfIDEIDaL~~~r~~~~~~~ 661 (1036)
.+ |.....+.+..++-. .|+.+ ......+||||||+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------- 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------- 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH---------
Confidence 01 111111111111110 00111 011125999999998732
Q ss_pred ChhHHHHHHHHHHHhhcCc-----------CCCCeEEEEecCCCc-cccHHhhCCCCcceEEEecCCCh-hhHHHHHHHh
Q psy5440 662 HSEQENTLNQLLVEMDGFN-----------TTTNVVVLAATNRVD-VLDKALLRPGRFDRQIFVPAPDI-KGRASIFKVH 728 (1036)
Q Consensus 662 ~~e~~~~LnqLL~emDg~~-----------~~~~ViVIaaTN~pd-~LDpALlRpGRFdr~I~i~~Pd~-eeR~~IL~~~ 728 (1036)
.+.+.|+..|+.-. .+.++++|+++|..+ .++++|+. ||...+.++.|.. ++|.+|++..
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 45566666664321 245789999999655 68999999 9999999998866 9999999875
Q ss_pred cCCCC--C-------------------------CCC-hhhHHHH---HhhcCC-CCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 729 LKPLK--T-------------------------DLD-RDDLSRK---LAALTP-GFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 729 L~~l~--~-------------------------~l~-~~~l~~~---LA~~T~-G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
..... . .+. .+.+.+. ++..+. .-..++|. +++.|...|+.++++.|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 32100 0 000 1222222 222222 12345666 88999999999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy5440 777 VMKHFEQAIERVVAG 791 (1036)
Q Consensus 777 t~~d~~~Aiervi~g 791 (1036)
+.+|+..+..-++..
T Consensus 295 ~~~Di~~~~~~vl~h 309 (334)
T PRK13407 295 GRSHLRSVATMALSH 309 (334)
T ss_pred CHHHHHHHHHHhhhh
Confidence 999999888666543
No 137
>PRK05642 DNA replication initiation factor; Validated
Probab=99.40 E-value=1e-11 Score=134.68 Aligned_cols=212 Identities=12% Similarity=0.158 Sum_probs=134.8
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
.+..+|++.+.... ....+.+..+.. ..+......++|+||+|||||+|++|+++++ +..+++++..++.
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~-----~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCE-----ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhh-----ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 34578998873321 223333332211 0011124678999999999999999998754 5788899988876
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
... ..+.+..+.. .+|+|||++.+..+ ......+-.++ +.+..+...+||+++..|..
T Consensus 86 ~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~---n~~~~~g~~ilits~~~p~~ 143 (234)
T PRK05642 86 DRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLF---NRLRDSGRRLLLAASKSPRE 143 (234)
T ss_pred hhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHH---HHHHhcCCEEEEeCCCCHHH
Confidence 531 2233333322 48999999988422 11122233333 33334556777777766653
Q ss_pred ---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 697 ---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 697 ---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
+.|.|++ ||. ..+.+..|+.++|..|++..+......++ ++..+.|++..++ +.+.+.++++.-.. +...
T Consensus 144 l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~-~ev~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~ 218 (234)
T PRK05642 144 LPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT-DEVGHFILTRGTR-SMSALFDLLERLDQ-ASLQ 218 (234)
T ss_pred cCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCC-CHHHHHHHHHHHHH-HHHH
Confidence 3688988 774 66778999999999999966654443344 4556788877765 67888888876543 3333
Q ss_pred cCCcccHHHHHHHH
Q psy5440 772 LHTTIVMKHFEQAI 785 (1036)
Q Consensus 772 ~~~~It~~d~~~Ai 785 (1036)
....||..-+++++
T Consensus 219 ~~~~it~~~~~~~L 232 (234)
T PRK05642 219 AQRKLTIPFLKETL 232 (234)
T ss_pred cCCcCCHHHHHHHh
Confidence 45678988777765
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1e-11 Score=150.69 Aligned_cols=213 Identities=15% Similarity=0.232 Sum_probs=142.8
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE----------E
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT----------V 610 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~----------I 610 (1036)
...+|+||+|++.++..|...+.. .+++.++||+||+|||||++|+++|+.+++.--. -
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 457899999999999988776533 3567789999999999999999999998773100 0
Q ss_pred e------chhhhh-------hhcc---CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHH
Q psy5440 611 S------GSEFLE-------MFVG---VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLN 670 (1036)
Q Consensus 611 s------~se~~e-------~~vG---~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Ln 670 (1036)
. |..+.. .+.+ .+...++++.+.+.. ...-|++|||+|.+.. ...|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------~a~n 145 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------AAFN 145 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------------HHHH
Confidence 1 111110 0111 123566776665532 2236999999998831 3467
Q ss_pred HHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCC
Q psy5440 671 QLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTP 750 (1036)
Q Consensus 671 qLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~ 750 (1036)
.||..|+. ....+++|.+|+.+..|-+++++ |. ..+.+..++.++....+...+......++.+ .++.|+..+.
T Consensus 146 aLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La~~s~ 219 (620)
T PRK14954 146 AFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIARKAQ 219 (620)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhC
Confidence 78888774 34566777777778889899988 65 5799999999998888887776544445544 4467787776
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hcCCcccHHHHHHHH
Q psy5440 751 GFTGADIANVCNEAALIAAR-DLHTTIVMKHFEQAI 785 (1036)
Q Consensus 751 G~SgaDL~~LvneAal~A~r-~~~~~It~~d~~~Ai 785 (1036)
| +.+++.+.++.....+.- .....|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 556666666554433311 224568887776655
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.3e-11 Score=150.25 Aligned_cols=209 Identities=17% Similarity=0.218 Sum_probs=141.7
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE-----EEe-c-
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI-----TVS-G- 612 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi-----~Is-~- 612 (1036)
....+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++..- .++ |
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3457899999999999998877754 234667899999999999999999998865321 000 1
Q ss_pred --hhhhh--------hh--ccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh
Q psy5440 613 --SEFLE--------MF--VGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676 (1036)
Q Consensus 613 --se~~e--------~~--vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em 676 (1036)
..+.. .. ...+...++++.+.+.. ....||+|||+|.+.. ..+|.||..|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~L 144 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNALLKTL 144 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHHHHHHH
Confidence 11110 00 01223445665554432 2246999999998831 4567788887
Q ss_pred hcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHH
Q psy5440 677 DGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 677 Dg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaD 756 (1036)
+. ....+++|.+|+..+.+.+.+++ |+. .+.|..++..+...++...+......++.+ .+..|+..+.| +.++
T Consensus 145 Ee--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-dlr~ 217 (585)
T PRK14950 145 EE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-SMRD 217 (585)
T ss_pred hc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 74 34567777777878888888887 664 588999999999988888876555445544 45677877766 6777
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+.+.++..+.+ ....|+.++++.+
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 77777654332 2446888877654
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.38 E-value=1.1e-11 Score=151.17 Aligned_cols=217 Identities=23% Similarity=0.315 Sum_probs=135.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
..+|++++|++++...+...+. . ..+..++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4689999999998887654431 1 235679999999999999999998755 46899999
Q ss_pred chhhh-------hhhccCchhH----HHHHHHH----------hhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHH
Q psy5440 612 GSEFL-------EMFVGVGPSR----VRDMFSM----------ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLN 670 (1036)
Q Consensus 612 ~se~~-------e~~vG~~~~~----vr~lF~~----------Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Ln 670 (1036)
|..+. ....+..... .+..++. .......+|||||++.+.. .....+.
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~Ll 286 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQNKLL 286 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHHHHH
Confidence 97652 1112211110 1111111 0112346999999998732 1122222
Q ss_pred HHHHHhh-----------------------cCcCCCCeEEEEec-CCCccccHHhhCCCCcceEEEecCCChhhHHHHHH
Q psy5440 671 QLLVEMD-----------------------GFNTTTNVVVLAAT-NRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFK 726 (1036)
Q Consensus 671 qLL~emD-----------------------g~~~~~~ViVIaaT-N~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~ 726 (1036)
.++..-. .-....++++|++| +.++.++++|++ ||. .+.+++++.+++..|++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHH
Confidence 2222100 00112346666654 568889999998 886 57889999999999999
Q ss_pred HhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh--------cCCcccHHHHHHHHHH
Q psy5440 727 VHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD--------LHTTIVMKHFEQAIER 787 (1036)
Q Consensus 727 ~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~--------~~~~It~~d~~~Aier 787 (1036)
.++......++ +..++.|+..+. .++...+++..+...++.+ ....|+.+|+++++..
T Consensus 364 ~~a~~~~v~ls-~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 364 NAAEKINVHLA-AGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHcCCCCC-HHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99876543444 445567776653 4555555555554333221 1236889998888764
No 141
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.6e-11 Score=139.40 Aligned_cols=216 Identities=21% Similarity=0.302 Sum_probs=152.1
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-----eEEEechhhhhhh---
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-----FITVSGSEFLEMF--- 619 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-----fi~Is~se~~e~~--- 619 (1036)
+.+-++..+.+..++.... ....|.++++|||||||||.+++.+++++.-+ +++|||-...+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 8899988888877754422 23346679999999999999999999988443 8999997654432
Q ss_pred ------------ccCchhH-HHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCe
Q psy5440 620 ------------VGVGPSR-VRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV 685 (1036)
Q Consensus 620 ------------vG~~~~~-vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~V 685 (1036)
.|..... ...+++... .....||+|||+|.|..+.+ .+|..|+...+.. ...|
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeE
Confidence 1222222 222222222 24567999999999975321 5677777665543 5678
Q ss_pred EEEEecCCCc---cccHHhhCCCCc-ceEEEecCCChhhHHHHHHHhcCC-CCCCCChhhHHHHH---hhcCCCCCHHHH
Q psy5440 686 VVLAATNRVD---VLDKALLRPGRF-DRQIFVPAPDIKGRASIFKVHLKP-LKTDLDRDDLSRKL---AALTPGFTGADI 757 (1036)
Q Consensus 686 iVIaaTN~pd---~LDpALlRpGRF-dr~I~i~~Pd~eeR~~IL~~~L~~-l~~~l~~~~l~~~L---A~~T~G~SgaDL 757 (1036)
.+|+.+|..+ .||+.+.+ +| ...|.|++++.++...|++..... +....-.+..++.+ +....| ..+-.
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~a 234 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKA 234 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHH
Confidence 9999999764 78888887 44 345899999999999999988763 33222223333333 344444 55666
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 758 ANVCNEAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 758 ~~LvneAal~A~r~~~~~It~~d~~~Aier 787 (1036)
..+|+.|+..|.+++...++.+++..|.+.
T Consensus 235 idilr~A~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 235 IDILRRAGEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 688999999999999999999999999544
No 142
>KOG0989|consensus
Probab=99.38 E-value=7e-12 Score=137.11 Aligned_cols=190 Identities=19% Similarity=0.222 Sum_probs=131.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC------eEEEec
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP------FITVSG 612 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------fi~Is~ 612 (1036)
....-+|+|++|++++.+.|...+.. ++ -.++|||||||||||+.|+++|+++++| +...+.
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 34567899999999999999876644 21 2358999999999999999999999762 334455
Q ss_pred hhhhhhhccCchhHHHHHHHHhhcC---------CC-eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC
Q psy5440 613 SEFLEMFVGVGPSRVRDMFSMARKH---------AP-CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT 682 (1036)
Q Consensus 613 se~~e~~vG~~~~~vr~lF~~Ar~~---------aP-~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~ 682 (1036)
|+..... .....+. -|+..... .| -||+|||.|.+.. .+.+.|..-|+.+ .
T Consensus 97 SderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 97 SDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF--S 157 (346)
T ss_pred ccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--c
Confidence 5544322 1112221 13322211 12 6999999999842 4567788888863 4
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvn 762 (1036)
..+++|..||..+.|...+.+ |+. .+.|++...+.....|+........+++.+++ +.++..+.| +-++....+.
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al-~~I~~~S~G-dLR~Ait~Lq 232 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDAL-KLIAKISDG-DLRRAITTLQ 232 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcCC-cHHHHHHHHH
Confidence 577889999999999999998 774 47788777778888888888776766766554 678877765 2233333343
Q ss_pred HH
Q psy5440 763 EA 764 (1036)
Q Consensus 763 eA 764 (1036)
.+
T Consensus 233 sl 234 (346)
T KOG0989|consen 233 SL 234 (346)
T ss_pred Hh
Confidence 33
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=4.9e-12 Score=142.08 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=101.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh--hccCchhH----------HHHHHHHhhcCCCeEEEEcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM--FVGVGPSR----------VRDMFSMARKHAPCILFIDE 646 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~--~vG~~~~~----------vr~lF~~Ar~~aP~ILfIDE 646 (1036)
.+++||.||||||||++|+++|.+++.|++.+++...+.. .+|...-. ....+..|.+ .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998876654 34432111 1122333433 468999999
Q ss_pred chhhhhcCCCCCCCCChhHHHHHHHHHHH-----hh----cCcCCCCeEEEEecCCCc------------cccHHhhCCC
Q psy5440 647 IDAVGRKRGGRNFGGHSEQENTLNQLLVE-----MD----GFNTTTNVVVLAATNRVD------------VLDKALLRPG 705 (1036)
Q Consensus 647 IDaL~~~r~~~~~~~~~e~~~~LnqLL~e-----mD----g~~~~~~ViVIaaTN~pd------------~LDpALlRpG 705 (1036)
||..- .+....|+.+|+. ++ .+..+.++.||||+|..+ .|++|++.
T Consensus 143 in~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 99762 2333556666652 11 122345789999999754 47899999
Q ss_pred CcceEEEecCCChhhHHHHHHHhcCC
Q psy5440 706 RFDRQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 706 RFdr~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
||-..+.++.|+.+.-.+|+......
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999877643
No 144
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.37 E-value=5.6e-12 Score=148.78 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=148.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------eEEE-ec
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------FITV-SG 612 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------fi~I-s~ 612 (1036)
...+|+||+|++.+...|.+.+..= ++..+.||+||.|||||++||.+|..++|. +..+ +|
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 3468999999999999999888763 345567999999999999999999988764 2211 11
Q ss_pred h--------hhhhh--hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 S--------EFLEM--FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 s--------e~~e~--~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
- |++++ -...+-..+|++.+.+.- ...-|.+|||+|.|. .+..|.||..++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLE- 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLE- 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccc-
Confidence 1 22211 112244667888777642 234699999999983 367899998887
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.++.+|++|.||..+..+++.+++ |+ .++.+..-+.++....|...+.......+.+. +..+|+...| |.+|..
T Consensus 145 -EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a-L~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 -EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDA-LSLIARAAEG-SLRDAL 218 (515)
T ss_pred -cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHcCC-ChhhHH
Confidence 577899999999999999999999 77 34788889999999999988886665555444 4678888887 679999
Q ss_pred HHHHHHHHH
Q psy5440 759 NVCNEAALI 767 (1036)
Q Consensus 759 ~LvneAal~ 767 (1036)
.+++.|...
T Consensus 219 slLDq~i~~ 227 (515)
T COG2812 219 SLLDQAIAF 227 (515)
T ss_pred HHHHHHHHc
Confidence 999987654
No 145
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-12 Score=152.79 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=145.1
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
....+|+||+|.+++..++.+.+... ++.+..|||.|.+||||.++|++|.+.. +.||+.+||+.+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34578999999999999988887664 5567789999999999999999999865 6799999998665
Q ss_pred hh-------------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh--hcCc-
Q psy5440 617 EM-------------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM--DGFN- 680 (1036)
Q Consensus 617 e~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em--Dg~~- 680 (1036)
+. |.|....--..+|+.|... -||+|||..+- -....-|-..|++= ..+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC-----------HHHHHHHHHHHhhceEEecCC
Confidence 42 2332222134577777655 79999997762 11222233333321 1111
Q ss_pred ---CCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCC-CChhhHHHHHhhcCCCCCHHH
Q psy5440 681 ---TTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTD-LDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 681 ---~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~-l~~~~l~~~LA~~T~G~SgaD 756 (1036)
.+-+|.||||||+.- ..+...|||-..+++ |...+..++++++.. -|...+++.+-....---+.+
T Consensus 375 t~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYY-------RLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~ 444 (560)
T COG3829 375 TKPIPVDVRIIAATNRNL---EKMIAEGTFREDLYY-------RLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN 444 (560)
T ss_pred CCceeeEEEEEeccCcCH---HHHHhcCcchhhhee-------eeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCC
Confidence 123699999999754 455667999888888 888888888887733 344444443332211011122
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
+..+-. .++.++.++.|+-+.++++.++++.+.
T Consensus 445 v~~ls~-~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 445 VKGLSP-DALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred cccCCH-HHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 222222 244557788999999999999999875
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=1.7e-11 Score=139.56 Aligned_cols=222 Identities=20% Similarity=0.228 Sum_probs=141.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-------CCeEEEe--
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-------VPFITVS-- 611 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-------vpfi~Is-- 611 (1036)
....|++|+|++++|..|.-. +.+|. ..|+||.||+|||||++||++++.+. .||. ..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~---~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILN---VIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHh---ccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 456899999999999888533 23332 25899999999999999999987552 3443 11
Q ss_pred -----chhhhh-------------------hhccCchhH------HHHHHHHhh---------cCCCeEEEEcCchhhhh
Q psy5440 612 -----GSEFLE-------------------MFVGVGPSR------VRDMFSMAR---------KHAPCILFIDEIDAVGR 652 (1036)
Q Consensus 612 -----~se~~e-------------------~~vG~~~~~------vr~lF~~Ar---------~~aP~ILfIDEIDaL~~ 652 (1036)
|+++.. .-.+.+..+ +...|.... +....+||||||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 011110 011222222 122222221 11236999999998842
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhc---------C--cCCCCeEEEEecCCCc-cccHHhhCCCCcceEEEecCCC-hh
Q psy5440 653 KRGGRNFGGHSEQENTLNQLLVEMDG---------F--NTTTNVVVLAATNRVD-VLDKALLRPGRFDRQIFVPAPD-IK 719 (1036)
Q Consensus 653 ~r~~~~~~~~~e~~~~LnqLL~emDg---------~--~~~~~ViVIaaTN~pd-~LDpALlRpGRFdr~I~i~~Pd-~e 719 (1036)
.+.+.|+..|+. . ..+.++++|++.|..+ .+.++|+. ||...+.+..|+ .+
T Consensus 159 --------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 --------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred --------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 344455555532 1 1235788999888665 69999999 999999999997 59
Q ss_pred hHHHHHHHhcCCCCC---------------------------CCC-hhhHHH---HHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 720 GRASIFKVHLKPLKT---------------------------DLD-RDDLSR---KLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 720 eR~~IL~~~L~~l~~---------------------------~l~-~~~l~~---~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
.|.+|++........ .+. .+.+.+ .++..+.--+.+--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 999999875431100 000 112222 2233333235565556777888888
Q ss_pred HHhcCCcccHHHHHHHHHHHHcC
Q psy5440 769 ARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi~g 791 (1036)
+-+++..|+.+|+..+..-++..
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999888765
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.34 E-value=3e-11 Score=129.35 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=124.5
Q ss_pred CCCccccccccCh---HHHHHHHHHHHHhcCchhHhhhcCCCC--ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 540 DIGVRFKDVAGCE---EAKVEIMEFVNFLKNPQQYIDLGAKIP--KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~e---eaK~eL~eiV~~Lk~p~~~~~lG~~~p--kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
.+..+|++++-.+ .+...+.++.+ .+ +. .| ..++||||||+|||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------cc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 4567899887655 34444444332 11 11 23 579999999999999999999988764332 111
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
.. .+.+ ....+|+|||||.+- . ..+-.++..+ ..+...+||+++..|
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~~----------~----~~lf~l~N~~---~e~g~~ilits~~~p 124 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENWQ----------E----PALLHIFNII---NEKQKYLLLTSSDKS 124 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccch----------H----HHHHHHHHHH---HhcCCEEEEEcCCCc
Confidence 10 1111 123689999999541 1 1222332222 245567888888766
Q ss_pred cc--ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy5440 695 DV--LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR 770 (1036)
Q Consensus 695 d~--LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r 770 (1036)
.. + |+|++ |+. ..+.+.+||.+.+..+++.++......++ ++.++.|+...++ +.+.+.++++.....+.
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~-~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~- 198 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTIS-RQIIDFLLVNLPR-EYSKIIEILENINYFAL- 198 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHccC-CHHHHHHHHHHHHHHHH-
Confidence 64 6 78888 775 36899999999999999988875443344 4455778877765 66778887776433333
Q ss_pred hcCCcccHHHHHHHH
Q psy5440 771 DLHTTIVMKHFEQAI 785 (1036)
Q Consensus 771 ~~~~~It~~d~~~Ai 785 (1036)
.....||...+.+++
T Consensus 199 ~~~~~it~~~~~~~l 213 (214)
T PRK06620 199 ISKRKITISLVKEVL 213 (214)
T ss_pred HcCCCCCHHHHHHHh
Confidence 344678988887765
No 148
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.6e-11 Score=131.80 Aligned_cols=198 Identities=22% Similarity=0.270 Sum_probs=119.9
Q ss_pred CCccccccc-cC--hHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEec
Q psy5440 541 IGVRFKDVA-GC--EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSG 612 (1036)
Q Consensus 541 ~~v~F~DV~-G~--eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~ 612 (1036)
++.||++.+ |- +.+...+..+. .++.. ....++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia---~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIA---ENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHH---HSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHH---hcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 457899986 42 22333333322 22221 12358999999999999999999875 577999999
Q ss_pred hhhhhhhccCch-hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 613 SEFLEMFVGVGP-SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 613 se~~e~~vG~~~-~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
.+|...+..... ..+.++.+..+ ...+|+||++|.+..+ . .+...|+..++.+......+||++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~---------~---~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK---------Q---RTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH---------H---HHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc---------h---HHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 998876533221 12222223332 3469999999999532 1 2233333333433455666777776
Q ss_pred CCCcc---ccHHhhCCCCcce--EEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 692 NRVDV---LDKALLRPGRFDR--QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 692 N~pd~---LDpALlRpGRFdr--~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
..|.. +++.|.+ ||.. .+.+..||.+.|.+|++..+......++. +.++.|++..++ +.++|..+++.-..
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~-~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPE-EVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-H-HHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 66664 5788888 7754 78899999999999999998766655554 445678877654 66778877776443
No 149
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.32 E-value=9.5e-13 Score=140.45 Aligned_cols=68 Identities=29% Similarity=0.420 Sum_probs=62.4
Q ss_pred CCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeeeec
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLHNI 208 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~~~ 208 (1036)
...++||+||.|++|||+-.+-|+.||+||++| |-+.||.||+||| ||||||||+|+|++ +.++..|.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~F---g~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vka 184 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERF---GDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKA 184 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHh---cccCcceeEEECCCCccHHHHHHHHhcccC--CceEEech
Confidence 346899999999999999999999999999999 8899999999999 99999999999998 66666554
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=4.6e-11 Score=135.85 Aligned_cols=220 Identities=20% Similarity=0.215 Sum_probs=138.6
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-------CCCeE--------
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------NVPFI-------- 608 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi-------- 608 (1036)
.|..|+|++++|..|.-. +-+|. ..++||.|+||||||++++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~---~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLN---VIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHH---hcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 489999999999877422 22221 3479999999999999999999866 33332
Q ss_pred -EEechh----------------hhhhhccCchhHHHHHHH--Hh-------------hcCCCeEEEEcCchhhhhcCCC
Q psy5440 609 -TVSGSE----------------FLEMFVGVGPSRVRDMFS--MA-------------RKHAPCILFIDEIDAVGRKRGG 656 (1036)
Q Consensus 609 -~Is~se----------------~~e~~vG~~~~~vr~lF~--~A-------------r~~aP~ILfIDEIDaL~~~r~~ 656 (1036)
.-+|.. |.++-.+..+.++-.-.. .+ .+....+||||||+.+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----
Confidence 111111 112112222222111111 00 012235999999998732
Q ss_pred CCCCCChhHHHHHHHHHHHhhcC-----------cCCCCeEEEEecCCCc-cccHHhhCCCCcceEEEecCCCh-hhHHH
Q psy5440 657 RNFGGHSEQENTLNQLLVEMDGF-----------NTTTNVVVLAATNRVD-VLDKALLRPGRFDRQIFVPAPDI-KGRAS 723 (1036)
Q Consensus 657 ~~~~~~~e~~~~LnqLL~emDg~-----------~~~~~ViVIaaTN~pd-~LDpALlRpGRFdr~I~i~~Pd~-eeR~~ 723 (1036)
.+.+.|+..|+.- ..+.++++|+++|..+ .|.++|+. ||...+.++.|+. ++|.+
T Consensus 146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 3445555555321 1234689999998655 79999999 9999999998875 88999
Q ss_pred HHHHhcCCC----C-----------------------CCCC-hhhHHH---HHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 724 IFKVHLKPL----K-----------------------TDLD-RDDLSR---KLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 724 IL~~~L~~l----~-----------------------~~l~-~~~l~~---~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
|++...... . ..+. .+.+.+ .++..+..-+.+--..+++-|...|+.++
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 998743210 0 0010 122222 23333333355666678888888999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy5440 773 HTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 773 ~~~It~~d~~~Aiervi~g 791 (1036)
+..|+.+|+..+..-++..
T Consensus 294 R~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 151
>KOG0727|consensus
Probab=99.30 E-value=2.3e-12 Score=136.82 Aligned_cols=71 Identities=24% Similarity=0.402 Sum_probs=66.5
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeeee
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLHN 207 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~~ 207 (1036)
.+++.|++.||+|+|-.|+|++|.|++ |.+.+.|+++|+.+|+||||||| ||||||||+|+.+. ..|+|..
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~firvv 221 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVV 221 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hheeeec
Confidence 567899999999999999999999999 99999999999999999999999 99999999999888 5677753
No 152
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=9.9e-11 Score=142.74 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=139.1
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE---------ec
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV---------SG 612 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I---------s~ 612 (1036)
..+|+||+|++++++.|...+.. .+.|..+|||||+|+|||++|+++|..+.|.-... +|
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 47899999999999988877653 34677899999999999999999999876421100 11
Q ss_pred hhhhhh-------hcc---CchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 613 SEFLEM-------FVG---VGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 613 se~~e~-------~vG---~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
..+.+. +-+ .+...++++.+.+... ..-|++|||+|.+.. ...|.||..|+.
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~naLLK~LEe 147 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNAFLKTLEE 147 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHHHHHHHhC
Confidence 111110 011 1234577777666432 125999999998831 356788888874
Q ss_pred CcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 679 FNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
.+..+++|.+|+.+..|-++|++ |+ ..+.|.+++.++....++..+...+..++.+ .+..|+..+.| +.+++.
T Consensus 148 --pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr~al 220 (614)
T PRK14971 148 --PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMRDAL 220 (614)
T ss_pred --CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 44567777777777889999998 66 4599999999999999988777655444443 34677777754 556666
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 759 NVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 759 ~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+++...+..+ +.. |+.+++.+.
T Consensus 221 ~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 221 SIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHHHhc---cCC-ccHHHHHHH
Confidence 6655543332 222 666555444
No 153
>KOG0729|consensus
Probab=99.28 E-value=4e-12 Score=135.80 Aligned_cols=70 Identities=27% Similarity=0.511 Sum_probs=65.1
Q ss_pred cCCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeee
Q psy5440 134 NSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLL 205 (1036)
Q Consensus 134 ~~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~ 205 (1036)
.++++.||+.||+|+.|..+.|+|+|+. |-+|++|..||+.+||||||||| |||++|||+|+.+. .-|+|
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfir 241 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIR 241 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEe
Confidence 4788999999999999999999999999 99999999999999999999999 99999999999887 34444
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=6.6e-11 Score=149.10 Aligned_cols=163 Identities=27% Similarity=0.335 Sum_probs=114.5
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh---
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~--- 618 (1036)
+.|+|++++.+.+.+.+...+..-.+ -..|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 36899999999998888663211000 123666 7999999999999999999988 458999999988653
Q ss_pred ---------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------
Q psy5440 619 ---------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------- 680 (1036)
Q Consensus 619 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------- 680 (1036)
|+|..... .+.+..+++..|||+|||||... . .+.+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEE
Confidence 33332221 13344455666999999998763 2 34555666665321
Q ss_pred CCCCeEEEEecCCCc-----------------------------cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC
Q psy5440 681 TTTNVVVLAATNRVD-----------------------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 681 ~~~~ViVIaaTN~pd-----------------------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
.-.+.+||.|||... .+.|+|+. |++ .|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 114689999998421 14467777 897 7899999999999999888754
No 155
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.9e-11 Score=146.49 Aligned_cols=160 Identities=26% Similarity=0.379 Sum_probs=121.5
Q ss_pred cccccChHHHHHHHHHHHH----hcCchhHhhhcCCCCc-eeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhhh
Q psy5440 546 KDVAGCEEAKVEIMEFVNF----LKNPQQYIDLGAKIPK-GAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFLE 617 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~----Lk~p~~~~~lG~~~pk-GvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~e 617 (1036)
+.|+|+++|...+.+.|.. |++|.+ |. ..||.||+|+|||.||+++|..+. ..++.+++|+|++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r--------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR--------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC--------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3589999999999988877 445544 44 467899999999999999999986 7999999999998
Q ss_pred h------------hccCchhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC---
Q psy5440 618 M------------FVGVGPSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--- 681 (1036)
Q Consensus 618 ~------------~vG~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--- 681 (1036)
. |+|..+. ..+.+|-+.. .|||++|||+.-. ..++|-||+.||.-.-
T Consensus 563 kHsVSrLIGaPPGYVGyeeG---G~LTEaVRr~PySViLlDEIEKAH--------------pdV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEG---GQLTEAVRRKPYSVILLDEIEKAH--------------PDVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HHHHHHHhCCCCCCceeccc---cchhHhhhcCCCeEEEechhhhcC--------------HHHHHHHHHHhcCCeeecC
Confidence 5 4554442 3344454444 5999999998753 2577888888874311
Q ss_pred ------CCCeEEEEecCCCc----------------------------cccHHhhCCCCcceEEEecCCChhhHHHHHHH
Q psy5440 682 ------TTNVVVLAATNRVD----------------------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 682 ------~~~ViVIaaTN~pd----------------------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
-.+.++|+|||--. ...|+++. |+|..|.|.+.+.+...+|+..
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHH
Confidence 13689999999321 12366666 9999999999999999999998
Q ss_pred hcCCC
Q psy5440 728 HLKPL 732 (1036)
Q Consensus 728 ~L~~l 732 (1036)
.+..+
T Consensus 704 ~L~~l 708 (786)
T COG0542 704 QLNRL 708 (786)
T ss_pred HHHHH
Confidence 88643
No 156
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.26 E-value=6.7e-11 Score=145.18 Aligned_cols=218 Identities=23% Similarity=0.289 Sum_probs=138.9
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc--------------------
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------------------- 603 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------------------- 603 (1036)
-|.+|+|+++++..|.-. +.+|. ..+|||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 488999999998766422 22221 1469999999999999999999876
Q ss_pred ---------------CCCeEEEechhhhhhhccCchhHHHHHHHHh---------hcCCCeEEEEcCchhhhhcCCCCCC
Q psy5440 604 ---------------NVPFITVSGSEFLEMFVGVGPSRVRDMFSMA---------RKHAPCILFIDEIDAVGRKRGGRNF 659 (1036)
Q Consensus 604 ---------------gvpfi~Is~se~~e~~vG~~~~~vr~lF~~A---------r~~aP~ILfIDEIDaL~~~r~~~~~ 659 (1036)
..||+.+.++...+..+|.. .+...+... ......|||||||+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------- 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------- 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------
Confidence 24666665554333333321 111111100 011235999999999832
Q ss_pred CCChhHHHHHHHHHHHhhcC-----------cCCCCeEEEEecCCC-ccccHHhhCCCCcceEEEecCC-ChhhHHHHHH
Q psy5440 660 GGHSEQENTLNQLLVEMDGF-----------NTTTNVVVLAATNRV-DVLDKALLRPGRFDRQIFVPAP-DIKGRASIFK 726 (1036)
Q Consensus 660 ~~~~e~~~~LnqLL~emDg~-----------~~~~~ViVIaaTN~p-d~LDpALlRpGRFdr~I~i~~P-d~eeR~~IL~ 726 (1036)
.+.+.||..|+.- ..+.+++||+|+|.. ..|.++|+. ||+.+|.++.| +.+++.+|++
T Consensus 141 -------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 141 -------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred -------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHH
Confidence 4566677666521 113468999999954 368899999 99999999876 4577778876
Q ss_pred HhcCCCC---------------------------CCCC-hhhHHHHHhhcC--CCC-CHHHHHHHHHHHHHHHHHhcCCc
Q psy5440 727 VHLKPLK---------------------------TDLD-RDDLSRKLAALT--PGF-TGADIANVCNEAALIAARDLHTT 775 (1036)
Q Consensus 727 ~~L~~l~---------------------------~~l~-~~~l~~~LA~~T--~G~-SgaDL~~LvneAal~A~r~~~~~ 775 (1036)
..+.... ..+. .+.+...++... .|. +.+-...+++-|..+|+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~ 291 (633)
T TIGR02442 212 RRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRR 291 (633)
T ss_pred HHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 5332000 0011 112222333222 233 34455567777878888999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy5440 776 IVMKHFEQAIERVVAG 791 (1036)
Q Consensus 776 It~~d~~~Aiervi~g 791 (1036)
|+.+|+..|+.-++..
T Consensus 292 V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 292 VTAEDVREAAELVLPH 307 (633)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999998743
No 157
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=6e-11 Score=114.73 Aligned_cols=123 Identities=44% Similarity=0.646 Sum_probs=82.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccCchhH---HHHHHHHhhcCCCeEEEEcCchhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGVGPSR---VRDMFSMARKHAPCILFIDEIDAVGR 652 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~~~~~---vr~lF~~Ar~~aP~ILfIDEIDaL~~ 652 (1036)
.++++|+||||||||++++++++.+ +.+++.+++.++........... ....+..+....+++|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4679999999999999999999998 89999999987765432211111 11223344456689999999998721
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhc-CcCCCCeEEEEecCCCc--cccHHhhCCCCcceEEEec
Q psy5440 653 KRGGRNFGGHSEQENTLNQLLVEMDG-FNTTTNVVVLAATNRVD--VLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 653 ~r~~~~~~~~~e~~~~LnqLL~emDg-~~~~~~ViVIaaTN~pd--~LDpALlRpGRFdr~I~i~ 714 (1036)
.....+.+++..+.. .....++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 99 -----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 -----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 111222222222211 01246789999999877 78888887 998777765
No 158
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.8e-10 Score=132.73 Aligned_cols=227 Identities=18% Similarity=0.220 Sum_probs=155.2
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se 614 (1036)
.+..+|++.+.-+.-.....-....-..|.. .-..++||||.|.|||+|++|+++++ +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 4568899987655433332222222222211 23458999999999999999999977 34588999999
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
|...++-.....-.+-|+.-. +-.+|+||+|+.+..+.. .+.+.-.++|.|. ...+.+|+.+...|
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-----~qeefFh~FN~l~-------~~~kqIvltsdr~P 219 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-----TQEEFFHTFNALL-------ENGKQIVLTSDRPP 219 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-----HHHHHHHHHHHHH-------hcCCEEEEEcCCCc
Confidence 987776544443344565555 346999999999965431 1334445566654 34456777776667
Q ss_pred cc---ccHHhhCCCCcce--EEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 695 DV---LDKALLRPGRFDR--QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 695 d~---LDpALlRpGRFdr--~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
.. ++|.|++ ||.. .+.+.+||.+.|..||+.........+..+ ....+|.... -+.++|..+++.....|.
T Consensus 220 ~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~e-v~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 220 KELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDE-VLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred hhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 64 5589998 8865 567789999999999999776555455544 4466776654 367888888887766665
Q ss_pred HhcCCcccHHHHHHHHHHHHcCc
Q psy5440 770 RDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aiervi~gl 792 (1036)
... ..||.+.+.+++.......
T Consensus 296 ~~~-~~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 296 FTK-RAITIDLVKEILKDLLRAG 317 (408)
T ss_pred hcC-ccCcHHHHHHHHHHhhccc
Confidence 554 4899999999998876543
No 159
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.24 E-value=2.2e-10 Score=127.02 Aligned_cols=218 Identities=18% Similarity=0.260 Sum_probs=145.1
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechh---
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSE--- 614 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se--- 614 (1036)
..+|++.+++.|..+.+.+.+|.. ..+.++||+|++|.|||++++.++... .+|++.+.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 468999999999999999988876 234579999999999999999998744 35888887532
Q ss_pred ---hh----hh----h-ccCc-hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC
Q psy5440 615 ---FL----EM----F-VGVG-PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT 681 (1036)
Q Consensus 615 ---~~----e~----~-vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~ 681 (1036)
|. +. + .... ...-..+....+...+-+|+|||+|.+... ....+...+|.|-.... .-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~N--eL 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGN--EL 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhh--cc
Confidence 11 11 1 0111 111222345556667789999999998632 22344455554433321 12
Q ss_pred CCCeEEEEecCCC--ccccHHhhCCCCcceEEEecCC-ChhhHHHHHHHhcC--CC--CCCCChhhHHHHHhhcCCCCCH
Q psy5440 682 TTNVVVLAATNRV--DVLDKALLRPGRFDRQIFVPAP-DIKGRASIFKVHLK--PL--KTDLDRDDLSRKLAALTPGFTG 754 (1036)
Q Consensus 682 ~~~ViVIaaTN~p--d~LDpALlRpGRFdr~I~i~~P-d~eeR~~IL~~~L~--~l--~~~l~~~~l~~~LA~~T~G~Sg 754 (1036)
.-.++.+++-.-. -.-|+.|.+ ||+. +.+|.- .-++...++..+-. ++ ...+....++..|-..|.|..
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i- 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI- 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-
Confidence 2245555543222 245788888 9975 555532 23444555554433 22 255677788888999999977
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q psy5440 755 ADIANVCNEAALIAARDLHTTIVMKHFEQ 783 (1036)
Q Consensus 755 aDL~~LvneAal~A~r~~~~~It~~d~~~ 783 (1036)
+++.++++.||..|++.+.+.||.+.++.
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 67999999999999999999999988865
No 160
>KOG0726|consensus
Probab=99.24 E-value=4.9e-12 Score=136.68 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=61.1
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
+..+.-||+||+|+|+..+|++|-|++ |.||+.|.+||+++||||+|||+ |||+||+|+|+.++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 445677999999999999999999999 99999999999999999999999 99999999999998
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=1.6e-10 Score=145.93 Aligned_cols=164 Identities=24% Similarity=0.330 Sum_probs=115.1
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh---
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~--- 618 (1036)
+.|+|++++++.|.+.+...+..-. ....|.+ +||+||+|||||++|+++|..+ ..+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4589999999999888765321000 0122444 7899999999999999999987 468999999988542
Q ss_pred ---------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------
Q psy5440 619 ---------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------- 680 (1036)
Q Consensus 619 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------- 680 (1036)
|+|... ...+.+..+.+..+||+|||||.+.+ .+.|.||..|+.-.
T Consensus 585 ~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~--------------~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 585 SKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP--------------DIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred HHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH--------------HHHHHHHHHhccCceecCCCcEE
Confidence 222222 22344555555558999999998732 45666666666321
Q ss_pred CCCCeEEEEecCCCcc-------------------------------------ccHHhhCCCCcceEEEecCCChhhHHH
Q psy5440 681 TTTNVVVLAATNRVDV-------------------------------------LDKALLRPGRFDRQIFVPAPDIKGRAS 723 (1036)
Q Consensus 681 ~~~~ViVIaaTN~pd~-------------------------------------LDpALlRpGRFdr~I~i~~Pd~eeR~~ 723 (1036)
.-.++++|+|||.... +.|.|+. |+|..|.|.+.+.++..+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWE 726 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHH
Confidence 1247899999985321 1245666 999999999999999999
Q ss_pred HHHHhcCC
Q psy5440 724 IFKVHLKP 731 (1036)
Q Consensus 724 IL~~~L~~ 731 (1036)
|++..+..
T Consensus 727 Iv~~~l~~ 734 (821)
T CHL00095 727 IAEIMLKN 734 (821)
T ss_pred HHHHHHHH
Confidence 99888764
No 162
>KOG0738|consensus
Probab=99.21 E-value=1.1e-11 Score=138.71 Aligned_cols=68 Identities=22% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCC-CCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAK-IPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~-~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
...++|+|+||+|++|||+-|+|.|-. +.-|+-|+ |++ +.|||||+|| ||||||||||+||+ .-||-.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNV 276 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNV 276 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEe
Confidence 456889999999999999999999999 99999998 554 5599999999 99999999999999 555543
No 163
>KOG0739|consensus
Probab=99.21 E-value=8.4e-12 Score=135.28 Aligned_cols=70 Identities=31% Similarity=0.452 Sum_probs=63.5
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCC-ceeEEecC---ChhhHHHHHHhhhccceeeeeeec
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIP-KGAMLTER---NKSRMAQRMLCTAKKLERFLLHNI 208 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~p-kGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~~~ 208 (1036)
-++++|+|+||||+|.||+-|+|.|.+ .|-|+.|+ |-|.| +|+||||| ||+.||+|+|+|++ +-||+..+
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt--GkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSS 199 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT--GKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSS 199 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc--CCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeeh
Confidence 467999999999999999999999999 99999998 77766 99999999 99999999999999 67776543
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=3.7e-10 Score=142.97 Aligned_cols=162 Identities=23% Similarity=0.353 Sum_probs=113.5
Q ss_pred cccccChHHHHHHHHHHHHhc----CchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLK----NPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk----~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~ 618 (1036)
+.|+|++++.+.+.+.+...+ +|. ++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 469999999999998887642 222 223458999999999999999999976 469999999987553
Q ss_pred h-----ccCchh-----HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--c------
Q psy5440 619 F-----VGVGPS-----RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--N------ 680 (1036)
Q Consensus 619 ~-----vG~~~~-----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~------ 680 (1036)
. .|.... .-..+.+..+....+||||||||.+. . .+.+.||..|+.- .
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~---~v~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------P---DVFNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------H---HHHHHHHHHHhcCceecCCCeE
Confidence 1 221111 11223334444545899999999773 2 3456666655421 1
Q ss_pred -CCCCeEEEEecCCCcc-------------------------ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 681 -TTTNVVVLAATNRVDV-------------------------LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 681 -~~~~ViVIaaTN~pd~-------------------------LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
.-.+++||+|||.... +.|.|+. |+|..+.+.+++.+...+|+...+.
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 1246889999997321 2356665 9999999999999999999988875
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=4.3e-10 Score=142.11 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=113.8
Q ss_pred cccccccChHHHHHHHHHHHHhc----CchhHhhhcCCCCc-eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLK----NPQQYIDLGAKIPK-GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk----~p~~~~~lG~~~pk-GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
-++.|+|++++.+.|.+.+...+ +|. .|. .+||+||||||||++|+++|..+ +.+++.++|+++
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~--------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~ 637 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPN--------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF 637 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCC--------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh
Confidence 35679999999999998887643 222 233 58999999999999999999876 468999999988
Q ss_pred hhhh-----ccCchhH----HHHHHHHh-hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--c---
Q psy5440 616 LEMF-----VGVGPSR----VRDMFSMA-RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--N--- 680 (1036)
Q Consensus 616 ~e~~-----vG~~~~~----vr~lF~~A-r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~--- 680 (1036)
.+.. .|..... -...+..+ +....+|||||||+.+. . .+.+.|+..++.- .
T Consensus 638 ~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~---~v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 638 MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------P---DVFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred hhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------H---HHHHHHHHHHhhCceecCC
Confidence 6531 2211110 01223333 33334899999998763 2 3455555555421 1
Q ss_pred ----CCCCeEEEEecCCCc-------------------------cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC
Q psy5440 681 ----TTTNVVVLAATNRVD-------------------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 681 ----~~~~ViVIaaTN~pd-------------------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
.-.+.+||+|||... .+.|+|+. |+|..+.+.+++.+....|++..+..
T Consensus 704 gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 704 GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 123568999999731 24467887 99999999999999999999888754
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.5e-10 Score=136.63 Aligned_cols=205 Identities=20% Similarity=0.316 Sum_probs=143.8
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
.-+++-|+|-++.++++.+++.. +...+-+|+|+||+|||.++..+|.+. +..+++++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45688899999766666655543 223456899999999999999999855 45678888
Q ss_pred chhhhh--hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 612 GSEFLE--MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 612 ~se~~e--~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
.+.++. .|.|+.+.+++.+.++.....+.||||||||.+.+...... + .-+..+.|...| .+..+.+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL-------ARGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL-------ARGELRCIG 304 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH-------hcCCeEEEE
Confidence 888774 68999999999999999988899999999999975433211 1 122233444333 456789999
Q ss_pred ecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC----CCCChhhHHHHHhhc-----CCCCCHH
Q psy5440 690 ATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK----TDLDRDDLSRKLAAL-----TPGFTGA 755 (1036)
Q Consensus 690 aTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~----~~l~~~~l~~~LA~~-----T~G~Sga 755 (1036)
||+..+ .=|+||-| ||. .|.+.-|+.++-..||+-.-..+. ..+..+++ ...+.+ +.-+-+.
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al-~aAv~LS~RYI~dR~LPD 380 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEAL-VAAVTLSDRYIPDRFLPD 380 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHH-HHHHHHHHhhcccCCCCc
Confidence 997544 45899999 995 599999999999999986654322 12333322 222222 2344555
Q ss_pred HHHHHHHHHHHHHHHh
Q psy5440 756 DIANVCNEAALIAARD 771 (1036)
Q Consensus 756 DL~~LvneAal~A~r~ 771 (1036)
-...++.+|+......
T Consensus 381 KAIDLiDeA~a~~~l~ 396 (786)
T COG0542 381 KAIDLLDEAGARVRLE 396 (786)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 5667788876554443
No 167
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.18 E-value=2.1e-10 Score=129.47 Aligned_cols=67 Identities=37% Similarity=0.581 Sum_probs=53.4
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhh
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLE 617 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e 617 (1036)
..+.++|+.+|.+..--+++.++..+. -.+++||.||||||||.||-++|+++| +||..++++++.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 356899999999999999999876543 357899999999999999999999997 8999999988753
No 168
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=7.1e-10 Score=127.06 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=126.0
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-------CeEEE---
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-------PFITV--- 610 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-------pfi~I--- 610 (1036)
....|++|+|+++++..|...+.. .+.|..+||+||+|+|||++|+++|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456899999999999999877654 356778999999999999999999998755 21111
Q ss_pred -echh---hhhh-----h-c-------------cCchhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCCh
Q psy5440 611 -SGSE---FLEM-----F-V-------------GVGPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHS 663 (1036)
Q Consensus 611 -s~se---~~e~-----~-v-------------G~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 663 (1036)
.|.. +... + + .-+...+|.+-+... .....|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 1111 1000 0 0 011234554443322 23456999999999832
Q ss_pred hHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHH
Q psy5440 664 EQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSR 743 (1036)
Q Consensus 664 e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~ 743 (1036)
...|.||..|+. .+.++++|..|+.++.|.|.+++ |+ ..+.+++|+.++..++|+....... ++.+ .+.
T Consensus 156 ---~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~-~~~ 224 (351)
T PRK09112 156 ---NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGE-ITE 224 (351)
T ss_pred ---HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHH-HHH
Confidence 456778888874 44566777778889999999998 87 6899999999999999987432211 3333 345
Q ss_pred HHhhcCCCCCHHHHHHHHH
Q psy5440 744 KLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 744 ~LA~~T~G~SgaDL~~Lvn 762 (1036)
.+++.+.| +++...++++
T Consensus 225 ~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 225 ALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHcCC-CHHHHHHHHh
Confidence 66766665 4444444444
No 169
>KOG1942|consensus
Probab=99.16 E-value=8.5e-10 Score=119.63 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred CCCCeEEEEecCC-------------CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhh
Q psy5440 681 TTTNVVVLAATNR-------------VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAA 747 (1036)
Q Consensus 681 ~~~~ViVIaaTN~-------------pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~ 747 (1036)
++-.-+||.|||+ |.-+++.|+. |+ ..|..-+++.++.++|++...+.....++.+. +..|+.
T Consensus 322 S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a-~~~l~~ 397 (456)
T KOG1942|consen 322 SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEA-LDLLAE 397 (456)
T ss_pred CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHH-HHHHHh
Confidence 3334577777775 5567888887 66 44566678888999999998876555555443 456777
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 748 LTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 748 ~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
.....|-+-..+|+.-|.+.|...++..|..+|++++-+-.+
T Consensus 398 ~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 398 IGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred hccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 666667777778888888898889999999999998776544
No 170
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.16 E-value=1.1e-10 Score=139.78 Aligned_cols=203 Identities=22% Similarity=0.308 Sum_probs=124.7
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh-----------cCCCeEEEe
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE-----------ANVPFITVS 611 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e-----------agvpfi~Is 611 (1036)
.+|++++|.+.+.+.+.+.+..+ +..+..|||+|++||||+++|++|... .+.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46999999999999998888764 233557999999999999999999887 467999999
Q ss_pred chhhhhh-----hccCch--------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 612 GSEFLEM-----FVGVGP--------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 612 ~se~~e~-----~vG~~~--------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
|+.+.+. ..|... ..-..+|+.|.. ..||||||+.+.. .....|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL--------------PLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH--------------HHHHHHHhhhhc
Confidence 9876432 122111 011235665543 4899999999832 222333333321
Q ss_pred C---------cCCCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHHH----HHHHhcCCCCCCCCh
Q psy5440 679 F---------NTTTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRAS----IFKVHLKPLKTDLDR 738 (1036)
Q Consensus 679 ~---------~~~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~~----IL~~~L~~l~~~l~~ 738 (1036)
- ..+.++.||++||..- ..+...|+|.. .+.+..|...+|.+ ++++++..
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L---~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~------- 418 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDL---EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ------- 418 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCH---HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH-------
Confidence 1 1123578999998653 23444455543 23444455544432 12222211
Q ss_pred hhHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 739 DDLSRKLAA-LTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 739 ~~l~~~LA~-~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
.+. ....++. ++..+. .+++.++.++.|+-+..+++.++++...
T Consensus 419 ------~~~~~~~~~~~-~a~~~~-~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 419 ------SLAALSAPFSA-ALRQGL-QQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred ------HHHHcCCCCCH-HHHHhh-HHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 111 1112332 233233 2355667888999999999999999754
No 171
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.15 E-value=5.5e-11 Score=138.79 Aligned_cols=214 Identities=24% Similarity=0.291 Sum_probs=142.5
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~ 618 (1036)
...+.+++|.+.+.+++.+.+..+.. ..-.|||+|++||||.++||+|+... +.||+.+||..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAP----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35688999999999999999988743 34579999999999999999999866 569999999865432
Q ss_pred -----hcc--------CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh-----cCc
Q psy5440 619 -----FVG--------VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD-----GFN 680 (1036)
Q Consensus 619 -----~vG--------~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD-----g~~ 680 (1036)
.+| ... +-...|+.|... .||||||..+-. .+...||..+. ...
T Consensus 207 l~ESELFGhekGAFTGA~~-~r~G~fE~A~GG---TLfLDEI~~mpl--------------~~Q~kLLRvLqe~~~~rvG 268 (464)
T COG2204 207 LLESELFGHEKGAFTGAIT-RRIGRFEQANGG---TLFLDEIGEMPL--------------ELQVKLLRVLQEREFERVG 268 (464)
T ss_pred HHHHHhhcccccCcCCccc-ccCcceeEcCCc---eEEeeccccCCH--------------HHHHHHHHHHHcCeeEecC
Confidence 222 221 122456666554 899999987731 22333443332 111
Q ss_pred C----CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCC-CCChhhHHHHHhhcCCCCCHH
Q psy5440 681 T----TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKT-DLDRDDLSRKLAALTPGFTGA 755 (1036)
Q Consensus 681 ~----~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~-~l~~~~l~~~LA~~T~G~Sga 755 (1036)
. +-+|.||+|||+.- .+....|||-..+++ |+..+..++++++. .-|...+++.+.+....-.+.
T Consensus 269 ~~~~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyy-------RLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~ 338 (464)
T COG2204 269 GNKPIKVDVRIIAATNRDL---EEEVAAGRFREDLYY-------RLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR 338 (464)
T ss_pred CCcccceeeEEEeecCcCH---HHHHHcCCcHHHHHh-------hhccceecCCcccccchhHHHHHHHHHHHHHHHcCC
Confidence 1 23689999999754 456667899665555 88888888887773 344445554443322111111
Q ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCccc
Q psy5440 756 DIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEK 794 (1036)
Q Consensus 756 DL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~ 794 (1036)
....+ ...++.+...+.|+-+.+++..++++.+...+.
T Consensus 339 ~~~~~-s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 339 PPKGF-SPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CCCCC-CHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 11111 133556677789999999999999998776543
No 172
>KOG0652|consensus
Probab=99.14 E-value=3.5e-11 Score=128.42 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=63.3
Q ss_pred cccEEec-CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 128 STAKLIN-SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 128 Skak~~~-~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
|+.+-+. .+++.-+|.||+|+|...+||.|.|-+ ++++++|..||+++||||||||| ||||||||.|..++
T Consensus 155 srVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 155 SRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred hhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 4444433 567888999999999999999998777 99999999999999999999999 99999999998777
No 173
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=124.60 Aligned_cols=135 Identities=30% Similarity=0.419 Sum_probs=91.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHH---HHHhh-cCCC------eEEEEcCch
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDM---FSMAR-KHAP------CILFIDEID 648 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~l---F~~Ar-~~aP------~ILfIDEID 648 (1036)
.+++||.||||||||++|+++|..++.+|+.+.|...+...-..+....... ...-+ ...| +|+|+|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3469999999999999999999999999999999866543211111111111 00000 0011 499999998
Q ss_pred hhhhcCCCCCCCCChhHHHHHHHHHHHhhc----------CcCCCCeEEEEecC-----CCccccHHhhCCCCcceEEEe
Q psy5440 649 AVGRKRGGRNFGGHSEQENTLNQLLVEMDG----------FNTTTNVVVLAATN-----RVDVLDKALLRPGRFDRQIFV 713 (1036)
Q Consensus 649 aL~~~r~~~~~~~~~e~~~~LnqLL~emDg----------~~~~~~ViVIaaTN-----~pd~LDpALlRpGRFdr~I~i 713 (1036)
... ..+.+.||..|+. +.-+..++||+|+| ....|++|+++ ||...+++
T Consensus 123 ra~--------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCC--------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 752 2456666666654 33456789999999 45578999999 99888999
Q ss_pred cCCChhhHHHHHHHhc
Q psy5440 714 PAPDIKGRASIFKVHL 729 (1036)
Q Consensus 714 ~~Pd~eeR~~IL~~~L 729 (1036)
+.|+.++-..++..+.
T Consensus 187 ~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 187 DYPDSEEEERIILARV 202 (329)
T ss_pred CCCCchHHHHHHHHhC
Confidence 9995544444444443
No 174
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.14 E-value=2.3e-09 Score=114.16 Aligned_cols=195 Identities=20% Similarity=0.293 Sum_probs=137.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
....+.+.+|+|++.+++.|.+-...+.. ..+-.+|||+|..||||++|+||+.++. +..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44568999999999999998765555322 2345689999999999999999998877 567899988887
Q ss_pred hhhhccCchhHHHHHHHHhhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--cCCCCeEEEEecC
Q psy5440 616 LEMFVGVGPSRVRDMFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--NTTTNVVVLAATN 692 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~~~~~ViVIaaTN 692 (1036)
.. +-.++++.+.. ..-|||+|++- +...+ .....|-..|||- ..+.+|+|.||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd---~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLS----------FEEGD---DAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCC----------CCCCc---hHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 53 44666666653 35799999972 11122 2334444455653 3467899999999
Q ss_pred CCccccHHhh--------------------CCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhH---HHHHhhcC
Q psy5440 693 RVDVLDKALL--------------------RPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDL---SRKLAALT 749 (1036)
Q Consensus 693 ~pd~LDpALl--------------------RpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l---~~~LA~~T 749 (1036)
|-..|+.... =.-||...+.|.+++.++-..|+..+++....+.+.+.+ +-..|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8665542221 113999999999999999999999999877755543222 22344455
Q ss_pred CCCCHHHHHHHHHH
Q psy5440 750 PGFTGADIANVCNE 763 (1036)
Q Consensus 750 ~G~SgaDL~~Lvne 763 (1036)
.|-||+-..+.++.
T Consensus 263 g~RSGR~A~QF~~~ 276 (287)
T COG2607 263 GGRSGRVAWQFIRD 276 (287)
T ss_pred CCCccHhHHHHHHH
Confidence 66777766666654
No 175
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-10 Score=134.45 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=139.2
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
.....+.+|||.+.+..++.+.|+... +.+..|||.|.+||||-++||+|.... +.||+.+||+.+-
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 446789999999999999999998863 334579999999999999999999866 5799999998776
Q ss_pred hh-------------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHH--hhcCcC
Q psy5440 617 EM-------------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVE--MDGFNT 681 (1036)
Q Consensus 617 e~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~e--mDg~~~ 681 (1036)
+. |.|.... -+.-|+.|... .||+|||..+-. .-+...| ..|++ ++.+..
T Consensus 287 esLlESELFGHeKGAFTGA~~~-r~GrFElAdGG---TLFLDEIGelPL----------~lQaKLL-RvLQegEieRvG~ 351 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINT-RRGRFELADGG---TLFLDEIGELPL----------ALQAKLL-RVLQEGEIERVGG 351 (550)
T ss_pred hHHHHHHHhcccccccccchhc-cCcceeecCCC---eEechhhccCCH----------HHHHHHH-HHHhhcceeecCC
Confidence 53 1221111 12345555444 799999977621 1112222 22222 222222
Q ss_pred C----CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCC-CCChhhHHHHHhhcCCCCCHHH
Q psy5440 682 T----TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKT-DLDRDDLSRKLAALTPGFTGAD 756 (1036)
Q Consensus 682 ~----~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~-~l~~~~l~~~LA~~T~G~SgaD 756 (1036)
+ -+|.||||||+.- ....+.|+|-..+++ |...+-.++++++. .-|...++.++.+...-..|..
T Consensus 352 ~r~ikVDVRiIAATNRDL---~~~V~~G~FRaDLYy-------RLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~ 421 (550)
T COG3604 352 DRTIKVDVRVIAATNRDL---EEMVRDGEFRADLYY-------RLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA 421 (550)
T ss_pred CceeEEEEEEEeccchhH---HHHHHcCcchhhhhh-------cccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc
Confidence 2 2689999999753 344566899766666 78888888888773 3444444444443322222221
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 757 IANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 757 L~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
...+- ..++.++.+..++-+..+++.+++|..-
T Consensus 422 ~l~ls-~~Al~~L~~y~wPGNVRELen~veRavl 454 (550)
T COG3604 422 ILSLS-AEALELLSSYEWPGNVRELENVVERAVL 454 (550)
T ss_pred ccccC-HHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 11111 2355667778888888888888888654
No 176
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.7e-09 Score=124.51 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=122.2
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------E----E
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------I----T 609 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i----~ 609 (1036)
...+|++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456899999999999999877654 35678899999999999999999999763310 0 0
Q ss_pred ---E-ech-----------hhhhhhc---cC--------chhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCC
Q psy5440 610 ---V-SGS-----------EFLEMFV---GV--------GPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNF 659 (1036)
Q Consensus 610 ---I-s~s-----------e~~e~~v---G~--------~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~ 659 (1036)
. .|. ++..... .. .-..+|++-+.+. ...|-||+|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0 011 1110000 11 1244666655443 3457899999999883
Q ss_pred CCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChh
Q psy5440 660 GGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRD 739 (1036)
Q Consensus 660 ~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~ 739 (1036)
....|.||..++. .+.++++|.+|+.++.+.+.+++ |+ ..|.+++|+.++..++|..+... ...+
T Consensus 155 ------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~~~ 219 (365)
T PRK07471 155 ------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LPDD 219 (365)
T ss_pred ------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CCHH
Confidence 2566788888873 45677888899999999999988 76 56999999999999999876532 1112
Q ss_pred hHHHHHhhcCCCC
Q psy5440 740 DLSRKLAALTPGF 752 (1036)
Q Consensus 740 ~l~~~LA~~T~G~ 752 (1036)
. +..++..+.|-
T Consensus 220 ~-~~~l~~~s~Gs 231 (365)
T PRK07471 220 P-RAALAALAEGS 231 (365)
T ss_pred H-HHHHHHHcCCC
Confidence 2 24566666663
No 177
>PHA02244 ATPase-like protein
Probab=99.13 E-value=1.8e-09 Score=122.95 Aligned_cols=123 Identities=25% Similarity=0.319 Sum_probs=81.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh--cc---CchhHHHHHHHHhhcCCCeEEEEcCchhhhhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF--VG---VGPSRVRDMFSMARKHAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~--vG---~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 653 (1036)
...+||+||||||||++|+++|..++.||+.+++. .+.+ .| ....-...-|-.|. ..+++|+||||+.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH-
Confidence 44699999999999999999999999999999842 2111 11 11111111222332 2357999999998732
Q ss_pred CCCCCCCCChhHHHHHHHHHHH-----hhc-CcCCCCeEEEEecCCC-----------ccccHHhhCCCCcceEEEecCC
Q psy5440 654 RGGRNFGGHSEQENTLNQLLVE-----MDG-FNTTTNVVVLAATNRV-----------DVLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 654 r~~~~~~~~~e~~~~LnqLL~e-----mDg-~~~~~~ViVIaaTN~p-----------d~LDpALlRpGRFdr~I~i~~P 716 (1036)
.....|+.++.. .++ +..+.++.+|+|+|.+ ..|++|++. || ..|+++.|
T Consensus 195 ----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 195 ----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred ----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 223344555431 111 1234689999999973 578999999 99 46999999
Q ss_pred Ch
Q psy5440 717 DI 718 (1036)
Q Consensus 717 d~ 718 (1036)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 84
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.13 E-value=6.5e-10 Score=133.41 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=131.7
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhh--hcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-eEEE---echhhhhhhc
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYID--LGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-FITV---SGSEFLEMFV 620 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~--lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-fi~I---s~se~~e~~v 620 (1036)
+|.|++.+|..|.-.+ +........ ...+-..++||+|+||||||++|++++..+... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 3789998876663222 221111001 112233479999999999999999999977533 3321 2222211000
Q ss_pred cC---chhHHH-HHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-----------CCCCe
Q psy5440 621 GV---GPSRVR-DMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-----------TTTNV 685 (1036)
Q Consensus 621 G~---~~~~vr-~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-----------~~~~V 685 (1036)
.. +...++ ..+.. ....+++|||+|.+.. .+...|+..|+.-. -+.++
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 00 000000 01111 2235999999999832 23445555554211 23578
Q ss_pred EEEEecCCCc-------------cccHHhhCCCCcceEEEe-cCCChhhHHHHHHHhcCCCC-----------CCCCh--
Q psy5440 686 VVLAATNRVD-------------VLDKALLRPGRFDRQIFV-PAPDIKGRASIFKVHLKPLK-----------TDLDR-- 738 (1036)
Q Consensus 686 iVIaaTN~pd-------------~LDpALlRpGRFdr~I~i-~~Pd~eeR~~IL~~~L~~l~-----------~~l~~-- 738 (1036)
.||||+|..+ .|+++|++ |||..+.+ +.|+.+...+|+++.+.... ..++.
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEF 422 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHH
Confidence 9999999642 59999999 99987655 78999999898887432100 01111
Q ss_pred -----------------hhHHHHHh-----hc----------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy5440 739 -----------------DDLSRKLA-----AL----------TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 739 -----------------~~l~~~LA-----~~----------T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aie 786 (1036)
+...+.|. .+ ..+.|.+.+..+++-|-.+|..+.+..|+.+|+..|++
T Consensus 423 l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 423 LRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 11111111 01 23568888999999988888889999999999999987
Q ss_pred HH
Q psy5440 787 RV 788 (1036)
Q Consensus 787 rv 788 (1036)
-+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 54
No 179
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=1.5e-09 Score=118.96 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=118.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCC-CeEE---Ee----chhhhhh---hccCc---h---h---HHHHHH-HHhhcCCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANV-PFIT---VS----GSEFLEM---FVGVG---P---S---RVRDMF-SMARKHAP 639 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagv-pfi~---Is----~se~~e~---~vG~~---~---~---~vr~lF-~~Ar~~aP 639 (1036)
.++|+||+|+|||++++.+++++.. .+.. ++ ..++... ..|.. . . .+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998752 2221 11 1122111 11211 1 1 122212 22335667
Q ss_pred eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc---ccc----HHhhCCCCcceEEE
Q psy5440 640 CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD---VLD----KALLRPGRFDRQIF 712 (1036)
Q Consensus 640 ~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd---~LD----pALlRpGRFdr~I~ 712 (1036)
++|+|||+|.+.. .....+..|..... .....+.|+.+ ..++ .+. ..+.+ |+...+.
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998731 11223333322111 11222333333 2222 221 23444 7778899
Q ss_pred ecCCChhhHHHHHHHhcCCCC----CCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 713 VPAPDIKGRASIFKVHLKPLK----TDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 713 i~~Pd~eeR~~IL~~~L~~l~----~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
+++.+.++..+++...+.... ..++ +..++.|++.+.|.. +.|..+|+.+...|..++...|+.+++++++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~-~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFS-EGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcC-HHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999998876432 1233 456688999999975 6699999999999999999999999999998763
No 180
>PRK09087 hypothetical protein; Validated
Probab=99.12 E-value=4.3e-10 Score=121.47 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG 660 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 660 (1036)
.++|+||+|+|||+|+++++...++. +++..+|...+ +..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCC--------
Confidence 48999999999999999999887655 44444443221 111111 3789999997621
Q ss_pred CChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCC
Q psy5440 661 GHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTD 735 (1036)
Q Consensus 661 ~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~ 735 (1036)
...+.-.++|.+ ......+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.+|++.++......
T Consensus 102 ~~~~lf~l~n~~-------~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 DETGLFHLINSV-------RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred CHHHHHHHHHHH-------HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 112222233333 23445677777665552 3678888 775 788999999999999999999765544
Q ss_pred CChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 736 LDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 736 l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
++ ++.++.|++...+ +.+.+..+++.....+.. ....||...+++++..+
T Consensus 173 l~-~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VD-PHVVYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred CC-HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 54 4455778877764 455666666554444433 35679999998888764
No 181
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.12 E-value=1.1e-09 Score=128.59 Aligned_cols=214 Identities=15% Similarity=0.120 Sum_probs=127.9
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechh-hhhhhccCc-
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSE-FLEMFVGVG- 623 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se-~~e~~vG~~- 623 (1036)
|+|.+++.+.+...+ -...++||+||||||||++|+++|..++. +|..+.+.- ..+...|..
T Consensus 22 i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 677776666554333 22456999999999999999999997643 566554431 111122211
Q ss_pred hhHH--HHHHHHhhcC---CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc-CcCC-------CCeEEEEe
Q psy5440 624 PSRV--RDMFSMARKH---APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG-FNTT-------TNVVVLAA 690 (1036)
Q Consensus 624 ~~~v--r~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg-~~~~-------~~ViVIaa 690 (1036)
-... ..-|...... ...|||+|||..+. ..+.+.||..|.. .-.. +..++++|
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 0000 1122221111 22499999997553 2567788887732 1011 11344555
Q ss_pred cCCCc---cccHHhhCCCCcceEEEecCCC-hhhHHHHHHHhcC----CCC--CCCChh----------------hHHH-
Q psy5440 691 TNRVD---VLDKALLRPGRFDRQIFVPAPD-IKGRASIFKVHLK----PLK--TDLDRD----------------DLSR- 743 (1036)
Q Consensus 691 TN~pd---~LDpALlRpGRFdr~I~i~~Pd-~eeR~~IL~~~L~----~l~--~~l~~~----------------~l~~- 743 (1036)
||... ...+++.. ||-..+.+++|+ .++..+||..... +.. ..+..+ .+.+
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ey 231 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFEL 231 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHH
Confidence 57432 23358999 998889999997 4566788875422 111 111111 1112
Q ss_pred --HHhh---cC---CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCc
Q psy5440 744 --KLAA---LT---PGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 744 --~LA~---~T---~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gl 792 (1036)
.|.. .+ ...|++--..+++-|...|..+++..|+.+|+. .+..+++.-
T Consensus 232 I~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 232 IFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 2222 12 237888888899988889999999999999999 777777653
No 182
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.4e-09 Score=122.80 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=120.0
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh--c
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF--V 620 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~--v 620 (1036)
.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+.+....-+..++.... .
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3699999999999998777632 35677889999999999999999999764421111111211110 1
Q ss_pred c--CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 621 G--VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 621 G--~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
| .....+|++.+.+.. ...-|++||++|.+. ....|.||..++. .+.++++|.+|+.+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~~~~ 133 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLCENL 133 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCCh
Confidence 1 123457777664432 233699999999883 2356788888873 56677777777889
Q ss_pred ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
+.|-|++++ |+ ..+.+.+|+.++....+...+.. ++.+ .++.++..+.|-
T Consensus 134 ~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~~~~l~~~~~g~ 183 (313)
T PRK05564 134 EQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND----IKEE-EKKSAIAFSDGI 183 (313)
T ss_pred HhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC----CCHH-HHHHHHHHcCCC
Confidence 999999998 66 57999999999988888766542 2322 234556566553
No 183
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.11 E-value=1.2e-09 Score=130.13 Aligned_cols=211 Identities=25% Similarity=0.332 Sum_probs=129.7
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc------------------
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA------------------ 603 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea------------------ 603 (1036)
...|+||.|++.+++.+.-.+ .....++|+||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 347999999998876553222 223579999999999999999998632
Q ss_pred ----------CCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 604 ----------NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 604 ----------gvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
..||....++......+|.+...-...+..|. ..+|||||++.+.+ .+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~--------------~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR--------------SVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH--------------HHHHHHH
Confidence 12444333332222222322111112333342 35999999998732 3444555
Q ss_pred HHhhcCc-----------CCCCeEEEEecCCC------c-----------------cccHHhhCCCCcceEEEecCCChh
Q psy5440 674 VEMDGFN-----------TTTNVVVLAATNRV------D-----------------VLDKALLRPGRFDRQIFVPAPDIK 719 (1036)
Q Consensus 674 ~emDg~~-----------~~~~ViVIaaTN~p------d-----------------~LDpALlRpGRFdr~I~i~~Pd~e 719 (1036)
..|+... -+.++.+|+++|.- + .|...|+. |||.++.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 5454221 13578999999952 1 58888999 99999999876433
Q ss_pred h-------------HHHHHHHh------cCC-----CCCCCCh-------------hhHHHHHhhcCCCCCHHHHHHHHH
Q psy5440 720 G-------------RASIFKVH------LKP-----LKTDLDR-------------DDLSRKLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 720 e-------------R~~IL~~~------L~~-----l~~~l~~-------------~~l~~~LA~~T~G~SgaDL~~Lvn 762 (1036)
+ |..+.+.+ ++. .+..+.. ..++.... ...++|.+....+++
T Consensus 395 ~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~-~~~~lS~R~~~rilr 473 (499)
T TIGR00368 395 KLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGAL-NKLGLSSRATHRILK 473 (499)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHH-HhcCCCchHHHHHHH
Confidence 2 22232211 111 1111111 11111112 223578899999999
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHH
Q psy5440 763 EAALIAARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 763 eAal~A~r~~~~~It~~d~~~Aie 786 (1036)
-|..+|..++.+.|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999975
No 184
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.11 E-value=7e-10 Score=135.36 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCeEEEEecCCC--ccccHHhhCCCCcc---eEEEec--CC-ChhhHHHHHHHhcC---CC--CCCCChhhHHHHH---h
Q psy5440 683 TNVVVLAATNRV--DVLDKALLRPGRFD---RQIFVP--AP-DIKGRASIFKVHLK---PL--KTDLDRDDLSRKL---A 746 (1036)
Q Consensus 683 ~~ViVIaaTN~p--d~LDpALlRpGRFd---r~I~i~--~P-d~eeR~~IL~~~L~---~l--~~~l~~~~l~~~L---A 746 (1036)
.++.||+++|.. ..+||+|++ ||+ ..+.++ .| +.+.|.++.+...+ .. ...++.+.+.+.+ .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 368899999975 479999999 998 666653 34 45556555554333 11 2234544443322 2
Q ss_pred hcCC-----CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 747 ALTP-----GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 747 ~~T~-----G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
+... -.+.++|.++|++|...|..++...|+.+|+++|++..
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 2211 13468999999999888877888899999999998765
No 185
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.11 E-value=6.5e-10 Score=133.33 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=122.7
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~ 618 (1036)
..+|++++|.+.+.+.+.+.+..+ +..+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999998888665 2335579999999999999999998754 679999999876432
Q ss_pred -----hccCch--------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----c
Q psy5440 619 -----FVGVGP--------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----N 680 (1036)
Q Consensus 619 -----~vG~~~--------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----~ 680 (1036)
..|... ..-..+|+.|.. ..||||||+.+-. .....|+..++.- .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 222111 112345555543 4899999999832 2223333333211 1
Q ss_pred ----CCCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHHH----HHHHhcCCCCCCCChhhHHHHH
Q psy5440 681 ----TTTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRAS----IFKVHLKPLKTDLDRDDLSRKL 745 (1036)
Q Consensus 681 ----~~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~~----IL~~~L~~l~~~l~~~~l~~~L 745 (1036)
.+.++.||++||..- ..+...|+|.. .+.+..|...+|.+ ++..++.....
T Consensus 341 ~~~~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------- 406 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA----------- 406 (526)
T ss_pred CCceeeecceEEeccCCCH---HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH-----------
Confidence 123568999998653 22233344432 24444555555543 23333322110
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 746 AALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 746 A~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
....+++...+.. .. .++..+.+..|+-+..+++.++++.+.
T Consensus 407 -~~~~~~~~~a~~~-~~-~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 407 -ALRLPDSEAAAQV-LA-GVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred -HcCCCCCHHHHHH-hH-HHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 0111344333322 11 233446778888888888888888754
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.10 E-value=8.3e-10 Score=105.42 Aligned_cols=126 Identities=37% Similarity=0.495 Sum_probs=84.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCC---eEEEechhhhhh--------------hccCchhHHHHHHHHhhcCCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVP---FITVSGSEFLEM--------------FVGVGPSRVRDMFSMARKHAPCI 641 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvp---fi~Is~se~~e~--------------~vG~~~~~vr~lF~~Ar~~aP~I 641 (1036)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.++..++...|+|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999999775 888888754332 12334556778888888887899
Q ss_pred EEEcCchhhhhcCCCCCCCCChhHHHHHHHH--HHHhhcCcCCCCeEEEEecCC-CccccHHhhCCCCcceEEEecCC
Q psy5440 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQL--LVEMDGFNTTTNVVVLAATNR-VDVLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 642 LfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL--L~emDg~~~~~~ViVIaaTN~-pd~LDpALlRpGRFdr~I~i~~P 716 (1036)
|||||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999885321 11111100 000111124557888899886 3334444444 89988887654
No 187
>KOG1969|consensus
Probab=99.10 E-value=2.7e-09 Score=127.20 Aligned_cols=211 Identities=22% Similarity=0.253 Sum_probs=138.9
Q ss_pred cccccCCCCccccccccChHHHHHHHHHHHHhc---CchhHhhh-------------------cCCCCceeEEeCCCCCc
Q psy5440 534 KLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLK---NPQQYIDL-------------------GAKIPKGAMLTGPPGTG 591 (1036)
Q Consensus 534 ~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk---~p~~~~~l-------------------G~~~pkGvLL~GPPGTG 591 (1036)
+++..+...-.|.|+.|-+.+-+.+..++.... ..+++.++ +.+.-|-+||+||||-|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 355556667789999999998888887776531 11111111 12223568999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhh--------cCCCeEEEEcCchhhhhcCCCCCCCCCh
Q psy5440 592 KTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMAR--------KHAPCILFIDEIDAVGRKRGGRNFGGHS 663 (1036)
Q Consensus 592 KTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 663 (1036)
|||||+.||+.+|..++.||+|+-.. +..++.-.+.|- ...|..|+|||||--.
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------ 400 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------ 400 (877)
T ss_pred hhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------
Confidence 99999999999999999999998432 233333333332 2468899999998321
Q ss_pred hHHHHHHHHHHHhh-------cCcCC------------CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHH
Q psy5440 664 EQENTLNQLLVEMD-------GFNTT------------TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASI 724 (1036)
Q Consensus 664 e~~~~LnqLL~emD-------g~~~~------------~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~I 724 (1036)
...++.+|..+. |-... -.--||+.||... -|||+.---|-..|.|.+|...-..+-
T Consensus 401 --~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 --RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred --HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHH
Confidence 122333333332 11000 0135788898654 477753224788899999998888888
Q ss_pred HHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 725 FKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 725 L~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
|+..+...+...+...+ ..|++.|. .||++-+|.--+.+.+.
T Consensus 477 L~~IC~rE~mr~d~~aL-~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 477 LNEICHRENMRADSKAL-NALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHhhhcCCCCHHHH-HHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 88888765555555443 45666665 49999999876666554
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=1.9e-09 Score=112.59 Aligned_cols=144 Identities=17% Similarity=0.283 Sum_probs=101.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCC------------------------eEEEechhhhhhhccCchhHHHHHHH
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVP------------------------FITVSGSEFLEMFVGVGPSRVRDMFS 632 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvp------------------------fi~Is~se~~e~~vG~~~~~vr~lF~ 632 (1036)
+.|..+||+||+|+|||++|+++|..+.+. +..++... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567789999999999999999999987442 11111100 0112356666666
Q ss_pred Hhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcc
Q psy5440 633 MARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFD 708 (1036)
Q Consensus 633 ~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFd 708 (1036)
.+.. ....||+|||+|.+.. ...+.||..|+. .+..+++|.+||.+..|.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 6654 3347999999999842 346778888875 34466777777788999999998 66
Q ss_pred eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCC
Q psy5440 709 RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPG 751 (1036)
Q Consensus 709 r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G 751 (1036)
..+.+.+|+.++..++++.+ . ++. ..+..++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----g--i~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----G--ISE-EAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----C--CCH-HHHHHHHHHcCC
Confidence 47999999999999999876 1 343 335566666655
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.08 E-value=1.1e-09 Score=127.51 Aligned_cols=154 Identities=26% Similarity=0.358 Sum_probs=90.3
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-----C--eEEEe----ch
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-----P--FITVS----GS 613 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-----p--fi~Is----~s 613 (1036)
++++.+.++..+.+. ..|. ..++++|+||||||||++|+++|..+.. + ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~---~~L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETIL---KRLT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHH---HHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 778888776555553 3332 1457999999999999999999987742 1 22222 23
Q ss_pred hhhhhh--ccCchh----HHHHHHHHhhcC--CCeEEEEcCchhhhhcCCCCCC-C--CChhHHHHHHH--HHHH--hhc
Q psy5440 614 EFLEMF--VGVGPS----RVRDMFSMARKH--APCILFIDEIDAVGRKRGGRNF-G--GHSEQENTLNQ--LLVE--MDG 678 (1036)
Q Consensus 614 e~~e~~--vG~~~~----~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r~~~~~-~--~~~e~~~~Lnq--LL~e--mDg 678 (1036)
+|++.+ .+.+-. .+.+++..|+.. .|+|||||||+.....+-.+.. . ..+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 444333 111111 234455666653 5899999999976432211000 0 00000000000 0011 123
Q ss_pred CcCCCCeEEEEecCCCc----cccHHhhCCCCcceEEEecC
Q psy5440 679 FNTTTNVVVLAATNRVD----VLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 679 ~~~~~~ViVIaaTN~pd----~LDpALlRpGRFdr~I~i~~ 715 (1036)
+..+.++.||||+|..+ .||.||+| ||.. |.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 56678999999999988 79999999 9954 66643
No 190
>KOG0737|consensus
Probab=99.07 E-value=7.8e-11 Score=131.89 Aligned_cols=69 Identities=30% Similarity=0.480 Sum_probs=62.3
Q ss_pred EecCCCCccceeccccchHHHHHHHHHHHh-cCCchhHHh-cCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 132 LINSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYID-LGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 132 ~~~~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~-lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
++.+.+.+|+|+|++|+|++|++|+|.|-+ |+.|+.|.. -=.++||||||||| ||||||+|+|+|++..
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 456788999999999999999999999999 999999953 22468899999999 9999999999999965
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-10 Score=123.60 Aligned_cols=127 Identities=31% Similarity=0.476 Sum_probs=88.0
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhc-------CCCC-ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh-
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLG-------AKIP-KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 618 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG-------~~~p-kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~- 618 (1036)
|+|++.+|+.|.=.|. ..|.++. .... .++||.||+|+|||+||+.+|+.+++||-..++..+.+.
T Consensus 63 VIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 7899999987742221 1222222 1122 369999999999999999999999999999999998874
Q ss_pred hccCchhHH-HHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC
Q psy5440 619 FVGVGPSRV-RDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF 679 (1036)
Q Consensus 619 ~vG~~~~~v-r~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~ 679 (1036)
|+|+.-.++ ..++..|. +....||||||||.+.++..+..-..+-..+.+...||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 888765543 33333221 12246999999999998765433222333456778888888874
No 192
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.06 E-value=2.2e-10 Score=130.21 Aligned_cols=196 Identities=23% Similarity=0.297 Sum_probs=114.5
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-----h
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-----F 619 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-----~ 619 (1036)
++|.+.+.+.+.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|+.+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 5788888888887777652 335579999999999999999998755 479999999865321 1
Q ss_pred ccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC---------cCCC
Q psy5440 620 VGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF---------NTTT 683 (1036)
Q Consensus 620 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~---------~~~~ 683 (1036)
.|... ..-..+|+.|. ..+|||||||.+.. .....|+..++.- ....
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceecc
Confidence 12110 01122345443 45899999999832 2233344333321 1134
Q ss_pred CeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhhHHH----HHHHhcCCCCCCCChhhHHHHHhhcC-CC
Q psy5440 684 NVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKGRAS----IFKVHLKPLKTDLDRDDLSRKLAALT-PG 751 (1036)
Q Consensus 684 ~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~eeR~~----IL~~~L~~l~~~l~~~~l~~~LA~~T-~G 751 (1036)
++.||++||..- .+.+.|.. ||. .+.+..|...+|.+ +++.++... ........ .+
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~---------~~~~~~~~~~~ 201 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRM---------ARELGLPLFPG 201 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHH---------HHHhCCCCCCC
Confidence 689999998642 23344444 442 23444455555443 222222110 01111111 23
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcC
Q psy5440 752 FTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 752 ~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~g 791 (1036)
++ ..++.++.+..++-+..+++.++++.+..
T Consensus 202 ls---------~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 202 FT---------PQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred cC---------HHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 33 34556667778888888888888876543
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.05 E-value=2.9e-10 Score=112.55 Aligned_cols=110 Identities=32% Similarity=0.401 Sum_probs=69.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh--hccCchh------HHHHHHHHhhcCCCeEEEEcCchhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM--FVGVGPS------RVRDMFSMARKHAPCILFIDEIDAVGR 652 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~--~vG~~~~------~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 652 (1036)
+|||+||||||||++|+.+|..++.+++.++++...+. ..|.-.- .....+..+. ..++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999998765431 1111000 0000000111 146899999999762
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhcC-----------cCCC------CeEEEEecCCCc----cccHHhhCCCCc
Q psy5440 653 KRGGRNFGGHSEQENTLNQLLVEMDGF-----------NTTT------NVVVLAATNRVD----VLDKALLRPGRF 707 (1036)
Q Consensus 653 ~r~~~~~~~~~e~~~~LnqLL~emDg~-----------~~~~------~ViVIaaTN~pd----~LDpALlRpGRF 707 (1036)
. .++..|+..++.- .... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ----------~---~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------P---EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------H---HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------H---HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2 3344444433321 0111 489999999988 99999999 87
No 194
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.04 E-value=3.7e-09 Score=128.85 Aligned_cols=193 Identities=19% Similarity=0.213 Sum_probs=126.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhhhhccCchhHHHHHHHHh---------hcCCCeEEEEcCch
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLEMFVGVGPSRVRDMFSMA---------RKHAPCILFIDEID 648 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e~~vG~~~~~vr~lF~~A---------r~~aP~ILfIDEID 648 (1036)
.+|||.|+||||||++|++++..+. .||+.+.+....+..+|.. .+...+... ......|||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 3799999999999999999999775 4798887643333333331 111111100 01123599999999
Q ss_pred hhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-----------CCCCeEEEEecCCCc---cccHHhhCCCCcceEEEec
Q psy5440 649 AVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-----------TTTNVVVLAATNRVD---VLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 649 aL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-----------~~~~ViVIaaTN~pd---~LDpALlRpGRFdr~I~i~ 714 (1036)
.+.+ .+.+.|+..|+.-. .+.++.||||+|..+ .|.++|+. ||+.+|.+.
T Consensus 95 rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 8842 45666666665211 124689999999765 79999999 999988776
Q ss_pred -CCChhhHHHHHHHhcCCC---------------------CCCCC-hhhHHHHHhhc--CCCCC-HHHHHHHHHHHHHHH
Q psy5440 715 -APDIKGRASIFKVHLKPL---------------------KTDLD-RDDLSRKLAAL--TPGFT-GADIANVCNEAALIA 768 (1036)
Q Consensus 715 -~Pd~eeR~~IL~~~L~~l---------------------~~~l~-~~~l~~~LA~~--T~G~S-gaDL~~LvneAal~A 768 (1036)
.|+.++|.+|++.++... ...+. .+.+...|+.. .-|.+ .+.-..+++-|...|
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 467788999998765211 01111 12222222222 12333 344446677788888
Q ss_pred HHhcCCcccHHHHHHHHHHHHc
Q psy5440 769 ARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi~ 790 (1036)
+.+++..|+.+|+..|+.-++.
T Consensus 239 al~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 239 ALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHhCCCCCCHHHHHHHHHHHhh
Confidence 8899999999999999999864
No 195
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=120.19 Aligned_cols=83 Identities=25% Similarity=0.363 Sum_probs=63.6
Q ss_pred eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------cCCCCeEEEEec----CCCccccHHhhCCCCc
Q psy5440 640 CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--------NTTTNVVVLAAT----NRVDVLDKALLRPGRF 707 (1036)
Q Consensus 640 ~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--------~~~~~ViVIaaT----N~pd~LDpALlRpGRF 707 (1036)
.||||||||.++.+.+.+ +....++.+...||-.++|. ...+++++||+. ..|..|=|.|.- ||
T Consensus 252 GIvFIDEIDKIa~~~~~g--~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--Rf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG--GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCC--CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CC
Confidence 599999999998765422 22445566777888777764 234578999985 468888888865 99
Q ss_pred ceEEEecCCChhhHHHHHH
Q psy5440 708 DRQIFVPAPDIKGRASIFK 726 (1036)
Q Consensus 708 dr~I~i~~Pd~eeR~~IL~ 726 (1036)
...+++...+.++...||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888874
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.04 E-value=2.5e-10 Score=132.76 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=62.5
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.+.|+|+||+|++.+|++|++.|++ |++|+.|.++|...|+||||||| |||++|+|+|++++..
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 457899999999999999999999987 99999999999999999999999 9999999999998843
No 197
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=2.7e-10 Score=129.40 Aligned_cols=199 Identities=25% Similarity=0.296 Sum_probs=120.7
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh--
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-- 618 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-- 618 (1036)
-|++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|..+-+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 47889999999999988887752 335579999999999999999998755 479999999976321
Q ss_pred ---hccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--c------
Q psy5440 619 ---FVGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--N------ 680 (1036)
Q Consensus 619 ---~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~------ 680 (1036)
..|... ......|+.|. ...|||||||.+.. .....|+..++.- .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPM--------------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 122110 01122344443 35899999999842 2233344333321 1
Q ss_pred -CCCCeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhhHHH----HHHHhcCCCCCCCChhhHHHHHhhc
Q psy5440 681 -TTTNVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKGRAS----IFKVHLKPLKTDLDRDDLSRKLAAL 748 (1036)
Q Consensus 681 -~~~~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~eeR~~----IL~~~L~~l~~~l~~~~l~~~LA~~ 748 (1036)
.+.++.||++|+..- .+.+.|.. ||.. +.+..|...+|.+ ++.+++... ...+...
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~---------~~~~~~~ 204 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAF-DVVQLPPLRERQSDIMLMAEHFAIQM---------CRELGLP 204 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCC-CEEECCChhhhhhhHHHHHHHHHHHH---------HHHhCCC
Confidence 123588999988642 34455655 5632 3344455555543 333333211 1111111
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 749 -TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 749 -T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
..+++ ..++....+..++-+..+++.++++.+.
T Consensus 205 ~~~~~s---------~~al~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 205 LFPGFT---------ERARETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred CCCCCC---------HHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 12444 3455556677888888888888888654
No 198
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.03 E-value=3.1e-10 Score=136.21 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=120.5
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh--
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-- 618 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-- 618 (1036)
++.+++|.+...+.+.+.+..+ +..+..|||+|++|||||++|++|+... +.||+.++|+.+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999998888775 3345679999999999999999999864 579999999877432
Q ss_pred ---hccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--------
Q psy5440 619 ---FVGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-------- 680 (1036)
Q Consensus 619 ---~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-------- 680 (1036)
..|... ......|+.|. ...|||||||.+.. .....|+..++.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 122110 00112354443 35899999999842 22334444333211
Q ss_pred -CCCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHHH-H---HHHhcCCCCCCCChhhHHHHHhhc
Q psy5440 681 -TTTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRAS-I---FKVHLKPLKTDLDRDDLSRKLAAL 748 (1036)
Q Consensus 681 -~~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~~-I---L~~~L~~l~~~l~~~~l~~~LA~~ 748 (1036)
...++.||++||..- ..+...|+|.. .+.+..|...+|.+ | +++++... ...+...
T Consensus 318 ~~~~~~RiI~~t~~~l---~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~---------~~~~~~~ 385 (509)
T PRK05022 318 SLRVDVRVIAATNRDL---REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQN---------RARLGLR 385 (509)
T ss_pred ceecceEEEEecCCCH---HHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHH---------HHHcCCC
Confidence 123689999998653 23333344432 24455566655543 2 22222111 0111111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 749 TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 749 T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
..+++ ..++..+.++.++-+..+++.++++.+.
T Consensus 386 ~~~~s---------~~a~~~L~~y~WPGNvrEL~~~i~ra~~ 418 (509)
T PRK05022 386 SLRLS---------PAAQAALLAYDWPGNVRELEHVISRAAL 418 (509)
T ss_pred CCCCC---------HHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 22333 3455566677888888888888887644
No 199
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.02 E-value=2.9e-09 Score=122.67 Aligned_cols=199 Identities=25% Similarity=0.311 Sum_probs=117.0
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh----cCCCeEEEechhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE----ANVPFITVSGSEFL 616 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e----agvpfi~Is~se~~ 616 (1036)
....|.+++|.+...+++++-+..+ ++....||++|++||||+++|++|+.. .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567999999999888888877763 233456999999999999999999753 36799999999876
Q ss_pred hh-------------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc--C--
Q psy5440 617 EM-------------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG--F-- 679 (1036)
Q Consensus 617 e~-------------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg--~-- 679 (1036)
+. |.| ....-..+|+.|... +||+|||+.+-+ +....+-.+|++-.- +
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCC
Confidence 53 233 223334567766555 899999998832 222333333333110 1
Q ss_pred --cCCCCeEEEEecCCC--ccccH--HhhCCCCcceEEEecCCChhhH----HHHHHHhcC----CCCCC--CCh-hhHH
Q psy5440 680 --NTTTNVVVLAATNRV--DVLDK--ALLRPGRFDRQIFVPAPDIKGR----ASIFKVHLK----PLKTD--LDR-DDLS 742 (1036)
Q Consensus 680 --~~~~~ViVIaaTN~p--d~LDp--ALlRpGRFdr~I~i~~Pd~eeR----~~IL~~~L~----~l~~~--l~~-~~l~ 742 (1036)
....+|.+|+|||.. +.+-. .|.+. |+...|.+ |...+| ..+++++++ .+..+ ... +...
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~L--PpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITL--PPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecC--CChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 123579999999832 12222 23321 44444555 554444 334444443 22211 112 2222
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 743 RKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 743 ~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
..++...+| +-++|+|++..++..+
T Consensus 285 ~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 285 ALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred HHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 233333344 3466777776665544
No 200
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.00 E-value=1.1e-09 Score=132.39 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=70.5
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
...+|++++|.+.+.+++.+.+..+. .....|||+|++|||||++|++|+... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 34689999999999999988887753 234579999999999999999999864 57999999987643
Q ss_pred hh-----ccCchh-------HHHHHHHHhhcCCCeEEEEcCchhhh
Q psy5440 618 MF-----VGVGPS-------RVRDMFSMARKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 618 ~~-----vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~ 651 (1036)
.. .|.... .....|+.| ...+|||||||.+.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~ 303 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS 303 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC
Confidence 21 121100 001123333 24689999999983
No 201
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.00 E-value=2.2e-09 Score=110.89 Aligned_cols=132 Identities=29% Similarity=0.423 Sum_probs=84.4
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-----h
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-----F 619 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-----~ 619 (1036)
|+|.+.+.+++.+.+..+ +..+..|||+|++||||+++|++|.+.. +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888887775 3445679999999999999999999865 579999999876432 2
Q ss_pred ccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc--C---c----CCC
Q psy5440 620 VGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG--F---N----TTT 683 (1036)
Q Consensus 620 vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg--~---~----~~~ 683 (1036)
.|... ..-..+|++|... +||||||+.+.. .+...|+..|+. + . ..-
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHH--------------HHHHHHHHHHhhchhccccccccccc
Confidence 23211 1123677777665 899999999842 233344444431 1 1 123
Q ss_pred CeEEEEecCCCccccHHhhCCCCcce
Q psy5440 684 NVVVLAATNRVDVLDKALLRPGRFDR 709 (1036)
Q Consensus 684 ~ViVIaaTN~pd~LDpALlRpGRFdr 709 (1036)
++.||++|+.+- ..+...|+|..
T Consensus 134 ~~RiI~st~~~l---~~~v~~g~fr~ 156 (168)
T PF00158_consen 134 DVRIIASTSKDL---EELVEQGRFRE 156 (168)
T ss_dssp -EEEEEEESS-H---HHHHHTTSS-H
T ss_pred cceEEeecCcCH---HHHHHcCCChH
Confidence 799999999643 34555678843
No 202
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.00 E-value=8.8e-10 Score=135.81 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=95.6
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh-
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE- 617 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e- 617 (1036)
..+|++++|.+.+.+++.+.+..+. .....|||+|++||||+++|++|+... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999999888887776642 234569999999999999999999865 47999999987632
Q ss_pred ----hhccCc----hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----cC---
Q psy5440 618 ----MFVGVG----PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----NT--- 681 (1036)
Q Consensus 618 ----~~vG~~----~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----~~--- 681 (1036)
...|.. .......|+.| ...+||||||+.+-. . ....|+..++.- ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~-----------~---~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP-----------E---LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH-----------H---HHHHHHHHHhcCcEEeCCCCce
Confidence 122211 00011123333 346899999999832 2 223333333311 11
Q ss_pred -CCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHH
Q psy5440 682 -TTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRA 722 (1036)
Q Consensus 682 -~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~ 722 (1036)
+-++.||+|||..- ..+...|+|.. .+.+..|...+|.
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhh
Confidence 12678999998653 34444455532 3455556666663
No 203
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.00 E-value=4.7e-10 Score=118.70 Aligned_cols=46 Identities=41% Similarity=0.612 Sum_probs=35.4
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.|+||+|++++|..|.-.+. | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999998864332 2 3589999999999999999999844
No 204
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=1.2e-09 Score=113.07 Aligned_cols=111 Identities=30% Similarity=0.376 Sum_probs=75.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCC----CeEEEechhhhhhhccCchhHHHHHHHHhh----cCCCeEEEEcCchhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANV----PFITVSGSEFLEMFVGVGPSRVRDMFSMAR----KHAPCILFIDEIDAVG 651 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagv----pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~ 651 (1036)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+. .....||||||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 35899999999999999999999996 9999999998761 111112222222111 1111399999999997
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHhhcCc---------CCCCeEEEEecCCCc
Q psy5440 652 RKRGGRNFGGHSEQENTLNQLLVEMDGFN---------TTTNVVVLAATNRVD 695 (1036)
Q Consensus 652 ~~r~~~~~~~~~e~~~~LnqLL~emDg~~---------~~~~ViVIaaTN~pd 695 (1036)
+.. ..+.+.....+.+.||..||+-. ...++++|+|+|.-.
T Consensus 82 ~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 751 22234455677888888887531 134789999999655
No 205
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.99 E-value=8.6e-09 Score=128.12 Aligned_cols=201 Identities=21% Similarity=0.302 Sum_probs=124.5
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~ 618 (1036)
+.+|++++|.+.+.+.+.+.+..+. .....|||+|++|||||++|++|+... +.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4679999999999999988887752 234579999999999999999998854 579999999875331
Q ss_pred -----hccCc-------hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-------
Q psy5440 619 -----FVGVG-------PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF------- 679 (1036)
Q Consensus 619 -----~vG~~-------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~------- 679 (1036)
..|.. .......|+.|. ..+|||||||.+.. .....|+..++.-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCCC
Confidence 12210 011223455443 35899999999832 2233444433321
Q ss_pred --cCCCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHHHHH----HHhcCCCCCCCChhhHHHHHh
Q psy5440 680 --NTTTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRASIF----KVHLKPLKTDLDRDDLSRKLA 746 (1036)
Q Consensus 680 --~~~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~~IL----~~~L~~l~~~l~~~~l~~~LA 746 (1036)
....++.+|++|+..- ..+...|+|.. .+.+..|...+|.+=+ +.++..+ .....
T Consensus 505 ~~~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~---------~~~~~ 572 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDL---KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKI---------ARRMG 572 (686)
T ss_pred CCcccceEEEEEeCCCCH---HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHH---------HHHcC
Confidence 1124689999998653 22233334432 3556667776665422 2222211 11111
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 747 ALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 747 ~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
....+++ ..++.++.+..++-+..+++.++++.+.
T Consensus 573 ~~~~~~s---------~~al~~L~~y~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 573 RNIDSIP---------AETLRTLSNMEWPGNVRELENVIERAVL 607 (686)
T ss_pred CCCCCcC---------HHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 1112333 3455667778899999999988888764
No 206
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=1e-08 Score=114.97 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=104.7
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC---------------------
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN--------------------- 604 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag--------------------- 604 (1036)
+++++.+++...+...+..-. +.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888877776665321 3455799999999999999999999886
Q ss_pred ---CCeEEEechhhhhhhccCchhHHHHHHHHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 605 ---VPFITVSGSEFLEMFVGVGPSRVRDMFSMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 605 ---vpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
-.++.++.++-... ......++++-+..... ..-||+|||+|.+.. ...|.++..|+
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhc
Confidence 25666666653321 12334555554443322 347999999999943 56677877776
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFK 726 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~ 726 (1036)
..+.+..+|.+||.+..|-+.+++ |+ ..+.|.+|+...+....+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 356788999999999999999998 66 457887765544444433
No 207
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=9e-09 Score=116.44 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=121.3
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe----------EEEech
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF----------ITVSGS 613 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf----------i~Is~s 613 (1036)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|+++|..+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 599999999999999888755 35577899999999999999999999763321 111111
Q ss_pred hhhhhh-----cc--------------------CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChh
Q psy5440 614 EFLEMF-----VG--------------------VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSE 664 (1036)
Q Consensus 614 e~~e~~-----vG--------------------~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e 664 (1036)
|+.-.+ -| -....+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 211000 01 012346666554432 234799999999883
Q ss_pred HHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHH
Q psy5440 665 QENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRK 744 (1036)
Q Consensus 665 ~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~ 744 (1036)
....|.||..|+.. + +.++|..|+.++.|-|++++ |+ ..+.|++|+.++..++|........ .+ .....
T Consensus 138 -~~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~--~~~~~ 206 (314)
T PRK07399 138 -EAAANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LN--INFPE 206 (314)
T ss_pred -HHHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--ch--hHHHH
Confidence 24568888888743 3 55677788899999999999 76 6699999999999999987643211 11 11234
Q ss_pred HhhcCCCCCHHHHHHHH
Q psy5440 745 LAALTPGFTGADIANVC 761 (1036)
Q Consensus 745 LA~~T~G~SgaDL~~Lv 761 (1036)
++....| ++++..+++
T Consensus 207 l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 207 LLALAQG-SPGAAIANI 222 (314)
T ss_pred HHHHcCC-CHHHHHHHH
Confidence 5556655 344444333
No 208
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=8.3e-09 Score=125.71 Aligned_cols=203 Identities=11% Similarity=0.103 Sum_probs=119.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE-Ee---chh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT-VS---GSE 614 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~-Is---~se 614 (1036)
.....+++||+|+++..++|..++..... +....+.++|+||||||||++++++|++++..++. ++ |..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 34567899999999999988877765322 12223458999999999999999999998765433 11 110
Q ss_pred hh----------hhh--ccCchhHHHHHHHHhhc----------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 615 FL----------EMF--VGVGPSRVRDMFSMARK----------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 615 ~~----------e~~--vG~~~~~vr~lF~~Ar~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
.. ..+ +......++.++..+.. ....|||||||+.+... ....+..+
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~l 218 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEI 218 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHH
Confidence 00 000 01122344555555542 24579999999987521 11234444
Q ss_pred HH-HhhcCcCCCCeEEEEecC-CCc--------------cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC---
Q psy5440 673 LV-EMDGFNTTTNVVVLAATN-RVD--------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK--- 733 (1036)
Q Consensus 673 L~-emDg~~~~~~ViVIaaTN-~pd--------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~--- 733 (1036)
|. ... ....+.+|++++ .+. .|.++|+...|. ..|.|.+.+.....+.|+..+....
T Consensus 219 Lr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 219 LRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 44 221 123333333333 121 244788853355 3699999999997777777765322
Q ss_pred -CC--CChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 734 -TD--LDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 734 -~~--l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
.. +..+..+..|+... .+||+.+++.--..
T Consensus 295 ~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFS 327 (637)
T ss_pred ccccccCCHHHHHHHHHhC----CChHHHHHHHHHHH
Confidence 11 22234555666644 45888888754433
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.96 E-value=7.9e-09 Score=124.45 Aligned_cols=205 Identities=18% Similarity=0.273 Sum_probs=118.4
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
...+|++++|.+.+.+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 45789999999998888877776542 234569999999999999999997654 46999999987643
Q ss_pred h-----hccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh--hcC----
Q psy5440 618 M-----FVGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM--DGF---- 679 (1036)
Q Consensus 618 ~-----~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em--Dg~---- 679 (1036)
. ..|... ..-..+|+.|. ...|||||||.+.. .....|-++|..- ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCCCCc
Confidence 1 122211 11123455553 35899999999842 2222233333221 001
Q ss_pred cCCCCeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhhHHH-H---HHHhcCCCCCCCChhhHHHHHhhc
Q psy5440 680 NTTTNVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKGRAS-I---FKVHLKPLKTDLDRDDLSRKLAAL 748 (1036)
Q Consensus 680 ~~~~~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~eeR~~-I---L~~~L~~l~~~l~~~~l~~~LA~~ 748 (1036)
....++.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ | +..++.... ......
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~---------~~~g~~ 402 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFA---------DEQGVP 402 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHH---------HHcCCC
Confidence 1123678999987653 23334444 443 25555666666552 2 222222110 001111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 749 TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 749 T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
..+++ ..++.++.++.++-+..+++.++++.+.
T Consensus 403 ~~~ls---------~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 403 RPKLA---------ADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred CCCcC---------HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 12233 2344455566777777777777777654
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.94 E-value=1.1e-08 Score=116.68 Aligned_cols=84 Identities=23% Similarity=0.216 Sum_probs=65.8
Q ss_pred ccc-ccccChHHHHHHHHHHHHhcCchhHhhhcCC-CCceeEEeCCCCCcHHHHHHHHHHhcCC-------CeEEEec--
Q psy5440 544 RFK-DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK-IPKGAMLTGPPGTGKTLLAKATAGEANV-------PFITVSG-- 612 (1036)
Q Consensus 544 ~F~-DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~-~pkGvLL~GPPGTGKTlLAkAIA~eagv-------pfi~Is~-- 612 (1036)
-|+ |++|++++++++.+.+.... .|.. ..+.++|+||||+|||+||++||+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 89999999777766554432 1222 3467899999999999999999999977 9999998
Q ss_pred --hhhhhhhccCchhHHHHHHHHh
Q psy5440 613 --SEFLEMFVGVGPSRVRDMFSMA 634 (1036)
Q Consensus 613 --se~~e~~vG~~~~~vr~lF~~A 634 (1036)
+.+.+...+.....+|+.|.+.
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 8888888888888877777543
No 211
>KOG0741|consensus
Probab=98.94 E-value=1.5e-08 Score=117.18 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe-chhhhhhhccCchhHHHHHHHH
Q psy5440 555 KVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS-GSEFLEMFVGVGPSRVRDMFSM 633 (1036)
Q Consensus 555 K~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is-~se~~e~~vG~~~~~vr~lF~~ 633 (1036)
.++-..++..+++++++ .-..+||+||||+|||.||-.+|...+.||+.+- ..+++.+.-...-..++..|+.
T Consensus 520 l~~G~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFED 593 (744)
T ss_pred HhhHHHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHH
Confidence 33444566667777663 3357999999999999999999999999999864 4444433222233568999999
Q ss_pred hhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCC-CeEEEEecCCCccccH-HhhCCCCcceEE
Q psy5440 634 ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTT-NVVVLAATNRVDVLDK-ALLRPGRFDRQI 711 (1036)
Q Consensus 634 Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~-~ViVIaaTN~pd~LDp-ALlRpGRFdr~I 711 (1036)
|.+..-+||++|+|+.|..--. -+....+.++..|+..+....+.+ ..+|++||.+.+.|.. .++. .|+..|
T Consensus 594 AYkS~lsiivvDdiErLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i 667 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTI 667 (744)
T ss_pred hhcCcceEEEEcchhhhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhhee
Confidence 9998889999999998863211 123455677788888877655544 4677777776665433 3444 789999
Q ss_pred EecCCCh-hhHHHHHHH
Q psy5440 712 FVPAPDI-KGRASIFKV 727 (1036)
Q Consensus 712 ~i~~Pd~-eeR~~IL~~ 727 (1036)
.+|..+. ++..+++..
T Consensus 668 ~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 668 HVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ecCccCchHHHHHHHHH
Confidence 9976654 566666653
No 212
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=1.4e-08 Score=126.58 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=123.0
Q ss_pred eEEeC--CCCCcHHHHHHHHHHhc-----CCCeEEEechhhhhhhccCchhHHHHHHHHhhcCC------CeEEEEcCch
Q psy5440 582 AMLTG--PPGTGKTLLAKATAGEA-----NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHA------PCILFIDEID 648 (1036)
Q Consensus 582 vLL~G--PPGTGKTlLAkAIA~ea-----gvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~a------P~ILfIDEID 648 (1036)
-+..| |++.|||++|+|+|+++ +.+++.+|+++... ...+|++...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46668 99999999999999997 56899999998432 346777766544332 2599999999
Q ss_pred hhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHh
Q psy5440 649 AVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVH 728 (1036)
Q Consensus 649 aL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~ 728 (1036)
.+.. ...+.|+..|+. .+.++.+|++||.+..+.++|++ |+ ..+.|++|+.++...+|+..
T Consensus 641 ~Lt~--------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9832 346777777773 45688999999999999999998 76 67999999999999888887
Q ss_pred cCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q psy5440 729 LKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQA 784 (1036)
Q Consensus 729 L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~A 784 (1036)
+......++. ..+..++..+.| +.+...++++.++. ....|+.+++..+
T Consensus 702 ~~~Egi~i~~-e~L~~Ia~~s~G-DlR~AIn~Lq~~~~-----~~~~It~~~V~~~ 750 (846)
T PRK04132 702 AENEGLELTE-EGLQAILYIAEG-DMRRAINILQAAAA-----LDDKITDENVFLV 750 (846)
T ss_pred HHhcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHHHHH-----hcCCCCHHHHHHH
Confidence 7654433444 455678888776 33444444443321 1245777665543
No 213
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.93 E-value=1.9e-08 Score=119.73 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=128.6
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC----------CeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV----------PFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv----------pfi~Is~ 612 (1036)
..|.++.|+..+++.+. . .+.....++|+||||+|||++++.+++.+.- .++++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~----l----------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE----I----------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh----e----------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47999999987776542 1 1223457999999999999999999985421 1111111
Q ss_pred h----------hhhhh--------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHH
Q psy5440 613 S----------EFLEM--------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLV 674 (1036)
Q Consensus 613 s----------e~~e~--------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~ 674 (1036)
. -|... .+|.+...-...+..|.. .+|||||++.+. ..++..|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~--------------~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE--------------RRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC--------------HHHHHHHHH
Confidence 1 01110 122221111234455544 499999998762 245556665
Q ss_pred HhhcCc-----------CCCCeEEEEecCCCc---------------------cccHHhhCCCCcceEEEecCCChh---
Q psy5440 675 EMDGFN-----------TTTNVVVLAATNRVD---------------------VLDKALLRPGRFDRQIFVPAPDIK--- 719 (1036)
Q Consensus 675 emDg~~-----------~~~~ViVIaaTN~pd---------------------~LDpALlRpGRFdr~I~i~~Pd~e--- 719 (1036)
.|+.-. .+.++.+|+|+|... .|..+++. |||.++.++.|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 553211 245789999999742 47789999 99999999987432
Q ss_pred -------hHHHHHHHhcC----------CCCCCCChhhHHH---------H-H--hhcCCCCCHHHHHHHHHHHHHHHHH
Q psy5440 720 -------GRASIFKVHLK----------PLKTDLDRDDLSR---------K-L--AALTPGFTGADIANVCNEAALIAAR 770 (1036)
Q Consensus 720 -------eR~~IL~~~L~----------~l~~~l~~~~l~~---------~-L--A~~T~G~SgaDL~~LvneAal~A~r 770 (1036)
.+..|-+.... ..+..+....+.+ . + +....|.|.+....+++-|..+|..
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 12222211110 0111111111111 0 1 1234578889999999999999999
Q ss_pred hcCCcccHHHHHHHHHH
Q psy5440 771 DLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 771 ~~~~~It~~d~~~Aier 787 (1036)
++++.|+.+|+.+|+.-
T Consensus 475 ~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 475 DQSDIITRQHLQEAVSY 491 (506)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 99999999999999874
No 214
>KOG0728|consensus
Probab=98.92 E-value=1.1e-09 Score=116.66 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=61.6
Q ss_pred CCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
-++-||+-|+|+|....|++|++++ .|+|+.|..||+.-||||||||| |||+||+|+|.-+. -.|+|.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~--c~firv 212 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRV 212 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc--eEEEEe
Confidence 4667999999999999999999999 99999999999999999999999 99999999998665 345554
No 215
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.92 E-value=1.3e-09 Score=126.59 Aligned_cols=66 Identities=27% Similarity=0.458 Sum_probs=62.5
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.++++|+||+|+++++++|++.+++ |++|+.|..+|...|+||||||| |||++|+|+|.+++..
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 456889999999999999999999998 99999999999999999999999 9999999999999854
No 216
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.5e-08 Score=115.29 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=108.6
Q ss_pred ccccccc-ChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-ech-
Q psy5440 544 RFKDVAG-CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-SGS- 613 (1036)
Q Consensus 544 ~F~DV~G-~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s~s- 613 (1036)
.|++|+| ++.+++.|...+.. .++|..+||+||+|+|||++|+++|+.+.++- -.+ +|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888999 88888888776643 35677889999999999999999999764421 000 000
Q ss_pred -------hhhhh-hcc--CchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC
Q psy5440 614 -------EFLEM-FVG--VGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF 679 (1036)
Q Consensus 614 -------e~~e~-~vG--~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~ 679 (1036)
++.-. ..| ..-..+|++.+.+.. ...-|++|||+|.+. ....|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEE- 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcC-
Confidence 11000 001 122456666655432 223699999999883 2466888888883
Q ss_pred cCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHH
Q psy5440 680 NTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 680 ~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
.+.++++|.+|+.+..|-|++++ |. ..+.+.+|+.++..++|+.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 56788888889889999999999 66 5689999999888777764
No 217
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.89 E-value=1.5e-09 Score=127.35 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=61.6
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
++.+.++|+||+|+++++++|++++++ |.+|+.|..+|...|+||||||| |||++|+|+|++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 456789999999999999999999998 99999999999999999999999 999999999999874
No 218
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.89 E-value=5.8e-08 Score=111.32 Aligned_cols=231 Identities=23% Similarity=0.342 Sum_probs=139.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEE----
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------NVPFITV---- 610 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~I---- 610 (1036)
...|.-++|++..|..|.-- --+|+. .|+|+.|+.|||||+++||||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 57799999999988877321 222322 589999999999999999999966 3322100
Q ss_pred --echh-------------------hhhhhccCchhHH------HHHHH----------HhhcCCCeEEEEcCchhhhhc
Q psy5440 611 --SGSE-------------------FLEMFVGVGPSRV------RDMFS----------MARKHAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 611 --s~se-------------------~~e~~vG~~~~~v------r~lF~----------~Ar~~aP~ILfIDEIDaL~~~ 653 (1036)
.|.+ |++.-.|.++.++ ....+ .|+.+ ..||||||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 1111 2222233444432 11111 12222 2599999998773
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhc---------C--cCCCCeEEEEecCCCc-cccHHhhCCCCcceEEEecCC-Chhh
Q psy5440 654 RGGRNFGGHSEQENTLNQLLVEMDG---------F--NTTTNVVVLAATNRVD-VLDKALLRPGRFDRQIFVPAP-DIKG 720 (1036)
Q Consensus 654 r~~~~~~~~~e~~~~LnqLL~emDg---------~--~~~~~ViVIaaTN~pd-~LDpALlRpGRFdr~I~i~~P-d~ee 720 (1036)
.++.+.||+.+.. + ..+.++++|+|+|..+ .|-|.|+. ||...|.+..| +.++
T Consensus 158 ------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 158 ------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred ------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 2566777765542 2 3345799999999754 78899999 99999999765 7899
Q ss_pred HHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHH-HHHHHHHH-HcCccccccc
Q psy5440 721 RASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKH-FEQAIERV-VAGMEKKTNV 798 (1036)
Q Consensus 721 R~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d-~~~Aierv-i~gle~~~~~ 798 (1036)
|.+|.+..+.- ..+++.+++.++... .. ++ +.+.++++....+...+ +...+..+ ... .
T Consensus 224 rv~Ii~r~~~f---~~~Pe~f~~~~~~~~--------~~-lR-~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~-----~- 284 (423)
T COG1239 224 RVEIIRRRLAF---EAVPEAFLEKYADAQ--------RA-LR-ARIIAARSLLSEVELDDDAETKIAELCARL-----A- 284 (423)
T ss_pred HHHHHHHHHHh---hcCcHHHHHHHHHHH--------HH-HH-HHHHHHHhccccccCcHHHHHHHHHHHHHh-----c-
Confidence 99999887653 245566666555322 12 22 33445555544443322 22222222 211 1
Q ss_pred cccccchhhhHhhhhHHHHHhhh
Q psy5440 799 LQPEEKKTVAYHEAGHAVAGWFL 821 (1036)
Q Consensus 799 l~~~e~~~vA~HEaGHAlv~~~l 821 (1036)
+.. .+..+.++.++.|+++|--
T Consensus 285 v~g-~radi~~~r~a~a~aa~~G 306 (423)
T COG1239 285 VDG-HRADIVVVRAAKALAALRG 306 (423)
T ss_pred cCC-CchhhHHHHHHHHHHHhcC
Confidence 111 4566778888888888753
No 219
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=2e-08 Score=114.21 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=98.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-ec--------hhhhhhhc-----cCchhHHHHHHHHh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-SG--------SEFLEMFV-----GVGPSRVRDMFSMA 634 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s~--------se~~e~~v-----G~~~~~vr~lF~~A 634 (1036)
.+.|..+||+||+|+|||++|+++|+.+.+.- -.+ +| .++..... .-+-..+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999999775421 000 01 11110000 12335677776655
Q ss_pred hc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceE
Q psy5440 635 RK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQ 710 (1036)
Q Consensus 635 r~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~ 710 (1036)
.. ...-|++||++|.+. ....|.||..|+. .+.++++|.+|+.++.|.|++++ |+. .
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred hhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 43 334689999999984 2567888888884 56789999999999999999999 884 4
Q ss_pred EEecCCChhhHHHHHHHhc
Q psy5440 711 IFVPAPDIKGRASIFKVHL 729 (1036)
Q Consensus 711 I~i~~Pd~eeR~~IL~~~L 729 (1036)
+.|++|+.++..+.|....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 9999999999888887664
No 220
>KOG0732|consensus
Probab=98.88 E-value=1.1e-09 Score=136.38 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc---eeeeeeecc
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL---ERFLLHNIN 209 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~---~~~~~~~~~ 209 (1036)
+..|+|+||+|+++.+.+|+|+|.+ |.+|+.|..++..+|||||+||| |||++|+|+|.+|.+. ++||+||--
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999999 99999999999999999999999 9999999999999877 888888877
Q ss_pred CC-ccchhhhhhhccccc
Q psy5440 210 HG-RYSSFHINNSLATLP 226 (1036)
Q Consensus 210 ~~-~~~~~~~~~~~~~~~ 226 (1036)
+| ++..-|-.|+|.+|.
T Consensus 339 D~lskwvgEaERqlrllF 356 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLF 356 (1080)
T ss_pred hhhccccCcHHHHHHHHH
Confidence 76 355567777777774
No 221
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.87 E-value=2.7e-08 Score=123.73 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=91.6
Q ss_pred cccChHHHHHHHHHHHHhcCchhH-----------hhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-------CCeEE
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQY-----------IDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-------VPFIT 609 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~-----------~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-------vpfi~ 609 (1036)
|.|++.+|..|. +..+....+. .....+-..+|||+|+||||||.+|++++..+. .++..
T Consensus 452 I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 452 IKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred EECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 789999998773 2223222110 011234455799999999999999999998542 35555
Q ss_pred Eechhhhhhh-ccCchhHH-HHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------
Q psy5440 610 VSGSEFLEMF-VGVGPSRV-RDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------- 679 (1036)
Q Consensus 610 Is~se~~e~~-vG~~~~~v-r~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------- 679 (1036)
+.+..+.... ...+...+ ...+..| ...+++|||+|.+.. .....|+..|+.-
T Consensus 530 vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~--------------~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHN--------------ESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCCH--------------HHHHHHHHHHhCCEEEEecCC
Confidence 5544432100 00010000 0011112 235999999999832 2334445555321
Q ss_pred ---cCCCCeEEEEecCCCc-------------cccHHhhCCCCcceEEEe-cCCChhhHHHHH
Q psy5440 680 ---NTTTNVVVLAATNRVD-------------VLDKALLRPGRFDRQIFV-PAPDIKGRASIF 725 (1036)
Q Consensus 680 ---~~~~~ViVIaaTN~pd-------------~LDpALlRpGRFdr~I~i-~~Pd~eeR~~IL 725 (1036)
.-+.++.||||+|... .|+++|++ |||..+.+ +.|+.+.=..|.
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHH
Confidence 1235789999999632 57899999 99987544 677765544443
No 222
>KOG2680|consensus
Probab=98.84 E-value=7.4e-08 Score=105.21 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~ 773 (1036)
|.-++-.|+. |. ..|...+++.++..+||+..+......++.+++ +.|.......|-+-..+|+..|.+.+.++..
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~-d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~ 414 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDAL-DLLTKIGEATSLRYAIHLITAASLVCLKRKG 414 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 5677778877 55 456777899999999999999865544554433 4556555566677788899999999999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy5440 774 TTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 774 ~~It~~d~~~Aiervi~ 790 (1036)
..+..+|+..+.+-.+-
T Consensus 415 ~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 415 KVVEVDDIERVYRLFLD 431 (454)
T ss_pred ceeehhHHHHHHHHHhh
Confidence 99999999998876543
No 223
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.83 E-value=3e-09 Score=126.59 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=63.6
Q ss_pred ecCCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 133 ~~~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+.++.++++|+||+|+++++++|++.|.+ +++|+.|.++|.+.|+|+||||| |||++|||+|++++..
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34567899999999999999999999988 99999999999999999999999 9999999999999755
No 224
>PRK08116 hypothetical protein; Validated
Probab=98.79 E-value=4.2e-08 Score=108.72 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=78.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhc----cCchhHHHHHHHHhhcCCCeEEEEcCchhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFV----GVGPSRVRDMFSMARKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~v----G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 651 (1036)
+.|++|+|+||||||+||.|+|+++ +.+++.++.++++..+. +.......++++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 78999999988876532 111122233444333 23599999995431
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC-cc----ccHHhhCCCCc---ceEEEecCCChhhHHH
Q psy5440 652 RKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV-DV----LDKALLRPGRF---DRQIFVPAPDIKGRAS 723 (1036)
Q Consensus 652 ~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p-d~----LDpALlRpGRF---dr~I~i~~Pd~eeR~~ 723 (1036)
..+.....+..++ +... ..+..+|.|||.+ +. ++..+.+ |+ ...|.+..||. |..
T Consensus 192 ---------~t~~~~~~l~~ii---n~r~-~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ---------DTEWAREKVYNII---DSRY-RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ---------CCHHHHHHHHHHH---HHHH-HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 1222233333343 3322 2334577777764 33 4566666 53 33466666664 444
Q ss_pred HHHH
Q psy5440 724 IFKV 727 (1036)
Q Consensus 724 IL~~ 727 (1036)
+.+.
T Consensus 255 ~~~e 258 (268)
T PRK08116 255 IAKE 258 (268)
T ss_pred HHHH
Confidence 4443
No 225
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.79 E-value=5.8e-09 Score=120.22 Aligned_cols=66 Identities=29% Similarity=0.471 Sum_probs=62.3
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.+.++|+||+|+++++++|++.+.+ +++|+.|..+|...|+||||||| |||++|+++|.+++..
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 456889999999999999999999988 99999999999999999999999 9999999999999854
No 226
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-08 Score=115.98 Aligned_cols=145 Identities=27% Similarity=0.344 Sum_probs=88.1
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CC-eEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VP-FITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vp-fi~Is 611 (1036)
...|.||+|++.+|+.+.... .-.+++||+||||||||++|+.+.+-+- +. +.+++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 457999999999999886433 2246899999999999999999887431 00 00111
Q ss_pred chhhhhh----------hccCchhHHHHHHH--------HhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 612 GSEFLEM----------FVGVGPSRVRDMFS--------MARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 612 ~se~~e~----------~vG~~~~~vr~lF~--------~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
+ ++.+. +.+.+.+ ...+.. +.......||||||+-.+ ..++|+.|.
T Consensus 241 g-~~~~~~~~~~~rPFr~PHHsaS-~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef--------------~~~iLe~LR 304 (490)
T COG0606 241 G-DLHEGCPLKIHRPFRAPHHSAS-LAALVGGGGVPRPGEISLAHNGVLFLDELPEF--------------KRSILEALR 304 (490)
T ss_pred c-cccccCccceeCCccCCCccch-HHHHhCCCCCCCCCceeeecCCEEEeeccchh--------------hHHHHHHHh
Confidence 1 00000 0111111 011110 011122369999998554 347888888
Q ss_pred HHhhcC-----------cCCCCeEEEEecCCCc-----------------------cccHHhhCCCCcceEEEecCCCh
Q psy5440 674 VEMDGF-----------NTTTNVVVLAATNRVD-----------------------VLDKALLRPGRFDRQIFVPAPDI 718 (1036)
Q Consensus 674 ~emDg~-----------~~~~~ViVIaaTN~pd-----------------------~LDpALlRpGRFdr~I~i~~Pd~ 718 (1036)
+-|+.- .-..++.+|+|+|..- .|...|++ |||..+.++.++.
T Consensus 305 ~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 305 EPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred CccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 877642 1124578888988311 34556777 9999999988764
No 227
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.76 E-value=6.8e-08 Score=99.24 Aligned_cols=133 Identities=22% Similarity=0.321 Sum_probs=88.9
Q ss_pred cChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-----------------------
Q psy5440 550 GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP----------------------- 606 (1036)
Q Consensus 550 G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp----------------------- 606 (1036)
|++++.+.|.+.+.. .+.|..+||+||+|+||+++|+++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677777777666543 3567789999999999999999999976332
Q ss_pred eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC
Q psy5440 607 FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT 682 (1036)
Q Consensus 607 fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~ 682 (1036)
++.++...-. ..-....+|++...+.. ...-|++|||+|.+. ....|.||..|+ ..+
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LE--epp 130 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLE--EPP 130 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHH--STT
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhc--CCC
Confidence 2222211100 01234667777666543 234699999999984 356788998888 466
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcceEEEecC
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~ 715 (1036)
.++++|.+|+.++.|-|.+++ |. ..+.+++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 789999999999999999999 77 4466644
No 228
>KOG0745|consensus
Probab=98.74 E-value=2.9e-08 Score=112.84 Aligned_cols=99 Identities=28% Similarity=0.464 Sum_probs=71.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hhccCchh-HHHHHHHHhh----cCCCeEEEEcCchhhhhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MFVGVGPS-RVRDMFSMAR----KHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~vG~~~~-~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r 654 (1036)
+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+.-. .+..++..|. +....||||||+|.|..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 6999999999999999999999999999999998875 47776443 4455555442 2234699999999998543
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcC
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGF 679 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~ 679 (1036)
......-+-..+.+...||..++|.
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred ccccccccccchhHHHHHHHHhccc
Confidence 3221111223345667777777763
No 229
>KOG1514|consensus
Probab=98.72 E-value=3.6e-07 Score=109.50 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=140.7
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEechhhhh
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSGSEFLE 617 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~se~~e 617 (1036)
+.+-+....+|..++...-.++ .. ...+.+.|-||||||.+++.+-.++ ..+++.||+-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~---~~----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ---GL----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC---CC----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 5667777777777776643331 11 1267899999999999999998855 35688888866654
Q ss_pred h----------hccCch------hHHHHHHHHh-hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc
Q psy5440 618 M----------FVGVGP------SRVRDMFSMA-RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN 680 (1036)
Q Consensus 618 ~----------~vG~~~------~~vr~lF~~A-r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~ 680 (1036)
+ +.|... ..+..-|... ....+|||+|||+|.|..+. ..++..++.--. .
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~ 537 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--L 537 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--C
Confidence 2 222211 1223333321 23457999999999997532 234444443221 2
Q ss_pred CCCCeEEEEecCCCccccHHhhCC---CCcc-eEEEecCCChhhHHHHHHHhcCCCCCC--CChhhHHHHHhhcCCCCCH
Q psy5440 681 TTTNVVVLAATNRVDVLDKALLRP---GRFD-RQIFVPAPDIKGRASIFKVHLKPLKTD--LDRDDLSRKLAALTPGFTG 754 (1036)
Q Consensus 681 ~~~~ViVIaaTN~pd~LDpALlRp---GRFd-r~I~i~~Pd~eeR~~IL~~~L~~l~~~--l~~~~l~~~LA~~T~G~Sg 754 (1036)
.+..++||+..|..+. ++.++-+ .|++ +.|.|.+++..+..+|+...|..+..- -..+.+++.+|..+ | ..
T Consensus 538 ~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavS-G-Da 614 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVS-G-DA 614 (767)
T ss_pred CCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcc-c-cH
Confidence 4557888888887663 3333321 1443 468999999999999999999876311 11233334444433 2 23
Q ss_pred HHHHHHHHHHHHHHHHhcC-------CcccHHHHHHHHHHHHcC
Q psy5440 755 ADIANVCNEAALIAARDLH-------TTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 755 aDL~~LvneAal~A~r~~~-------~~It~~d~~~Aiervi~g 791 (1036)
+....+|+.|+..|..+.. ..|++.|+.+|+..++..
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 4566789999998887765 568899999999887654
No 230
>KOG0651|consensus
Probab=98.70 E-value=1.1e-08 Score=112.30 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=60.4
Q ss_pred CccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
-.++|+.|.|+-+...||+|+|+. |+||+.|.++|+++|||+||||| |||++|+++|...+..
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 358999999999999999999999 99999999999999999999999 9999999999999955
No 231
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=9.8e-08 Score=108.99 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=97.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE---EEech--------------hhhhhhc------------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI---TVSGS--------------EFLEMFV------------------ 620 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi---~Is~s--------------e~~e~~v------------------ 620 (1036)
.++|.++||+||+|+||+++|+++|+.+.+.-- .-.|. ++.....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 478999999999999999999999997755220 00111 1100000
Q ss_pred -------------cCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCC
Q psy5440 621 -------------GVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTT 683 (1036)
Q Consensus 621 -------------G~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~ 683 (1036)
.-.-..+|++.+.+.. ..--|++||++|.+. ...-|.||..++ ..+.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCc
Confidence 0123456766655432 223599999999884 256788998888 5778
Q ss_pred CeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHh
Q psy5440 684 NVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVH 728 (1036)
Q Consensus 684 ~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~ 728 (1036)
++++|.+|++++.|.|++++ |+ ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99999999999999999999 88 67999999999999888764
No 232
>KOG0991|consensus
Probab=98.68 E-value=1e-07 Score=101.23 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=116.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-C----CCeEEEech
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-N----VPFITVSGS 613 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-g----vpfi~Is~s 613 (1036)
......+.||+|.++..+.|.-+...=.. | +++|.||||||||+-+.++|+++ | --++.+|+|
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnm-----------P-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNM-----------P-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCC-----------C-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 45567899999999999988766644222 2 58999999999999999999987 2 246677777
Q ss_pred hhhhhhccCchhHHH---HHHHHhhcCCC----eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeE
Q psy5440 614 EFLEMFVGVGPSRVR---DMFSMARKHAP----CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVV 686 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr---~lF~~Ar~~aP----~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~Vi 686 (1036)
+-. +-.-+| ..|.+-+-.-| -||++||.|++.. ...+.+...++.. .....
T Consensus 88 deR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiy-----S~ttR 145 (333)
T KOG0991|consen 88 DER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIY-----SNTTR 145 (333)
T ss_pred ccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHH-----cccch
Confidence 632 222333 35655554332 5999999999842 1223333333322 22346
Q ss_pred EEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 687 VLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 687 VIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
+..+||..+.+=+.+.+ |+- .+.+...+..+.+.-|....+..+.....+.+ +.+.-... +|+++.+|. +
T Consensus 146 FalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgL-eaiifta~----GDMRQalNn--L 215 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGL-EAIIFTAQ----GDMRQALNN--L 215 (333)
T ss_pred hhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchH-HHhhhhcc----chHHHHHHH--H
Confidence 77788887766666665 432 23444444444444444444333333333333 22332333 377777664 3
Q ss_pred HHHHhcCCcccHHHH
Q psy5440 767 IAARDLHTTIVMKHF 781 (1036)
Q Consensus 767 ~A~r~~~~~It~~d~ 781 (1036)
.+.-.+-..|+.+-+
T Consensus 216 Qst~~g~g~Vn~enV 230 (333)
T KOG0991|consen 216 QSTVNGFGLVNQENV 230 (333)
T ss_pred HHHhccccccchhhh
Confidence 344444455555443
No 233
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.67 E-value=2.6e-07 Score=113.05 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=66.9
Q ss_pred CeEEEEecCCC--ccccHHhhCCCCcc---eEEEec--CC-ChhhHHHHHHHhcCCC-----CCCCChhhHHHHH---hh
Q psy5440 684 NVVVLAATNRV--DVLDKALLRPGRFD---RQIFVP--AP-DIKGRASIFKVHLKPL-----KTDLDRDDLSRKL---AA 747 (1036)
Q Consensus 684 ~ViVIaaTN~p--d~LDpALlRpGRFd---r~I~i~--~P-d~eeR~~IL~~~L~~l-----~~~l~~~~l~~~L---A~ 747 (1036)
++.||+++|+. ..+||+|+. ||. ..+.++ .+ +.+.+..+++...+.. ...++.+.+...+ .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 67899999875 467999988 775 445554 22 3455566665443321 1235554443222 22
Q ss_pred cCCC-----CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 748 LTPG-----FTGADIANVCNEAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 748 ~T~G-----~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aier 787 (1036)
...- ..-++|.+++++|...|..++...++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2211 336899999999999999888889999999988764
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.66 E-value=1.5e-08 Score=99.68 Aligned_cols=111 Identities=31% Similarity=0.379 Sum_probs=59.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech-hhhh-hhccCchhHH-HHHHHHhhc-CCCeEEEEcCchhhhhcCCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGS-EFLE-MFVGVGPSRV-RDMFSMARK-HAPCILFIDEIDAVGRKRGG 656 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s-e~~e-~~vG~~~~~v-r~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~ 656 (1036)
++||.|+||+|||++|+++|+.++..|..|.+. ++.- ...|..--.. ...|+..+. --..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 489999999999999999999999999999874 3321 0111100000 000100000 001599999997653
Q ss_pred CCCCCChhHHHHHHHHHHHhhcC---------cCCCCeEEEEecCCCc-----cccHHhhCCCCc
Q psy5440 657 RNFGGHSEQENTLNQLLVEMDGF---------NTTTNVVVLAATNRVD-----VLDKALLRPGRF 707 (1036)
Q Consensus 657 ~~~~~~~e~~~~LnqLL~emDg~---------~~~~~ViVIaaTN~pd-----~LDpALlRpGRF 707 (1036)
.++.+.||+.|..- .-..++.||||-|..+ .|++|++. ||
T Consensus 76 ---------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ---------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 35677777777532 2345789999999876 78899998 87
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.65 E-value=1.6e-07 Score=102.71 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=80.6
Q ss_pred CCcccccccc-ChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 541 IGVRFKDVAG-CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 541 ~~v~F~DV~G-~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
..-+|++..- .++.+..+..+..+.++.. ....+++|+|+||||||+||.|+|.++ +..++.++.+++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 4567887753 3333333333333332211 113489999999999999999999987 7889999999988
Q ss_pred hhhccC---chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 617 EMFVGV---GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 617 e~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
..+... ......++++... ...+|+|||++... ..+....++.+++..- -...-.+|.+||.
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~R----y~~~~~tiitSNl 204 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRR----SSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHH----HhCCCCEEEeCCC
Confidence 643221 1112334454443 45799999998752 1234445667776542 1223467777885
Q ss_pred C
Q psy5440 694 V 694 (1036)
Q Consensus 694 p 694 (1036)
.
T Consensus 205 ~ 205 (244)
T PRK07952 205 N 205 (244)
T ss_pred C
Confidence 4
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.63 E-value=8e-08 Score=95.65 Aligned_cols=125 Identities=26% Similarity=0.385 Sum_probs=78.6
Q ss_pred ccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhhhhhccCchh
Q psy5440 549 AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFLEMFVGVGPS 625 (1036)
Q Consensus 549 ~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~e~~vG~~~~ 625 (1036)
+|...+.+++.+-+..+. .....|||+|++||||+++|++++...+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477788888888777763 2345699999999999999999998764 478888887643
Q ss_pred HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc-------ccc
Q psy5440 626 RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD-------VLD 698 (1036)
Q Consensus 626 ~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd-------~LD 698 (1036)
.++++.+ .+..|||+|||.+.. + ....|+..++... ..++.+|+++..+- .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~-----------~---~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP-----------E---AQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H-----------H---HHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCH-----------H---HHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchh
Confidence 4566665 445999999999842 2 2233333333222 45667777765432 355
Q ss_pred HHhhCCCCcc-eEEEec
Q psy5440 699 KALLRPGRFD-RQIFVP 714 (1036)
Q Consensus 699 pALlRpGRFd-r~I~i~ 714 (1036)
+.|.. ||. ..|.+|
T Consensus 122 ~~L~~--~l~~~~i~lP 136 (138)
T PF14532_consen 122 PDLYY--RLSQLEIHLP 136 (138)
T ss_dssp HHHHH--HCSTCEEEE-
T ss_pred HHHHH--HhCCCEEeCC
Confidence 56655 554 344443
No 237
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=8.5e-07 Score=100.74 Aligned_cols=135 Identities=14% Similarity=0.186 Sum_probs=97.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe--EEEec--------------hhhhhhh--cc--CchhHHHHHHHHhh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF--ITVSG--------------SEFLEMF--VG--VGPSRVRDMFSMAR 635 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf--i~Is~--------------se~~e~~--vG--~~~~~vr~lF~~Ar 635 (1036)
.+.|.++||+||+|+||+++|+++|+.+.+.- -.-.| .|+.... .| -+-..+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999999999764411 00011 1111000 01 23456777665544
Q ss_pred c----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEE
Q psy5440 636 K----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQI 711 (1036)
Q Consensus 636 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I 711 (1036)
. ..--|++||++|.+. ....|.||..|+ +++.++++|.+|+.++.|.|.+++ |. ..+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred hccccCCceEEEEechhhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 2 223699999999983 256788888888 477889999999999999999998 77 568
Q ss_pred EecCCChhhHHHHHHHhc
Q psy5440 712 FVPAPDIKGRASIFKVHL 729 (1036)
Q Consensus 712 ~i~~Pd~eeR~~IL~~~L 729 (1036)
.+++|+.++..+.|....
T Consensus 162 ~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999988888887653
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=6.5e-07 Score=101.48 Aligned_cols=154 Identities=16% Similarity=0.261 Sum_probs=103.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe----EEEechhhhh------h-hc-------c------CchhHHHHHH
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF----ITVSGSEFLE------M-FV-------G------VGPSRVRDMF 631 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf----i~Is~se~~e------~-~v-------G------~~~~~vr~lF 631 (1036)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.|..++. . ++ | .+-..||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46788999999999999999999998664320 0011111110 0 01 1 1234567766
Q ss_pred HHhhcC----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCc
Q psy5440 632 SMARKH----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRF 707 (1036)
Q Consensus 632 ~~Ar~~----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRF 707 (1036)
+.+... .--|++||++|.+. ....|.||..|+ ..+.++++|.+|+.++.|-|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh
Confidence 655432 22699999999983 246788888887 366788899999999999999999 77
Q ss_pred ceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHH
Q psy5440 708 DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGA 755 (1036)
Q Consensus 708 dr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~Sga 755 (1036)
..+.|+.|+.++..+.|... . ++... +..++..+.|-.+.
T Consensus 165 -q~i~~~~~~~~~~~~~L~~~----~--~~~~~-a~~~~~l~~G~p~~ 204 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLAQ----G--VSERA-AQEALDAARGHPGL 204 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHHc----C--CChHH-HHHHHHHcCCCHHH
Confidence 56899999998888777643 1 23222 23455566664433
No 239
>PRK12377 putative replication protein; Provisional
Probab=98.59 E-value=2.2e-07 Score=101.86 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=65.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccCc--hhHHHHHHHHhhcCCCeEEEEcCchhhhhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGVG--PSRVRDMFSMARKHAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~~--~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 653 (1036)
..+++|+||||||||+||.|||+++ +..++.++..+++......- .....++++.. ....+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3589999999999999999999977 67888899888876432110 01122333333 345699999997652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 654 RGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 654 r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
.......++.+++..-. ....-+|.|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 12334456666665422 2233456778854
No 240
>KOG2227|consensus
Probab=98.58 E-value=1.6e-06 Score=100.09 Aligned_cols=202 Identities=20% Similarity=0.262 Sum_probs=131.1
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEechhhhhh----
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGSEFLEM---- 618 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~se~~e~---- 618 (1036)
+.|.+..+..+++|+..-.. ..-+..+.+.|-||||||.+...+-.... ...++++|..+.+.
T Consensus 152 l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 67888888888877765322 33466789999999999999987765442 24588888764321
Q ss_pred ------h----ccCch-hHHHHHHHH-hhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCe
Q psy5440 619 ------F----VGVGP-SRVRDMFSM-ARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV 685 (1036)
Q Consensus 619 ------~----vG~~~-~~vr~lF~~-Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~V 685 (1036)
+ .+.+. ......|+. .... .+-||++||+|.|+.+.. .+|..| -++.. ..+..+
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~l-Fewp~-lp~sr~ 290 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTL-FEWPK-LPNSRI 290 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeee-hhccc-CCccee
Confidence 1 11111 122333432 2223 368999999999984321 122222 12222 245678
Q ss_pred EEEEecCCCccccHHhhC----CCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHH---
Q psy5440 686 VVLAATNRVDVLDKALLR----PGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIA--- 758 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlR----pGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~--- 758 (1036)
++|+..|..|.-|..|-| .+--...+.|++++.++..+||+..+............+...|+...|.|| |++
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaL 369 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKAL 369 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHH
Confidence 999999988866655543 233456789999999999999999998776555555566777888878774 555
Q ss_pred HHHHHHHHHHHHh
Q psy5440 759 NVCNEAALIAARD 771 (1036)
Q Consensus 759 ~LvneAal~A~r~ 771 (1036)
.+|+.|..++...
T Consensus 370 dv~R~aiEI~E~e 382 (529)
T KOG2227|consen 370 DVCRRAIEIAEIE 382 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665554
No 241
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.58 E-value=9e-07 Score=104.58 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=112.8
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh--
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-- 618 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-- 618 (1036)
.+.+++|.+.....+.+.+..+. .....+|++|++||||+++|++++... +.||+.++|..+.+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678898887777766555542 223469999999999999999998754 579999999876432
Q ss_pred ---hccCchh-------HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----c---
Q psy5440 619 ---FVGVGPS-------RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----N--- 680 (1036)
Q Consensus 619 ---~vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----~--- 680 (1036)
..|.... .....|+.| ...+|||||||.+.. .....|+..++.- .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPL--------------VLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCH--------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 1121100 001123222 235899999999842 1233444443321 1
Q ss_pred -CCCCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhh----c
Q psy5440 681 -TTTNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAA----L 748 (1036)
Q Consensus 681 -~~~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~----~ 748 (1036)
...++.||++||..- ..+.+.|+|.. .+.+..|...+|.+=+...+. .++..++. .
T Consensus 274 ~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~---------~~l~~~~~~~~~~ 341 (457)
T PRK11361 274 TIKVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLAN---------HFLQKFSSENQRD 341 (457)
T ss_pred eeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHH---------HHHHHHHHHcCCC
Confidence 123589999998643 34555566654 344555665555432111110 01111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 749 TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 749 T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
..+++ ..++.+.....++-+..++..++++.+.
T Consensus 342 ~~~~~---------~~a~~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 342 IIDID---------PMAMSLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred CCCcC---------HHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 12333 3344555666777777777777776543
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.58 E-value=1.5e-07 Score=111.75 Aligned_cols=150 Identities=23% Similarity=0.340 Sum_probs=90.6
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM- 618 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~- 618 (1036)
..|.+++|.....+++.+.+..+. .....+||+|++|||||++|++++... +.||+.++|+.+.+.
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 357789999988888877665532 224469999999999999999999875 579999999876331
Q ss_pred ----hccCchh-------HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------
Q psy5440 619 ----FVGVGPS-------RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------- 679 (1036)
Q Consensus 619 ----~vG~~~~-------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------- 679 (1036)
..|.... .....|+.| ....|||||||.+.. .....|+..++.-
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPL--------------DVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCH--------------HHHHHHHHHHhcCcEEeCCCC
Confidence 1121100 001123322 245899999999842 1223444433321
Q ss_pred -cCCCCeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhhHH
Q psy5440 680 -NTTTNVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKGRA 722 (1036)
Q Consensus 680 -~~~~~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~eeR~ 722 (1036)
....++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~ 315 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERR 315 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccch
Confidence 0123578999998642 23344444 442 2444445544444
No 243
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.58 E-value=2.8e-07 Score=108.59 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=111.8
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh-
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF- 619 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~- 619 (1036)
.|.+++|.+...+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 56789999988888777665432 223569999999999999999998765 4699999998764321
Q ss_pred ----ccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC---------
Q psy5440 620 ----VGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF--------- 679 (1036)
Q Consensus 620 ----vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~--------- 679 (1036)
.|... ......|+.| ...+|||||||.+.. .....|+..++.-
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPL--------------NLQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCH--------------HHHHHHHHHHhhCeEEeCCCCc
Confidence 11100 0011122223 346899999999842 2223333333211
Q ss_pred cCCCCeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhhHHH----HHHHhcCCCCCCCChhhHHHHHhhc
Q psy5440 680 NTTTNVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKGRAS----IFKVHLKPLKTDLDRDDLSRKLAAL 748 (1036)
Q Consensus 680 ~~~~~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~eeR~~----IL~~~L~~l~~~l~~~~l~~~LA~~ 748 (1036)
..+.++.+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++..+. ......
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~---------~~~~~~ 337 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFA---------RELKRK 337 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHH---------HHhCCC
Confidence 0123688999998653 22333332 331 24455566666654 2222222110 001111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 749 TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 749 T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
..+++ ..++.++.+..++-+..+++.++++.+.
T Consensus 338 ~~~~~---------~~a~~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 338 TKGFT---------DDALRALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred CCCCC---------HHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 12333 3344555566777777777777776553
No 244
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.56 E-value=9.3e-07 Score=104.72 Aligned_cols=94 Identities=24% Similarity=0.368 Sum_probs=63.6
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh---
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~--- 618 (1036)
+.+++|...+..++.+.+..+. ..+..+++.|++||||+++|++++... +.||+.++|..+.+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4568999888888776665542 224469999999999999999998764 579999999876332
Q ss_pred --hccCchh----H---HHHHHHHhhcCCCeEEEEcCchhhh
Q psy5440 619 --FVGVGPS----R---VRDMFSMARKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 619 --~vG~~~~----~---vr~lF~~Ar~~aP~ILfIDEIDaL~ 651 (1036)
..|.... . ....|+ ....+.|||||||.+.
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~ 241 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP 241 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC
Confidence 1121100 0 011122 2235789999999984
No 245
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=7.7e-07 Score=101.69 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--eEEEec--------------hhhhhhhc-----cCchhHHHHHHHHh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVP--FITVSG--------------SEFLEMFV-----GVGPSRVRDMFSMA 634 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp--fi~Is~--------------se~~e~~v-----G~~~~~vr~lF~~A 634 (1036)
.+.|..+||+||+|+||+++|+++|..+-+. --...| .|+..... .-+-..+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4678899999999999999999999976431 000011 11111000 12334677766654
Q ss_pred hc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceE
Q psy5440 635 RK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQ 710 (1036)
Q Consensus 635 r~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~ 710 (1036)
.. ..--|++||++|.+. ...-|.||..|+ +++.++++|..|+.++.|-|.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 32 234699999999984 256788998888 477889999999999999999999 775 5
Q ss_pred EEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 711 IFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 711 I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
+.+++|+.++..+.|.... . ++.+. +..+++.+.|-
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~--~~~~~-a~~~~~la~G~ 197 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---T--MSQDA-LLAALRLSAGA 197 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---C--CCHHH-HHHHHHHcCCC
Confidence 8999999888887775432 1 33332 34456666664
No 246
>KOG0740|consensus
Probab=98.53 E-value=5.9e-08 Score=112.33 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
....|.|+|++|++.||+.|+|+|.| +..|+.|+.+-. ++||+||.|| ||||||+|||.|++.-
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcce
Confidence 45679999999999999999999999 788999986655 6699999999 9999999999999944
No 247
>KOG0990|consensus
Probab=98.49 E-value=1.3e-06 Score=96.90 Aligned_cols=188 Identities=20% Similarity=0.199 Sum_probs=120.1
Q ss_pred cCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+....-.+.||++.++....+.++++.-+ .| +.|+|||||||||....+.|..+-.|.-+- +-+++
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~--~m~le 98 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPTT--SMLLE 98 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCch--hHHHH
Confidence 34556779999999998888877744422 23 789999999999999999999887751111 11111
Q ss_pred hh--ccCchhH---HHHHHHHhhc-------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCe
Q psy5440 618 MF--VGVGPSR---VRDMFSMARK-------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV 685 (1036)
Q Consensus 618 ~~--vG~~~~~---vr~lF~~Ar~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~V 685 (1036)
+- ...+..- -...|..++. ..+-.|++||.|++.. ...|+|-..+..+.. ++
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~--n~ 162 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTA--NT 162 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhcc--ce
Confidence 11 1111111 1245665553 2678999999999853 234555555655444 55
Q ss_pred EEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHH
Q psy5440 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNE 763 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvne 763 (1036)
.++..+|.+..+.|+++. ||.+ +.+.+.+...-..++.+++.......+.+... .+++.. -.|++..+|.
T Consensus 163 rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~-a~~r~s----~gDmr~a~n~ 232 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYS-ALGRLS----VGDMRVALNY 232 (360)
T ss_pred EEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHH-HHHHHh----HHHHHHHHHH
Confidence 666778999999999998 7755 56666677777778888876544334443332 234333 3466665554
No 248
>PRK08181 transposase; Validated
Probab=98.49 E-value=8.7e-07 Score=98.30 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=65.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC-chhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV-GPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
..+++|+||||||||+||.|++.++ |..+++++..++++.+... ........+.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 4579999999999999999999755 7788999999888754211 1122334444433 356999999987632
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
.......+-+++..... . . -+|.|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 22333455555554321 2 2 466777754
No 249
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.47 E-value=1.8e-07 Score=111.44 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.++|+||+|++++|+.|++....+ +..+...|.+.||||||||| |||++|||+|++++..
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36789999999999999999876542 45667789999999999999 9999999999999854
No 250
>KOG1051|consensus
Probab=98.44 E-value=1.2e-06 Score=109.30 Aligned_cols=129 Identities=26% Similarity=0.326 Sum_probs=91.6
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-----
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM----- 618 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~----- 618 (1036)
.|+|+++|...+.+.|..-+..-. +. +++-.+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 589999999999988877432111 00 345568999999999999999999977 357999999987651
Q ss_pred ----hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC---------CCCe
Q psy5440 619 ----FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT---------TTNV 685 (1036)
Q Consensus 619 ----~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~---------~~~V 685 (1036)
|+|.. ....+.+..++..-|||+|||||.-. ...+|.|+..+|...- -.++
T Consensus 639 sp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkAh--------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 639 SPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKAH--------------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCcccccch--hHHHHHHHHhcCCceEEEEechhhcC--------------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 34433 23455556666656999999999752 2456666666664322 2379
Q ss_pred EEEEecCCCc
Q psy5440 686 VVLAATNRVD 695 (1036)
Q Consensus 686 iVIaaTN~pd 695 (1036)
|||+|+|.-.
T Consensus 703 I~IMTsn~~~ 712 (898)
T KOG1051|consen 703 IFIMTSNVGS 712 (898)
T ss_pred EEEEecccch
Confidence 9999999643
No 251
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.7e-06 Score=96.52 Aligned_cols=133 Identities=19% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE-EEec--------------hhhhhhhc---c--CchhHHHHHHHHhh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI-TVSG--------------SEFLEMFV---G--VGPSRVRDMFSMAR 635 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi-~Is~--------------se~~e~~v---G--~~~~~vr~lF~~Ar 635 (1036)
.+.|..+||+||.|+||+++|+++|..+-+.-. ...| .|+..... | -+-..+|++-+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 467889999999999999999999996643110 0001 11111011 1 12345676655443
Q ss_pred c----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEE
Q psy5440 636 K----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQI 711 (1036)
Q Consensus 636 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I 711 (1036)
. ..--|++||++|.+. ...-|.||..++ +++.++++|..|+.++.|-|.+++ |+ ..+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred hCcccCCceEEEecchhhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 2 223699999999983 256788888888 467789999999999999999999 77 468
Q ss_pred EecCCChhhHHHHHHH
Q psy5440 712 FVPAPDIKGRASIFKV 727 (1036)
Q Consensus 712 ~i~~Pd~eeR~~IL~~ 727 (1036)
.+++|+.++..+.|..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888887764
No 252
>PRK15115 response regulator GlrR; Provisional
Probab=98.41 E-value=7.7e-07 Score=104.95 Aligned_cols=146 Identities=24% Similarity=0.388 Sum_probs=84.7
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh----
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF---- 619 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~---- 619 (1036)
.++|.......+.+.+..+. .....++|+|++|||||++|++++... +.||+.++|..+.+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 56777766555555444431 223469999999999999999998865 5799999998764321
Q ss_pred -ccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----c----CC
Q psy5440 620 -VGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----N----TT 682 (1036)
Q Consensus 620 -vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----~----~~ 682 (1036)
.|... .....+|+.+ ...+|||||||.+.. .....|+..++.- . ..
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~ 267 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDID 267 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceee
Confidence 11100 0001122222 245899999999842 1223333333311 1 12
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRA 722 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~ 722 (1036)
.++.+|++|+.+ ++.. +..|+|.. .+.+..|...+|.
T Consensus 268 ~~~rii~~~~~~--l~~~-~~~~~f~~~l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 268 IDVRIISATHRD--LPKA-MARGEFREDLYYRLNVVSLKIPALAERT 311 (444)
T ss_pred eeEEEEEeCCCC--HHHH-HHcCCccHHHHHhhceeeecCCChHhcc
Confidence 368999999864 3333 33456632 2344556565554
No 253
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.40 E-value=2.6e-06 Score=103.62 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=126.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhhhhccCchhHHHHHHHHhh---------cCCCeEEEEcCch
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLEMFVGVGPSRVRDMFSMAR---------KHAPCILFIDEID 648 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar---------~~aP~ILfIDEID 648 (1036)
.||||.|++||+|++++++++.-+. .||..+..+-=.+..+|.. .+...+..-+ .....||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 5899999999999999999999874 5887765443334444432 1111111111 1123599999997
Q ss_pred hhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----------cCCCCeEEEEecCCC---ccccHHhhCCCCcceEEEec
Q psy5440 649 AVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----------NTTTNVVVLAATNRV---DVLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 649 aL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----------~~~~~ViVIaaTN~p---d~LDpALlRpGRFdr~I~i~ 714 (1036)
.+- ..+++.|++.|+.- .-+.+++|||+-|.. ..|.++|+. ||+.+|.++
T Consensus 104 ~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 104 RLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 763 36888888888631 223568889874432 358999999 999999999
Q ss_pred CCChhhH-------HHHHHHh--cCCCCCCCChhhHHHHHhhc--CCCC-CHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q psy5440 715 APDIKGR-------ASIFKVH--LKPLKTDLDRDDLSRKLAAL--TPGF-TGADIANVCNEAALIAARDLHTTIVMKHFE 782 (1036)
Q Consensus 715 ~Pd~eeR-------~~IL~~~--L~~l~~~l~~~~l~~~LA~~--T~G~-SgaDL~~LvneAal~A~r~~~~~It~~d~~ 782 (1036)
.|+..+. ..|.... +.+ ..++.. +++.++.. .-|. |.+--..+++-|..+|+.+++..|+.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~--v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPA--VGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHcc--CCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8775432 2233222 222 223322 22333221 2354 667777788888889999999999999999
Q ss_pred HHHHHHHcC
Q psy5440 783 QAIERVVAG 791 (1036)
Q Consensus 783 ~Aiervi~g 791 (1036)
+|+.-++..
T Consensus 245 ~Aa~lvL~h 253 (584)
T PRK13406 245 LAARLVLAP 253 (584)
T ss_pred HHHHHHHHh
Confidence 999998653
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.39 E-value=1.1e-06 Score=99.12 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC-chhHHHHHHHHhhcCCCeEEEEcCchhhhhc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV-GPSRVRDMFSMARKHAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~ 653 (1036)
..+|++|+||+|||||+||.|+|+++ |.++..++.++|+...... ....+.+.++..+. ..+|+||||.+-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCcc--
Confidence 35799999999999999999999987 7888888888876643211 11123344444433 4699999996542
Q ss_pred CCCCCCCCChhH-HHHHHHHHHH-hhcCcCCCCeEEEEecCCC
Q psy5440 654 RGGRNFGGHSEQ-ENTLNQLLVE-MDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 654 r~~~~~~~~~e~-~~~LnqLL~e-mDg~~~~~~ViVIaaTN~p 694 (1036)
..++. ..++..++.. |. ....+|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 12222 2455555432 22 345678888854
No 255
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.39 E-value=2.5e-06 Score=95.46 Aligned_cols=209 Identities=24% Similarity=0.356 Sum_probs=130.5
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
+....|+.+++.+...+.+.+-...+ ..+ ...+||.|.+||||-++||+..... ..||+.+||+.+-
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~------Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKL------AML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHh------hcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34567999999988777776544332 222 2348999999999999999997754 6799999998765
Q ss_pred hh-----hccCch--hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-c-------C
Q psy5440 617 EM-----FVGVGP--SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-N-------T 681 (1036)
Q Consensus 617 e~-----~vG~~~--~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-~-------~ 681 (1036)
+. ..|..+ .--..+|++|... .+|+|||-.+.+ ....-+-.+|. ||. . -
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-----------~lQaKLLRFL~--DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-----------RLQAKLLRFLN--DGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-----------HHHHHHHHHhc--CCceeecCCcceE
Confidence 42 223222 3445788888766 699999977632 12222333332 221 1 1
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCC-ChhhHHH--------HHhhcCCCC
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDL-DRDDLSR--------KLAALTPGF 752 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l-~~~~l~~--------~LA~~T~G~ 752 (1036)
.-+|.||+||..+- ..+...|+|...++. |...|..++++++... |...+++ .+..--+.+
T Consensus 332 ~vdVRVIcatq~nL---~~lv~~g~fReDLfy-------RLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl 401 (511)
T COG3283 332 HVDVRVICATQVNL---VELVQKGKFREDLFY-------RLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKL 401 (511)
T ss_pred EEEEEEEecccccH---HHHHhcCchHHHHHH-------HhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCcc
Confidence 12689999998764 456666777554444 7777777777766322 2222222 122222333
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCcc
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGME 793 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle 793 (1036)
+.. ......++.|+-++..++.++.+...-.+
T Consensus 402 ~~~---------~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 402 AAD---------LLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred CHH---------HHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 311 23445678899999999999988655433
No 256
>PRK06526 transposase; Provisional
Probab=98.36 E-value=7.3e-07 Score=98.18 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=64.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC-chhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV-GPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
+.+++|+||||||||+||.+|+.++ |..+..+++.++++..... ....+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 5689999999999999999998875 6777788888877654211 111222333332 3457999999987631
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
.......+.+++.... .+. .+|.+||.+-
T Consensus 174 -------~~~~~~~L~~li~~r~---~~~--s~IitSn~~~ 202 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRY---ERA--SLIVTSNKPF 202 (254)
T ss_pred -------CHHHHHHHHHHHHHHH---hcC--CEEEEcCCCH
Confidence 2333445666665432 122 3677788653
No 257
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=1.9e-06 Score=91.17 Aligned_cols=163 Identities=23% Similarity=0.307 Sum_probs=85.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC---CeEEEec-h--------hh-------------h-hhhc------------
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV---PFITVSG-S--------EF-------------L-EMFV------------ 620 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv---pfi~Is~-s--------e~-------------~-e~~v------------ 620 (1036)
...++|+||.|+|||+|++.+.....- ..+++++ . .+ . ....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456899999999999999999998732 2222221 1 11 0 0000
Q ss_pred cCchhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc-
Q psy5440 621 GVGPSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD- 698 (1036)
Q Consensus 621 G~~~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD- 698 (1036)
......+..+++...... ..||+|||+|.+. .. .......+..|...++......++.+|.++.......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IA-------SEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BC-------TTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hc-------ccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 112344566666665543 4899999999996 11 1122344555555555434455554444433222111
Q ss_pred -----HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCC-ChhhHHHHHhhcCCCCC
Q psy5440 699 -----KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDL-DRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 699 -----pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l-~~~~l~~~LA~~T~G~S 753 (1036)
..+. +|+.. +.+++.+.++..++++..+... ..+ ..+..++.+...|.|..
T Consensus 172 ~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 172 FLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp TT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred hhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 1122 37777 9999999999999999987655 333 23444567777887753
No 258
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.35 E-value=2.9e-06 Score=94.41 Aligned_cols=163 Identities=22% Similarity=0.352 Sum_probs=86.2
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-C--eEEEechhhhhhh
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-P--FITVSGSEFLEMF 619 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-p--fi~Is~se~~e~~ 619 (1036)
+.|.+++=.-.--.+...+++.+- ...+.+||+||+|||||++++.+-.+..- . ...++++....
T Consensus 7 ~~~~~~~VpT~dt~r~~~ll~~l~----------~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt-- 74 (272)
T PF12775_consen 7 MPFNEILVPTVDTVRYSYLLDLLL----------SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT-- 74 (272)
T ss_dssp ------T---HHHHHHHHHHHHHH----------HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--
T ss_pred cccceEEeCcHHHHHHHHHHHHHH----------HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--
Confidence 455555544333334445555531 12357999999999999999988776532 2 23444443221
Q ss_pred ccCchhHHHHHHHHh-----------hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-------
Q psy5440 620 VGVGPSRVRDMFSMA-----------RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT------- 681 (1036)
Q Consensus 620 vG~~~~~vr~lF~~A-----------r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~------- 681 (1036)
+..+..+.+.. ..+..+|+||||+..-.... .+ .....+.|.|+++. .|+..
T Consensus 75 ----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~----yg-tq~~iElLRQ~i~~-~g~yd~~~~~~~ 144 (272)
T PF12775_consen 75 ----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDK----YG-TQPPIELLRQLIDY-GGFYDRKKLEWK 144 (272)
T ss_dssp ----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---T----TS---HHHHHHHHHHHC-SEEECTTTTEEE
T ss_pred ----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCC----CC-CcCHHHHHHHHHHh-cCcccCCCcEEE
Confidence 12222222111 11234899999998653321 11 12233455555543 23322
Q ss_pred -CCCeEEEEecCCCc---cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 682 -TTNVVVLAATNRVD---VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 682 -~~~ViVIaaTN~pd---~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
-.++.+|||+|.+. .|++.|+| .| ..+.++.|+.+....|+...+.
T Consensus 145 ~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 145 SIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred EEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 13688899988543 58899998 66 5789999999999999887765
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=3.9e-06 Score=95.63 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=91.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCC-------------------------eEEEechhhhhhhcc-----Cchh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------------------FITVSGSEFLEMFVG-----VGPS 625 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------------------fi~Is~se~~e~~vG-----~~~~ 625 (1036)
.+.|..+||+||+|+|||++|+++|+.+.+. |+.++...-. .-.| -+-.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 3788899999999999999999999976431 2222211000 0001 1345
Q ss_pred HHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHh
Q psy5440 626 RVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701 (1036)
Q Consensus 626 ~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpAL 701 (1036)
.+|++.+.+.. ...-|++||++|.+.. ...|.|+..++.. ..++.+|.+|+.++.+.+.+
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEP--PPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhC--cCCCEEEEEeCChHhChHHH
Confidence 67887776653 2236999999998832 3456666666643 24577777999999999999
Q ss_pred hCCCCcceEEEecCCChhhHHHHHHH
Q psy5440 702 LRPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 702 lRpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
++ |+ ..+.|++|+.++..+.|..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 66 5688999999888877754
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=2e-06 Score=98.05 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=49.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC---chhHHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV---GPSRVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~---~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
.+++|+||+|||||+||.|+|+++ +..+++++..+++..+... ........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999987 7789999999987754211 1111122233333 3369999999765
No 261
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.32 E-value=4.2e-06 Score=98.39 Aligned_cols=146 Identities=23% Similarity=0.365 Sum_probs=86.8
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh----
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF---- 619 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~---- 619 (1036)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|+.+.+..
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46777777666655554432 224569999999999999999998654 5799999998764321
Q ss_pred -ccCchhH-------HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------CC
Q psy5440 620 -VGVGPSR-------VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---------TT 682 (1036)
Q Consensus 620 -vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---------~~ 682 (1036)
.|..... ...+|. ...+++|||||||.+.. .....|+..++.-. ..
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISP--------------MMQVRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCH--------------HHHHHHHHHHccCcEEeCCCCceee
Confidence 1111000 001122 22357999999999842 12234444443211 12
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGRA 722 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR~ 722 (1036)
.++.+|++|+.+- ..+..+|+|.. .+.+..|...+|.
T Consensus 273 ~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 273 VDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcc
Confidence 2578898887643 34455667753 3455555555443
No 262
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.31 E-value=9.5e-07 Score=105.52 Aligned_cols=203 Identities=23% Similarity=0.347 Sum_probs=121.2
Q ss_pred ccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc--CCCeEEEechhhhh-----hhcc
Q psy5440 549 AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA--NVPFITVSGSEFLE-----MFVG 621 (1036)
Q Consensus 549 ~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea--gvpfi~Is~se~~e-----~~vG 621 (1036)
++.+...+.+...+..+... .-.+||.|.|||||-.|||++.... ..||+.+||..+-+ +++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45665556665555544322 2358999999999999999998755 56999999986554 2333
Q ss_pred Cchh--------HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHH-----hhcCcCCCCeEEE
Q psy5440 622 VGPS--------RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVE-----MDGFNTTTNVVVL 688 (1036)
Q Consensus 622 ~~~~--------~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~e-----mDg~~~~~~ViVI 688 (1036)
..+. -.+..+++|-. ..+|+|||..+- -.....|-+.|.+ +.+-...-+|.||
T Consensus 386 y~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~p-----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi 451 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDMP-----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVI 451 (606)
T ss_pred cCccccccchhccccccceecCC---CccHHHHhhhch-----------HHHHHHHHHHHhhCceeccCCcceeEEEEEE
Confidence 3222 22333444433 479999998762 1112223333332 2232323368999
Q ss_pred EecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 689 AATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 689 aaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
+||+++- ..|.+-|||-+.+|+ |+.-+..-++++...-+...++..+-..... .+.+| ..+++..
T Consensus 452 ~ath~dl---~~lv~~g~fredLyy-------rL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l----~~~~~~~ 516 (606)
T COG3284 452 AATHRDL---AQLVEQGRFREDLYY-------RLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQL----DDDALAR 516 (606)
T ss_pred eccCcCH---HHHHHcCCchHHHHH-------HhcCeeeccCchhcccccHHHHHHHHHHccC-CCccC----CHHHHHH
Confidence 9999876 789999999877666 5555555566555443333333322222222 11221 2334555
Q ss_pred HHhcCCcccHHHHHHHHHHHHc
Q psy5440 769 ARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi~ 790 (1036)
+...+++-+..+++.++++...
T Consensus 517 l~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 517 LLAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred HHhCCCCCcHHHHHHHHHHHHH
Confidence 6667788888888887777543
No 263
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=3.4e-06 Score=82.96 Aligned_cols=120 Identities=24% Similarity=0.262 Sum_probs=70.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGR 657 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~ 657 (1036)
+.++|+||.|+|||++++.++.... -.++++++.+......... . +.+.+.+.....+.+||||||+.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 7788888877654211110 0 2233333222356899999999872
Q ss_pred CCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH--HhhCCCCcceEEEecCCChhh
Q psy5440 658 NFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK--ALLRPGRFDRQIFVPAPDIKG 720 (1036)
Q Consensus 658 ~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp--ALlRpGRFdr~I~i~~Pd~ee 720 (1036)
.....+..+... ..++-||.|+.....+.. +-.-+||.. .+.+.+.+..|
T Consensus 75 ------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 233455555542 123344444333222211 111245764 57777777654
No 264
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.29 E-value=1.6e-05 Score=95.75 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=115.3
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE-echhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV-SGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I-s~se~~e 617 (1036)
.....+.+||+-...-.++++.++..... +....+-+||+||||||||++++++|++++..+..- +...+.+
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 34567899999998777777777765211 222334678999999999999999999998766643 2222111
Q ss_pred ------hhccCc------hhHH---HHH-HHHhhc-----------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHH
Q psy5440 618 ------MFVGVG------PSRV---RDM-FSMARK-----------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLN 670 (1036)
Q Consensus 618 ------~~vG~~------~~~v---r~l-F~~Ar~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Ln 670 (1036)
.|.+.. ..++ .++ +..++. ..+.||+|||+-.+... ........|.
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~~f~~~L~ 157 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTSRFREALR 157 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHHHHHHHHH
Confidence 111110 1111 111 111121 24679999999765321 1122223333
Q ss_pred HHHHHhhcCcCCC-CeEEEEe-c------CCC--------ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC--
Q psy5440 671 QLLVEMDGFNTTT-NVVVLAA-T------NRV--------DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL-- 732 (1036)
Q Consensus 671 qLL~emDg~~~~~-~ViVIaa-T------N~p--------d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l-- 732 (1036)
+++.. ... ++|+|.+ | |.. ..+++.++...++ .+|.|.+-...-..+.|+..+...
T Consensus 158 ~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 158 QYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 33321 223 6777766 1 111 1467777765455 458887766655555555444322
Q ss_pred ---C-CCC-ChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 733 ---K-TDL-DRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 733 ---~-~~l-~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
. ... +...+++.|+..+. +||+..++.--..+.
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1 111 22344567776654 599999987655555
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=98.23 E-value=2.6e-06 Score=94.16 Aligned_cols=101 Identities=25% Similarity=0.305 Sum_probs=63.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhcc-CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVG-VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
..+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...|... ...+.+|+|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC--
Confidence 4579999999999999999997764 778888888887754321 1112244455443 24567999999976521
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
+.+....+-+++.... ... -+|.|||.+
T Consensus 179 -------~~~~~~~lf~li~~r~---~~~--s~iiTsn~~ 206 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRY---EKG--SMILTSNLP 206 (259)
T ss_pred -------ChHHHHHHHHHHHHHH---hcC--cEEEecCCC
Confidence 2222334555554432 122 256678764
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.22 E-value=6.5e-06 Score=90.76 Aligned_cols=71 Identities=25% Similarity=0.411 Sum_probs=49.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccCch-hHHHH-HHHHhhcCCCeEEEEcCchhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGVGP-SRVRD-MFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~~~-~~vr~-lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
.+.+++|+||||||||+||-||++++ |.+++.++.++++......-. ..... +.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 36789999999999999999999977 789999999998864321111 11111 11112 23469999999665
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.20 E-value=1.7e-06 Score=90.45 Aligned_cols=70 Identities=27% Similarity=0.456 Sum_probs=48.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC-chhHHHHHHHHhhcCCCeEEEEcCchh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV-GPSRVRDMFSMARKHAPCILFIDEIDA 649 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDa 649 (1036)
...|++|+||||||||+||.|++.++ +.++..++.+++++..... ......+.+..... ..+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 35789999999999999999999866 8899999999988764322 11223344444443 35899999854
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.19 E-value=8.7e-06 Score=99.63 Aligned_cols=155 Identities=27% Similarity=0.299 Sum_probs=91.7
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhc--CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE-EechhhhhhhccCch
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLG--AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT-VSGSEFLEMFVGVGP 624 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG--~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~-Is~se~~e~~vG~~~ 624 (1036)
|.|++++|+.|. +..+.-..+...-| .+-.-+|||+|.||||||.|.+.+++-+-.-++. ..++. -+|.++
T Consensus 288 IyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GLTA 361 (682)
T COG1241 288 IYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGLTA 361 (682)
T ss_pred ccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCcee
Confidence 789999888774 22222222211111 2334579999999999999999999987554432 22221 233344
Q ss_pred hHHHHHH--H---Hhh---cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----------cCCCCe
Q psy5440 625 SRVRDMF--S---MAR---KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----------NTTTNV 685 (1036)
Q Consensus 625 ~~vr~lF--~---~Ar---~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----------~~~~~V 685 (1036)
..+++-+ + +|- -..+.|..|||+|.+-. ..-+.+...|+.- .-+...
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~--------------~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE--------------EDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh--------------HHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 4344333 1 111 12357999999998731 2234445555421 113456
Q ss_pred EEEEecCCCc-------------cccHHhhCCCCcceEEEe-cCCChhhHHHH
Q psy5440 686 VVLAATNRVD-------------VLDKALLRPGRFDRQIFV-PAPDIKGRASI 724 (1036)
Q Consensus 686 iVIaaTN~pd-------------~LDpALlRpGRFdr~I~i-~~Pd~eeR~~I 724 (1036)
-|+||+|... .|+++|++ |||..+.+ +.||.+.-..|
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHH
Confidence 7889999644 58899999 99987765 46666433333
No 269
>PRK06921 hypothetical protein; Provisional
Probab=98.19 E-value=4.8e-06 Score=92.36 Aligned_cols=68 Identities=26% Similarity=0.298 Sum_probs=47.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDA 649 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDa 649 (1036)
..+++|+||||||||+||.|||+++ +..+++++..+++...... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 5689999999999999999999976 6778888887766543211 01122222222 2346999999954
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=5.8e-06 Score=80.40 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=58.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc--------CCCeEEEechhhhh----------hh--c--c-CchhHHHHHH-HHh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA--------NVPFITVSGSEFLE----------MF--V--G-VGPSRVRDMF-SMA 634 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea--------gvpfi~Is~se~~e----------~~--v--G-~~~~~vr~lF-~~A 634 (1036)
.+.++++||||+|||++++.++... ..+++.+++..... .+ . . .....+.+.+ +..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 78888888765431 11 1 1 1223333333 333
Q ss_pred hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 635 RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 635 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
......+|+|||+|.+. ....++.|...++ ...-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444699999999983 1356666665555 222234444443
No 271
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.17 E-value=1.5e-06 Score=99.33 Aligned_cols=188 Identities=25% Similarity=0.268 Sum_probs=105.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHH-----------HHHHHhhcCCCeEEEEcCc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVR-----------DMFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr-----------~lF~~Ar~~aP~ILfIDEI 647 (1036)
.-++||+|.||||||.|.+.++.-+... +++++..-.. .|.++...+ ..+-.|. ..|++|||+
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~--~gLta~~~~d~~~~~~~leaGalvlad---~GiccIDe~ 130 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA--AGLTASVSRDPVTGEWVLEAGALVLAD---GGICCIDEF 130 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC--CCCCEEECCCGGTSSECEEE-HHHHCT---TSEEEECTT
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc--CCccceeccccccceeEEeCCchhccc---Cceeeeccc
Confidence 4579999999999999999887655333 3444332110 111111000 1233333 359999999
Q ss_pred hhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----------cCCCCeEEEEecCCCc-------------cccHHhhC
Q psy5440 648 DAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----------NTTTNVVVLAATNRVD-------------VLDKALLR 703 (1036)
Q Consensus 648 DaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----------~~~~~ViVIaaTN~pd-------------~LDpALlR 703 (1036)
|.+-. .....|++.|+.- .-+.+.-|+||+|... .+++.|++
T Consensus 131 dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 131 DKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp TT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred ccccc--------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 98831 2356677777642 1134678999999654 47889999
Q ss_pred CCCcceEEEe-cCCChhhHHHHHHHhcCCCCC--------------CCChhhHHHHHh--h-------------------
Q psy5440 704 PGRFDRQIFV-PAPDIKGRASIFKVHLKPLKT--------------DLDRDDLSRKLA--A------------------- 747 (1036)
Q Consensus 704 pGRFdr~I~i-~~Pd~eeR~~IL~~~L~~l~~--------------~l~~~~l~~~LA--~------------------- 747 (1036)
|||..+.+ +.|+.+.-..|.++.+..... .++.+.+.+.++ +
T Consensus 197 --RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Y 274 (331)
T PF00493_consen 197 --RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYY 274 (331)
T ss_dssp --C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHH
T ss_pred --hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 99998765 677766555555544442210 112111111110 0
Q ss_pred -----------cCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy5440 748 -----------LTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 748 -----------~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aierv 788 (1036)
.....+.+.|+.+++-|-.+|..+.+..|+.+|+..|++-+
T Consensus 275 v~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 275 VELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 11235677888999988888888899999999999998754
No 272
>KOG2035|consensus
Probab=98.17 E-value=2.2e-05 Score=85.74 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=119.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh---
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF--- 615 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~--- 615 (1036)
.-+|+.+.+.++....|..+... .. . -++|+|||+|+||-|.+.++-+++ |++=..+....|
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~----~d-------~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST----GD-------F-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc----CC-------C-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 34577788888887777655531 11 1 258999999999999999999877 222111111111
Q ss_pred ---------------hhh---hccCch-hHHHHHHHHhhcCCC---------eEEEEcCchhhhhcCCCCCCCCChhHHH
Q psy5440 616 ---------------LEM---FVGVGP-SRVRDMFSMARKHAP---------CILFIDEIDAVGRKRGGRNFGGHSEQEN 667 (1036)
Q Consensus 616 ---------------~e~---~vG~~~-~~vr~lF~~Ar~~aP---------~ILfIDEIDaL~~~r~~~~~~~~~e~~~ 667 (1036)
++. -+|.-. --+.++..+..+..| -+|+|.|.|.|.+ +
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~--------------d 142 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR--------------D 142 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------------H
Confidence 111 022222 234566665544333 5899999999953 2
Q ss_pred HHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhh
Q psy5440 668 TLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAA 747 (1036)
Q Consensus 668 ~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~ 747 (1036)
....|-..|+.+. .++.+|..+|....+-+++++ |. ..|.++.|+.++...++...+.+....+. ..++..+|+
T Consensus 143 AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~ 216 (351)
T KOG2035|consen 143 AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHH
Confidence 2344445555443 467788889999999999998 65 45899999999999999999987665555 556677888
Q ss_pred cCCC
Q psy5440 748 LTPG 751 (1036)
Q Consensus 748 ~T~G 751 (1036)
.+.|
T Consensus 217 kS~~ 220 (351)
T KOG2035|consen 217 KSNR 220 (351)
T ss_pred Hhcc
Confidence 7765
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=4.8e-05 Score=82.75 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=116.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC---CCeEEEec-----hhhhhhhccC------------chhHHHHHHHHhhc-CCCe
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEAN---VPFITVSG-----SEFLEMFVGV------------GPSRVRDMFSMARK-HAPC 640 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~-----se~~e~~vG~------------~~~~vr~lF~~Ar~-~aP~ 640 (1036)
+.++|+-|+|||.++||+....+ +-.++++. +.+.+.++.+ ....-+.+.+..++ ..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 67999999999999998776553 22334432 2222221111 11222334444443 4568
Q ss_pred EEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCC------CCcceEEEec
Q psy5440 641 ILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRP------GRFDRQIFVP 714 (1036)
Q Consensus 641 ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRp------GRFdr~I~i~ 714 (1036)
++++||.+.+.. .....+.-|...-+.....-.|+.|+=.. |.+.+++| -|++..|.++
T Consensus 134 ~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecC
Confidence 999999998842 12233333333323333334566666432 33322222 1788778889
Q ss_pred CCChhhHHHHHHHhcCCC--CCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Q psy5440 715 APDIKGRASIFKVHLKPL--KTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFE 782 (1036)
Q Consensus 715 ~Pd~eeR~~IL~~~L~~l--~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~ 782 (1036)
+.+.++-...++.++..- ..++-.+..+..++..+.| .++-|.++|..|...|...+...|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999998889999998743 2445556666778888888 568899999999888888888888876654
No 274
>KOG0478|consensus
Probab=98.10 E-value=4.4e-05 Score=91.58 Aligned_cols=125 Identities=26% Similarity=0.343 Sum_probs=70.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchh-----HHHHHHHHhh---cCCCeEEEEcCchhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS-----RVRDMFSMAR---KHAPCILFIDEIDAV 650 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~-----~vr~lF~~Ar---~~aP~ILfIDEIDaL 650 (1036)
.-+|||+|.||||||.+.+.+++-+..-.+ .|+-. +.-+|.++. .-+++.-+.- .....|-.|||+|.+
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 347999999999999999999997754332 22210 001111111 1111211111 112357789999998
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHH------hhcC--cCCCCeEEEEecCCCc-------------cccHHhhCCCCcce
Q psy5440 651 GRKRGGRNFGGHSEQENTLNQLLVE------MDGF--NTTTNVVVLAATNRVD-------------VLDKALLRPGRFDR 709 (1036)
Q Consensus 651 ~~~r~~~~~~~~~e~~~~LnqLL~e------mDg~--~~~~~ViVIaaTN~pd-------------~LDpALlRpGRFdr 709 (1036)
.. ....+|.+.++. ..|+ .-+...-|||++|... .|+|.|++ |||.
T Consensus 539 ~d-----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDL 605 (804)
T KOG0478|consen 539 SD-----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDL 605 (804)
T ss_pred hH-----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcE
Confidence 32 122233332221 1121 2244667999999432 58999999 9998
Q ss_pred EEE-ecCCChh
Q psy5440 710 QIF-VPAPDIK 719 (1036)
Q Consensus 710 ~I~-i~~Pd~e 719 (1036)
++- ++.||..
T Consensus 606 IylllD~~DE~ 616 (804)
T KOG0478|consen 606 IFLLLDKPDER 616 (804)
T ss_pred EEEEecCcchh
Confidence 654 4777775
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=1.6e-05 Score=79.00 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=63.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh----------------------ccCc-h-hHHHHHHHHh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF----------------------VGVG-P-SRVRDMFSMA 634 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~----------------------vG~~-~-~~vr~lF~~A 634 (1036)
++|+||||+|||+++.+++..+ +.+++.+++....... .... . ...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5677777664332100 0000 1 1112234555
Q ss_pred hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 635 RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 635 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
....|.+|+|||+..+.........+......+.+..|+..+ ...++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCC
Confidence 667789999999999865321100011122234444444443 234666666665543
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=6.1e-05 Score=99.24 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=103.5
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe---EEEech---hh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF---ITVSGS---EF 615 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf---i~Is~s---e~ 615 (1036)
...+++++|.++..++|..++.. .....+-+-|+||+|+||||||+++++....+| +.++.. ..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 34689999999888888766642 122345688999999999999999988764432 111110 00
Q ss_pred hhhhcc----C-------chhHHH-------------HHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHH
Q psy5440 616 LEMFVG----V-------GPSRVR-------------DMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQ 671 (1036)
Q Consensus 616 ~e~~vG----~-------~~~~vr-------------~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Lnq 671 (1036)
.+.+.. . ....+. ......-...+.+|+||++|.. ..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l~~ 313 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVLDA 313 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHHHH
Confidence 000000 0 000001 1111222345689999998643 22334
Q ss_pred HHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-CCCChhhHHHHHhhcCC
Q psy5440 672 LLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-TDLDRDDLSRKLAALTP 750 (1036)
Q Consensus 672 LL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-~~l~~~~l~~~LA~~T~ 750 (1036)
+....+.+ ..+-.||.||.+. .+++....++.+.++.|+.++..++|..++-... ...+...+...+++.+.
T Consensus 314 L~~~~~~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 314 LAGQTQWF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred HHhhCccC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 43333322 2344556666643 3444335778899999999999999988864322 11123455667778887
Q ss_pred CCC
Q psy5440 751 GFT 753 (1036)
Q Consensus 751 G~S 753 (1036)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 765
No 277
>PF05729 NACHT: NACHT domain
Probab=98.05 E-value=5.3e-05 Score=75.96 Aligned_cols=140 Identities=14% Similarity=0.202 Sum_probs=74.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC--------CC-eEEEechhhhhh------------hccCchhHHHH-HHHHhhcCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN--------VP-FITVSGSEFLEM------------FVGVGPSRVRD-MFSMARKHA 638 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag--------vp-fi~Is~se~~e~------------~vG~~~~~vr~-lF~~Ar~~a 638 (1036)
-++|+|+||+|||++++.++..+. .+ ++.+++.++... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 378999999999999999997551 11 334444333221 01111111222 122334456
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc--cccHHhhCCCCcceEEEecCC
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD--VLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd--~LDpALlRpGRFdr~I~i~~P 716 (1036)
.++|+||.+|.+...... .........+.+++.. ....++-+|.++.... .+...+.. ...+.+...
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 789999999999642211 0001122233344332 1223444444443221 22222222 256889999
Q ss_pred ChhhHHHHHHHhcCC
Q psy5440 717 DIKGRASIFKVHLKP 731 (1036)
Q Consensus 717 d~eeR~~IL~~~L~~ 731 (1036)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988763
No 278
>KOG1970|consensus
Probab=97.97 E-value=0.00018 Score=84.95 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe-chhhh--hh----------hccCchhHHHHHHHHhh-----------
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVS-GSEFL--EM----------FVGVGPSRVRDMFSMAR----------- 635 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is-~se~~--e~----------~vG~~~~~vr~lF~~Ar----------- 635 (1036)
+-+||+||+||||||.++.++.++|..++.=+ +-.+. +. +...--.......+.+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 35789999999999999999999998777543 11111 10 11111111122223331
Q ss_pred -cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCC------CCcc
Q psy5440 636 -KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRP------GRFD 708 (1036)
Q Consensus 636 -~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRp------GRFd 708 (1036)
...|.+|+|||+-..... + ....+..+|.++-....-.-|++|.-++.++..++..+.| .|++
T Consensus 191 ~~~~~~liLveDLPn~~~~--------d--~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~ 260 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYR--------D--DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS 260 (634)
T ss_pred cccCceEEEeeccchhhhh--------h--hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc
Confidence 134679999999766421 1 2233444444333222222233333334444444433332 2554
Q ss_pred eEEEecCCChhhHHHHHHHhcCCCCC-----CCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 709 RQIFVPAPDIKGRASIFKVHLKPLKT-----DLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 709 r~I~i~~Pd~eeR~~IL~~~L~~l~~-----~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
.|.|.+-...-..+.|+..++.... .+.....+..++... ++||+..++.--+.+
T Consensus 261 -~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 261 -NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred -eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 4777666655555666655542221 122334444455443 469999888765554
No 279
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.96 E-value=0.00012 Score=80.95 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh--cCCC---eEEEechh------hhh----hhc
Q psy5440 556 VEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE--ANVP---FITVSGSE------FLE----MFV 620 (1036)
Q Consensus 556 ~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e--agvp---fi~Is~se------~~e----~~v 620 (1036)
.++.++.+.|.... ...+-+.|+|++|+|||+||+.+++. .... .+.++.+. +.. ...
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 34556666654422 23456899999999999999999987 3222 22333221 111 110
Q ss_pred --------cCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 621 --------GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 621 --------G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
......+.+.+...-...+++|+||+++... .+..+...+.. ...+..||.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~kilvTTR 137 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPS--FSSGSKILVTTR 137 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HC--HHSS-EEEEEES
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc----------------ccccccccccc--cccccccccccc
Confidence 1112223333333434558999999997652 22222222221 123456666776
Q ss_pred CCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC--CCCChhhHHHHHhhcCCCCC
Q psy5440 693 RVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK--TDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 693 ~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~--~~l~~~~l~~~LA~~T~G~S 753 (1036)
...... .... -+..+.++..+.++-.++|..+..... .....+..++.+++.+.|..
T Consensus 138 ~~~v~~-~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 138 DRSVAG-SLGG---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp CGGGGT-THHS---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred cccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 543221 2211 156799999999999999998876433 12233556678888887753
No 280
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.95 E-value=7.7e-05 Score=81.19 Aligned_cols=126 Identities=22% Similarity=0.274 Sum_probs=74.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRN 658 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 658 (1036)
..|..++||+|||||..++++|..+|.+++.++|++-++ ...+.++|.=+... .+-+.+||++.+-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 456789999999999999999999999999999998654 34566777544433 4699999999882
Q ss_pred CCCChhHHHHHHHHHHH----hhcC-----------cCCCCeEEEEecCC----CccccHHhhCCCCcceEEEecCCChh
Q psy5440 659 FGGHSEQENTLNQLLVE----MDGF-----------NTTTNVVVLAATNR----VDVLDKALLRPGRFDRQIFVPAPDIK 719 (1036)
Q Consensus 659 ~~~~~e~~~~LnqLL~e----mDg~-----------~~~~~ViVIaaTN~----pd~LDpALlRpGRFdr~I~i~~Pd~e 719 (1036)
.+.-.++.+.+.. +..- .-+.++-+..|.|. ...|++.|+. -| |.+.+..||..
T Consensus 98 ----~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 98 ----EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ----HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 2222223222222 2210 11223445556663 3468888876 44 88999999976
Q ss_pred hHHHHH
Q psy5440 720 GRASIF 725 (1036)
Q Consensus 720 eR~~IL 725 (1036)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 281
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.93 E-value=8.1e-05 Score=86.67 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=38.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
..++++.||+|||||++|.+++..+ | -.++.+.++.... . ..+.. -....+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCC
Confidence 3579999999999999999988762 3 2233344332111 0 11111 133579999999876
No 282
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.90 E-value=3.6e-05 Score=81.61 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh-hhhcc----------------------CchhHHHH
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL-EMFVG----------------------VGPSRVRD 629 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~-e~~vG----------------------~~~~~vr~ 629 (1036)
.....-++|+||||+|||++|..++.+. +.+.++++..++. +.+.. .....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 3334457999999999999999988643 6678888876521 10000 00011333
Q ss_pred HHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 630 MFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 630 lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
+.+.+....|++|+||-|.++.+..... ......+.+..++..|..+....++.+|.+...
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 3444555578999999999986422111 111222334444444444445667777777543
No 283
>KOG0480|consensus
Probab=97.90 E-value=8.9e-05 Score=88.46 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=95.4
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhh--hcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccC
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYID--LGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGV 622 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~--lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~ 622 (1036)
|-.|.|.+.+|.-|. +..+---.++.. ..++-.-+||++|.|||||+-+.+++++-+-..++ +++.. ..-.|.
T Consensus 344 ~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGka--SSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKA--SSAAGL 418 (764)
T ss_pred CccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcc--cccccc
Confidence 666899999998774 222333333322 22344457999999999999999999987755443 33221 011222
Q ss_pred chhHHHHH--HH---Hhhc---CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----------cCCC
Q psy5440 623 GPSRVRDM--FS---MARK---HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----------NTTT 683 (1036)
Q Consensus 623 ~~~~vr~l--F~---~Ar~---~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----------~~~~ 683 (1036)
+++-+++- ++ +|-. ....|-.|||+|.+.-+ + -..+++.|+.- .-+.
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------d----qvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------D----QVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------h----HHHHHHHHHhheehheecceEEeecc
Confidence 22222210 11 1111 12358889999998421 1 12344444421 1133
Q ss_pred CeEEEEecCCCc-------------cccHHhhCCCCcceEE-EecCCChhhHHHHHHHhcC
Q psy5440 684 NVVVLAATNRVD-------------VLDKALLRPGRFDRQI-FVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 684 ~ViVIaaTN~pd-------------~LDpALlRpGRFdr~I-~i~~Pd~eeR~~IL~~~L~ 730 (1036)
+.-||||+|... .++++|++ |||..+ -++.|+...-..|-++.+.
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 456889998533 57899999 999865 4577877666555555543
No 284
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.90 E-value=4.5e-05 Score=71.83 Aligned_cols=91 Identities=30% Similarity=0.333 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHh----ccCCceeeeHHHHHHHHhhCCceeEEEEEcCeEE-----------EEEEcCCCCCCCc
Q psy5440 398 YFMYGLIGSVAVLAAAVM----YEMNYKEITWKDFINNVLTKGIVEKLEVVNKKWV-----------RVKLLPGNSMDGA 462 (1036)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~f~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~~ 462 (1036)
|++|++++++++++++++ ..+..++|+|++|++ ++++|+|++|+|.++... ......+.. ..
T Consensus 1 ~~~~ili~~vi~~l~~~~~~~~~~~~~~~i~YS~F~~-~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (110)
T PF06480_consen 1 IILYILIILVILLLFNFFFFNSNNSQTKEISYSEFLQ-MLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSK--YT 77 (110)
T ss_dssp ------------------S------SSEE--HHHHHH-TGGGT-EEEEEEETTTEE---------EEEE-TTTS-S--TT
T ss_pred CcceehhHHHHHHHHHHHHhhcccCCCcEECHHHHHH-HHHcCCEEEEEEECCEEEEeeeccccccccccccCCCc--cE
Confidence 355554444444433332 234557999999997 899999999999876544 111111111 11
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcCCCCC
Q psy5440 463 NFLWFNIGSVDSFERNLELAQAQMHIDPA 491 (1036)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 491 (1036)
.+.....+..+.|.+.|..+..+.++...
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~v~~~ 106 (110)
T PF06480_consen 78 TFYTPSIPSVDSFDEFLIEALVEKGVKYE 106 (110)
T ss_dssp --EEEE-S-HHHHHHHHHHHHHHTT--TT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHCCCccc
Confidence 23344555678899999988888887654
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=9.3e-05 Score=82.92 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=84.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec--------hhhhhhh-cc----CchhHHHHHHHHhhcC----C
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG--------SEFLEMF-VG----VGPSRVRDMFSMARKH----A 638 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~--------se~~e~~-vG----~~~~~vr~lF~~Ar~~----a 638 (1036)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+| .|+...+ .+ -+-..+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4668889999999999999999999977542101112 1111000 11 1244567666655432 2
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCC
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~P 716 (1036)
--|++||++|.+. ...-|.||..++ .++.++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt--------------~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT--------------LDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3699999999984 246688888887 477789999999999999999998 76 34666554
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=97.82 E-value=1.6e-05 Score=89.10 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=53.0
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCc-e--eEEecC---ChhhHHHHHHhhhc
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK-G--AMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pk-G--vLL~Gp---GKt~la~a~a~e~~ 198 (1036)
-++|+.|++++|++|+|++.++..++.+.++|...|+ | +||+|| |||++|+++|.++.
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998874 5 899999 99999999999875
No 287
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.78 E-value=5.9e-05 Score=87.18 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=62.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCC-CeEEEechhhhhh-------hccCchhHHHHHHHHhhcCCCeEEEEcCc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANV-PFITVSGSEFLEM-------FVGVGPSRVRDMFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-pfi~Is~se~~e~-------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 647 (1036)
...|+|+.|+||+|+|||+|.-.+...+.+ .=..+.-.+|+-. +.+. ..-+..+-+..... -.||++||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeee
Confidence 457999999999999999999999887754 1112222233221 1111 11122222222222 249999999
Q ss_pred hhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 648 DAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 648 DaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
+-- +-....++..|+..+- ..+|++|+|+|++
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 743 1122356677776663 4689999999976
No 288
>KOG0482|consensus
Probab=97.78 E-value=5.8e-05 Score=87.79 Aligned_cols=236 Identities=22% Similarity=0.225 Sum_probs=131.3
Q ss_pred cccccccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhc--CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe
Q psy5440 530 ESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG--AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF 607 (1036)
Q Consensus 530 ~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG--~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf 607 (1036)
+..++.+.|+ |.|.+++|+.|.-++- -.+.+-..-| ++-.-+|+|.|.||+-|+.|.+.|.+-+-...
T Consensus 334 ekLa~SiAPE--------IyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgv 403 (721)
T KOG0482|consen 334 EKLAASIAPE--------IYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGV 403 (721)
T ss_pred HHHHHhhchh--------hccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccc
Confidence 4455555555 8999999998864432 2222222123 33345799999999999999999998876655
Q ss_pred EEEe-chhhhhhhccCchhHHHHHHHH-------h-hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh-
Q psy5440 608 ITVS-GSEFLEMFVGVGPSRVRDMFSM-------A-RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD- 677 (1036)
Q Consensus 608 i~Is-~se~~e~~vG~~~~~vr~lF~~-------A-r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD- 677 (1036)
++.- +|. -+|.+++-+++-..- | .-....|-.|||+|.+..... ...| +++.|--..+.
T Consensus 404 YTTGrGSS----GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR---tAIH----EVMEQQTISIaK 472 (721)
T KOG0482|consen 404 YTTGRGSS----GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR---TAIH----EVMEQQTISIAK 472 (721)
T ss_pred eecCCCCC----ccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh---HHHH----HHHHhhhhhhhh
Confidence 5432 221 234444433322110 0 001134788999999853210 0111 12222111111
Q ss_pred -cCc--CCCCeEEEEecCCCc-------------cccHHhhCCCCcceEEEe-cCCChhhHHHHHHHh----cCCCCC--
Q psy5440 678 -GFN--TTTNVVVLAATNRVD-------------VLDKALLRPGRFDRQIFV-PAPDIKGRASIFKVH----LKPLKT-- 734 (1036)
Q Consensus 678 -g~~--~~~~ViVIaaTN~pd-------------~LDpALlRpGRFdr~I~i-~~Pd~eeR~~IL~~~----L~~l~~-- 734 (1036)
|+. -+.++-|+||.|... .|+.||++ |||..+-+ +.||.+.-..+.++. .....+
T Consensus 473 AGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~ 550 (721)
T KOG0482|consen 473 AGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPL 550 (721)
T ss_pred hccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCc
Confidence 221 244677889988532 68999999 99986655 678776555544432 221111
Q ss_pred ---CCChhhHHHHHh--hcC----------------------------C-CCCHHHHHHHHHHHHHHHHHhcCCcccHHH
Q psy5440 735 ---DLDRDDLSRKLA--ALT----------------------------P-GFTGADIANVCNEAALIAARDLHTTIVMKH 780 (1036)
Q Consensus 735 ---~l~~~~l~~~LA--~~T----------------------------~-G~SgaDL~~LvneAal~A~r~~~~~It~~d 780 (1036)
.++.+.+-+.|+ +.. . -.|++-|-.+++-+..+|..+....+..+|
T Consensus 551 ~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~D 630 (721)
T KOG0482|consen 551 DFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDD 630 (721)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 122222222111 100 1 235667777777777777777777788888
Q ss_pred HHHHHHHH
Q psy5440 781 FEQAIERV 788 (1036)
Q Consensus 781 ~~~Aierv 788 (1036)
+++|+.-+
T Consensus 631 V~EALRLm 638 (721)
T KOG0482|consen 631 VNEALRLM 638 (721)
T ss_pred HHHHHHHH
Confidence 88887643
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.001 Score=75.12 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=89.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCC-----------C--eEEEechhhhhhhccCchhHHHHHHHHhhc-----CC
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANV-----------P--FITVSGSEFLEMFVGVGPSRVRDMFSMARK-----HA 638 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagv-----------p--fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~-----~a 638 (1036)
+.+...||+|+.|+||+.+|+++|..+-| | ++.++.. +. ......++++.+.+.. ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCC
Confidence 45677899999999999999999998733 2 2222200 00 0122456666655432 24
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCCh
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDI 718 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~ 718 (1036)
.-|++||++|.+. ....|.||..++. ++.++++|..|+.++.|-|++++ |+ ..+.+.+|+.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 4799999998773 2456788888884 66778888888888999999988 65 5689999988
Q ss_pred hhHHHHHHH
Q psy5440 719 KGRASIFKV 727 (1036)
Q Consensus 719 eeR~~IL~~ 727 (1036)
++..+.|..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 888777664
No 290
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.73 E-value=2.9e-05 Score=86.94 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=52.2
Q ss_pred eccccchHHHHHHHHHHHhcCCchhHHhcCCCC--C-ceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 143 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKI--P-KGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~--p-kGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
++++|++++|++|+|++.++..++.+.++|... | .++||+|| |||++|+++|..+.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999886 3 38999999 999999999998864
No 291
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.70 E-value=0.00028 Score=72.94 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=59.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccCc-----------------------hhH---
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGVG-----------------------PSR--- 626 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~~-----------------------~~~--- 626 (1036)
+|++||||||||+|+..++.+. |.++++++..+-.+.+ .|.. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887644 6777777753221110 0110 000
Q ss_pred --HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 627 --VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 627 --vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
+..+...+....|.+|+||++..+... ........+..++..+.. .++.+|.+++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 233344445567899999999988532 112223344555555542 2555565555433
No 292
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00076 Score=75.81 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=86.7
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-------EEE-ech--------hhhhhh-cc--CchhHHHHHHHHhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-------ITV-SGS--------EFLEMF-VG--VGPSRVRDMFSMARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-------i~I-s~s--------e~~e~~-vG--~~~~~vr~lF~~Ar~ 636 (1036)
.+++..+||+|| +||+++|+++|..+-+.- -.+ +|. |+.... .| -.-..+|++...+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 366888999996 689999999998664321 000 111 111100 01 123567777665543
Q ss_pred ----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEE
Q psy5440 637 ----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIF 712 (1036)
Q Consensus 637 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~ 712 (1036)
....|++||++|.+. ....|.||..++ .++.++++|..|+.++.|-|.+++ |+ ..|.
T Consensus 99 ~p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~ 159 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMH--------------VNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFH 159 (290)
T ss_pred CcccCCcEEEEeehhhhcC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeee
Confidence 223699999999984 256788888888 366778999999999999999999 77 5577
Q ss_pred ecCCChhhHHHHHH
Q psy5440 713 VPAPDIKGRASIFK 726 (1036)
Q Consensus 713 i~~Pd~eeR~~IL~ 726 (1036)
|+. +.+...+++.
T Consensus 160 f~~-~~~~~~~~L~ 172 (290)
T PRK07276 160 FPK-NEAYLIQLLE 172 (290)
T ss_pred CCC-cHHHHHHHHH
Confidence 855 5555555554
No 293
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00032 Score=77.35 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-----EEE-echhhhh--------hhc---cCchhHHHHHHHHhhc---
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPF-----ITV-SGSEFLE--------MFV---GVGPSRVRDMFSMARK--- 636 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-----i~I-s~se~~e--------~~v---G~~~~~vr~lF~~Ar~--- 636 (1036)
.+|..+||+||+|+||..+|.++|..+-+.= -.+ +|..+.. .+. .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3577899999999999999999998663321 000 1111111 010 1233456666554322
Q ss_pred --CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEec
Q psy5440 637 --HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 637 --~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~ 714 (1036)
..--|++||++|.+. ....|.||..++ .++.++++|..|+.++.|-|.+++ |.. .+.++
T Consensus 85 e~~~~KV~II~~ae~m~--------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhC--------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 124699999999983 256788888888 477889999999999999999999 764 36665
Q ss_pred CC
Q psy5440 715 AP 716 (1036)
Q Consensus 715 ~P 716 (1036)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 294
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.63 E-value=0.00026 Score=84.24 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=56.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccC--------chhHHHHHHHHhhcC
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGV--------GPSRVRDMFSMARKH 637 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~--------~~~~vr~lF~~Ar~~ 637 (1036)
|.....-+||+||||+|||+|+..+|... +.++++++..+-.+.. .|. ....+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444457999999999999999998755 6788888876544321 111 123456677777777
Q ss_pred CCeEEEEcCchhhhh
Q psy5440 638 APCILFIDEIDAVGR 652 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~ 652 (1036)
.|.+|+||+|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 295
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=0.00018 Score=77.90 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=22.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.++|+|+||||||+||.+||.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 296
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.57 E-value=0.00018 Score=77.72 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh-hhh--h-------hccCchhHHHHHHHHhhc--CCCeEEEE
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE-FLE--M-------FVGVGPSRVRDMFSMARK--HAPCILFI 644 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se-~~e--~-------~vG~~~~~vr~lF~~Ar~--~aP~ILfI 644 (1036)
+.|.-+||||+||+|||++|+.+++. ..++..+++. .+. . -....-..+.+.+..+.. ....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34667999999999999999999742 2233333321 000 0 001111233333433322 33579999
Q ss_pred cCchhhhh
Q psy5440 645 DEIDAVGR 652 (1036)
Q Consensus 645 DEIDaL~~ 652 (1036)
|.|+.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99998854
No 297
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.56 E-value=0.00034 Score=79.57 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=70.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-------------h---ccCchhHHHHHHHHhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-------------F---VGVGPSRVRDMFSMARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-------------~---vG~~~~~vr~lF~~Ar~ 636 (1036)
.+..+-++|+||||||||+||..++.++ +.+++++++.+..+. + ....+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3444457899999999999988876544 677888876543221 0 11112223333334456
Q ss_pred CCCeEEEEcCchhhhhcCCCC-CCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 637 HAPCILFIDEIDAVGRKRGGR-NFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~~-~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
..+.+|+||-+.++.++..-. ..+.. ....+.++++|..|.+.-...++.+|.+..
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 778999999999997542211 11111 123345566666666665667777777744
No 298
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00035 Score=81.24 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=54.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccC--------chhHHHHHHHHhhcCC
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGV--------GPSRVRDMFSMARKHA 638 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~--------~~~~vr~lF~~Ar~~a 638 (1036)
+....-+||+|+||+|||+|+..+|... +.+++++++.+-.+.. .|. ....+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4444458999999999999999998754 4578888765432211 111 1234566777777778
Q ss_pred CeEEEEcCchhhhh
Q psy5440 639 PCILFIDEIDAVGR 652 (1036)
Q Consensus 639 P~ILfIDEIDaL~~ 652 (1036)
|.+|+||+|..+..
T Consensus 159 ~~lVVIDSIq~l~~ 172 (372)
T cd01121 159 PDLVIIDSIQTVYS 172 (372)
T ss_pred CcEEEEcchHHhhc
Confidence 99999999999864
No 299
>KOG0477|consensus
Probab=97.54 E-value=0.00035 Score=83.19 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=86.1
Q ss_pred cccChHHHHHHHHHHHH--hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchh
Q psy5440 548 VAGCEEAKVEIMEFVNF--LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS 625 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~--Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~ 625 (1036)
|.|.+.+|..+.-.+-- -+++.-- .-++-.-++||+|.|||||+.+.|.++.-+...++..--.. ..+|.++.
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa~ 525 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTAY 525 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeEE
Confidence 78888888776432211 2232210 11223346999999999999999999998877666542110 11222221
Q ss_pred HHH-----HHHHHhhc---CCCeEEEEcCchhhhhcCCCCCCCCChhHHHH---HH--HHHHHhhcCcCCCCeEEEEecC
Q psy5440 626 RVR-----DMFSMARK---HAPCILFIDEIDAVGRKRGGRNFGGHSEQENT---LN--QLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 626 ~vr-----~lF~~Ar~---~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~---Ln--qLL~emDg~~~~~~ViVIaaTN 692 (1036)
..+ ++--+|-. ....|-+|||+|.+...... ..|..+++. +. .+...+ +..+.||||+|
T Consensus 526 v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsL-----qArctvIAAan 597 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSL-----QARCTVIAAAN 597 (854)
T ss_pred EeeCCccceeeeccCeEEEccCceEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecC
Confidence 111 11111110 11348889999998532111 122222211 00 011111 24568999998
Q ss_pred CCc-------------cccHHhhCCCCcceEEEec---CCChhhH--HHHHHHhcC
Q psy5440 693 RVD-------------VLDKALLRPGRFDRQIFVP---APDIKGR--ASIFKVHLK 730 (1036)
Q Consensus 693 ~pd-------------~LDpALlRpGRFdr~I~i~---~Pd~eeR--~~IL~~~L~ 730 (1036)
... .|-..+++ |||..-.+. .|-.+++ .-++..|.+
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred CCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 521 35556667 899755553 2333333 334455554
No 300
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.53 E-value=0.00033 Score=75.27 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=64.6
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh----hhhccC---------------c----hhHHH
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL----EMFVGV---------------G----PSRVR 628 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~----e~~vG~---------------~----~~~vr 628 (1036)
|.+...-++|+||||+|||++|..+|.+. +.+++++++..+. ...... . ...++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 34444457999999999999999998744 6788888876221 100000 0 01112
Q ss_pred HHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 629 DMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 629 ~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
.+....+ ..+.+|+||-+.++.+..-.. .....+..+.+.+++..|-.+....++.||.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222222 578899999999986432110 0112223344455444444443455677776644
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.00035 Score=89.47 Aligned_cols=141 Identities=29% Similarity=0.349 Sum_probs=96.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh---hh----ccC--chhHHHH-HHHHhhcCCCeEEEEcCc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE---MF----VGV--GPSRVRD-MFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e---~~----vG~--~~~~vr~-lF~~Ar~~aP~ILfIDEI 647 (1036)
..+++||.|.||+|||+|..|+|++.|-.++.||.++-.+ .| .+. ++-+.++ -|-.|.+. ..-|++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 4578999999999999999999999999999999886433 21 111 1112222 23333333 248999999
Q ss_pred hhhhhcCCCCCCCCChhHHHHHHHHHH--------Hhh-cCcCCCCeEEEEecCCCc------cccHHhhCCCCcceEEE
Q psy5440 648 DAVGRKRGGRNFGGHSEQENTLNQLLV--------EMD-GFNTTTNVVVLAATNRVD------VLDKALLRPGRFDRQIF 712 (1036)
Q Consensus 648 DaL~~~r~~~~~~~~~e~~~~LnqLL~--------emD-g~~~~~~ViVIaaTN~pd------~LDpALlRpGRFdr~I~ 712 (1036)
.... ...-.-||..|. ++| -|...++..|.||-|.-+ .|+..++. ||. +|+
T Consensus 1621 NLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 NLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 6431 112233444443 222 134467889999988644 68999998 995 589
Q ss_pred ecCCChhhHHHHHHHhcCCCC
Q psy5440 713 VPAPDIKGRASIFKVHLKPLK 733 (1036)
Q Consensus 713 i~~Pd~eeR~~IL~~~L~~l~ 733 (1036)
++..+.++...|.....+...
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~v~ 1707 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQVN 1707 (4600)
T ss_pred ecccccchHHHHHHhhCCccC
Confidence 999999999999988877554
No 302
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.49 E-value=0.0001 Score=81.39 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCc---eeEEecC---ChhhHHHHHHhhhc
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK---GAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pk---GvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
..+|++|++++|+.|+|++.+++......+.|...+. .+||+|| |||++|+++|.+..
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999997777777788988665 5789999 99999999999864
No 303
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00049 Score=70.39 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.+.-++++|+||+|||+++..+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 35568999999999999999999866
No 304
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.46 E-value=0.00028 Score=74.47 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=61.6
Q ss_pred eEEeCCCCCcHHHHHHHH-HH---hcCCCeEEEechhhh-hhhc---cCchh-------------HHHHHHHHhhcCCCe
Q psy5440 582 AMLTGPPGTGKTLLAKAT-AG---EANVPFITVSGSEFL-EMFV---GVGPS-------------RVRDMFSMARKHAPC 640 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAI-A~---eagvpfi~Is~se~~-e~~v---G~~~~-------------~vr~lF~~Ar~~aP~ 640 (1036)
.|++|.||+|||+.|-.. .. ..|.++++ |...+. +... +.... ....+..-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988665 43 33777766 544222 1110 10000 001111111112458
Q ss_pred EEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCC
Q psy5440 641 ILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 641 ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~P 716 (1036)
||+|||++.+.+.|.... ......+ ++|.. ....++-||.+|..+..||+.+++ +.+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999987764410 1112233 33322 345678999999999999999987 88888877544
No 305
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.46 E-value=0.00039 Score=77.49 Aligned_cols=113 Identities=23% Similarity=0.392 Sum_probs=68.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCC----------CeEEEe-chhhhhhhc-------c------CchhHHHHHHHHhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANV----------PFITVS-GSEFLEMFV-------G------VGPSRVRDMFSMAR 635 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagv----------pfi~Is-~se~~e~~v-------G------~~~~~vr~lF~~Ar 635 (1036)
++++|.||+|+|||+|.+++++...- .+..++ ..++...+. + ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999997632 222222 123221111 1 11122345667777
Q ss_pred cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHh--------hCCCCc
Q psy5440 636 KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL--------LRPGRF 707 (1036)
Q Consensus 636 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpAL--------lRpGRF 707 (1036)
...|.||++||+.. ...+..++..+. .++.||++|+.++ +..+. +..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCce
Confidence 78999999999621 123444554442 3677888888643 33333 334567
Q ss_pred ceEEEec
Q psy5440 708 DRQIFVP 714 (1036)
Q Consensus 708 dr~I~i~ 714 (1036)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7777663
No 306
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.46 E-value=0.00033 Score=67.03 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eag 604 (1036)
|+|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988664
No 307
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.44 E-value=8.7e-05 Score=97.73 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHH
Q psy5440 937 VRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMI 978 (1036)
Q Consensus 937 v~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~ 978 (1036)
+...|-|.|+--..+.-.||..|+.|++.||++.-|-.+||.
T Consensus 2236 ~~ntL~ESYqYLsNlFlSN~~LLdQmtktLlkk~wLFp~Ei~ 2277 (2281)
T CHL00206 2236 RSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK 2277 (2281)
T ss_pred hhccchHHHHHHHHHHhhCcHHHHHHHHHHHHhcccCchHhh
Confidence 456788999999999999999999999999999999999996
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.43 E-value=0.00021 Score=85.99 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=46.5
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is~ 612 (1036)
.-|+|+.|++++++.+.+.+..- ...++. ..+-++|+||||+|||+||++||..+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~A-----a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHA-----AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHH-----HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 34999999999999887766331 011111 23468999999999999999999866 357777655
No 309
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.42 E-value=0.00073 Score=77.02 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=68.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-------------h---ccCchhHHHHHHHHhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-------------F---VGVGPSRVRDMFSMARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-------------~---vG~~~~~vr~lF~~Ar~ 636 (1036)
.+..+-++++||||||||+||-.++.++ +.+.++++..+-.+. + ....+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3333447899999999999999887544 677888876432211 0 11112222222233456
Q ss_pred CCCeEEEEcCchhhhhcCCC-CCCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 637 HAPCILFIDEIDAVGRKRGG-RNFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~-~~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
..+.+|+||-+-++.++... +..+.. ....+.+.+.|..|...-...++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67899999999999753221 111111 122344566666666555566777777644
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00067 Score=78.70 Aligned_cols=110 Identities=19% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc----C-CCeEEEechhhh-------hh---hccC------chhHHHHHHHHhhc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA----N-VPFITVSGSEFL-------EM---FVGV------GPSRVRDMFSMARK 636 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea----g-vpfi~Is~se~~-------e~---~vG~------~~~~vr~lF~~Ar~ 636 (1036)
....++|+||+|+||||++..+|..+ + ..+..+++..+. .. ..|. ....+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 34568999999999999999999764 3 234444443321 11 1111 112233333332
Q ss_pred CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCccccHHhh
Q psy5440 637 HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVDVLDKALL 702 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd~LDpALl 702 (1036)
....+|+||..... .....+...+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~-------------~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMS-------------QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCC-------------cccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 33479999997422 112345555555554433 245788888888887775544
No 311
>KOG2170|consensus
Probab=97.41 E-value=0.0011 Score=73.57 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=113.0
Q ss_pred ccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEE-----ec--h
Q psy5440 547 DVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-----VPFITV-----SG--S 613 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-----vpfi~I-----s~--s 613 (1036)
.|.|+.-+++.+...+.. +.++.. +.|--+=|+|++||||..+++.||+.+- -|++.. ++ .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478999999988877766 444432 3355667899999999999999999652 122211 00 0
Q ss_pred hhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHH---hhcCcCCCCeEEEEe
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVE---MDGFNTTTNVVVLAA 690 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~e---mDg~~~~~~ViVIaa 690 (1036)
.-++.|-.+-..+|+ ..+.....+|.++||+|.+- ...-+++.-+|+. .+|.. ....|+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~---~~v~~C~rslFIFDE~DKmp-----------~gLld~lkpfLdyyp~v~gv~-frkaIFIfL 221 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVR---GTVQACQRSLFIFDEVDKLP-----------PGLLDVLKPFLDYYPQVSGVD-FRKAIFIFL 221 (344)
T ss_pred HHHHHHHHHHHHHHH---HHHHhcCCceEEechhhhcC-----------HhHHHHHhhhhcccccccccc-ccceEEEEE
Confidence 111122222222333 33445666799999999983 3444556666653 22222 234566666
Q ss_pred cCCCc-ccc---HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-CCCChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 691 TNRVD-VLD---KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-TDLDRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 691 TN~pd-~LD---pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
+|.-. .|. -...+.|+--+.+.+..-...-+...+...-..+. ..+-...+++.+.-.-+ ..-+++..-+ ++.
T Consensus 222 SN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLP-Lek~hV~~C~-r~e 299 (344)
T KOG2170|consen 222 SNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLP-LEKRHVRSCI-RAE 299 (344)
T ss_pred cCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCc-ccHHHHHHHH-HHH
Confidence 66433 222 23345565555555433322222222222111111 11222222222221112 2345555433 333
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHcCc
Q psy5440 766 LIAARDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 766 l~A~r~~~~~It~~d~~~Aiervi~gl 792 (1036)
+. ...-..+.+-+++.++....-.
T Consensus 300 l~---~rg~~~d~~~~erva~~l~ffp 323 (344)
T KOG2170|consen 300 LR---KRGLAPDQDFVERVANSLSFFP 323 (344)
T ss_pred HH---hcccccchHHHHHHHHhhcccc
Confidence 32 2336778888888888876543
No 312
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.40 E-value=0.00057 Score=73.04 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=72.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh----hhccC---------------c----hhHHHH
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE----MFVGV---------------G----PSRVRD 629 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e----~~vG~---------------~----~~~vr~ 629 (1036)
.....-++++|+||+|||++|..+|.++ +.++++++...... ...+. . ...+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 3434448999999999999999998765 56777776542111 00000 0 011122
Q ss_pred HHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc-----cHHhhC-
Q psy5440 630 MFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL-----DKALLR- 703 (1036)
Q Consensus 630 lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L-----DpALlR- 703 (1036)
+..... ..+++|+||-+.++.+...... .........+..++..|..+....++.||.+....... .|..-+
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~ 173 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHT 173 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcc
Confidence 222222 2378999999999853211110 01112222333444334444445677777776543222 222100
Q ss_pred -CCCcceEEEecCCC
Q psy5440 704 -PGRFDRQIFVPAPD 717 (1036)
Q Consensus 704 -pGRFdr~I~i~~Pd 717 (1036)
....|..|.+....
T Consensus 174 ~~~~~d~~i~l~~~~ 188 (218)
T cd01394 174 LEHWSKVILRLEKLR 188 (218)
T ss_pred hhcceeEEEEEEEcC
Confidence 11456667776554
No 313
>KOG1968|consensus
Probab=97.38 E-value=0.0002 Score=90.35 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=122.4
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCch--hHhhhcCCCC-c-eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQ--QYIDLGAKIP-K-GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~--~~~~lG~~~p-k-GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
......++.|.......+.+..+..++++ .|...+-..- + .+|++||||+|||+.|.++|.+.+..++..|.++..
T Consensus 315 ~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 315 QPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred ccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 34555777777766666666555554332 1222111111 1 369999999999999999999999999999988655
Q ss_pred hhhc-----cC--chhHHHHHH---HHhhc-CCC-eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCC
Q psy5440 617 EMFV-----GV--GPSRVRDMF---SMARK-HAP-CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTN 684 (1036)
Q Consensus 617 e~~v-----G~--~~~~vr~lF---~~Ar~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ 684 (1036)
..+. +. ....+...| ..... +.. .||++||+|.+.. . ....-..+.++.. ...
T Consensus 395 Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~-------ks~ 459 (871)
T KOG1968|consen 395 SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK-------KSS 459 (871)
T ss_pred cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH-------hcc
Confidence 4321 11 112233333 00001 122 3999999998853 1 1111233444433 234
Q ss_pred eEEEEecCCCccccH-HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHH
Q psy5440 685 VVVLAATNRVDVLDK-ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNE 763 (1036)
Q Consensus 685 ViVIaaTN~pd~LDp-ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvne 763 (1036)
+-||++||....... ++. |-+..|+|+.|+...+..-+...+......++.+.+ +.+...+ ++||++.++.
T Consensus 460 ~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l-~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVL-EEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred CCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHH-HHHHHhc----ccCHHHHHHH
Confidence 467777776654444 333 344678999999999988888887765555665544 4555544 6799888776
Q ss_pred HHHH
Q psy5440 764 AALI 767 (1036)
Q Consensus 764 Aal~ 767 (1036)
-.+.
T Consensus 532 lq~~ 535 (871)
T KOG1968|consen 532 LQFW 535 (871)
T ss_pred Hhhh
Confidence 4433
No 314
>KOG1051|consensus
Probab=97.37 E-value=0.00089 Score=84.29 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=106.8
Q ss_pred ccccccC-hHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEech
Q psy5440 545 FKDVAGC-EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSGS 613 (1036)
Q Consensus 545 F~DV~G~-eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~s 613 (1036)
++-++|. ++ +++.+++-|-.. ..++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~de---eirRvi~iL~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDE---EIRRVIEILSRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchH---HHHHHHHHHhcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5557776 54 444455544222 22567999999999999999999855 3456666665
Q ss_pred hhh--hhhccCchhHHHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 614 EFL--EMFVGVGPSRVRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 614 e~~--e~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
.+. .++.|..+.+++.+..++. .....||||||++-+...... .......|-|-..+ ..+++-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nlLkp~L----~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANLLKPLL----ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHhhHHHH----hcCCeEEEec
Confidence 443 3567888899999999887 445689999999998654322 11223333333222 3445899998
Q ss_pred cCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhc
Q psy5440 691 TNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHL 729 (1036)
Q Consensus 691 TN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L 729 (1036)
|.... .=||+|-| ||+. +.++-|+......||+...
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLS 363 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhh
Confidence 87332 45899999 9975 6788888777666665443
No 315
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.32 E-value=0.001 Score=72.42 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=46.6
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh----hhhh--ccC------------------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF----LEMF--VGV------------------------ 622 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~----~e~~--vG~------------------------ 622 (1036)
.+...-++|+||||||||++|..++... +.+.++++..+- .... .|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4444568999999999999986554433 567777765421 1110 000
Q ss_pred -chhHHHHHHHHhhcCCCeEEEEcCchhhh
Q psy5440 623 -GPSRVRDMFSMARKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 623 -~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~ 651 (1036)
....+..+...+....|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344455555568899999998874
No 316
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.00047 Score=71.36 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=37.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHH
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSM 633 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~ 633 (1036)
-|+++||||+||||||+.|+..+++|++.++.--+...+.......+..+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~ 55 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNE 55 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHH
Confidence 48999999999999999999999999998875433222333333333333333
No 317
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.31 E-value=0.00065 Score=69.15 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
.+..++|+|+||||||++|+++|..++.+++.. .++.+...|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 456799999999999999999999999988854 444444333
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.28 E-value=0.001 Score=72.10 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.5
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
|.+....++++|+||||||+|+.+++.+. +.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 45555668999999999999999997543 6677777754
No 319
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0012 Score=76.49 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=43.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEechhh-------h---------hhhccCchhHHH---HHHHHhhc-
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGSEF-------L---------EMFVGVGPSRVR---DMFSMARK- 636 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~se~-------~---------e~~vG~~~~~vr---~lF~~Ar~- 636 (1036)
.||+||||+|||+|++.|++... +.++.+-..+. . +.+-.....+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998663 33222222221 1 111122223333 33344432
Q ss_pred ---CCCeEEEEcCchhhhhc
Q psy5440 637 ---HAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 637 ---~aP~ILfIDEIDaL~~~ 653 (1036)
....+||||||+.+.+.
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 35689999999998754
No 320
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.26 E-value=0.00029 Score=80.78 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=43.6
Q ss_pred ccceecc-ccchHHHHHHHHHH-----HhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 139 GVRFKDV-AGCEEAKVEIMEFV-----NFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 139 ~vtf~DV-aG~~eak~el~e~v-----~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.-.|+++ .|+.-+++=+..++ .||.. +|+++|+|+||||| |||++|+|+|++++..
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~------~~ik~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLAL------PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhc------cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 3467887 77777766555443 34433 78999999999999 9999999999999944
No 321
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.25 E-value=0.0022 Score=72.55 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=48.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEech-hhh-------hhhccCchhHHHHHHHHhhcCCCeEEEEc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGS-EFL-------EMFVGVGPSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~s-e~~-------e~~vG~~~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
.+++|++||+|+|||++++++++.. +..++.+.-. ++. ............+++..+-+..|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4579999999999999999999876 2334433211 111 11112222257788889999999999999
Q ss_pred Cch
Q psy5440 646 EID 648 (1036)
Q Consensus 646 EID 648 (1036)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 322
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.24 E-value=0.0002 Score=68.84 Aligned_cols=30 Identities=40% Similarity=0.787 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
|+|+||||+||||+|+.+|..++++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999998876554
No 323
>PRK14532 adenylate kinase; Provisional
Probab=97.24 E-value=0.0033 Score=65.66 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=29.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.++|.||||+||||+|+.+|...++++ ++..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998665 455555543
No 324
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.23 E-value=0.0016 Score=69.38 Aligned_cols=104 Identities=20% Similarity=0.363 Sum_probs=60.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh-----cCCCe-------------EEEechhhhh----hhccCchhHHHHHHHHhhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE-----ANVPF-------------ITVSGSEFLE----MFVGVGPSRVRDMFSMARKH 637 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e-----agvpf-------------i~Is~se~~e----~~vG~~~~~vr~lF~~Ar~~ 637 (1036)
+-++|+||+|+|||+|+|.++.. .|.++ ..++..+-+. .+. ....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 56899999999999999999863 34332 1111111110 010 1124567777776656
Q ss_pred CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 638 APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|.+|++||.-+-. ...........++..+. ..+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLK----NKNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHH
Confidence 88999999963211 11122233445565553 1256778888876644
No 325
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0025 Score=74.90 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=74.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG 660 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 660 (1036)
-++|+||.+||||++++.+.....-.+++++..|........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 689999999999999988888775546666655543321111 122222333333345799999998872
Q ss_pred CChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHH
Q psy5440 661 GHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASI 724 (1036)
Q Consensus 661 ~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~I 724 (1036)
.....++.|.+.. .. +|++.+++........+-.=+||. ..+.+.+.+..+...+
T Consensus 108 ---~W~~~lk~l~d~~---~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 108 ---DWERALKYLYDRG---NL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ---hHHHHHHHHHccc---cc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 2445566665321 11 445544443333333444446895 5678888888888653
No 326
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.19 E-value=0.001 Score=73.51 Aligned_cols=100 Identities=23% Similarity=0.323 Sum_probs=63.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC---CeEEEec-hh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV---PFITVSG-SE 614 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv---pfi~Is~-se 614 (1036)
.....+++++.-.....+.+.+++... .+...++|++||+|+|||++++++..+... .++.+.- .+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 345678999887776666666666553 112357999999999999999999997743 3444331 11
Q ss_pred hhhh------h-ccCchhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 615 FLEM------F-VGVGPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 615 ~~e~------~-vG~~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
+.-. + .........+++..+-+..|.+|+|+||.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1100 0 11233456788888889999999999994
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00059 Score=74.35 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=23.3
Q ss_pred cCCCCce--eEEeCCCCCcHHHHHHHHHHhc
Q psy5440 575 GAKIPKG--AMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 575 G~~~pkG--vLL~GPPGTGKTlLAkAIA~ea 603 (1036)
...+++| +-|.||+|||||||.+.||+-.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444 7899999999999999999843
No 328
>PF14516 AAA_35: AAA-like domain
Probab=97.16 E-value=0.019 Score=65.93 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=88.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-------h-----------ccC-------------chh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-------F-----------VGV-------------GPS 625 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-------~-----------vG~-------------~~~ 625 (1036)
.-+.+.||..+|||+|...+...+ +...+++++..+-.. | .+. ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 358899999999999999887655 778888887653210 0 000 112
Q ss_pred HHHHHHHHh---hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---CCCCeE-EEEecCCCcccc
Q psy5440 626 RVRDMFSMA---RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---TTTNVV-VLAATNRVDVLD 698 (1036)
Q Consensus 626 ~vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---~~~~Vi-VIaaTN~pd~LD 698 (1036)
.....|+.. ....|-||+|||||.+.... ......+..|-...+.-. ....+. |++.+..+....
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 233344431 22568999999999996311 111222222222222111 112232 333332222222
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
..-.+|-.+...|.++.-+.++...+++.|-.. ..... ++.|-..|.|..
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~~-~~~l~~~tgGhP 233 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQEQ-LEQLMDWTGGHP 233 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHHH-HHHHHHHHCCCH
Confidence 222345445567788888889988888777322 33333 566777888854
No 329
>PRK13949 shikimate kinase; Provisional
Probab=97.15 E-value=0.0028 Score=65.72 Aligned_cols=32 Identities=41% Similarity=0.534 Sum_probs=29.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
+.|+|+|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999988765
No 330
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.15 E-value=0.013 Score=66.22 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCC------------
Q psy5440 637 HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRP------------ 704 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRp------------ 704 (1036)
..+-||||||+|.+.+ + .+.++|..+.-+-...++++|.+.++ +.|..++...
T Consensus 171 ~~~iViiIDdLDR~~~----------~----~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP----------E----EIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCCc----------H----HHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHH
Confidence 3467999999999832 2 23344444443444578888888763 2222222210
Q ss_pred ---CCcceEEEecCCChhhHHHHHHHhcC
Q psy5440 705 ---GRFDRQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 705 ---GRFdr~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
--|+..+.+|.|+..+...++...+.
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 04677889999999888888877754
No 331
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.0038 Score=64.68 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
|+|+||||+||||+|+.+|...+++ .++..+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 6899999999999999999999854 555555554
No 332
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.14 E-value=0.0024 Score=72.58 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred cChHHHHHHHHHHHHhcCchhHh----hhc---CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe-EEEechhhhhh---
Q psy5440 550 GCEEAKVEIMEFVNFLKNPQQYI----DLG---AKIPKGAMLTGPPGTGKTLLAKATAGEANVPF-ITVSGSEFLEM--- 618 (1036)
Q Consensus 550 G~eeaK~eL~eiV~~Lk~p~~~~----~lG---~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf-i~Is~se~~e~--- 618 (1036)
-+..+...|..+.+.+..+..-. .+. ..+|+|+.|+|+-|.|||.|.-..-..+.++- ..+.-..|+-.
T Consensus 29 aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~ 108 (367)
T COG1485 29 AQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQ 108 (367)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHH
Confidence 34455556666555443332211 122 34789999999999999999999988774432 22222233321
Q ss_pred ----hccCchhHHHHHH-HHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 619 ----FVGVGPSRVRDMF-SMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 619 ----~vG~~~~~vr~lF-~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
..|... -+..+- +.++.. -||.|||+.-= +-...-+|..|+.+|- ..+|++++|+|.
T Consensus 109 ~l~~l~g~~d-pl~~iA~~~~~~~--~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 109 RLHTLQGQTD-PLPPIADELAAET--RVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred HHHHHcCCCC-ccHHHHHHHHhcC--CEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 123221 111111 112222 49999998631 1122356788887774 459999999996
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK 733 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~ 733 (1036)
+- ..|. +++|.|.-.+ | -.++++.|+.-+.
T Consensus 171 ~P---~~LY-~dGlqR~~FL--P----~I~li~~~~~v~~ 200 (367)
T COG1485 171 AP---DNLY-KDGLQRERFL--P----AIDLIKSHFEVVN 200 (367)
T ss_pred Ch---HHhc-ccchhHHhhH--H----HHHHHHHheEEEE
Confidence 42 2333 2344443333 2 3456677765443
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.13 E-value=0.0023 Score=76.41 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=53.8
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccC--------chhHHHHHHHHhhcC
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGV--------GPSRVRDMFSMARKH 637 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~--------~~~~vr~lF~~Ar~~ 637 (1036)
|.....-+||+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444458999999999999999997754 4578888875433211 111 112345566666777
Q ss_pred CCeEEEEcCchhhhh
Q psy5440 638 APCILFIDEIDAVGR 652 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~ 652 (1036)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999853
No 334
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.00086 Score=69.56 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=29.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
|+++|+||+||||||+.++...+.|++.++.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7899999999999999999999999888765443
No 335
>KOG2228|consensus
Probab=97.11 E-value=0.0043 Score=70.06 Aligned_cols=160 Identities=19% Similarity=0.385 Sum_probs=95.9
Q ss_pred cccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHH-HH--hcCCCeEEEechhhh--h----
Q psy5440 548 VAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKAT-AG--EANVPFITVSGSEFL--E---- 617 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAI-A~--eagvpfi~Is~se~~--e---- 617 (1036)
+.|.......+.+++.. .... -...+++.||.|+|||.+.... +. +.|-.|+.+....++ +
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 56777777788777766 2111 1356999999999999876543 33 666666665432211 1
Q ss_pred ---------------hhccCchhHHHHHHHHhhc-----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 618 ---------------MFVGVGPSRVRDMFSMARK-----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 618 ---------------~~vG~~~~~vr~lF~~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
...|.....+..+.+..+. ..+.|.++||||.+.+. .+...+..|++.-.
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDisq 166 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHHh
Confidence 1234444445555544433 22345557799988632 11223344443322
Q ss_pred cCcCCCCeEEEEecCCCccc---cHHhhCCCCcceE-EEecCC-ChhhHHHHHHHhcC
Q psy5440 678 GFNTTTNVVVLAATNRVDVL---DKALLRPGRFDRQ-IFVPAP-DIKGRASIFKVHLK 730 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~L---DpALlRpGRFdr~-I~i~~P-d~eeR~~IL~~~L~ 730 (1036)
....++.||+.|.+-+.+ .....+ ||... |++.++ ...+-..|++..+.
T Consensus 167 --s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 167 --SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred --hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 245689999999887754 456666 99765 666544 56777777777763
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0031 Score=73.76 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc-------CCC--eEEEechhh-----hhh---------hccCchhHHHHHHHHh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA-------NVP--FITVSGSEF-----LEM---------FVGVGPSRVRDMFSMA 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvp--fi~Is~se~-----~e~---------~vG~~~~~vr~lF~~A 634 (1036)
.|+.++|+||+|+||||++..+|..+ +.. ++.+++-.. +.. .+......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46779999999999999999998754 233 444444211 111 1122223344444443
Q ss_pred hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC-CCeEEEEecCCCccccHHhhCCCC--cceEE
Q psy5440 635 RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRVDVLDKALLRPGR--FDRQI 711 (1036)
Q Consensus 635 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~-~~ViVIaaTN~pd~LDpALlRpGR--Fdr~I 711 (1036)
..-.+|+||++.... .+. ..+..+...++..... ..++|+.+|.....+...+.+-.. ++ .+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 334799999986542 111 1244444444433333 467888888877777655544211 23 34
Q ss_pred EecCCChhhHH
Q psy5440 712 FVPAPDIKGRA 722 (1036)
Q Consensus 712 ~i~~Pd~eeR~ 722 (1036)
-+...|...+.
T Consensus 318 I~TKlDet~~~ 328 (388)
T PRK12723 318 IFTKLDETTCV 328 (388)
T ss_pred EEEeccCCCcc
Confidence 44555544433
No 337
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.09 E-value=0.0014 Score=70.17 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=67.9
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---C------CCeEEEechhhhh--hh------cc---------------C
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---N------VPFITVSGSEFLE--MF------VG---------------V 622 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---g------vpfi~Is~se~~e--~~------vG---------------~ 622 (1036)
|.+...-+.|+||||+|||++|..+|..+ + ..+++++..+-.. .. .+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34444558999999999999999998754 3 5667777643211 00 00 0
Q ss_pred chhHHHHHHHHh----hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 623 GPSRVRDMFSMA----RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 623 ~~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
....+..++... ....+++|+||-|..+.+...... +...++.+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111222222222 245678999999998864321110 011234456677777776665666777776653
No 338
>PRK09354 recA recombinase A; Provisional
Probab=97.08 E-value=0.0021 Score=74.00 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh-------------h---ccCchhHHHHHHHHhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM-------------F---VGVGPSRVRDMFSMARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~-------------~---vG~~~~~vr~lF~~Ar~ 636 (1036)
.+..+-++|+||||||||+||-.++.++ +...++++...-.+. + ....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3333447899999999999999876543 677788876542221 0 11111222222233455
Q ss_pred CCCeEEEEcCchhhhhcCCC-CCCCC--ChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 637 HAPCILFIDEIDAVGRKRGG-RNFGG--HSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~-~~~~~--~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..+.+|+||=+-++.++..- +..+. .....+.+.+.|..+.+.-...++.+|.+.
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 67899999999998753211 11111 112234455555555544456677777663
No 339
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.05 E-value=0.0071 Score=69.12 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=47.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEe-chhhhhh------hccCchhHHHHHHHHhhcCCCeEEEEcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVS-GSEFLEM------FVGVGPSRVRDMFSMARKHAPCILFIDE 646 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is-~se~~e~------~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 646 (1036)
.+++|++|++|+|||+++++++... +..++.+. ..++.-. +.....-...+++..+-+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999999875 23344432 1122100 0111122467788888899999999999
Q ss_pred c
Q psy5440 647 I 647 (1036)
Q Consensus 647 I 647 (1036)
|
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 340
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0018 Score=69.71 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhhh------hhh--cc---------------C
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEFL------EMF--VG---------------V 622 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~~------e~~--vG---------------~ 622 (1036)
|.+...-+.|+||||+|||++|..++... +...++++..+-. +.. .+ .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34444557999999999999999998543 2567777764411 000 00 0
Q ss_pred chhHHHH----HHHHhhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 623 GPSRVRD----MFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 623 ~~~~vr~----lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
....+.. +-...... .+.+|+||-|.++........ ....+..+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0111112 22223344 789999999998854211110 011344456667777666655566777776643
No 341
>KOG0481|consensus
Probab=97.03 E-value=0.0059 Score=71.76 Aligned_cols=233 Identities=21% Similarity=0.268 Sum_probs=112.7
Q ss_pred cccChHHHHHHHHHHHHhcCchhHh-hhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhH
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYI-DLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSR 626 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~-~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~ 626 (1036)
|.|.+++|+.+.=++-- -..+.+. .+-.+-.-+|||.|.|||-|+.|.|-+-.-+-+-+++ |+.. +.-.|.+++-
T Consensus 333 IfG~~DiKkAiaClLFg-GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV 408 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFG-GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASV 408 (729)
T ss_pred hcCchhHHHHHHHHhhc-CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeE
Confidence 78888888776432211 0111110 0112223479999999999999999987755443332 2210 1112222222
Q ss_pred HHHH-----HHH--h-hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHH-HHHHHHHHhhcC--cCCCCeEEEEecCCCc
Q psy5440 627 VRDM-----FSM--A-RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQEN-TLNQLLVEMDGF--NTTTNVVVLAATNRVD 695 (1036)
Q Consensus 627 vr~l-----F~~--A-r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~-~LnqLL~emDg~--~~~~~ViVIaaTN~pd 695 (1036)
+|+- +-+ | .-....|+.|||+|.+- ..+....|+.+++ ++.-- -.|+ .-+.+.-|+||.|.+-
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr---e~DRVAIHEAMEQQTISIA---KAGITT~LNSRtSVLAAANpvf 482 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR---EDDRVAIHEAMEQQTISIA---KAGITTTLNSRTSVLAAANPVF 482 (729)
T ss_pred EecCCcceEEEecceEEEecCCEEEeehhhccC---chhhhHHHHHHHhhhHHHh---hhcceeeecchhhhhhhcCCcc
Confidence 2211 100 0 01124699999999883 2222222222222 11111 1122 1245677889998532
Q ss_pred -----------c--ccHHhhCCCCcceEEEecCCChh-----hHHHHHHHhcCCCC--C--------CCChhhHHHHH--
Q psy5440 696 -----------V--LDKALLRPGRFDRQIFVPAPDIK-----GRASIFKVHLKPLK--T--------DLDRDDLSRKL-- 745 (1036)
Q Consensus 696 -----------~--LDpALlRpGRFdr~I~i~~Pd~e-----eR~~IL~~~L~~l~--~--------~l~~~~l~~~L-- 745 (1036)
. +-+.+++ |||..+-+..--.+ -...++..|..... . .+..+.+.+.+
T Consensus 483 GRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Y 560 (729)
T KOG0481|consen 483 GRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQY 560 (729)
T ss_pred ccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHH
Confidence 2 3478898 99997777533222 23344555553211 1 11122222222
Q ss_pred --hhcCCCCCHHHHHHHHHHHHH--HH--------HHhcCCcccHHHHHHHHHHHHcCcc
Q psy5440 746 --AALTPGFTGADIANVCNEAAL--IA--------ARDLHTTIVMKHFEQAIERVVAGME 793 (1036)
Q Consensus 746 --A~~T~G~SgaDL~~LvneAal--~A--------~r~~~~~It~~d~~~Aiervi~gle 793 (1036)
.+..+.+|....++|.+.-.. .- .++..-+||...++. +-|+-..+.
T Consensus 561 cR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEA-IiRI~ESLA 619 (729)
T KOG0481|consen 561 CRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEA-IIRIAESLA 619 (729)
T ss_pred HHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHH-HHHHHHHHH
Confidence 223456677666666553211 00 111234689988865 445544443
No 342
>PRK04296 thymidine kinase; Provisional
Probab=97.03 E-value=0.0035 Score=66.17 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=41.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech----hhhh---hhccCc-----hhHHHHHHHHhh--cCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS----EFLE---MFVGVG-----PSRVRDMFSMAR--KHAPCILF 643 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s----e~~e---~~vG~~-----~~~vr~lF~~Ar--~~aP~ILf 643 (1036)
-.|++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 36899999999999998888765 5555555331 1100 011211 112344444443 34567999
Q ss_pred EcCchhh
Q psy5440 644 IDEIDAV 650 (1036)
Q Consensus 644 IDEIDaL 650 (1036)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 343
>KOG0743|consensus
Probab=97.02 E-value=0.00078 Score=78.50 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred cccEEecCCCCccceeccccchHHHHHHHH-HHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceee
Q psy5440 128 STAKLINSSDIGVRFKDVAGCEEAKVEIME-FVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERF 203 (1036)
Q Consensus 128 Skak~~~~~~~~vtf~DVaG~~eak~el~e-~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~ 203 (1036)
++.+-+.-+.+ -||+-||=-.+.|+++.+ +.+|+++.+=|++.|..=-||-||||| |||+|.-|||+..+=.++-
T Consensus 187 ~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd 265 (457)
T KOG0743|consen 187 GEWRSVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYD 265 (457)
T ss_pred CcceecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEE
Confidence 44444444455 799999999999999988 889999999999999988899999999 9999999999999855544
Q ss_pred ee
Q psy5440 204 LL 205 (1036)
Q Consensus 204 ~~ 205 (1036)
|-
T Consensus 266 Le 267 (457)
T KOG0743|consen 266 LE 267 (457)
T ss_pred ee
Confidence 43
No 344
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.00 E-value=0.00087 Score=75.26 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=45.2
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcccee
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLER 202 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~ 202 (1036)
+|+|+.|+++++++|..++...++. ...|..+||+|| |||+||+++|.+.+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999988653222 235678999999 999999999999986543
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.00 E-value=0.013 Score=69.61 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
..|..++|+|++|+|||++|..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 357889999999999999999998766 55666666543
No 346
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.00 E-value=0.0018 Score=64.02 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=29.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
++++||||+|||++|+.++...+ ...++..++....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999988 5556666665543
No 347
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.99 E-value=0.00075 Score=77.62 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=41.6
Q ss_pred cee-ccccchHHHHHHHHHHHhcCCchhHHhcCCC-CCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 141 RFK-DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK-IPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 141 tf~-DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~-~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
-|+ ||.|+++++ +++|+|++... .|.. -.+.++|+|| |||+||++||.+.++
T Consensus 48 ~F~~~~~G~~~~i---~~lv~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 48 FFDHDFFGMEEAI---ERFVNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccchhccCcHHHH---HHHHHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467 999999994 55667777766 2333 3478999999 999999999999986
No 348
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.95 E-value=0.0061 Score=67.26 Aligned_cols=112 Identities=15% Similarity=0.283 Sum_probs=60.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCC------eEEEech------hhhhhh--------ccCch-hHHH---HHHHHhh-
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVP------FITVSGS------EFLEMF--------VGVGP-SRVR---DMFSMAR- 635 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvp------fi~Is~s------e~~e~~--------vG~~~-~~vr---~lF~~Ar- 635 (1036)
-++|+||+|+|||+|++.+++..... ++.+... +|.... .+... .+++ .+...|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999877542 3332221 222221 11111 1121 2222222
Q ss_pred ---cCCCeEEEEcCchhhhhcC-------CCCCCCCC-hhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 636 ---KHAPCILFIDEIDAVGRKR-------GGRNFGGH-SEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 636 ---~~aP~ILfIDEIDaL~~~r-------~~~~~~~~-~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
.+...+|||||+..+.... +....++. ...-..+.+++..--.+..+..+.+++|..
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 2457899999999885432 22222232 222334456664333333455677775543
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.94 E-value=0.011 Score=68.08 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=48.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEe-chhhh--------hhh-----ccCchhHHHHHHHHhhcCCCeE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVS-GSEFL--------EMF-----VGVGPSRVRDMFSMARKHAPCI 641 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is-~se~~--------e~~-----vG~~~~~vr~lF~~Ar~~aP~I 641 (1036)
..+++|++|++|+|||++++++.....- .++.+. ..++. ... .+...-...++++.+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3568999999999999999999987642 333331 11111 000 1112224678888999999999
Q ss_pred EEEcCch
Q psy5440 642 LFIDEID 648 (1036)
Q Consensus 642 LfIDEID 648 (1036)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 350
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.0032 Score=66.85 Aligned_cols=66 Identities=24% Similarity=0.461 Sum_probs=42.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCC----CeEEEech-hhhh---------hhccCchhHHHHHHHHhhcCCCeEEEEcCc
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANV----PFITVSGS-EFLE---------MFVGVGPSRVRDMFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagv----pfi~Is~s-e~~e---------~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEI 647 (1036)
++++||+|+||||+++++++.... .++.+... ++.. .-++.......+.+..+-...|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 689999999999999999887742 22322211 1110 001222233455666677778999999998
No 351
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.92 E-value=0.0014 Score=70.74 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=40.0
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccce
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLE 201 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~ 201 (1036)
-+|+|+.|+++.+..++-++.-.+. .....--+||||| |||+||+.||.|++...
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 4899999999999999887775321 1223347999999 99999999999999663
No 352
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.90 E-value=0.0081 Score=68.22 Aligned_cols=73 Identities=22% Similarity=0.409 Sum_probs=48.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEec-hhhh-------hhh-----ccCchhHHHHHHHHhhcCCCe
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSG-SEFL-------EMF-----VGVGPSRVRDMFSMARKHAPC 640 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~-se~~-------e~~-----vG~~~~~vr~lF~~Ar~~aP~ 640 (1036)
.+...+++++||+|+|||++++++++.... ..+.+.- .++. ... .+...-.+.+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 444568999999999999999999987632 2223321 1110 000 011123456788888889999
Q ss_pred EEEEcCch
Q psy5440 641 ILFIDEID 648 (1036)
Q Consensus 641 ILfIDEID 648 (1036)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999984
No 353
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.88 E-value=0.017 Score=61.61 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
+.-++++|+||+|||++|+.+|.+++.++ +..+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 45689999999999999999999998765 344443
No 354
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0065 Score=62.81 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecC
Q psy5440 637 HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~ 715 (1036)
..|.||++||+-+-.. ....+.++.++-.+- ...+|-|+..|..++ .+++ -+|+.|.+.+
T Consensus 150 ~~P~ILLLDE~TsALD----------~~nkr~ie~mi~~~v---~~q~vAv~WiTHd~d---qa~r---ha~k~itl~~ 209 (223)
T COG4619 150 FMPKILLLDEITSALD----------ESNKRNIEEMIHRYV---REQNVAVLWITHDKD---QAIR---HADKVITLQP 209 (223)
T ss_pred cCCceEEecCchhhcC----------hhhHHHHHHHHHHHh---hhhceEEEEEecChH---HHhh---hhheEEEecc
Confidence 4599999999976542 122334444443322 356889999999775 3443 4777777743
No 355
>PRK06762 hypothetical protein; Provisional
Probab=96.85 E-value=0.0032 Score=64.34 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=32.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
|.-++|+|+||+|||++|+.++..++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 566899999999999999999999866677777766654
No 356
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.0083 Score=64.58 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=58.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH-----hcCCCeEEEe--------------chhhhhhhccCchhHHHHHHH-HhhcCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAG-----EANVPFITVS--------------GSEFLEMFVGVGPSRVRDMFS-MARKHA 638 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~-----eagvpfi~Is--------------~se~~e~~vG~~~~~vr~lF~-~Ar~~a 638 (1036)
++.++|+||.|+|||++.|.++. ..|.++..-+ ..+-+..........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36689999999999999999983 2343222111 110000001111122222222 122356
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHh
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpAL 701 (1036)
|++++|||+..-. ...+....+..++..+-. ....+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985421 011223344445555421 1122457788888777665554
No 357
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.84 E-value=0.0053 Score=58.43 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887755
No 358
>KOG2543|consensus
Probab=96.83 E-value=0.016 Score=66.57 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=93.1
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh------h-
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM------F- 619 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~------~- 619 (1036)
.|.+.+.+...|..++ -+.. -..|..+.|+|-.|||||.+.+++-+.++.|.+.++|-+.... .
T Consensus 7 ~v~~Re~qi~~L~~Ll---g~~~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLL---GNNS------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHh---CCCC------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 3556665555554433 2211 2468889999999999999999999999999999998765431 0
Q ss_pred --cc---C-------chhHHH---HHHHH--hhcC--CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc
Q psy5440 620 --VG---V-------GPSRVR---DMFSM--ARKH--APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN 680 (1036)
Q Consensus 620 --vG---~-------~~~~vr---~lF~~--Ar~~--aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~ 680 (1036)
++ . ....+. .+|.+ +..+ ..-.|++|.+|++.. .....++.|+..-.-.+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-----------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-----------MDAILLQCLFRLYELLN 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-----------cchHHHHHHHHHHHHhC
Confidence 10 0 111222 22333 2222 246788999999941 11234455544333222
Q ss_pred CCCCeEEEEecCCCccccHHhhCCCCcc-eEEEecCCChhhHHHHHHHhcC
Q psy5440 681 TTTNVVVLAATNRVDVLDKALLRPGRFD-RQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 681 ~~~~ViVIaaTN~pd~LDpALlRpGRFd-r~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
.+ .+.+|...-..+ +--+.+-|-++ ..++||.|+.++...|+..--+
T Consensus 147 ~~-~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 147 EP-TIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CC-ceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 22 333333322211 11222234443 4678999999999999876655
No 359
>PRK14528 adenylate kinase; Provisional
Probab=96.82 E-value=0.015 Score=61.24 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=26.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.+++.||||+|||++|+.+|...+++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887553
No 360
>PRK10536 hypothetical protein; Provisional
Probab=96.79 E-value=0.0052 Score=67.88 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=32.7
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
..+.-|.+.......+...+. +. .-++++||+|||||+||.|+|-+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 445556677766666555442 21 24899999999999999999885
No 361
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.79 E-value=0.0084 Score=65.39 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=30.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHh---cCCCeEEEechh
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGE---ANVPFITVSGSE 614 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~e---agvpfi~Is~se 614 (1036)
|......+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4555566899999999999999876654 367777776543
No 362
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.79 E-value=0.00084 Score=68.87 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=36.1
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC---eEEEechhh
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP---FITVSGSEF 615 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp---fi~Is~se~ 615 (1036)
++|-++..++|...++ .. ....++.++|+|++|+|||+|++++...+..+ ++.++|...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5677776666665554 11 12346789999999999999999988766333 778877765
No 363
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.78 E-value=0.0062 Score=67.24 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=29.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~ 612 (1036)
|.....-++|.||||+|||+++..+|..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44445568999999999999999887653 667777775
No 364
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.77 E-value=0.012 Score=67.26 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=47.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEe-chhhh---h---hhccCchhHHHHHHHHhhcCCCeEEEEcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVS-GSEFL---E---MFVGVGPSRVRDMFSMARKHAPCILFIDE 646 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is-~se~~---e---~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 646 (1036)
.++++++|++|+|||+++++++.+. ...++.+. ..++. . .+.....-...+++..+-+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4679999999999999999999863 12233322 11211 0 01111123467888999999999999999
Q ss_pred ch
Q psy5440 647 ID 648 (1036)
Q Consensus 647 ID 648 (1036)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 365
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.76 E-value=0.0066 Score=70.02 Aligned_cols=73 Identities=21% Similarity=0.400 Sum_probs=49.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEec-hhhhh-------h-h----ccCchhHHHHHHHHhhcCCCe
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSG-SEFLE-------M-F----VGVGPSRVRDMFSMARKHAPC 640 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~-se~~e-------~-~----vG~~~~~vr~lF~~Ar~~aP~ 640 (1036)
.+..+++|++||+|+|||++++++++.... .++.+.- .++.- . + .+...-...+++..+.+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999987642 3333221 11110 0 0 011223466788888899999
Q ss_pred EEEEcCch
Q psy5440 641 ILFIDEID 648 (1036)
Q Consensus 641 ILfIDEID 648 (1036)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999983
No 366
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.76 E-value=0.0026 Score=66.74 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=45.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEech-hhh-------hh------hccCchhHHHHHHHHhhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGS-EFL-------EM------FVGVGPSRVRDMFSMARKHAPCIL 642 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~s-e~~-------e~------~vG~~~~~vr~lF~~Ar~~aP~IL 642 (1036)
...++|.||+|+|||++++++++... ...+.+... ++. .. ..+.....+.+++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 45699999999999999999998763 223333211 110 00 001122346677778888889999
Q ss_pred EEcCc
Q psy5440 643 FIDEI 647 (1036)
Q Consensus 643 fIDEI 647 (1036)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99998
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=96.76 E-value=0.0097 Score=68.41 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
.|.-++|+||||+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 36779999999999999888888754 4555555543
No 368
>PRK13948 shikimate kinase; Provisional
Probab=96.75 E-value=0.004 Score=65.58 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
+.|..|+|+|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34678999999999999999999999999998655 34444333
No 369
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.74 E-value=0.0021 Score=63.61 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=40.1
Q ss_pred ccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 547 DVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.|.|++-|.+.+.+.+.. +.++. -+.|.-+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 589999999999887766 44431 2335556699999999999999999975
No 370
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.0015 Score=76.52 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=47.1
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhh
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTA 197 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~ 197 (1036)
.|+||.|++++++.|+.++.-=++ .+...|.++|.++||+|| |||++|+++|.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 599999999999999999986322 244468889999999999 9999999999864
No 371
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.73 E-value=0.0072 Score=65.44 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=30.2
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~ 612 (1036)
|.....-++|.|+||+|||+++..++..+ +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 55555568999999999999999887644 778888874
No 372
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.72 E-value=0.0066 Score=65.32 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=60.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhh----hh------------------hcc-------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFL----EM------------------FVG------- 621 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~----e~------------------~vG------- 621 (1036)
|.+....+|++||||||||+|+..++.+. |-+.++++..+-. +. +..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44455568999999999999999876433 7888888753211 10 000
Q ss_pred ----CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 622 ----VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 622 ----~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
....-+..+-+.++...+.+++||-+..+. ... ........+..|...+. ..++.+|.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011112333334455567899999999992 211 12333445555655553 34455555544
No 373
>PRK14527 adenylate kinase; Provisional
Probab=96.71 E-value=0.016 Score=60.97 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=28.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+.|+-++++||||+|||++|+.+|.+.+.+.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3466799999999999999999999998765543
No 374
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.71 E-value=0.0046 Score=64.22 Aligned_cols=27 Identities=44% Similarity=0.746 Sum_probs=22.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPF 607 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpf 607 (1036)
.++|+|+||+||||+++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 37999999999999999999887 5543
No 375
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.70 E-value=0.0036 Score=66.44 Aligned_cols=97 Identities=23% Similarity=0.316 Sum_probs=52.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh----hhhccCchhHHHHHHHHhh---------cCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL----EMFVGVGPSRVRDMFSMAR---------KHAPCILF 643 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~----e~~vG~~~~~vr~lF~~Ar---------~~aP~ILf 643 (1036)
+.++|.||||||||+++++++..+ +..++.+..+.-. ....+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 347889999999999999987644 5666666543211 1112222333433333221 12237999
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
|||+-.+. ...+..|+..+.. ....+++++=.+
T Consensus 99 VDEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 99 VDEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ESSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 99997773 1345666655542 234566666555
No 376
>PHA02624 large T antigen; Provisional
Probab=96.70 E-value=0.00086 Score=81.14 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=68.6
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
|.+.-+.+||+||||||||+|+++|++.++...+.+|++.-... |...-...--+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 33334489999999999999999999999666777876542221 221111111377888774322110
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcC-cC------CCC-----eEEEEecCCCccccHHhhCCCCcceEEEec
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGF-NT------TTN-----VVVLAATNRVDVLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~-~~------~~~-----ViVIaaTN~pd~LDpALlRpGRFdr~I~i~ 714 (1036)
..-+.| ....-+..|-..+||. .- ... --.|.||| ...|+..+.- ||-.++.|.
T Consensus 495 ~~Lp~G---~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 495 KDLPSG---QGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ccCCcc---cccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhcccc
Confidence 000000 0011123444555664 10 001 13566777 4567888887 898888873
No 377
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.70 E-value=0.0026 Score=63.61 Aligned_cols=39 Identities=31% Similarity=0.547 Sum_probs=31.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
.|+|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3799999999999999999999999887543 55444433
No 378
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=96.70 E-value=0.0064 Score=57.14 Aligned_cols=73 Identities=27% Similarity=0.327 Sum_probs=43.0
Q ss_pred CCccccchhHHHHHHHhcCCeeEEEEEcCeEE---------EEEEcCCCCCCCCceEEEEcCChhhHHHHHHHHHHhcCC
Q psy5440 4 MNYKEITWKDFINNVLTKGIVEKLEVVNKKWV---------RVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHI 74 (1036)
Q Consensus 4 ~~~~~IsYs~F~~~ll~~g~V~~V~i~~~~~~---------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 74 (1036)
...++|+||+|+ +++++|+|++|++.++... .+............++...+..++.+.+.|..+.++.++
T Consensus 25 ~~~~~i~YS~F~-~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v 103 (110)
T PF06480_consen 25 SQTKEISYSEFL-QMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEKGV 103 (110)
T ss_dssp -SSEE--HHHHH-HTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHTT-
T ss_pred CCCcEECHHHHH-HHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHCCC
Confidence 477899999999 5669999999999876655 111111111122224455566788899999999988887
Q ss_pred CCC
Q psy5440 75 DPA 77 (1036)
Q Consensus 75 ~~~ 77 (1036)
++.
T Consensus 104 ~~~ 106 (110)
T PF06480_consen 104 KYE 106 (110)
T ss_dssp -TT
T ss_pred ccc
Confidence 654
No 379
>PRK13947 shikimate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=66.98 Aligned_cols=31 Identities=35% Similarity=0.441 Sum_probs=28.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
+|+|.|+||+|||++|+.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987644
No 380
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.70 E-value=0.08 Score=60.33 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCeEEEEcCchhhhhcCCCC---CCCCChhHHHHHHHHHHHhhcCcC-CCCeEE--EEecCC---Cc--cccHHhhCCCC
Q psy5440 638 APCILFIDEIDAVGRKRGGR---NFGGHSEQENTLNQLLVEMDGFNT-TTNVVV--LAATNR---VD--VLDKALLRPGR 706 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~~r~~~---~~~~~~e~~~~LnqLL~emDg~~~-~~~ViV--IaaTN~---pd--~LDpALlRpGR 706 (1036)
-|.++-||++.++.....-. ....+...-.+...|+..+.+-.. ..+.+| +++|.. +. .++.+|....-
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 47788899999998653211 111223333455566655443333 334444 555532 22 56666664211
Q ss_pred ------cc-------------eEEEecCCChhhHHHHHHHhcCCCC--CCCChhhHHHHHhhcCCCCCHHHHH
Q psy5440 707 ------FD-------------RQIFVPAPDIKGRASIFKVHLKPLK--TDLDRDDLSRKLAALTPGFTGADIA 758 (1036)
Q Consensus 707 ------Fd-------------r~I~i~~Pd~eeR~~IL~~~L~~l~--~~l~~~~l~~~LA~~T~G~SgaDL~ 758 (1036)
|. ..|.++..+.+|-..+++++...-- .....+...+.+...+.| +++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhc
Confidence 11 1678999999999999999876321 223444455555544444 556554
No 381
>PRK05973 replicative DNA helicase; Provisional
Probab=96.69 E-value=0.006 Score=66.81 Aligned_cols=38 Identities=32% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
.....-+||.|+||+|||+++-.+|.+. |.+.++++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3333458999999999999999887644 7777777654
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.68 E-value=0.0047 Score=63.42 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=60.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhh--------hhhcc-----CchhHHHHHHHHhhcCCCeEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFL--------EMFVG-----VGPSRVRDMFSMARKHAPCIL 642 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~--------e~~vG-----~~~~~vr~lF~~Ar~~aP~IL 642 (1036)
....+.|.||+|+|||+|.+.+++.... --+.+++.++. ...++ .+..+-+-.+..|-...|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3345889999999999999999986521 11222222111 11111 112234445666667789999
Q ss_pred EEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 643 FIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 643 fIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
++||--.- -+....+.+.+++.++. .. +..+|.+|++++
T Consensus 105 llDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 105 ILDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EEECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 99997432 23444556666666553 22 445666676554
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0077 Score=63.21 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=27.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
-++|.||||+||||+|+.||.. .++..++-.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4799999999999999999999 555566655544
No 384
>PRK03839 putative kinase; Provisional
Probab=96.66 E-value=0.0014 Score=67.92 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999987653
No 385
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.65 E-value=0.0024 Score=72.96 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=46.9
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccce
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLE 201 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~ 201 (1036)
.+|+|+.|.+++++.|..++.-.+.+ ...|..+||||| |||+||+++|.+.+...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 48999999999999999988764332 246789999999 99999999999998653
No 386
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.65 E-value=0.008 Score=68.46 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=67.0
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhhh------hh--hccCch-------------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEFL------EM--FVGVGP------------- 624 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~~------e~--~vG~~~------------- 624 (1036)
|+....-++|+||||+|||++|..+|-.+ +..+++++..+-+ +. ..|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34545557899999999999999998653 3467777765411 00 001100
Q ss_pred ------hHHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 625 ------SRVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 625 ------~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
..+..+...... ..+.+|+||=|-++.+..-... +...++.+.+++++..|..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001122222333 4567999999999865321111 112233455666666665555566777777754
No 387
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.65 E-value=0.0074 Score=78.17 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=91.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh------hhhccCchhHH---HHHHHHhhcCCCeEEEEcCchhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL------EMFVGVGPSRV---RDMFSMARKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~------e~~vG~~~~~v---r~lF~~Ar~~aP~ILfIDEIDaL~ 651 (1036)
.+||-||..+|||++...+|++.|-.|+.||-.+.. ..|+......+ ..++-.|-++. .-|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 489999999999999999999999999999865443 33433322211 22333343332 47999998643
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHhhc---------CcCCCCeEEEEecCCCc------cccHHhhCCCCcceEEEecCC
Q psy5440 652 RKRGGRNFGGHSEQENTLNQLLVEMDG---------FNTTTNVVVLAATNRVD------VLDKALLRPGRFDRQIFVPAP 716 (1036)
Q Consensus 652 ~~r~~~~~~~~~e~~~~LnqLL~emDg---------~~~~~~ViVIaaTN~pd------~LDpALlRpGRFdr~I~i~~P 716 (1036)
....-..||.||..-.. ..+.+++.+.||-|.|- .|..|++. ||- .++|.--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 23445677888753221 13345678888888775 57889988 884 4677666
Q ss_pred ChhhHHHHHHHhcC
Q psy5440 717 DIKGRASIFKVHLK 730 (1036)
Q Consensus 717 d~eeR~~IL~~~L~ 730 (1036)
..++...||+..++
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 67778888876654
No 388
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.65 E-value=0.0048 Score=71.12 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=45.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCC----CeEEEe-chhhhh---------hhccCchhHHHHHHHHhhcCCCeEEEEc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANV----PFITVS-GSEFLE---------MFVGVGPSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagv----pfi~Is-~se~~e---------~~vG~~~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
..+|++||+|+||||+++++.+...- .++.+. ..++.. .-+|.......+.+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 35799999999999999999986642 233332 112110 0122222345666777778899999999
Q ss_pred Cc
Q psy5440 646 EI 647 (1036)
Q Consensus 646 EI 647 (1036)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 98
No 389
>PRK00625 shikimate kinase; Provisional
Probab=96.64 E-value=0.0017 Score=67.82 Aligned_cols=31 Identities=35% Similarity=0.497 Sum_probs=28.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 390
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.62 E-value=0.0078 Score=68.61 Aligned_cols=114 Identities=22% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhh---------hhhhccCc--------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEF---------LEMFVGVG-------------- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~---------~e~~vG~~-------------- 623 (1036)
+....-++|+||||+|||+||..+|-.+ +...++++..+- .+.+ +..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~-g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF-GVDPDAVLDNILYARAY 171 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc-CCChHHhcCcEEEecCC
Confidence 4444457899999999999999877422 456777775431 1111 111
Q ss_pred -hhH----HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 624 -PSR----VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 624 -~~~----vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
... +..+-.......+.+|+||-|-++.+..-.+ .+...++.+.+++++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 111 1222222334567899999999887532111 112233344577777766666566677776664
No 391
>PTZ00202 tuzin; Provisional
Probab=96.61 E-value=0.025 Score=66.56 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=49.3
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGS 613 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s 613 (1036)
-.-.+.+|-++...+|..++..+ ....|+-+.|+||+|+|||+|++.++..++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34668999999888887777542 233456789999999999999999999999887777754
No 392
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0037 Score=66.42 Aligned_cols=22 Identities=55% Similarity=0.733 Sum_probs=21.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 393
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.58 E-value=0.011 Score=67.08 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=66.1
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechh-hh-----hh--hccCchh------------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSE-FL-----EM--FVGVGPS------------ 625 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se-~~-----e~--~vG~~~~------------ 625 (1036)
|.....-++++||||+|||+||-.+|-.+ +...++|+..+ |. +. ..|....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34445557899999999999999998663 23778887654 11 00 0111100
Q ss_pred -------HHHHHHHHhhcC--CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 626 -------RVRDMFSMARKH--APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 626 -------~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
.+..+.+..... .+.+|+||-|-++.+..-.+. +...++.+.+++++..|..+....++.||.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 112222333333 367999999988754321111 112233455666666665555566777776643
No 394
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.58 E-value=0.055 Score=60.45 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=93.2
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhH
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSR 626 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~ 626 (1036)
+++=.+++.+.+..+...|..|. .++||.|.+|+||++++|-.|.-++..++.+..+.-.+ ...-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 57778889999988888876543 36899999999999999999999899998887543111 1111245
Q ss_pred HHHHHHHhh-cCCCeEEEEcCchh-----------hhhcCCCCCCCCChhHHHHHHHHHHHhhcC--c------------
Q psy5440 627 VRDMFSMAR-KHAPCILFIDEIDA-----------VGRKRGGRNFGGHSEQENTLNQLLVEMDGF--N------------ 680 (1036)
Q Consensus 627 vr~lF~~Ar-~~aP~ILfIDEIDa-----------L~~~r~~~~~~~~~e~~~~LnqLL~emDg~--~------------ 680 (1036)
++.++..|. ++.|++++|+|-+- |.....-...=..++.+.++..+-...... .
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~ 156 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE 156 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH
Confidence 666666554 45688888877542 222111111112345555555554433211 0
Q ss_pred -CCCC--eEEEEecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC
Q psy5440 681 -TTTN--VVVLAATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732 (1036)
Q Consensus 681 -~~~~--ViVIaaTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l 732 (1036)
-..+ |+++.....+. ..-|+|.. +. ....+..-+.+....+-..++...
T Consensus 157 rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 157 RVRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HHCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 1223 33333332222 22356665 33 344555566678888888887643
No 395
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.56 E-value=0.0093 Score=74.93 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=67.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHh---cCCCeEEEechhhhhh----hccC------------chhHHHHHHHHhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGE---ANVPFITVSGSEFLEM----FVGV------------GPSRVRDMFSMARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~e---agvpfi~Is~se~~e~----~vG~------------~~~~vr~lF~~Ar~ 636 (1036)
.....-++|+||||||||+||..++.+ .+...++++..+-... -.|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 344455899999999999999765543 3667777775442220 0111 11111112222345
Q ss_pred CCCeEEEEcCchhhhhcCCC-CCCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 637 HAPCILFIDEIDAVGRKRGG-RNFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~-~~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..+.+|+||-|.++.++... +..+.. ....+.++++|..|..+-...++.+|.+-
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 67899999999999853221 111111 22334556777777666666777777764
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.55 E-value=0.0073 Score=64.27 Aligned_cols=110 Identities=25% Similarity=0.301 Sum_probs=59.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh-------hhh--------c----cC-chhHHHHHHHHhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL-------EMF--------V----GV-GPSRVRDMFSMAR 635 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~-------e~~--------v----G~-~~~~vr~lF~~Ar 635 (1036)
|+-++|+||+|+||||.+-.+|..+ +..+-.+++..+. ..| . .. ....+++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6678999999999999988888755 4444444432221 111 1 11 1123445556655
Q ss_pred cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHH
Q psy5440 636 KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKA 700 (1036)
Q Consensus 636 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpA 700 (1036)
...-.+|+||=.-.. ..+.+...-+..++..+ ....-++|+.++-..+.++..
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHH
Confidence 544468998875221 11222233444444444 233456677777666666543
No 397
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.55 E-value=0.029 Score=72.07 Aligned_cols=151 Identities=21% Similarity=0.276 Sum_probs=82.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech--h-----hhh----hh----ccC-----------c----hhHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGS--E-----FLE----MF----VGV-----------G----PSRVRD 629 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s--e-----~~e----~~----vG~-----------~----~~~vr~ 629 (1036)
+-++++||+|.|||+++...+...+ ++..++.. + |.. .. .+. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887766 66655542 1 111 00 010 0 011223
Q ss_pred HHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc-HHhhCCCCc
Q psy5440 630 MFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD-KALLRPGRF 707 (1036)
Q Consensus 630 lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD-pALlRpGRF 707 (1036)
++..... ..|.+|+||++|.+. +....+.+..|+..+ ..++.+|.++.....+. ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~--- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR--- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---
Confidence 3333333 678999999999872 223334555555442 33444434454322222 122211
Q ss_pred ceEEEec----CCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 708 DRQIFVP----APDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 708 dr~I~i~----~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
+..+.+. ..+.++-.+++...+.. .++.+ .+..+.+.|.|..
T Consensus 174 ~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~~~~-~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQRLSS---PIEAA-ESSRLCDDVEGWA 219 (903)
T ss_pred CcceecCHHhCCCCHHHHHHHHHhccCC---CCCHH-HHHHHHHHhCChH
Confidence 2234444 56888888888765542 23333 3456777887764
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.023 Score=66.92 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=59.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhhh-------hh---ccC---chhHHHHHHHHhhcCCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFLE-------MF---VGV---GPSRVRDMFSMARKHAPCI 641 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~e-------~~---vG~---~~~~vr~lF~~Ar~~aP~I 641 (1036)
+.-++|+||+|+||||++..+|..+ |..+..+++..+.. .| .+. ....+.++...++.....+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999999754 33444444433211 11 111 1122334444444444577
Q ss_pred EEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhh
Q psy5440 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALL 702 (1036)
Q Consensus 642 LfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALl 702 (1036)
|+||=.-... .+......+..++...........++|+.+|...+.+...+.
T Consensus 303 VLIDTaGr~~---------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 303 ILIDTAGYSH---------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEeCCCCCc---------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 8888531110 111222223333332221122345777777777766655544
No 399
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.52 E-value=0.012 Score=61.37 Aligned_cols=94 Identities=12% Similarity=0.193 Sum_probs=54.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-----hh------------ccCchhHHHHHHHHhhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-----MF------------VGVGPSRVRDMFSMARKHAPCILF 643 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-----~~------------vG~~~~~vr~lF~~Ar~~aP~ILf 643 (1036)
-+|++|+||+|||++|..++.+.+.+++++......+ .. .-+....+..+++.. ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4799999999999999999999888877776543221 00 000111233333321 12356899
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
||-+..+..+.-... ........+..++..+.
T Consensus 82 ID~Lt~~~~n~l~~~--~~~~~~~~l~~li~~L~ 113 (170)
T PRK05800 82 VDCLTTWVTNLLFEE--GEEAIAAEIDALLAALQ 113 (170)
T ss_pred ehhHHHHHHHHhccc--chHHHHHHHHHHHHHHH
Confidence 999998865432110 00222344556666655
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.50 E-value=0.0086 Score=66.61 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=44.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEe-chhhhh-----hhcc-CchhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN---VPFITVS-GSEFLE-----MFVG-VGPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is-~se~~e-----~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
.++++||+|+|||++++++..... ..++.+. ..++.- ..+. .......++...+.+..|.+|+|+||.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 379999999999999999987663 2344442 112110 0011 111235667777788899999999994
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.021 Score=66.68 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh----h---h--
Q psy5440 552 EEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL----E---M-- 618 (1036)
Q Consensus 552 eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~----e---~-- 618 (1036)
+++.+.+.+.+.. +..+..+ ...|+-++|+||+|+||||++..+|..+ +..+..+++..+. + .
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555555433 3222111 2236779999999999999999999866 3445455543221 1 1
Q ss_pred -------hccCchhHHHHHHHHhhc-CCCeEEEEcCc
Q psy5440 619 -------FVGVGPSRVRDMFSMARK-HAPCILFIDEI 647 (1036)
Q Consensus 619 -------~vG~~~~~vr~lF~~Ar~-~aP~ILfIDEI 647 (1036)
++......+.+.+..++. ..-.+||||-.
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 112344555565655543 23468888865
No 402
>PRK13695 putative NTPase; Provisional
Probab=96.49 E-value=0.017 Score=59.76 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++|+|++|+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988765
No 403
>PRK13946 shikimate kinase; Provisional
Probab=96.48 E-value=0.0049 Score=64.52 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
.++.|+|+|+||+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3567999999999999999999999999998765
No 404
>KOG3347|consensus
Probab=96.47 E-value=0.0021 Score=65.06 Aligned_cols=35 Identities=34% Similarity=0.677 Sum_probs=29.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+||++|-||||||+++.+||...+.+++.+ ++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 4699999999999999999999999887665 4443
No 405
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.47 E-value=0.021 Score=61.42 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=61.1
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccC---------------chhH----
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGV---------------GPSR---- 626 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~---------------~~~~---- 626 (1036)
|.+...-+++.|+||+|||++|..++.+. +.+.++++..+-.+.. .|. ....
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 44444568999999999999999887543 6777777764322110 000 0000
Q ss_pred HHH----HHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 627 VRD----MFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 627 vr~----lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
+.. +...+.+..++.++||-+..+... ..........+..++..+. ..++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEc
Confidence 111 122234456788999999887221 1122334455666766664 23445555554
No 406
>PLN02200 adenylate kinase family protein
Probab=96.46 E-value=0.0033 Score=68.73 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=33.7
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.|.-++|.||||+|||++|+.+|.++|++ .+++++++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 45567779999999999999999999999865 567777654
No 407
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.46 E-value=0.013 Score=61.40 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred eEEeCCCCCcHHHHHHHHHH-----hcCCCeE--------------EEechhhhhhhccCchhHHHHHHHHhh-cCCCeE
Q psy5440 582 AMLTGPPGTGKTLLAKATAG-----EANVPFI--------------TVSGSEFLEMFVGVGPSRVRDMFSMAR-KHAPCI 641 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~-----eagvpfi--------------~Is~se~~e~~vG~~~~~vr~lF~~Ar-~~aP~I 641 (1036)
++|+||.|.|||++.|.++- .+|.++. .+...+-...-.+.....++.+-..+. ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 3343221 111111111111111222333222222 236899
Q ss_pred EEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 642 LfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
+++||+-.-. ...+.......++..+. ...+..+|.+|+..+
T Consensus 82 lllDEp~~g~---------d~~~~~~~~~~~l~~l~---~~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT---------STYDGVAIAAAVLEYLL---EKIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC---------CHHHHHHHHHHHHHHHH---hcCCCeEEEEecHHH
Confidence 9999985321 11223344455555543 222456777787765
No 408
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0043 Score=64.55 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=29.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
+.++|+|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999998664
No 409
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.44 E-value=0.02 Score=59.60 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=47.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-----h---h---------ccCchhHHHHHHHHhhcCCCeEEEE
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-----M---F---------VGVGPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-----~---~---------vG~~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
+|++|++|+|||++|..++...+.+.+++....-.+ . + ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988777888776443211 1 0 1122233444443222 4679999
Q ss_pred cCchhhhhcC
Q psy5440 645 DEIDAVGRKR 654 (1036)
Q Consensus 645 DEIDaL~~~r 654 (1036)
|-+..+..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887544
No 410
>PHA02774 E1; Provisional
Probab=96.43 E-value=0.013 Score=71.06 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEE-Eec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFIT-VSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~-Is~ 612 (1036)
.+++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 489999999999999999999998655443 554
No 411
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.0075 Score=65.10 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=45.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc--------CCCeEEEec-hhhhhhhccCc-------------hhHHHHHHHHhhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA--------NVPFITVSG-SEFLEMFVGVG-------------PSRVRDMFSMARKH 637 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea--------gvpfi~Is~-se~~e~~vG~~-------------~~~vr~lF~~Ar~~ 637 (1036)
.+.|+.|||||||||+.|-+|+-+ ...+..++- +++.....|.. .-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999999854 223444442 23322222221 11223456667889
Q ss_pred CCeEEEEcCchh
Q psy5440 638 APCILFIDEIDA 649 (1036)
Q Consensus 638 aP~ILfIDEIDa 649 (1036)
+|-||++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999953
No 412
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.42 E-value=0.0097 Score=65.23 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=29.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 6899999999999999999876 56777777654433
No 413
>KOG2383|consensus
Probab=96.41 E-value=0.013 Score=67.49 Aligned_cols=161 Identities=24% Similarity=0.303 Sum_probs=82.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE---EEechhhhhh-----------h----ccCchh----HHHHHHHH
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI---TVSGSEFLEM-----------F----VGVGPS----RVRDMFSM 633 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi---~Is~se~~e~-----------~----vG~~~~----~vr~lF~~ 633 (1036)
-.+|+|+.|||.-|||||+|.-.+-..+-. .- .|.-.+|+-. . .|...+ -+.-+-++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 346999999999999999999988765421 10 1111222210 0 000000 01111111
Q ss_pred hhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEe
Q psy5440 634 ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713 (1036)
Q Consensus 634 Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i 713 (1036)
.. ..-++|.+||+..- +-...-+|++|...+- +.+|+++||+||.- ..|..-| +.|...+
T Consensus 190 Ia-~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P---~dLYknG-lQR~~F~ 249 (467)
T KOG2383|consen 190 IA-EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAP---EDLYKNG-LQRENFI 249 (467)
T ss_pred Hh-hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCCh---HHHhhcc-hhhhhhh
Confidence 11 12379999998643 1223356777776663 45999999999853 2333222 3333333
Q ss_pred cCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcC-CC--CCHH-HHHHHHHHHH
Q psy5440 714 PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALT-PG--FTGA-DIANVCNEAA 765 (1036)
Q Consensus 714 ~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T-~G--~Sga-DL~~LvneAa 765 (1036)
| -..+|+.++.-+. ++...+.+..+... .+ |.+. |+..++++--
T Consensus 250 P------fI~~L~~rc~vi~--ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQ--LDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEe--cCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2 3466777765333 33333333222111 11 2333 7777777644
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.40 E-value=0.0028 Score=65.66 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=31.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+-++|+|+||+|||++|++++.+++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 45899999999999999999999988888776555543
No 415
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.40 E-value=0.01 Score=68.34 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=64.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechh------hhhh--hccCch--------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSE------FLEM--FVGVGP-------------- 624 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se------~~e~--~vG~~~-------------- 624 (1036)
+....-..|+||||||||+||..+|-.+ +..+++|+... +... ..|...
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3333446899999999999999887432 24667777543 1110 011110
Q ss_pred -h----HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 625 -S----RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 625 -~----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
. .+..+-.......+.+|+||-|-++.+..-.+ .+...++.+.+++++..|..+....++.||.+.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1 11112122334567899999999987542111 112234445677777766655555666666653
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.39 E-value=0.029 Score=58.80 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCC-------------CeEEEechhhhhhhc----------cC--chhHHHHHHHHhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANV-------------PFITVSGSEFLEMFV----------GV--GPSRVRDMFSMAR 635 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagv-------------pfi~Is~se~~e~~v----------G~--~~~~vr~lF~~Ar 635 (1036)
-+.|.||.|+|||||.++++...|- ++.++.-.++++.+- .. +..+-|-.+..|-
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral 102 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASEL 102 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHH
Confidence 4789999999999999999743321 122222111222110 00 1123344455555
Q ss_pred cCC--CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEe
Q psy5440 636 KHA--PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713 (1036)
Q Consensus 636 ~~a--P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i 713 (1036)
... |.|+++||--.- -+....+.+.+++..+. . .+..||.+|+.++. .+ ..|+.+.+
T Consensus 103 ~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~d~i~~l 161 (176)
T cd03238 103 FSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SADWIIDF 161 (176)
T ss_pred hhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hCCEEEEE
Confidence 667 899999997432 23333444555554442 2 34566667776542 23 46777776
Q ss_pred c
Q psy5440 714 P 714 (1036)
Q Consensus 714 ~ 714 (1036)
.
T Consensus 162 ~ 162 (176)
T cd03238 162 G 162 (176)
T ss_pred C
Confidence 4
No 417
>PRK13764 ATPase; Provisional
Probab=96.38 E-value=0.0057 Score=74.99 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=42.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEe-chhhh-----hhhccCchhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVS-GSEFL-----EMFVGVGPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is-~se~~-----e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
.+++|++||||+||||+++|++..+. ..+.++. ..++. ..+... ......+...+-+..|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 46899999999999999999998774 2232331 11221 111100 0112233334456789999999984
No 418
>PRK06217 hypothetical protein; Validated
Probab=96.36 E-value=0.0031 Score=65.91 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=28.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
-|+|.|+||+||||+|++++..+++|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 419
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.35 E-value=0.0091 Score=66.01 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=49.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHH------hcCCCeEEEechhhhhhhccCchhHHHHHHHH-------h-------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAG------EANVPFITVSGSEFLEMFVGVGPSRVRDMFSM-------A------- 634 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~------eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~-------A------- 634 (1036)
.++....+||.||.|.||+.||+.|-. .+..+|+.+||..+... ..+..+|.. |
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd------~amsalfghvkgaftga~~~r~gl 277 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD------TAMSALFGHVKGAFTGARESREGL 277 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc------hHHHHHHhhhccccccchhhhhhh
Confidence 445555699999999999999999864 44679999999876431 112222221 1
Q ss_pred -hcCCCeEEEEcCchhhh
Q psy5440 635 -RKHAPCILFIDEIDAVG 651 (1036)
Q Consensus 635 -r~~aP~ILfIDEIDaL~ 651 (1036)
+.....+||+|||..++
T Consensus 278 lrsadggmlfldeigelg 295 (531)
T COG4650 278 LRSADGGMLFLDEIGELG 295 (531)
T ss_pred hccCCCceEehHhhhhcC
Confidence 12234699999999885
No 420
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.35 E-value=0.003 Score=62.46 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=28.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
|++.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998775
No 421
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.35 E-value=0.0092 Score=63.66 Aligned_cols=124 Identities=24% Similarity=0.361 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHh
Q psy5440 555 KVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMA 634 (1036)
Q Consensus 555 K~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~A 634 (1036)
+..|..+|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+.... ... +.....
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~k----d~~~~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDK----DFLEQL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCc----HHHHHH
Confidence 45556666655444 4555667899999999999999999666 221111110 001 111122
Q ss_pred hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh-hcCcC---------CCCeEEEEecCCCccc-cHHhhC
Q psy5440 635 RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM-DGFNT---------TTNVVVLAATNRVDVL-DKALLR 703 (1036)
Q Consensus 635 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em-Dg~~~---------~~~ViVIaaTN~pd~L-DpALlR 703 (1036)
..+ -|+.|||++.+.++ ....+..++..- +.+.. +...++|||||..+.| |+.=-|
T Consensus 94 ~~~--~iveldEl~~~~k~-----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcchh-----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 222 38999999988521 123455555432 22211 2357899999998754 444445
Q ss_pred CCCcceEEEec
Q psy5440 704 PGRFDRQIFVP 714 (1036)
Q Consensus 704 pGRFdr~I~i~ 714 (1036)
|| ..|.+.
T Consensus 161 --Rf-~~v~v~ 168 (198)
T PF05272_consen 161 --RF-WPVEVS 168 (198)
T ss_pred --EE-EEEEEc
Confidence 67 445553
No 422
>PLN02674 adenylate kinase
Probab=96.34 E-value=0.019 Score=63.15 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=31.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+..++|.||||+||||+|+.+|...+++. ++..+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHH
Confidence 3456699999999999999999999998654 55555554
No 423
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.33 E-value=0.023 Score=60.90 Aligned_cols=33 Identities=39% Similarity=0.669 Sum_probs=27.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|+++||||+|||++|+.+|...+++.+. ..+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 8999999999999999999999876655 44444
No 424
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.32 E-value=0.02 Score=61.62 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=28.5
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
|......++|+||||+|||+|+..++.+. +-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45555668999999999999999876432 556666664
No 425
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.32 E-value=0.0031 Score=65.66 Aligned_cols=34 Identities=38% Similarity=0.654 Sum_probs=28.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
|+|+||||+|||++|+.||...+++++ +..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999887654 4455543
No 426
>PRK14531 adenylate kinase; Provisional
Probab=96.31 E-value=0.0038 Score=65.29 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=29.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
+-++++||||+|||++++.+|...|++.++ +.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 358999999999999999999999877654 44544
No 427
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.30 E-value=0.0096 Score=60.36 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=30.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 66777777665543
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.30 E-value=0.013 Score=62.09 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
.-++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3489999999999999999993
No 429
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.30 E-value=0.0079 Score=64.50 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=60.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCC
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG 660 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~ 660 (1036)
++|+||+|||||.+|-++|+..|.|++..+.-.... ..+|.+.... .+. +..+ =+|+||-..--
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~----~el-~~~~-RiyL~~r~l~~--------- 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP----SEL-KGTR-RIYLDDRPLSD--------- 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S----GGG-TT-E-EEES----GGG---------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH----HHH-cccc-eeeeccccccC---------
Confidence 689999999999999999999999999998665443 2334321111 111 1112 28888753321
Q ss_pred CChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCC---CCcceE-EEecCCChhhHHHHHHH
Q psy5440 661 GHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRP---GRFDRQ-IFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 661 ~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRp---GRFdr~-I~i~~Pd~eeR~~IL~~ 727 (1036)
+.-...+....|+..++......++|+=+-+. ..|..-..++ -.|..+ ..++.||.+.-..-.+.
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~ 137 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKR 137 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHH
Confidence 22334566777888888777755555555543 1111111111 133333 35577777655444433
No 430
>PRK08233 hypothetical protein; Provisional
Probab=96.28 E-value=0.018 Score=59.20 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC-CCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN-VPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag-vpfi~Is~ 612 (1036)
.-|.+.|+||+||||+|+.|+..++ .+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3477899999999999999999885 45555443
No 431
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.28 E-value=0.012 Score=66.94 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=31.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
...+..|+|+|+||+|||++++.+|..+|++|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 34566799999999999999999999999999943
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.27 E-value=0.0041 Score=67.82 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.|.-++|.||||+||||+|+.+|..++++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 455599999999999999999999999877654
No 433
>PTZ00035 Rad51 protein; Provisional
Probab=96.26 E-value=0.022 Score=65.63 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=64.7
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhh------hhhh--ccCch-------------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEF------LEMF--VGVGP------------- 624 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~------~e~~--vG~~~------------- 624 (1036)
|+....-+.|+||||+|||+|+..++..+ +...++++...- .... .+...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 34444457899999999999999988543 235666665431 1100 01100
Q ss_pred --h----HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 625 --S----RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 625 --~----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
. .+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 1 11112222234567899999999986532111 11223445557777776665555667777655
No 434
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.26 E-value=0.017 Score=58.19 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhhhhhc-cCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFLEMFV-GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~e~~v-G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
....+.|.||+|+|||+|++++++.... --+.++...-+.... -.+..+-+-.+..|-...|.++++||-..-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~---- 100 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNH---- 100 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC----
Confidence 3345789999999999999999997521 011111110000000 011122333345566678899999997532
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
-+......+..++.++ +..+|.+|++++
T Consensus 101 ------LD~~~~~~l~~~l~~~-------~~til~~th~~~ 128 (144)
T cd03221 101 ------LDLESIEALEEALKEY-------PGTVILVSHDRY 128 (144)
T ss_pred ------CCHHHHHHHHHHHHHc-------CCEEEEEECCHH
Confidence 1233334455555543 125666777654
No 435
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.26 E-value=0.025 Score=58.28 Aligned_cols=111 Identities=28% Similarity=0.388 Sum_probs=60.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC-----------CeEEEech-hhh-----hh----hcc--CchhHHHHHHHHhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV-----------PFITVSGS-EFL-----EM----FVG--VGPSRVRDMFSMAR 635 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv-----------pfi~Is~s-e~~-----e~----~vG--~~~~~vr~lF~~Ar 635 (1036)
..-+.|.||.|+|||+|++.+++.... .+.++.-. .+. +. ... .+..+-|-.+..|-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999996521 01111100 000 00 000 11123334455556
Q ss_pred cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEe
Q psy5440 636 KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713 (1036)
Q Consensus 636 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i 713 (1036)
...|.++++||-.+- -+....+.+.+++..+ +..+|.+|++++. .+ ..|+.+.+
T Consensus 107 ~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~~-----~~--~~d~i~~l 160 (166)
T cd03223 107 LHKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPSL-----WK--FHDRVLDL 160 (166)
T ss_pred HcCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChhH-----Hh--hCCEEEEE
Confidence 678999999997543 2233444555555543 2356666776532 22 35666655
No 436
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.25 E-value=0.031 Score=58.01 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=62.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhhh------h---hcc----------------C--chhHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFLE------M---FVG----------------V--GPSRVRD 629 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~e------~---~vG----------------~--~~~~vr~ 629 (1036)
...+.|.||+|+|||+|++++++.... --+.+++.++.. . |+. . +..+-+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 345889999999999999999996521 112233221100 0 000 0 1122333
Q ss_pred HHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcce
Q psy5440 630 MFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDR 709 (1036)
Q Consensus 630 lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr 709 (1036)
.+..|-...|.++++||--+- -+....+.+.++|..+. . +..||.+|+.++.+ . ..|+
T Consensus 108 ~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~-----~--~~d~ 165 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI-----E--HMDK 165 (178)
T ss_pred HHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH-----H--hCCE
Confidence 455555678999999997532 23334455666665552 2 34555666655433 2 3466
Q ss_pred EEEe
Q psy5440 710 QIFV 713 (1036)
Q Consensus 710 ~I~i 713 (1036)
.+.+
T Consensus 166 ~~~l 169 (178)
T cd03247 166 ILFL 169 (178)
T ss_pred EEEE
Confidence 6655
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.25 E-value=0.0036 Score=62.76 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=26.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
++|+|+||+|||++|+.++...+.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 438
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.24 E-value=0.035 Score=64.08 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=47.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEec-hhhh-------hhh------ccCchhHHHHHHHHhhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSG-SEFL-------EMF------VGVGPSRVRDMFSMARKHAPCIL 642 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~-se~~-------e~~------vG~~~~~vr~lF~~Ar~~aP~IL 642 (1036)
.+++++.|++|+|||++++++.+...- ..+.+.. .++. ... .|.+.-...+++..+-+..|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 467999999999999999999986632 2222221 1111 000 12223356788888999999999
Q ss_pred EEcCch
Q psy5440 643 FIDEID 648 (1036)
Q Consensus 643 fIDEID 648 (1036)
+|.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 439
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0044 Score=76.13 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=43.6
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
-+|+||.|++.+++.|...+. ..++|..+||+|| |||++|+++|++.+-
T Consensus 12 ktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 489999999999999988775 5678999999999 999999999998763
No 440
>PRK04195 replication factor C large subunit; Provisional
Probab=96.22 E-value=0.0053 Score=73.89 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=43.7
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+||.|.+++++.|++.+.-.. -.++++.+||||| |||++|+++|.+.+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 479999999999999999875422 1345899999999 99999999999986
No 441
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.21 E-value=0.026 Score=57.17 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=22.6
Q ss_pred ceeEEeCCCCCcHHH-HHHHHHHhcC----CCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTL-LAKATAGEAN----VPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTl-LAkAIA~eag----vpfi~Is~ 612 (1036)
+.+++.||+|||||+ ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 578999999999999 5555554432 34555544
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.21 E-value=0.019 Score=62.48 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=18.3
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q psy5440 582 AMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ 601 (1036)
.+|+||||+|||+|+..+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999885
No 443
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.18 E-value=0.021 Score=63.21 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.9
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
|.....-+|++||||||||++|..+|.+. |-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 44445558999999999999999886643 5577766643
No 444
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.012 Score=70.10 Aligned_cols=100 Identities=19% Similarity=0.356 Sum_probs=64.6
Q ss_pred ccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhcCCCeE-EEec
Q psy5440 535 LINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEANVPFI-TVSG 612 (1036)
Q Consensus 535 ~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~eagvpfi-~Is~ 612 (1036)
++.......+|+++.........+.+++.. |.| +|++||.|+|||+...++.++++-+.. .++.
T Consensus 227 il~~~~~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 227 ILDKDQVILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred EeccccccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 333344567899988888777776665532 566 578899999999999999998876544 2333
Q ss_pred hhhhhhh-ccCch--------hHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 613 SEFLEMF-VGVGP--------SRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 613 se~~e~~-vG~~~--------~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
.|-++.. .|... -.....++..-+..|.||+|.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 3333321 01000 012234445567889999999994
No 445
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.021 Score=57.91 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=59.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCC--eEEEechhhhh-------hhcc-----CchhHHHHHHHHhhcCCCeEEEEc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVP--FITVSGSEFLE-------MFVG-----VGPSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvp--fi~Is~se~~e-------~~vG-----~~~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
.-+.|.||+|+|||+|++++++..... -+++++..... ..++ .+..+-+-.+..+-...|.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 458899999999999999999976421 22333322111 0011 111233334555556678999999
Q ss_pred CchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 646 EIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 646 EIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
|...=. +......+..++.++- .. +..+|.+|+..+.+
T Consensus 106 Ep~~~l----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 106 EPTSGL----------DPASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred CCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 985432 2233445555555543 22 34566777765543
No 446
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.0083 Score=62.87 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=55.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhh--hhhhc-cCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEF--LEMFV-GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~--~e~~v-G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r 654 (1036)
.-+.|.||.|+|||||++.+++.... --+.+++..+ ..... -.+..+-|-.+..|-...|.++++||--.-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~---- 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY---- 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc----
Confidence 34789999999999999999986521 1122222111 00000 111223344455566678999999997432
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
-+....+.+..++.++. ...+..||.+|+..+
T Consensus 102 ------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 102 ------LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred ------CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 12333344444444432 223245566666544
No 447
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.15 E-value=0.02 Score=66.10 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechh------hhhh--hccCc---------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSE------FLEM--FVGVG--------------- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se------~~e~--~vG~~--------------- 623 (1036)
.....-++++|+||+|||+||..+|-.+ +.+.++++..+ +.+. ..+..
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 3334447899999999999999887432 23677777654 1111 00110
Q ss_pred hhHHHHHH----HHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 624 PSRVRDMF----SMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 624 ~~~vr~lF----~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
...+..++ .......+.+|+||-|-++.+..-.+. +....+...+.+++..|..+....++.||.+..
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01111122 223445688999999999875321111 112234455777877777666667777777644
No 448
>PRK14530 adenylate kinase; Provisional
Probab=96.14 E-value=0.0046 Score=66.25 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=28.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.|+|.||||+||||+|+.||..++++++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 489999999999999999999998776644 44443
No 449
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.021 Score=64.20 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc----C-CCeEEEechh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA----N-VPFITVSGSE 614 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea----g-vpfi~Is~se 614 (1036)
.++.++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35678999999999999999998755 3 5566666544
No 450
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.14 E-value=0.0072 Score=70.90 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=43.7
Q ss_pred ccccchHHHHHHHHHHHh-cCCchhHHhcC-CCCCceeEEecC---ChhhHHHHHHhhhccceeeeeee
Q psy5440 144 DVAGCEEAKVEIMEFVNF-LKNPQQYIDLG-AKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLHN 207 (1036)
Q Consensus 144 DVaG~~eak~el~e~v~~-Lk~P~~~~~lG-~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~~ 207 (1036)
-|.|+++||..|...+.- .+.......++ --.|++|||+|| |||++|++||+.++ ..|+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~--~~fi~vd 79 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVE 79 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEee
Confidence 389999999999877663 12111111122 236799999999 99999999999998 4444433
No 451
>PRK04040 adenylate kinase; Provisional
Probab=96.13 E-value=0.027 Score=59.56 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=25.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc--CCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA--NVPFI 608 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea--gvpfi 608 (1036)
|+-++++|+||+|||++++.++.++ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5668999999999999999999998 55553
No 452
>PRK13808 adenylate kinase; Provisional
Probab=96.12 E-value=0.04 Score=63.19 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|+|+||||+|||++++.||..++++.+ +..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 899999999999999999999987554 445554
No 453
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.11 E-value=0.0043 Score=63.19 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=26.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
++|+||||+|||++|+++++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986664 44444
No 454
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.11 E-value=0.017 Score=70.56 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=22.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++...+|+.||+|||||+|.||||+-.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344459999999999999999999843
No 455
>PRK04328 hypothetical protein; Provisional
Probab=96.11 E-value=0.04 Score=60.67 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=28.6
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHh---cCCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGE---ANVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~e---agvpfi~Is~ 612 (1036)
|.+....+|++||||||||+||..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4444556899999999999999887653 3667777765
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.11 E-value=0.02 Score=69.05 Aligned_cols=77 Identities=25% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh------ccC----------------------ch
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF------VGV----------------------GP 624 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~------vG~----------------------~~ 624 (1036)
......+|+.||||||||+|+-.++.+. |-+.++++..+-.+.+ .|. ..
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 4444458999999999999999988755 5677888765432211 111 02
Q ss_pred hHHHHHHHHhhcCCCeEEEEcCchhhhh
Q psy5440 625 SRVRDMFSMARKHAPCILFIDEIDAVGR 652 (1036)
Q Consensus 625 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~ 652 (1036)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3455566666777889999999998853
No 457
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.11 E-value=0.019 Score=65.51 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=65.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CCeEEEechhhhh------hh--ccCch-------------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VPFITVSGSEFLE------MF--VGVGP------------- 624 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~se~~e------~~--vG~~~------------- 624 (1036)
|.....-+.++||||+|||+|+..+|..+. ...++++..+-+. .. .+...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 344445578999999999999999886321 2567777654211 00 01111
Q ss_pred --h----HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 625 --S----RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 625 --~----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
. .+..+........+.+|+||-|-++.+..-.+. +....+...+.+++..|..+....++.||.+..
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 1 111222223345678999999999865321111 111123344667776666655566777776643
No 458
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.10 E-value=0.067 Score=62.88 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.0
Q ss_pred ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l 732 (1036)
..|..+| |.|.-+.|.+.-.+.+.-++.+..+|...
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 3566677 44766889999999999999998888753
No 459
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.0061 Score=70.73 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=41.6
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
-+|+||.|++++++.|+..+. ..++|..+||+|| |||++|+++|.+..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 589999999999998876653 3468889999999 99999999999765
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.08 E-value=0.06 Score=59.16 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=74.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCC---CeEEEech--hhhhhh-----ccC--chh----H-------HHHHHHHh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANV---PFITVSGS--EFLEMF-----VGV--GPS----R-------VRDMFSMA 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagv---pfi~Is~s--e~~e~~-----vG~--~~~----~-------vr~lF~~A 634 (1036)
.|-.+++.|++|||||++++.+.....- +++.+... .....| +.. ... . +.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556899999999999999998876532 22222211 101111 100 000 1 11111111
Q ss_pred hc---CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEE
Q psy5440 635 RK---HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQI 711 (1036)
Q Consensus 635 r~---~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I 711 (1036)
.. ..+++|+||++-. .....+.+.+++.. ...-++-+|..+...-.|++.++. -.+..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 3368999999731 01123455666542 345578888888888999999876 567666
Q ss_pred EecCCChhhHHHHHHHh
Q psy5440 712 FVPAPDIKGRASIFKVH 728 (1036)
Q Consensus 712 ~i~~Pd~eeR~~IL~~~ 728 (1036)
.+. -+..++..|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 564 4555555555544
No 461
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.07 E-value=0.014 Score=67.93 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=45.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEech-hhh-----------hhhccCchhHHHHHHHHhhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGS-EFL-----------EMFVGVGPSRVRDMFSMARKHAPCILF 643 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~s-e~~-----------e~~vG~~~~~vr~lF~~Ar~~aP~ILf 643 (1036)
.+|++||+|+||||+++++++... ..++++.-. ++. ..-+|.......+....+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 479999999999999999988762 345554311 211 011222222345666777788999999
Q ss_pred EcCch
Q psy5440 644 IDEID 648 (1036)
Q Consensus 644 IDEID 648 (1036)
+.|+.
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 462
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.05 E-value=0.033 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999753
No 463
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.04 E-value=0.015 Score=67.09 Aligned_cols=23 Identities=48% Similarity=0.564 Sum_probs=21.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 464
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.0059 Score=75.56 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=43.3
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
.+|+||.|++++++.|+..+.- .++|.++||+|| |||++|+++|++..-
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4799999999999999887662 478999999999 999999999998653
No 465
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.04 E-value=0.0061 Score=62.56 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=28.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+.++|+|++|+|||++++.+|..++.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3589999999999999999999999998754
No 466
>PRK06547 hypothetical protein; Provisional
Probab=96.04 E-value=0.0066 Score=63.31 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
..+.-|+++|++|+|||++|+.++...+++++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34667899999999999999999999988877543
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.03 E-value=0.014 Score=51.53 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc-CCCeEEEec
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA-NVPFITVSG 612 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is~ 612 (1036)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 5789999999999999999985 344444443
No 468
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.02 E-value=0.036 Score=71.78 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=97.4
Q ss_pred CCCceeEEeCCCCCcHHHH-HHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcC--------------CCeE
Q psy5440 577 KIPKGAMLTGPPGTGKTLL-AKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKH--------------APCI 641 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlL-AkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~--------------aP~I 641 (1036)
..-++++++||||+|||+| +-++-.+.-..++.+|-+.-. .++..++-+-...... .--|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 4457999999999999996 457777887888888755321 1222232222211110 0149
Q ss_pred EEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC--------CCCeEEEEecCCCccc-----cHHhhCCCCcc
Q psy5440 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--------TTNVVVLAATNRVDVL-----DKALLRPGRFD 708 (1036)
Q Consensus 642 LfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--------~~~ViVIaaTN~pd~L-----DpALlRpGRFd 708 (1036)
||.|||. +-..+.-. .....-.+.+|+ +-.||.. -.+++|.+|||.+... ...++|. .
T Consensus 1567 LFcDeIn-Lp~~~~y~----~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~---~ 1637 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYY----PPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK---P 1637 (3164)
T ss_pred EEeeccC-CccccccC----CCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC---c
Confidence 9999998 42221110 001011122333 3344433 2579999999987632 2344441 2
Q ss_pred eEEEecCCChhhHHHHHHHhcCCCCCCC------Chh------hHH-------HHHhhcCCCCCHHHHHHHHHH
Q psy5440 709 RQIFVPAPDIKGRASIFKVHLKPLKTDL------DRD------DLS-------RKLAALTPGFTGADIANVCNE 763 (1036)
Q Consensus 709 r~I~i~~Pd~eeR~~IL~~~L~~l~~~l------~~~------~l~-------~~LA~~T~G~SgaDL~~Lvne 763 (1036)
..+++..|.......|.+.++.....-. ..+ .+. ....+..-||+|+||-.+++.
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~ 1711 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRA 1711 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHH
Confidence 3578889999999999987775322111 000 000 011123368999999998864
No 469
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.02 E-value=0.032 Score=59.23 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=29.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
-+.|+|++|+|||++++.++..+|++++ ++.++...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHH
Confidence 3789999999999999999998888876 55555443
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.01 E-value=0.016 Score=60.34 Aligned_cols=72 Identities=22% Similarity=0.364 Sum_probs=41.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc-------------CCCeEEEechhhh----hh---------------hcc--------
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA-------------NVPFITVSGSEFL----EM---------------FVG-------- 621 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea-------------gvpfi~Is~se~~----e~---------------~vG-------- 621 (1036)
++|+||||+|||+++..+|..+ +.++++++...-. .. +..
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 7899999999999999887644 2467777653211 10 000
Q ss_pred ---------CchhHHHHHHHHhhc-CCCeEEEEcCchhhhhc
Q psy5440 622 ---------VGPSRVRDMFSMARK-HAPCILFIDEIDAVGRK 653 (1036)
Q Consensus 622 ---------~~~~~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~ 653 (1036)
.....++.+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011234455666666 57899999999999753
No 471
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.00 E-value=0.0065 Score=63.13 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=30.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3569999999999999999999999999877653
No 472
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.00 E-value=0.0082 Score=67.76 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=43.0
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+|+||.|.+++++.|+..+. ..++|.-+||+|| |||++|+++|.+.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 3689999999999999888775 3557888888999 999999999998753
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.99 E-value=0.074 Score=60.85 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
..|.-++|+||+|+||||++..+|..+ +..+..+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 346678999999999999999999866 444554544
No 474
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.98 E-value=0.067 Score=55.79 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=27.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
|.|+|++|+|||++++.++. +|++++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHHHh
Confidence 68999999999999999998 787765 45555443
No 475
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.97 E-value=0.049 Score=64.67 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSE 614 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se 614 (1036)
++.++|+||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999988887643 34566666544
No 476
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.92 E-value=0.022 Score=68.68 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=57.6
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCce-eEEeCCCCCcHHHHHHHHHHhcC---CCeEEEec-hhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEAN---VPFITVSG-SEF 615 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkG-vLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~-se~ 615 (1036)
...+|+++.-.++..+.+.+++. .+.| +|++||+|+|||++.+++..+.+ ..++++.- .++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 44678887656655555554442 2455 68999999999999998877664 34555432 111
Q ss_pred hhh-----hccC-chhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 616 LEM-----FVGV-GPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 616 ~e~-----~vG~-~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
.-. .+.. ......+....+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 100 0110 01123445566677899999999984
No 477
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.92 E-value=0.034 Score=59.02 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=19.0
Q ss_pred eeEEeCCCCCcHHHHHHHHH
Q psy5440 581 GAMLTGPPGTGKTLLAKATA 600 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA 600 (1036)
-++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999998
No 478
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.90 E-value=0.018 Score=64.53 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
++-++|+|+|||||||+|+.++..+. .++.++..++..+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3455565555544
No 479
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.0084 Score=71.95 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=40.7
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+||.|++++++.|+..+. + .++|..+||+|| |||++|+++|.+..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~---~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALK---K--------NSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999888776543 2 348889999999 99999999999875
No 480
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.88 E-value=0.049 Score=56.07 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=27.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
++++||||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6899999999999999998765 56677777653
No 481
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.87 E-value=0.0074 Score=62.42 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
-+++.||||+||||+|+.+|.++|.+. +++.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 478999999999999999999987654 4554443
No 482
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.0082 Score=73.74 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=42.9
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
-+|+||.|++++++.|+..+. -.++|...||+|| |||++|+++|++..
T Consensus 13 qtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999988776 4468899999999 99999999999776
No 483
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.021 Score=58.98 Aligned_cols=40 Identities=33% Similarity=0.340 Sum_probs=31.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFLE 617 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~e 617 (1036)
.|.-++|+|+||+|||++|++++..+. ...+.++...+.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 456789999999999999999999875 3355666655544
No 484
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.84 E-value=0.025 Score=59.27 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
|.|+|.+|+|||++++.++...+++++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 689999999999999999998767665 55555443
No 485
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.84 E-value=0.024 Score=62.82 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred EEeCCCCCcHHHHHHHHHHhcC---------CCeEEEechh---------hhhhhccCc--------------hhHHHHH
Q psy5440 583 MLTGPPGTGKTLLAKATAGEAN---------VPFITVSGSE---------FLEMFVGVG--------------PSRVRDM 630 (1036)
Q Consensus 583 LL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~se---------~~e~~vG~~--------------~~~vr~l 630 (1036)
=|+||||+|||.||..+|-.+. ...++|+... +.+.+.... ...+..+
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~ 121 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLEL 121 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHH
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHH
Confidence 4999999999999998876543 3477877542 111111000 0111111
Q ss_pred H----HHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 631 F----SMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 631 F----~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
+ .........+|+||-|-++.+..-.+ .+...++...+..++..|..+....++.||.|..-....|
T Consensus 122 L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 122 LEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 1 22223456899999999998643211 1123456677888877777776777877776644333333
No 486
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.0086 Score=71.55 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=41.9
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
-+|+||.|++++...|+..+. ..++|..+||+|| |||++|+++|.+.+
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 479999999999999887765 3568888999999 99999999999765
No 487
>PRK14529 adenylate kinase; Provisional
Probab=95.83 E-value=0.038 Score=60.15 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=28.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.++|.||||+||||+|+.||..++.+.+ +..+++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3789999999999999999999997765 4445443
No 488
>PF13479 AAA_24: AAA domain
Probab=95.83 E-value=0.044 Score=58.92 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=38.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeE-EEechh--h--h---hhhccCchhHHHHHHHHhh--cCCCeEEEEcCch
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFI-TVSGSE--F--L---EMFVGVGPSRVRDMFSMAR--KHAPCILFIDEID 648 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi-~Is~se--~--~---e~~vG~~~~~vr~lF~~Ar--~~aP~ILfIDEID 648 (1036)
+-.+|||||||+|||++|..+ +-|++ .+.... + . ..+.=..-..+.+.+..+. ...-.+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 345899999999999999988 33332 222220 0 0 0000112344555554432 2233699999988
Q ss_pred hh
Q psy5440 649 AV 650 (1036)
Q Consensus 649 aL 650 (1036)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 65
No 489
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.82 E-value=0.0073 Score=64.48 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|+|+||||+|||++|+.+|...+++.++ ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999877655 44444
No 490
>PRK02496 adk adenylate kinase; Provisional
Probab=95.82 E-value=0.0079 Score=62.65 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
-++++||||+|||++|+.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 379999999999999999999998776543
No 491
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.024 Score=58.48 Aligned_cols=105 Identities=23% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhh--------hh--hc-------c--------CchhHHHHH
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFL--------EM--FV-------G--------VGPSRVRDM 630 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~--------e~--~v-------G--------~~~~~vr~l 630 (1036)
...-+.|.||+|+|||+|.+.+++.... --+.+++..+. .. |+ . .+..+-+-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 3345899999999999999999996521 01222221110 00 00 0 001112223
Q ss_pred HHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 631 FSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 631 F~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+..|-...|.+|++||--+- -+......+.+++..+. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 45555678999999996432 22333455555555542 2 35667777766543
No 492
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.11 Score=57.13 Aligned_cols=136 Identities=12% Similarity=0.124 Sum_probs=94.7
Q ss_pred CceeEEeCCCC-CcHHHHHHHHHHhcCC--------C-eEEEechhhhhh-hccCchhHHHHHHHHhhc----CCCeEEE
Q psy5440 579 PKGAMLTGPPG-TGKTLLAKATAGEANV--------P-FITVSGSEFLEM-FVGVGPSRVRDMFSMARK----HAPCILF 643 (1036)
Q Consensus 579 pkGvLL~GPPG-TGKTlLAkAIA~eagv--------p-fi~Is~se~~e~-~vG~~~~~vr~lF~~Ar~----~aP~ILf 643 (1036)
....|+.|..+ ++|..++.-++..+.+ | ++.+....-... -..-+-..+|++-+.+.. ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45689999998 9999998888775532 2 222221100000 001134567776665532 2346999
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHH
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRAS 723 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~ 723 (1036)
||++|.+. ....|.||..++ .++.++++|..|+.+..|.|.+++ |+ ..+.++.|+...-.+
T Consensus 95 I~~ae~mt--------------~~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELMN--------------LNAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHhC--------------HHHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 99999984 256788888888 467788999988899999999999 77 568899999888888
Q ss_pred HHHHhcCCCC
Q psy5440 724 IFKVHLKPLK 733 (1036)
Q Consensus 724 IL~~~L~~l~ 733 (1036)
.....+++..
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 8777777654
No 493
>PRK06696 uridine kinase; Validated
Probab=95.81 E-value=0.013 Score=63.19 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL 616 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~ 616 (1036)
.|.-|.+.|++|+||||||+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35668999999999999999999988 7788888877775
No 494
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.0096 Score=69.96 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=42.5
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+||.|++.+++.|+-.+. ..++|..+||||| |||++|+++|.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999998877664 4589999999999 99999999999776
No 495
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.79 E-value=0.017 Score=66.18 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=47.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCch--------hHHHH---HHHHhhcCCCeEEEEcCc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGP--------SRVRD---MFSMARKHAPCILFIDEI 647 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~--------~~vr~---lF~~Ar~~aP~ILfIDEI 647 (1036)
.+.++|.|+||+|||+|++++++..+.+++.-.+.++.....+... ..+.. ....+...+..|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT- 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-
Confidence 3468999999999999999999999999987776666554321111 01111 12333344667999995
Q ss_pred hhh
Q psy5440 648 DAV 650 (1036)
Q Consensus 648 DaL 650 (1036)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 544
No 496
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.0095 Score=71.64 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+||.|++.+++.|+..+. ..++|...||+|| |||++|+++|++..
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 489999999999998875543 3579999999999 99999999998755
No 497
>PHA00012 I assembly protein
Probab=95.78 E-value=0.038 Score=62.74 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=65.4
Q ss_pred eEEeCCCCCcHHHHHHHHH-Hhc--CCCeEEEechhhhhhh--ccCchh-----------HHHHHHHHhhc------CCC
Q psy5440 582 AMLTGPPGTGKTLLAKATA-GEA--NVPFITVSGSEFLEMF--VGVGPS-----------RVRDMFSMARK------HAP 639 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA-~ea--gvpfi~Is~se~~e~~--vG~~~~-----------~vr~lF~~Ar~------~aP 639 (1036)
-|++|-||+|||+.|-+-. ..+ |. -+..|..-..+++ +|..++ .++++....+. ...
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr-~VaTNidL~le~~p~~g~~a~~~~~iripDkP~~~dl~~~G~~n~~ydep~g 82 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC-IVATNLNLRLHHLPQVGRFAKQPRVMRIPDKPTLEDLEAIGRGNLSYDESKN 82 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC-EEEeCCccchhhccccCccccCcceEeccCCCcHHHHHhhccccccCCCCCC
Confidence 4899999999999775422 222 44 3333433223333 221110 12344332222 234
Q ss_pred eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhC
Q psy5440 640 CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLR 703 (1036)
Q Consensus 640 ~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlR 703 (1036)
+|++|||++.+.+.|..+. ...... -+.+.. ....++-||.+|..|..+|..++.
T Consensus 83 sLlVlDEaq~~fp~R~~~s----k~p~~v-ie~l~~----hRh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 83 GLLVLDECGTWFNSRSWND----KERQPV-IDWFLH----ARKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred cEEEEECcccccCCCCcCc----CCcHHH-HHHHHH----hccCCceEEEEcCCHHHHhHHHHH
Confidence 7999999999998886532 111222 232222 256688899999999999998874
No 498
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.055 Score=62.97 Aligned_cols=144 Identities=20% Similarity=0.311 Sum_probs=85.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc--CCCeEEEechhhhhhh------cc--------CchhHHHHHHHHhhcCCCeEEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA--NVPFITVSGSEFLEMF------VG--------VGPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea--gvpfi~Is~se~~e~~------vG--------~~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
-+|+-|.||.|||||.-.+|..+ ..+++++++.+-.... .| ..+.++.++...+....|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 36888999999999988887655 3389999987644321 11 23456788888899999999999
Q ss_pred cCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCe--EEEEe-cCCCccccHHhhCCCCcceEEEecCCChhhH
Q psy5440 645 DEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV--VVLAA-TNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721 (1036)
Q Consensus 645 DEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~V--iVIaa-TN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR 721 (1036)
|-|..+....-.+..+.-...++..+.|... . ...++ ++++= |-.-..--|.++- +-.|-.++|.- |...+
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~~-A---K~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~ 248 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMRL-A---KTKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSR 248 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHHH-H---HHcCCeEEEEEEEcccccccCchhee-eeeeEEEEEec-cCCCc
Confidence 9999987544333223323333344444332 2 23333 33332 3322233344443 24566666632 33445
Q ss_pred HHHHHHhcC
Q psy5440 722 ASIFKVHLK 730 (1036)
Q Consensus 722 ~~IL~~~L~ 730 (1036)
..||+.+-.
T Consensus 249 ~RiLR~vKN 257 (456)
T COG1066 249 YRILRSVKN 257 (456)
T ss_pred eeeeehhcc
Confidence 566665543
No 499
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.77 E-value=0.023 Score=58.70 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=57.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhh--------hhh--hc---------------cCchhHHHHHHHH
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEF--------LEM--FV---------------GVGPSRVRDMFSM 633 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~--------~e~--~v---------------G~~~~~vr~lF~~ 633 (1036)
-+.|.||+|+|||+|++++++.... --+.+++.++ ... |+ -.+..+-|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 4789999999999999999986521 1122222111 000 00 0111223344556
Q ss_pred hhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 634 ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 634 Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
|-...|.++++||--+- -+......+.++|..+. . .+..+|.+|++.+
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALK---A-AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHH
Confidence 66678999999997432 23334455555665543 2 2456666777554
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.0095 Score=72.09 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=42.7
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+||.|++++++.|+..+.- .++|.-+||||| |||++|+++|.+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999988762 468888999999 99999999999765
Done!