Query psy5440
Match_columns 1036
No_of_seqs 812 out of 5474
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:37:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.7E-86 5.7E-91 778.5 44.5 466 533-1001 2-476 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 3.1E-83 1.1E-87 754.7 44.1 466 522-994 9-479 (499)
3 3cf2_A TER ATPase, transitiona 100.0 1.1E-53 3.9E-58 525.0 21.7 232 539-772 470-702 (806)
4 4b4t_J 26S protease regulatory 100.0 4.1E-51 1.4E-55 467.2 26.8 253 538-792 140-393 (405)
5 4b4t_I 26S protease regulatory 100.0 5.8E-50 2E-54 459.1 25.6 253 538-792 174-427 (437)
6 4b4t_H 26S protease regulatory 100.0 1.3E-49 4.6E-54 460.0 26.5 255 539-795 202-457 (467)
7 4b4t_L 26S protease subunit RP 100.0 1.4E-48 4.7E-53 452.2 26.0 251 539-791 174-425 (437)
8 4b4t_M 26S protease regulatory 100.0 8E-49 2.7E-53 453.8 23.0 252 538-791 173-425 (434)
9 2di4_A Zinc protease, cell div 100.0 3.3E-49 1.1E-53 422.3 16.6 200 789-988 1-206 (238)
10 4b4t_K 26S protease regulatory 100.0 8E-48 2.7E-52 445.1 27.6 251 538-790 164-416 (428)
11 3cf2_A TER ATPase, transitiona 100.0 1.5E-41 5.1E-46 417.7 21.8 291 540-835 198-511 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.7E-37 5.6E-42 334.3 28.7 253 538-792 4-256 (257)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.5E-37 1.2E-41 330.4 19.9 260 541-800 1-261 (262)
14 2x8a_A Nuclear valosin-contain 100.0 8.3E-37 2.8E-41 334.7 21.8 248 540-790 4-266 (274)
15 3cf0_A Transitional endoplasmi 100.0 2.1E-36 7E-41 335.0 24.5 247 539-787 8-280 (301)
16 3h4m_A Proteasome-activating n 100.0 4.2E-35 1.4E-39 319.2 27.3 251 539-791 10-261 (285)
17 1ypw_A Transitional endoplasmi 100.0 1E-37 3.5E-42 387.7 6.9 232 539-772 470-702 (806)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.1E-34 3.8E-39 324.6 25.8 226 539-771 5-233 (322)
19 1ixz_A ATP-dependent metallopr 100.0 2.4E-34 8.1E-39 309.2 27.1 246 538-785 8-253 (254)
20 3eie_A Vacuolar protein sortin 100.0 1.6E-34 5.4E-39 322.6 22.5 227 539-772 11-239 (322)
21 1iy2_A ATP-dependent metallopr 100.0 2.7E-33 9.2E-38 305.7 27.9 255 528-785 23-277 (278)
22 2qp9_X Vacuolar protein sortin 100.0 1.3E-33 4.4E-38 320.1 25.7 226 539-771 44-271 (355)
23 2r62_A Cell division protease 100.0 1.8E-35 6.2E-40 319.7 6.6 253 537-791 2-256 (268)
24 3hu3_A Transitional endoplasmi 100.0 8.9E-33 3E-37 325.6 25.7 245 541-790 199-461 (489)
25 2zan_A Vacuolar protein sortin 100.0 2.3E-32 8E-37 318.6 23.2 226 539-771 127-355 (444)
26 3b9p_A CG5977-PA, isoform A; A 100.0 9.7E-31 3.3E-35 286.8 23.1 242 539-787 14-271 (297)
27 3d8b_A Fidgetin-like protein 1 100.0 1.8E-30 6.1E-35 294.3 26.0 245 539-790 77-336 (357)
28 3vfd_A Spastin; ATPase, microt 100.0 8.6E-30 3E-34 291.4 25.7 243 539-788 108-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 5.3E-30 1.8E-34 283.0 8.9 234 574-820 31-282 (293)
30 1ypw_A Transitional endoplasmi 99.9 8.1E-27 2.8E-31 290.1 23.2 244 540-788 198-459 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 2.4E-25 8.3E-30 260.2 1.6 205 540-763 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 5.4E-22 1.9E-26 218.0 16.9 226 544-782 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 1.6E-21 5.6E-26 219.4 18.3 255 541-824 39-364 (368)
34 3pfi_A Holliday junction ATP-d 99.8 1.1E-19 3.7E-24 202.6 23.7 213 542-787 25-253 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 1.3E-19 4.5E-24 198.1 18.0 236 547-787 16-298 (310)
36 1d2n_A N-ethylmaleimide-sensit 99.8 9.2E-19 3.1E-23 189.9 18.6 222 545-787 32-263 (272)
37 1hqc_A RUVB; extended AAA-ATPa 99.8 8.1E-19 2.8E-23 193.8 18.4 215 542-788 8-238 (324)
38 3hws_A ATP-dependent CLP prote 99.8 6.8E-19 2.3E-23 199.2 18.0 225 544-771 12-325 (363)
39 3m6a_A ATP-dependent protease 99.8 8.1E-20 2.8E-24 218.1 10.1 225 542-787 77-340 (543)
40 1g41_A Heat shock protein HSLU 99.8 4.2E-20 1.4E-24 214.5 6.6 171 544-726 12-189 (444)
41 2v1u_A Cell division control p 99.8 9.1E-18 3.1E-22 188.4 19.5 227 542-789 15-277 (387)
42 2z4s_A Chromosomal replication 99.7 1.2E-17 3.9E-22 194.7 15.2 224 540-789 99-333 (440)
43 2chg_A Replication factor C sm 99.7 1E-16 3.5E-21 164.5 20.4 202 541-786 12-224 (226)
44 2r44_A Uncharacterized protein 99.7 6E-17 2E-21 180.3 19.1 211 544-791 25-300 (331)
45 2qby_B CDC6 homolog 3, cell di 99.7 9E-17 3.1E-21 181.1 20.8 217 543-789 17-271 (384)
46 3u61_B DNA polymerase accessor 99.7 2.2E-17 7.5E-22 183.1 15.2 206 539-787 19-236 (324)
47 1l8q_A Chromosomal replication 99.7 4.2E-17 1.4E-21 181.2 17.4 198 541-767 6-214 (324)
48 1um8_A ATP-dependent CLP prote 99.7 1.1E-16 3.6E-21 181.9 19.9 234 547-783 22-360 (376)
49 3pvs_A Replication-associated 99.7 5.9E-17 2E-21 189.1 16.8 204 542-787 22-243 (447)
50 3bos_A Putative DNA replicatio 99.7 1.4E-16 4.7E-21 166.8 17.7 206 542-786 24-241 (242)
51 1njg_A DNA polymerase III subu 99.7 5.1E-16 1.7E-20 160.8 21.3 203 541-785 18-248 (250)
52 2qby_A CDC6 homolog 1, cell di 99.7 2.6E-16 9E-21 176.1 20.6 225 542-789 16-273 (386)
53 1g8p_A Magnesium-chelatase 38 99.7 2.8E-16 9.6E-21 175.0 20.6 220 540-791 18-325 (350)
54 1sxj_A Activator 1 95 kDa subu 99.7 5.4E-17 1.8E-21 192.5 13.2 224 540-787 33-273 (516)
55 1in4_A RUVB, holliday junction 99.7 1.6E-15 5.5E-20 170.1 23.7 213 543-788 22-250 (334)
56 1jbk_A CLPB protein; beta barr 99.7 5.2E-17 1.8E-21 162.9 10.1 159 542-725 18-194 (195)
57 3pxg_A Negative regulator of g 99.7 1.7E-16 6E-21 186.1 15.4 207 542-789 176-407 (468)
58 4fcw_A Chaperone protein CLPB; 99.7 3.3E-16 1.1E-20 171.9 15.9 204 546-769 17-279 (311)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 4.8E-16 1.6E-20 192.1 18.0 222 543-789 183-434 (758)
60 1sxj_D Activator 1 41 kDa subu 99.7 1.5E-15 5.2E-20 169.1 18.1 208 540-786 31-261 (353)
61 1fnn_A CDC6P, cell division co 99.6 4.7E-15 1.6E-19 166.9 21.2 221 543-789 14-275 (389)
62 3pxi_A Negative regulator of g 99.6 1.7E-15 5.7E-20 187.5 18.3 197 545-766 490-722 (758)
63 3pxi_A Negative regulator of g 99.6 2.6E-15 8.9E-20 185.8 18.5 189 542-771 176-388 (758)
64 1jr3_A DNA polymerase III subu 99.6 1.2E-14 4.2E-19 163.0 22.2 203 541-785 11-241 (373)
65 3te6_A Regulatory protein SIR3 99.6 6.3E-16 2.2E-20 172.7 11.6 159 548-731 22-213 (318)
66 2chq_A Replication factor C sm 99.6 3.2E-15 1.1E-19 163.6 17.0 207 539-785 10-223 (319)
67 1r6b_X CLPA protein; AAA+, N-t 99.6 3.1E-15 1E-19 185.0 16.9 198 546-767 458-714 (758)
68 1qvr_A CLPB protein; coiled co 99.6 2.3E-15 7.8E-20 188.7 14.7 204 542-771 166-395 (854)
69 1sxj_B Activator 1 37 kDa subu 99.6 1.3E-14 4.3E-19 159.3 18.9 202 541-786 16-229 (323)
70 2p65_A Hypothetical protein PF 99.6 1.3E-15 4.5E-20 152.8 10.1 151 543-717 19-187 (187)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.6E-15 8.9E-20 177.3 12.6 211 546-789 22-286 (500)
72 1iqp_A RFCS; clamp loader, ext 99.6 2.8E-14 9.5E-19 156.7 19.8 206 540-785 19-231 (327)
73 2bjv_A PSP operon transcriptio 99.6 3E-14 1E-18 153.6 15.6 194 543-767 3-239 (265)
74 3f9v_A Minichromosome maintena 99.5 2.3E-15 8E-20 181.5 3.8 224 546-791 295-590 (595)
75 4b4t_J 26S protease regulatory 99.5 6.9E-15 2.4E-19 168.6 7.1 71 134-206 139-213 (405)
76 1qvr_A CLPB protein; coiled co 99.5 4.6E-14 1.6E-18 176.9 14.4 203 545-769 557-820 (854)
77 4b4t_I 26S protease regulatory 99.5 1.1E-14 3.8E-19 167.5 7.6 80 125-206 163-247 (437)
78 4b4t_H 26S protease regulatory 99.5 1.3E-14 4.3E-19 168.5 7.0 70 135-206 201-274 (467)
79 1sxj_C Activator 1 40 kDa subu 99.5 2.5E-13 8.5E-18 152.1 16.9 206 541-785 20-236 (340)
80 1ojl_A Transcriptional regulat 99.5 1.9E-13 6.6E-18 151.6 15.7 190 546-767 2-234 (304)
81 3n70_A Transport activator; si 99.5 3.6E-14 1.2E-18 140.1 8.1 124 546-708 1-127 (145)
82 1w5s_A Origin recognition comp 99.5 9.5E-13 3.2E-17 149.4 20.2 230 543-789 19-294 (412)
83 1sxj_E Activator 1 40 kDa subu 99.5 3.9E-13 1.3E-17 150.2 16.6 191 540-765 8-241 (354)
84 2dhr_A FTSH; AAA+ protein, hex 99.5 3.5E-14 1.2E-18 167.6 8.1 83 117-200 6-91 (499)
85 4b4t_L 26S protease subunit RP 99.5 3E-14 1E-18 165.3 7.3 66 135-200 173-242 (437)
86 4b4t_M 26S protease regulatory 99.5 4.9E-14 1.7E-18 163.4 7.4 70 135-206 173-246 (434)
87 4b4t_K 26S protease regulatory 99.4 9.4E-14 3.2E-18 160.8 7.6 66 135-200 164-233 (428)
88 3k1j_A LON protease, ATP-depen 99.4 5.5E-13 1.9E-17 161.1 13.4 217 541-787 36-374 (604)
89 3co5_A Putative two-component 99.4 2.4E-13 8.1E-18 134.1 8.3 131 547-715 5-141 (143)
90 3cmw_A Protein RECA, recombina 99.4 5.2E-13 1.8E-17 174.8 9.9 155 539-694 1013-1218(1706)
91 1a5t_A Delta prime, HOLB; zinc 99.3 4.4E-11 1.5E-15 134.0 21.5 159 577-764 22-208 (334)
92 4akg_A Glutathione S-transfera 99.2 1.1E-10 3.6E-15 159.2 16.6 137 579-730 1267-1432(2695)
93 2gno_A DNA polymerase III, gam 99.2 2.1E-10 7.3E-15 127.4 15.3 142 550-729 1-152 (305)
94 2ce7_A Cell division protein F 99.2 2.7E-11 9.1E-16 142.3 8.2 71 130-200 2-76 (476)
95 2lna_A AFG3-like protein 2; st 99.1 2.9E-10 1E-14 106.1 10.6 83 420-502 15-97 (99)
96 3kw6_A 26S protease regulatory 99.1 1.7E-10 6E-15 102.6 8.5 75 714-790 1-75 (78)
97 1ny5_A Transcriptional regulat 99.1 6.4E-10 2.2E-14 127.4 15.0 206 545-783 136-382 (387)
98 2krk_A 26S protease regulatory 99.1 1.8E-10 6.2E-15 104.8 8.2 77 713-791 8-84 (86)
99 3vlf_B 26S protease regulatory 99.1 2.4E-10 8.2E-15 104.3 8.1 79 717-797 2-80 (88)
100 3ec2_A DNA replication protein 99.0 6E-10 2.1E-14 113.0 9.0 134 541-695 5-144 (180)
101 2x8a_A Nuclear valosin-contain 99.0 2.4E-10 8.3E-15 124.9 6.3 64 137-200 4-71 (274)
102 2w58_A DNAI, primosome compone 98.9 2.3E-09 8E-14 110.4 8.9 102 542-650 21-127 (202)
103 1lv7_A FTSH; alpha/beta domain 98.9 9.4E-10 3.2E-14 117.8 6.2 66 135-200 4-72 (257)
104 2qz4_A Paraplegin; AAA+, SPG7, 98.9 1.1E-09 3.8E-14 116.7 6.4 63 138-200 1-66 (262)
105 2lna_A AFG3-like protein 2; st 98.9 6.5E-09 2.2E-13 97.0 10.3 85 3-87 12-96 (99)
106 3cf0_A Transitional endoplasmi 98.9 1.6E-09 5.4E-14 119.6 7.2 65 136-200 8-76 (301)
107 3dzd_A Transcriptional regulat 98.9 1.8E-08 6.1E-13 114.7 15.2 133 546-709 129-285 (368)
108 3f8t_A Predicted ATPase involv 98.9 7.7E-09 2.6E-13 120.3 12.2 216 548-792 215-487 (506)
109 1iy2_A ATP-dependent metallopr 98.8 3.5E-09 1.2E-13 115.1 7.9 78 121-199 19-99 (278)
110 1xwi_A SKD1 protein; VPS4B, AA 98.8 2.8E-09 9.6E-14 119.0 6.9 62 136-198 5-70 (322)
111 2r62_A Cell division protease 98.8 2.4E-09 8.2E-14 115.1 4.8 66 135-200 3-71 (268)
112 3aji_B S6C, proteasome (prosom 98.8 7E-09 2.4E-13 93.2 6.5 74 717-792 2-75 (83)
113 3eie_A Vacuolar protein sortin 98.8 4.6E-09 1.6E-13 116.8 5.7 65 135-200 10-78 (322)
114 2vhj_A Ntpase P4, P4; non- hyd 98.7 3.7E-09 1.3E-13 117.9 4.4 118 579-701 123-242 (331)
115 1ixz_A ATP-dependent metallopr 98.7 1.2E-08 4.1E-13 109.0 7.9 66 135-200 8-76 (254)
116 2dzn_B 26S protease regulatory 98.7 5.5E-09 1.9E-13 93.9 3.3 72 719-792 1-72 (82)
117 2r2a_A Uncharacterized protein 98.7 4E-08 1.4E-12 102.7 9.4 132 578-721 4-158 (199)
118 3h4m_A Proteasome-activating n 98.7 1.8E-08 6.2E-13 109.1 7.0 66 135-200 9-78 (285)
119 2kjq_A DNAA-related protein; s 98.7 5.1E-08 1.7E-12 97.0 9.5 104 579-713 36-145 (149)
120 2fna_A Conserved hypothetical 98.7 3E-07 1E-11 101.4 16.8 187 543-762 10-251 (357)
121 2qp9_X Vacuolar protein sortin 98.7 1.6E-08 5.5E-13 114.4 6.2 64 136-200 44-111 (355)
122 2qen_A Walker-type ATPase; unk 98.6 6.3E-07 2.1E-11 98.7 18.2 192 543-762 9-247 (350)
123 2qgz_A Helicase loader, putati 98.6 6.2E-08 2.1E-12 107.6 8.9 101 542-650 120-226 (308)
124 4akg_A Glutathione S-transfera 98.6 8E-07 2.7E-11 121.8 19.7 128 579-727 645-791 (2695)
125 2zan_A Vacuolar protein sortin 98.5 7.6E-08 2.6E-12 112.1 6.7 62 135-197 126-191 (444)
126 1svm_A Large T antigen; AAA+ f 98.5 7.5E-08 2.6E-12 110.0 4.9 120 574-715 164-284 (377)
127 3hu3_A Transitional endoplasmi 98.5 1.4E-07 4.7E-12 111.4 6.9 63 138-200 199-265 (489)
128 3b9p_A CG5977-PA, isoform A; A 98.4 1.8E-07 6.2E-12 102.0 6.7 63 136-199 14-80 (297)
129 3d8b_A Fidgetin-like protein 1 98.4 2E-07 6.9E-12 105.3 6.3 62 138-200 79-144 (357)
130 3cmu_A Protein RECA, recombina 98.4 6.1E-07 2.1E-11 119.4 10.6 117 575-691 1423-1561(2050)
131 3vkg_A Dynein heavy chain, cyt 98.3 1.3E-06 4.5E-11 120.4 12.8 137 579-730 1304-1470(3245)
132 3vfd_A Spastin; ATPase, microt 98.2 7.4E-07 2.5E-11 101.6 6.3 64 136-200 108-175 (389)
133 2c9o_A RUVB-like 1; hexameric 98.1 5.9E-06 2E-10 96.4 11.2 129 639-788 296-437 (456)
134 1jr3_D DNA polymerase III, del 98.1 1E-05 3.4E-10 90.4 12.3 178 577-787 16-208 (343)
135 1tue_A Replication protein E1; 98.1 1.8E-06 6.3E-11 90.6 5.3 29 579-607 58-86 (212)
136 1ye8_A Protein THEP1, hypothet 97.9 6.6E-05 2.2E-09 76.7 13.1 28 581-608 2-29 (178)
137 1u0j_A DNA replication protein 97.8 3.1E-05 1.1E-09 84.3 8.7 27 579-605 104-130 (267)
138 3vkg_A Dynein heavy chain, cyt 97.8 7.2E-05 2.4E-09 103.6 14.0 127 580-727 605-751 (3245)
139 2cvh_A DNA repair and recombin 97.7 8.4E-05 2.9E-09 76.5 8.4 39 576-614 17-55 (220)
140 3cmw_A Protein RECA, recombina 97.6 1.8E-05 6E-10 104.6 3.0 118 574-691 1423-1565(1706)
141 1xp8_A RECA protein, recombina 97.6 0.00014 4.6E-09 82.8 9.7 117 576-692 71-209 (366)
142 3syl_A Protein CBBX; photosynt 97.6 3.5E-05 1.2E-09 84.0 4.5 60 141-200 28-94 (309)
143 1n0w_A DNA repair protein RAD5 97.6 0.00017 5.9E-09 75.4 9.4 119 576-695 21-175 (243)
144 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00012 4.1E-09 75.7 7.9 37 576-612 20-59 (235)
145 3hr8_A Protein RECA; alpha and 97.6 0.00011 3.6E-09 83.4 8.1 114 577-690 59-194 (356)
146 2zr9_A Protein RECA, recombina 97.5 7.2E-05 2.5E-09 84.5 6.5 77 576-652 58-153 (349)
147 3cmu_A Protein RECA, recombina 97.5 0.00015 5.2E-09 97.0 9.4 119 575-693 728-868 (2050)
148 2z43_A DNA repair and recombin 97.5 0.00016 5.6E-09 80.4 8.2 115 576-691 104-255 (324)
149 1g41_A Heat shock protein HSLU 97.5 0.0015 5.2E-08 76.0 16.2 96 625-726 239-346 (444)
150 2ehv_A Hypothetical protein PH 97.4 0.00061 2.1E-08 71.4 10.9 128 576-714 27-206 (251)
151 1u94_A RECA protein, recombina 97.4 0.00018 6.1E-09 81.6 7.0 116 576-691 60-197 (356)
152 4a74_A DNA repair and recombin 97.4 0.0003 1E-08 72.8 8.1 137 576-715 22-199 (231)
153 3uk6_A RUVB-like 2; hexameric 97.3 0.00021 7E-09 79.9 6.9 60 137-203 38-100 (368)
154 1v5w_A DMC1, meiotic recombina 97.3 0.0003 1E-08 79.1 8.0 116 576-692 119-272 (343)
155 1qhx_A CPT, protein (chloramph 97.3 0.00022 7.4E-09 71.3 5.3 39 579-617 3-41 (178)
156 1z6t_A APAF-1, apoptotic prote 97.2 0.0022 7.6E-08 76.4 14.2 167 544-753 122-321 (591)
157 1sxj_A Activator 1 95 kDa subu 97.1 0.00029 9.8E-09 83.5 5.6 61 138-198 34-102 (516)
158 2a5y_B CED-4; apoptosis; HET: 97.1 0.0066 2.3E-07 72.2 17.3 168 549-753 131-330 (549)
159 3u61_B DNA polymerase accessor 97.1 0.00036 1.2E-08 76.8 5.9 50 139-199 22-74 (324)
160 2orw_A Thymidine kinase; TMTK, 97.1 0.00038 1.3E-08 71.4 5.7 68 581-650 5-88 (184)
161 3sfz_A APAF-1, apoptotic pepti 97.1 0.0029 9.9E-08 81.2 15.1 171 542-753 120-321 (1249)
162 3io5_A Recombination and repai 97.1 0.00076 2.6E-08 75.2 8.4 111 581-691 30-169 (333)
163 3upu_A ATP-dependent DNA helic 97.1 0.0014 4.6E-08 76.5 10.6 101 538-650 16-140 (459)
164 2i1q_A DNA repair and recombin 97.1 0.00063 2.2E-08 75.3 7.3 115 576-691 95-256 (322)
165 3lda_A DNA repair protein RAD5 97.1 0.00091 3.1E-08 76.9 8.5 118 575-693 174-327 (400)
166 1pzn_A RAD51, DNA repair and r 97.0 0.00067 2.3E-08 76.5 7.0 120 575-695 127-287 (349)
167 2b8t_A Thymidine kinase; deoxy 97.0 0.0017 5.8E-08 68.9 9.5 69 581-650 14-101 (223)
168 2dr3_A UPF0273 protein PH0284; 96.9 0.003 1E-07 65.9 10.7 39 575-613 19-60 (247)
169 1tev_A UMP-CMP kinase; ploop, 96.9 0.0055 1.9E-07 61.4 12.2 36 579-616 3-38 (196)
170 2p5t_B PEZT; postsegregational 96.9 0.0021 7.2E-08 68.7 8.8 41 576-616 29-69 (253)
171 3trf_A Shikimate kinase, SK; a 96.9 0.00048 1.6E-08 69.3 3.6 32 579-610 5-36 (185)
172 3t15_A Ribulose bisphosphate c 96.8 0.00038 1.3E-08 76.4 2.7 30 171-200 31-63 (293)
173 3dm5_A SRP54, signal recogniti 96.8 0.011 3.8E-07 68.7 14.2 70 578-647 99-191 (443)
174 3pfi_A Holliday junction ATP-d 96.7 0.0012 4E-08 73.1 5.8 54 140-200 26-82 (338)
175 1gvn_B Zeta; postsegregational 96.7 0.0017 5.7E-08 71.2 6.9 62 552-617 10-71 (287)
176 3vaa_A Shikimate kinase, SK; s 96.7 0.00071 2.4E-08 69.4 3.7 33 578-610 24-56 (199)
177 1nlf_A Regulatory protein REPA 96.7 0.002 7E-08 69.6 7.3 25 579-603 30-54 (279)
178 2zts_A Putative uncharacterize 96.7 0.0011 3.8E-08 69.3 5.0 38 576-613 27-68 (251)
179 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.7E-08 66.9 4.4 33 577-609 3-35 (193)
180 2ius_A DNA translocase FTSK; n 96.6 0.0059 2E-07 72.3 11.1 75 639-726 297-374 (512)
181 3jvv_A Twitching mobility prot 96.6 0.0055 1.9E-07 69.4 10.1 96 581-697 125-234 (356)
182 1zp6_A Hypothetical protein AT 96.5 0.0015 5.3E-08 65.8 4.6 40 577-616 7-46 (191)
183 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.4E-08 64.8 3.8 31 581-611 3-33 (173)
184 2iut_A DNA translocase FTSK; n 96.5 0.013 4.6E-07 70.0 13.0 74 640-726 345-420 (574)
185 1cr0_A DNA primase/helicase; R 96.5 0.0032 1.1E-07 68.5 7.2 38 575-612 31-72 (296)
186 1ofh_A ATP-dependent HSL prote 96.5 0.0015 5.2E-08 70.6 4.5 58 143-200 15-77 (310)
187 2iyv_A Shikimate kinase, SK; t 96.5 0.0012 4.1E-08 66.4 3.4 30 580-609 3-32 (184)
188 2i3b_A HCR-ntpase, human cance 96.5 0.0065 2.2E-07 62.6 8.7 23 581-603 3-25 (189)
189 3iij_A Coilin-interacting nucl 96.4 0.0012 4.2E-08 66.2 3.1 32 579-610 11-42 (180)
190 2r6a_A DNAB helicase, replicat 96.4 0.0048 1.6E-07 71.8 8.5 38 575-612 199-240 (454)
191 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.004 1.4E-07 66.9 7.1 40 579-618 4-46 (260)
192 2cdn_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 66.3 4.1 34 577-610 18-51 (201)
193 1via_A Shikimate kinase; struc 96.4 0.0017 5.9E-08 64.9 3.9 29 581-609 6-34 (175)
194 1kag_A SKI, shikimate kinase I 96.4 0.0018 6.3E-08 64.1 4.1 36 579-616 4-39 (173)
195 1y63_A LMAJ004144AAA protein; 96.4 0.0015 5E-08 66.3 3.4 32 579-610 10-42 (184)
196 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0019 6.6E-08 70.5 4.6 54 140-200 9-65 (324)
197 2r8r_A Sensor protein; KDPD, P 96.4 0.016 5.5E-07 61.6 11.3 33 580-612 7-42 (228)
198 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.8E-08 64.4 3.4 31 580-610 8-38 (168)
199 1um8_A ATP-dependent CLP prote 96.3 0.0032 1.1E-07 71.0 5.9 58 143-200 21-99 (376)
200 3e1s_A Exodeoxyribonuclease V, 96.3 0.0046 1.6E-07 74.3 7.5 96 580-692 205-316 (574)
201 3crm_A TRNA delta(2)-isopenten 96.3 0.0037 1.3E-07 69.9 5.9 36 579-614 5-40 (323)
202 1ly1_A Polynucleotide kinase; 96.3 0.002 6.9E-08 63.9 3.3 32 579-612 2-34 (181)
203 3hws_A ATP-dependent CLP prote 96.2 0.0045 1.5E-07 69.5 6.5 56 144-199 16-77 (363)
204 1qf9_A UMP/CMP kinase, protein 96.2 0.0026 8.9E-08 63.7 4.0 33 578-610 5-37 (194)
205 2ze6_A Isopentenyl transferase 96.2 0.0024 8.1E-08 68.6 3.9 32 581-612 3-34 (253)
206 3lw7_A Adenylate kinase relate 96.2 0.0019 6.5E-08 63.2 2.9 29 581-610 3-31 (179)
207 3bh0_A DNAB-like replicative h 96.2 0.0096 3.3E-07 65.9 8.9 38 575-612 64-104 (315)
208 2q6t_A DNAB replication FORK h 96.2 0.0075 2.6E-07 70.0 8.2 38 575-612 196-237 (444)
209 3t61_A Gluconokinase; PSI-biol 96.2 0.0034 1.2E-07 64.2 4.7 31 579-609 18-48 (202)
210 2fz4_A DNA repair protein RAD2 96.2 0.013 4.4E-07 62.1 9.3 33 581-613 110-142 (237)
211 2vli_A Antibiotic resistance p 96.1 0.0024 8.1E-08 63.8 3.2 30 579-608 5-34 (183)
212 2c95_A Adenylate kinase 1; tra 96.1 0.0023 7.8E-08 64.6 3.1 32 579-610 9-40 (196)
213 1e6c_A Shikimate kinase; phosp 96.1 0.0033 1.1E-07 62.2 4.2 30 580-609 3-32 (173)
214 2pez_A Bifunctional 3'-phospho 96.1 0.0041 1.4E-07 62.3 4.8 37 579-615 5-44 (179)
215 2p65_A Hypothetical protein PF 96.1 0.0064 2.2E-07 60.0 6.1 48 140-199 19-69 (187)
216 1aky_A Adenylate kinase; ATP:A 96.1 0.0034 1.2E-07 65.2 4.3 32 579-610 4-35 (220)
217 3dl0_A Adenylate kinase; phosp 96.1 0.0026 9E-08 65.7 3.3 29 582-610 3-31 (216)
218 1zd8_A GTP:AMP phosphotransfer 96.1 0.0024 8.1E-08 66.8 2.9 33 578-610 6-38 (227)
219 2bjv_A PSP operon transcriptio 96.1 0.005 1.7E-07 65.7 5.4 51 140-200 3-56 (265)
220 2bwj_A Adenylate kinase 5; pho 96.1 0.0024 8.4E-08 64.5 2.9 36 579-616 12-47 (199)
221 2eyu_A Twitching motility prot 96.0 0.0038 1.3E-07 67.6 4.4 67 580-647 26-107 (261)
222 3cm0_A Adenylate kinase; ATP-b 96.0 0.0031 1.1E-07 63.3 3.5 30 580-609 5-34 (186)
223 3fb4_A Adenylate kinase; psych 96.0 0.0029 9.9E-08 65.3 3.2 29 582-610 3-31 (216)
224 1jbk_A CLPB protein; beta barr 96.0 0.0059 2E-07 60.1 5.3 49 139-199 18-69 (195)
225 4gp7_A Metallophosphoesterase; 96.0 0.0028 9.7E-08 63.6 2.9 21 579-599 9-29 (171)
226 1ukz_A Uridylate kinase; trans 96.0 0.0032 1.1E-07 64.3 3.4 33 578-610 14-46 (203)
227 1kht_A Adenylate kinase; phosp 96.0 0.0034 1.2E-07 62.9 3.4 25 580-604 4-28 (192)
228 2pt5_A Shikimate kinase, SK; a 96.0 0.0033 1.1E-07 62.0 3.3 29 581-609 2-30 (168)
229 2ga8_A Hypothetical 39.9 kDa p 96.0 0.002 6.7E-08 73.0 1.7 54 549-610 2-55 (359)
230 3tlx_A Adenylate kinase 2; str 96.0 0.0032 1.1E-07 67.1 3.3 37 578-616 28-64 (243)
231 3be4_A Adenylate kinase; malar 95.9 0.0035 1.2E-07 65.2 3.4 32 579-610 5-36 (217)
232 2ewv_A Twitching motility prot 95.9 0.0087 3E-07 68.0 7.0 72 576-647 133-218 (372)
233 1ak2_A Adenylate kinase isoenz 95.9 0.0047 1.6E-07 64.9 4.4 32 579-610 16-47 (233)
234 3umf_A Adenylate kinase; rossm 95.9 0.0041 1.4E-07 65.7 3.9 40 576-617 26-65 (217)
235 1njg_A DNA polymerase III subu 95.9 0.0076 2.6E-07 61.4 5.8 50 139-199 19-71 (250)
236 1vma_A Cell division protein F 95.9 0.018 6.2E-07 63.8 9.1 95 554-648 79-196 (306)
237 1g5t_A COB(I)alamin adenosyltr 95.8 0.026 8.8E-07 58.7 9.4 115 581-713 30-177 (196)
238 1zak_A Adenylate kinase; ATP:A 95.8 0.0038 1.3E-07 64.9 3.1 37 578-616 4-40 (222)
239 1knq_A Gluconate kinase; ALFA/ 95.8 0.006 2.1E-07 60.7 4.2 34 580-615 9-42 (175)
240 4eun_A Thermoresistant glucoki 95.8 0.006 2.1E-07 62.5 4.3 36 578-615 28-63 (200)
241 1s96_A Guanylate kinase, GMP k 95.7 0.02 6.9E-07 60.2 8.3 25 580-604 17-41 (219)
242 3kl4_A SRP54, signal recogniti 95.7 0.025 8.7E-07 65.6 9.9 71 578-648 96-189 (433)
243 2px0_A Flagellar biosynthesis 95.7 0.039 1.3E-06 60.7 10.7 60 552-613 79-143 (296)
244 1nks_A Adenylate kinase; therm 95.7 0.0054 1.9E-07 61.4 3.5 35 581-615 3-40 (194)
245 1jjv_A Dephospho-COA kinase; P 95.7 0.012 4E-07 60.3 6.1 34 580-616 3-36 (206)
246 1g8p_A Magnesium-chelatase 38 95.7 0.0083 2.8E-07 66.1 5.2 52 137-200 18-72 (350)
247 2pbr_A DTMP kinase, thymidylat 95.6 0.0079 2.7E-07 60.3 4.6 31 581-611 2-35 (195)
248 1d2n_A N-ethylmaleimide-sensit 95.6 0.012 4.2E-07 63.0 6.2 53 142-200 32-91 (272)
249 1vt4_I APAF-1 related killer D 95.6 0.026 8.8E-07 71.8 9.7 43 549-602 131-173 (1221)
250 3sr0_A Adenylate kinase; phosp 95.5 0.007 2.4E-07 63.3 3.8 33 582-616 3-35 (206)
251 1iqp_A RFCS; clamp loader, ext 95.5 0.0093 3.2E-07 64.8 4.9 49 138-198 20-71 (327)
252 1sxj_D Activator 1 41 kDa subu 95.5 0.0067 2.3E-07 66.9 3.8 49 138-198 32-83 (353)
253 2v54_A DTMP kinase, thymidylat 95.5 0.0091 3.1E-07 60.6 4.5 33 579-611 4-37 (204)
254 3uie_A Adenylyl-sulfate kinase 95.5 0.01 3.5E-07 60.8 4.8 39 577-615 23-64 (200)
255 2chg_A Replication factor C sm 95.5 0.016 5.4E-07 58.5 6.1 49 138-198 12-63 (226)
256 1cke_A CK, MSSA, protein (cyti 95.5 0.0083 2.8E-07 62.1 4.2 30 580-609 6-35 (227)
257 3ec2_A DNA replication protein 95.5 0.012 4E-07 59.1 5.1 54 139-198 6-63 (180)
258 1e4v_A Adenylate kinase; trans 95.5 0.0076 2.6E-07 62.3 3.8 30 581-610 2-31 (214)
259 2w58_A DNAI, primosome compone 95.5 0.0089 3.1E-07 60.9 4.2 56 139-199 21-80 (202)
260 2cbz_A Multidrug resistance-as 95.4 0.041 1.4E-06 58.5 9.5 24 580-603 32-55 (237)
261 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.00065 2.2E-08 76.0 -4.7 35 171-206 117-156 (331)
262 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0066 2.3E-07 67.9 3.4 69 580-648 172-250 (330)
263 1jr3_A DNA polymerase III subu 95.4 0.012 4.1E-07 65.3 5.2 48 140-198 13-63 (373)
264 2jaq_A Deoxyguanosine kinase; 95.4 0.0084 2.9E-07 60.6 3.6 29 581-609 2-30 (205)
265 2bbw_A Adenylate kinase 4, AK4 95.3 0.01 3.6E-07 62.7 4.4 31 579-609 27-57 (246)
266 2if2_A Dephospho-COA kinase; a 95.3 0.0064 2.2E-07 62.1 2.6 34 581-617 3-36 (204)
267 1sxj_C Activator 1 40 kDa subu 95.3 0.015 5.2E-07 64.5 5.8 47 140-198 22-71 (340)
268 2z0h_A DTMP kinase, thymidylat 95.3 0.011 3.9E-07 59.4 4.5 30 582-611 3-35 (197)
269 2xb4_A Adenylate kinase; ATP-b 95.3 0.0098 3.4E-07 62.2 3.8 34 581-616 2-35 (223)
270 3n70_A Transport activator; si 95.2 0.016 5.4E-07 56.4 5.0 48 143-200 1-51 (145)
271 3ake_A Cytidylate kinase; CMP 95.2 0.013 4.5E-07 59.5 4.6 30 581-610 4-33 (208)
272 1tf7_A KAIC; homohexamer, hexa 95.2 0.06 2E-06 63.7 10.7 109 576-694 278-417 (525)
273 1uj2_A Uridine-cytidine kinase 95.1 0.015 5E-07 61.9 4.9 40 578-617 21-68 (252)
274 2chq_A Replication factor C sm 95.1 0.012 4E-07 63.8 4.1 49 138-198 12-63 (319)
275 3co5_A Putative two-component 95.1 0.0056 1.9E-07 59.6 1.4 45 144-198 5-52 (143)
276 1q57_A DNA primase/helicase; d 95.1 0.031 1.1E-06 65.7 8.0 39 575-613 238-280 (503)
277 1uf9_A TT1252 protein; P-loop, 95.1 0.015 5E-07 58.9 4.3 35 579-616 8-42 (203)
278 1sxj_B Activator 1 37 kDa subu 95.1 0.02 7E-07 61.9 5.7 48 139-198 17-67 (323)
279 1in4_A RUVB, holliday junction 95.0 0.019 6.5E-07 63.8 5.6 53 141-200 23-78 (334)
280 1sxj_E Activator 1 40 kDa subu 95.0 0.012 4E-07 65.2 3.9 48 139-197 10-60 (354)
281 2r44_A Uncharacterized protein 95.0 0.02 6.7E-07 63.1 5.6 46 141-200 25-73 (331)
282 3b6e_A Interferon-induced heli 95.0 0.033 1.1E-06 56.6 6.8 23 580-602 49-71 (216)
283 3bgw_A DNAB-like replicative h 95.0 0.032 1.1E-06 64.9 7.5 39 575-613 193-234 (444)
284 2qby_B CDC6 homolog 3, cell di 95.0 0.03 1E-06 62.4 7.0 52 139-198 16-70 (384)
285 2plr_A DTMP kinase, probable t 95.0 0.018 6.1E-07 58.6 4.7 31 579-609 4-36 (213)
286 3r20_A Cytidylate kinase; stru 94.9 0.016 5.3E-07 61.9 4.1 31 579-609 9-39 (233)
287 2wwf_A Thymidilate kinase, put 94.9 0.0066 2.3E-07 62.0 1.2 30 579-608 10-39 (212)
288 1ex7_A Guanylate kinase; subst 94.9 0.024 8.3E-07 58.3 5.4 24 580-603 2-25 (186)
289 3m6a_A ATP-dependent protease 94.8 0.02 6.7E-07 68.3 5.3 57 137-200 75-135 (543)
290 3a8t_A Adenylate isopentenyltr 94.8 0.013 4.3E-07 65.9 3.3 36 579-614 40-75 (339)
291 1nn5_A Similar to deoxythymidy 94.8 0.0086 2.9E-07 61.2 1.7 27 579-605 9-35 (215)
292 4fcw_A Chaperone protein CLPB; 94.8 0.026 8.8E-07 61.2 5.5 52 142-200 16-74 (311)
293 3pvs_A Replication-associated 94.7 0.011 3.6E-07 69.0 2.4 52 140-200 23-77 (447)
294 3c8u_A Fructokinase; YP_612366 94.7 0.022 7.5E-07 58.7 4.6 26 579-604 22-47 (208)
295 2grj_A Dephospho-COA kinase; T 94.7 0.013 4.5E-07 60.4 2.9 34 581-616 14-47 (192)
296 3nwj_A ATSK2; P loop, shikimat 94.6 0.017 5.9E-07 62.1 3.8 31 580-610 49-79 (250)
297 3foz_A TRNA delta(2)-isopenten 94.6 0.018 6.1E-07 64.0 3.9 38 578-615 9-46 (316)
298 2qor_A Guanylate kinase; phosp 94.6 0.024 8.1E-07 58.2 4.5 27 578-604 11-37 (204)
299 3thx_B DNA mismatch repair pro 94.6 0.085 2.9E-06 66.6 10.3 114 579-704 673-806 (918)
300 4a1f_A DNAB helicase, replicat 94.6 0.069 2.4E-06 60.0 8.6 38 575-612 42-82 (338)
301 1m7g_A Adenylylsulfate kinase; 94.6 0.021 7.1E-07 59.0 4.0 40 577-616 23-66 (211)
302 3ney_A 55 kDa erythrocyte memb 94.5 0.034 1.2E-06 57.8 5.6 27 578-604 18-44 (197)
303 3tau_A Guanylate kinase, GMP k 94.5 0.024 8.3E-07 58.5 4.4 26 579-604 8-33 (208)
304 2yvu_A Probable adenylyl-sulfa 94.5 0.03 1E-06 56.3 5.1 37 579-615 13-52 (186)
305 2h92_A Cytidylate kinase; ross 94.5 0.024 8.1E-07 58.4 4.2 32 579-610 3-34 (219)
306 1ltq_A Polynucleotide kinase; 94.5 0.019 6.3E-07 62.4 3.5 35 579-615 2-37 (301)
307 1l8q_A Chromosomal replication 94.5 0.05 1.7E-06 59.7 7.0 51 138-198 6-62 (324)
308 1xx6_A Thymidine kinase; NESG, 94.4 0.066 2.3E-06 55.3 7.4 69 580-650 9-93 (191)
309 1vht_A Dephospho-COA kinase; s 94.4 0.024 8.1E-07 58.6 4.1 30 579-609 4-33 (218)
310 3llm_A ATP-dependent RNA helic 94.4 0.15 5E-06 53.5 10.2 21 580-600 77-97 (235)
311 2qt1_A Nicotinamide riboside k 94.4 0.016 5.4E-07 59.4 2.6 30 580-609 22-52 (207)
312 1w36_D RECD, exodeoxyribonucle 94.4 0.057 1.9E-06 65.2 7.9 23 580-602 165-187 (608)
313 3iuy_A Probable ATP-dependent 94.4 0.24 8.2E-06 51.2 11.7 55 541-597 17-75 (228)
314 3zvl_A Bifunctional polynucleo 94.4 0.032 1.1E-06 64.3 5.3 37 577-615 256-292 (416)
315 2axn_A 6-phosphofructo-2-kinas 94.3 0.072 2.4E-06 63.2 8.4 40 579-618 35-77 (520)
316 2gxq_A Heat resistant RNA depe 94.3 0.15 5.2E-06 51.5 9.7 18 580-597 39-56 (207)
317 1q3t_A Cytidylate kinase; nucl 94.2 0.03 1E-06 58.9 4.4 33 577-609 14-46 (236)
318 2oap_1 GSPE-2, type II secreti 94.2 0.041 1.4E-06 65.2 6.0 69 579-647 260-342 (511)
319 2v1u_A Cell division control p 94.2 0.13 4.3E-06 57.0 9.5 53 139-199 15-70 (387)
320 1tf7_A KAIC; homohexamer, hexa 94.2 0.089 3E-06 62.2 8.7 111 578-697 38-188 (525)
321 3bos_A Putative DNA replicatio 94.1 0.032 1.1E-06 57.4 4.2 51 138-200 23-79 (242)
322 1kgd_A CASK, peripheral plasma 94.1 0.03 1E-06 56.4 3.9 26 579-604 5-30 (180)
323 4g1u_C Hemin import ATP-bindin 94.1 0.15 5.1E-06 55.2 9.6 23 581-603 39-61 (266)
324 2j41_A Guanylate kinase; GMP, 94.0 0.029 9.8E-07 56.9 3.6 25 579-603 6-30 (207)
325 4e22_A Cytidylate kinase; P-lo 94.0 0.037 1.2E-06 59.1 4.6 29 580-608 28-56 (252)
326 2qgz_A Helicase loader, putati 94.0 0.046 1.6E-06 60.3 5.5 53 140-198 121-177 (308)
327 3nh6_A ATP-binding cassette SU 94.0 0.16 5.6E-06 56.1 9.9 25 579-603 80-104 (306)
328 2f6r_A COA synthase, bifunctio 94.0 0.022 7.4E-07 62.1 2.8 35 579-616 75-109 (281)
329 2bdt_A BH3686; alpha-beta prot 93.9 0.041 1.4E-06 55.4 4.5 35 581-616 4-38 (189)
330 1p9r_A General secretion pathw 93.9 0.12 4E-06 59.7 8.9 68 581-648 169-246 (418)
331 3exa_A TRNA delta(2)-isopenten 93.9 0.031 1.1E-06 62.2 3.8 34 580-613 4-37 (322)
332 1vec_A ATP-dependent RNA helic 93.8 0.17 5.8E-06 51.2 9.0 18 580-597 41-58 (206)
333 1qde_A EIF4A, translation init 93.8 0.31 1.1E-05 50.0 11.1 53 541-595 12-67 (224)
334 3e70_C DPA, signal recognition 93.8 0.15 5.2E-06 56.9 9.3 27 577-603 127-153 (328)
335 3d3q_A TRNA delta(2)-isopenten 93.7 0.03 1E-06 63.0 3.4 32 580-611 8-39 (340)
336 1w4r_A Thymidine kinase; type 93.7 0.044 1.5E-06 56.9 4.4 69 580-650 21-103 (195)
337 1hv8_A Putative ATP-dependent 93.7 0.26 8.7E-06 53.8 10.8 67 543-611 6-81 (367)
338 1fnn_A CDC6P, cell division co 93.7 0.23 7.7E-06 55.1 10.4 98 139-247 13-121 (389)
339 2qmh_A HPR kinase/phosphorylas 93.6 0.027 9.3E-07 58.8 2.6 33 579-612 34-66 (205)
340 1rz3_A Hypothetical protein rb 93.6 0.1 3.5E-06 53.5 6.9 36 579-614 22-60 (201)
341 1t6n_A Probable ATP-dependent 93.6 0.81 2.8E-05 46.8 13.7 57 543-601 14-73 (220)
342 2qby_A CDC6 homolog 1, cell di 93.6 0.12 4.2E-06 56.9 8.0 53 138-198 15-70 (386)
343 2yhs_A FTSY, cell division pro 93.5 0.36 1.2E-05 56.9 12.0 27 577-603 291-317 (503)
344 3thx_A DNA mismatch repair pro 93.3 0.17 5.7E-06 64.1 9.5 22 580-601 663-684 (934)
345 3pxg_A Negative regulator of g 93.3 0.072 2.5E-06 62.2 5.8 48 140-199 177-227 (468)
346 3fdi_A Uncharacterized protein 93.3 0.046 1.6E-06 56.6 3.7 29 581-609 8-36 (201)
347 2v3c_C SRP54, signal recogniti 93.3 0.16 5.4E-06 58.9 8.5 36 578-613 98-136 (432)
348 2j37_W Signal recognition part 93.1 0.17 6E-06 59.7 8.7 36 577-612 99-137 (504)
349 3asz_A Uridine kinase; cytidin 93.1 0.04 1.4E-06 56.4 2.8 26 579-604 6-31 (211)
350 3tr0_A Guanylate kinase, GMP k 93.0 0.055 1.9E-06 54.8 3.8 31 580-612 8-38 (205)
351 2j9r_A Thymidine kinase; TK1, 93.0 0.15 5.2E-06 53.6 7.1 67 582-650 31-113 (214)
352 3a00_A Guanylate kinase, GMP k 93.0 0.051 1.7E-06 54.9 3.4 24 580-603 2-25 (186)
353 1ojl_A Transcriptional regulat 92.9 0.087 3E-06 57.9 5.5 48 143-200 2-52 (304)
354 2xxa_A Signal recognition part 92.9 0.24 8.1E-06 57.5 9.2 71 577-647 98-192 (433)
355 3tui_C Methionine import ATP-b 92.8 0.37 1.3E-05 54.7 10.5 23 581-603 56-78 (366)
356 3qf4_B Uncharacterized ABC tra 92.8 0.41 1.4E-05 57.6 11.5 25 579-603 381-405 (598)
357 1wb9_A DNA mismatch repair pro 92.8 0.61 2.1E-05 58.1 13.2 24 579-602 607-630 (800)
358 1odf_A YGR205W, hypothetical 3 92.7 0.067 2.3E-06 58.7 4.1 39 577-615 29-73 (290)
359 1x6v_B Bifunctional 3'-phospho 92.7 0.073 2.5E-06 64.5 4.8 38 578-615 51-91 (630)
360 2xau_A PRE-mRNA-splicing facto 92.7 0.2 6.9E-06 62.2 8.8 23 580-602 110-132 (773)
361 3b5x_A Lipid A export ATP-bind 92.6 0.33 1.1E-05 58.2 10.3 23 581-603 371-393 (582)
362 3eph_A TRNA isopentenyltransfe 92.5 0.055 1.9E-06 62.2 3.1 34 579-612 2-35 (409)
363 3fe2_A Probable ATP-dependent 92.5 0.37 1.3E-05 50.4 9.4 18 580-597 67-84 (242)
364 2pl3_A Probable ATP-dependent 92.4 0.38 1.3E-05 49.9 9.3 53 543-597 25-80 (236)
365 1zu4_A FTSY; GTPase, signal re 92.4 0.19 6.6E-06 55.8 7.3 37 576-612 102-141 (320)
366 4a82_A Cystic fibrosis transme 92.4 0.42 1.4E-05 57.2 10.8 24 580-603 368-391 (578)
367 3f9v_A Minichromosome maintena 92.3 0.018 6.3E-07 69.4 -1.1 55 147-201 265-355 (595)
368 1j8m_F SRP54, signal recogniti 92.2 0.27 9.1E-06 54.1 8.2 35 579-613 98-135 (297)
369 2gza_A Type IV secretion syste 92.2 0.091 3.1E-06 59.3 4.4 70 579-648 175-262 (361)
370 3b9q_A Chloroplast SRP recepto 92.2 0.12 4.1E-06 57.0 5.3 27 577-603 98-124 (302)
371 2zj8_A DNA helicase, putative 92.2 0.34 1.2E-05 59.3 9.9 33 579-611 39-75 (720)
372 3gmt_A Adenylate kinase; ssgci 92.1 0.069 2.4E-06 56.9 3.2 33 582-616 11-43 (230)
373 3b60_A Lipid A export ATP-bind 92.1 0.33 1.1E-05 58.1 9.4 23 581-603 371-393 (582)
374 1lvg_A Guanylate kinase, GMP k 91.9 0.079 2.7E-06 54.3 3.3 25 579-603 4-28 (198)
375 4f4c_A Multidrug resistance pr 91.9 0.49 1.7E-05 62.2 11.4 31 574-604 437-469 (1321)
376 4b3f_X DNA-binding protein smu 91.8 0.2 6.7E-06 60.8 7.1 32 582-613 208-242 (646)
377 1z6g_A Guanylate kinase; struc 91.8 0.087 3E-06 54.9 3.5 30 574-603 16-47 (218)
378 3lnc_A Guanylate kinase, GMP k 91.8 0.065 2.2E-06 55.9 2.5 24 580-603 28-52 (231)
379 1q0u_A Bstdead; DEAD protein, 91.7 0.57 1.9E-05 48.0 9.6 18 580-597 42-59 (219)
380 2oxc_A Probable ATP-dependent 91.7 0.58 2E-05 48.5 9.7 53 542-596 23-78 (230)
381 2z4s_A Chromosomal replication 91.7 0.16 5.3E-06 58.9 5.8 52 138-198 100-155 (440)
382 1c9k_A COBU, adenosylcobinamid 91.7 0.11 3.6E-06 53.4 3.8 32 582-614 2-33 (180)
383 1ls1_A Signal recognition part 91.7 0.27 9.4E-06 53.8 7.4 71 578-648 97-190 (295)
384 3oiy_A Reverse gyrase helicase 91.6 0.18 6.2E-06 56.9 6.1 20 580-599 37-56 (414)
385 1s2m_A Putative ATP-dependent 91.6 0.48 1.6E-05 52.8 9.5 57 542-600 20-79 (400)
386 1htw_A HI0065; nucleotide-bind 91.6 0.12 3.9E-06 51.7 3.9 23 581-603 35-57 (158)
387 3qf4_A ABC transporter, ATP-bi 91.5 0.49 1.7E-05 56.8 9.9 24 580-603 370-393 (587)
388 1tue_A Replication protein E1; 91.4 0.092 3.1E-06 55.1 3.1 26 175-200 55-85 (212)
389 1bif_A 6-phosphofructo-2-kinas 91.4 0.33 1.1E-05 56.5 8.2 38 579-616 39-79 (469)
390 2jeo_A Uridine-cytidine kinase 91.4 0.1 3.6E-06 55.1 3.6 26 581-606 27-52 (245)
391 1sky_E F1-ATPase, F1-ATP synth 91.4 0.21 7.2E-06 58.4 6.4 23 581-603 153-175 (473)
392 3sqw_A ATP-dependent RNA helic 91.4 0.43 1.5E-05 56.8 9.3 57 540-596 14-77 (579)
393 2og2_A Putative signal recogni 91.4 0.16 5.4E-06 57.6 5.2 52 552-603 127-181 (359)
394 1znw_A Guanylate kinase, GMP k 91.3 0.11 3.7E-06 53.4 3.5 25 580-604 21-45 (207)
395 2ffh_A Protein (FFH); SRP54, s 91.3 0.53 1.8E-05 54.4 9.6 35 578-612 97-134 (425)
396 3bor_A Human initiation factor 91.3 0.3 1E-05 51.1 6.9 55 541-597 28-85 (237)
397 3hdt_A Putative kinase; struct 91.2 0.1 3.5E-06 55.1 3.2 29 581-609 16-44 (223)
398 3pey_A ATP-dependent RNA helic 91.1 0.71 2.4E-05 50.9 10.2 21 579-599 44-64 (395)
399 1xti_A Probable ATP-dependent 91.1 1 3.4E-05 49.8 11.4 57 543-601 8-67 (391)
400 1a7j_A Phosphoribulokinase; tr 91.1 0.095 3.2E-06 57.4 2.9 37 580-616 6-45 (290)
401 1ewq_A DNA mismatch repair pro 91.1 0.44 1.5E-05 59.0 9.2 24 579-602 576-599 (765)
402 2v9p_A Replication protein E1; 91.1 0.13 4.3E-06 57.0 3.9 28 576-603 123-150 (305)
403 1gtv_A TMK, thymidylate kinase 91.0 0.052 1.8E-06 55.4 0.7 24 581-604 2-25 (214)
404 2j0s_A ATP-dependent RNA helic 91.0 0.83 2.9E-05 51.1 10.7 56 542-599 36-94 (410)
405 4eaq_A DTMP kinase, thymidylat 90.9 0.19 6.5E-06 52.9 4.9 32 579-610 26-59 (229)
406 2orv_A Thymidine kinase; TP4A 90.8 0.61 2.1E-05 49.7 8.7 90 581-693 21-125 (234)
407 1m8p_A Sulfate adenylyltransfe 90.8 0.14 4.7E-06 61.6 4.1 37 579-615 396-436 (573)
408 4aby_A DNA repair protein RECN 90.7 0.65 2.2E-05 52.6 9.5 23 581-603 62-84 (415)
409 2z0m_A 337AA long hypothetical 90.7 0.43 1.5E-05 51.4 7.7 33 580-612 32-64 (337)
410 2ged_A SR-beta, signal recogni 90.7 0.22 7.5E-06 49.5 4.9 25 579-603 48-72 (193)
411 1wp9_A ATP-dependent RNA helic 90.4 0.79 2.7E-05 51.5 9.8 33 581-613 25-61 (494)
412 3t1o_A Gliding protein MGLA; G 90.4 0.82 2.8E-05 45.0 8.9 23 581-603 16-38 (198)
413 3tqc_A Pantothenate kinase; bi 90.4 0.42 1.4E-05 53.3 7.3 28 577-604 90-117 (321)
414 3i5x_A ATP-dependent RNA helic 90.3 0.62 2.1E-05 54.8 9.3 17 579-595 111-127 (563)
415 3lxx_A GTPase IMAP family memb 90.3 0.64 2.2E-05 48.5 8.4 24 580-603 30-53 (239)
416 2p6r_A Afuhel308 helicase; pro 90.1 0.42 1.5E-05 58.3 7.8 34 579-612 40-76 (702)
417 2va8_A SSO2462, SKI2-type heli 90.0 0.73 2.5E-05 56.2 9.8 22 577-598 44-65 (715)
418 3tqf_A HPR(Ser) kinase; transf 89.9 0.17 6E-06 51.7 3.5 28 579-607 16-43 (181)
419 3j16_B RLI1P; ribosome recycli 89.9 0.53 1.8E-05 56.9 8.3 23 581-603 105-127 (608)
420 3ozx_A RNAse L inhibitor; ATP 89.8 0.72 2.5E-05 54.9 9.2 24 580-603 295-318 (538)
421 1fuu_A Yeast initiation factor 89.8 0.53 1.8E-05 52.1 7.6 56 540-597 18-76 (394)
422 3dkp_A Probable ATP-dependent 89.8 1.1 3.9E-05 46.5 9.8 17 580-596 67-83 (245)
423 1sq5_A Pantothenate kinase; P- 89.7 0.14 4.9E-06 56.2 2.9 26 579-604 80-105 (308)
424 3q72_A GTP-binding protein RAD 89.7 0.3 1E-05 47.0 4.9 21 581-601 4-24 (166)
425 3tbk_A RIG-I helicase domain; 89.7 1.5 5.2E-05 50.7 11.7 33 580-612 20-60 (555)
426 3eiq_A Eukaryotic initiation f 89.5 1.6 5.6E-05 48.5 11.4 53 543-597 40-95 (414)
427 3def_A T7I23.11 protein; chlor 89.5 0.93 3.2E-05 48.2 9.0 25 579-603 36-60 (262)
428 3ice_A Transcription terminati 89.4 0.49 1.7E-05 54.2 7.0 23 581-603 176-198 (422)
429 3nbx_X ATPase RAVA; AAA+ ATPas 89.4 0.33 1.1E-05 57.3 5.9 44 143-200 22-68 (500)
430 3ly5_A ATP-dependent RNA helic 89.4 0.87 3E-05 48.5 8.7 18 580-597 92-109 (262)
431 3fmo_B ATP-dependent RNA helic 89.4 0.73 2.5E-05 50.3 8.3 53 542-596 91-148 (300)
432 1p5z_B DCK, deoxycytidine kina 89.3 0.11 3.6E-06 55.5 1.5 29 579-607 24-53 (263)
433 3ber_A Probable ATP-dependent 89.3 0.88 3E-05 48.0 8.6 18 580-597 81-98 (249)
434 3p32_A Probable GTPase RV1496/ 89.2 0.43 1.5E-05 53.5 6.3 33 579-611 79-114 (355)
435 2ocp_A DGK, deoxyguanosine kin 89.2 0.2 6.9E-06 52.5 3.5 26 579-604 2-27 (241)
436 1np6_A Molybdopterin-guanine d 89.2 0.22 7.5E-06 50.5 3.6 25 579-603 6-30 (174)
437 3lxw_A GTPase IMAP family memb 89.1 1 3.4E-05 47.7 8.9 25 579-603 21-45 (247)
438 4f4c_A Multidrug resistance pr 88.8 0.79 2.7E-05 60.2 9.4 92 168-259 434-549 (1321)
439 1w5s_A Origin recognition comp 88.6 1.1 3.6E-05 50.2 9.1 53 140-199 19-78 (412)
440 2fwr_A DNA repair protein RAD2 88.6 0.4 1.4E-05 55.2 5.7 33 581-613 110-142 (472)
441 3aez_A Pantothenate kinase; tr 88.6 0.24 8.3E-06 54.8 3.7 25 579-603 90-114 (312)
442 1rj9_A FTSY, signal recognitio 88.5 0.25 8.5E-06 54.5 3.7 26 578-603 101-126 (304)
443 2o8b_B DNA mismatch repair pro 88.4 0.86 2.9E-05 58.3 9.0 21 580-600 790-810 (1022)
444 1u0j_A DNA replication protein 88.3 0.33 1.1E-05 52.7 4.4 21 178-198 106-129 (267)
445 1svm_A Large T antigen; AAA+ f 88.2 0.34 1.2E-05 55.2 4.7 52 146-198 129-194 (377)
446 2qm8_A GTPase/ATPase; G protei 88.2 0.69 2.4E-05 51.6 7.1 24 580-603 56-79 (337)
447 2onk_A Molybdate/tungstate ABC 88.2 0.21 7.1E-06 53.2 2.7 25 580-604 25-49 (240)
448 3tif_A Uncharacterized ABC tra 88.2 0.18 6.2E-06 53.4 2.3 24 581-604 33-56 (235)
449 1r8s_A ADP-ribosylation factor 88.2 3 0.0001 39.6 10.9 21 582-602 3-23 (164)
450 3bc1_A RAS-related protein RAB 88.1 1.6 5.4E-05 42.7 9.0 23 580-602 12-34 (195)
451 1wrb_A DJVLGB; RNA helicase, D 88.1 0.78 2.7E-05 48.1 7.1 18 580-597 61-78 (253)
452 3b85_A Phosphate starvation-in 88.0 0.2 6.7E-06 52.3 2.3 22 581-602 24-45 (208)
453 3kta_A Chromosome segregation 87.9 0.28 9.6E-06 48.8 3.4 24 581-604 28-51 (182)
454 3k1j_A LON protease, ATP-depen 87.9 0.37 1.3E-05 58.0 5.0 48 139-200 37-87 (604)
455 1gm5_A RECG; helicase, replica 87.7 1.6 5.5E-05 54.2 10.6 35 578-612 388-425 (780)
456 2pcj_A ABC transporter, lipopr 87.7 0.19 6.6E-06 52.8 2.0 24 581-604 32-55 (224)
457 1xjc_A MOBB protein homolog; s 87.6 0.31 1E-05 49.4 3.4 32 580-611 5-39 (169)
458 4a2p_A RIG-I, retinoic acid in 87.6 2 6.8E-05 49.9 10.8 33 580-612 23-63 (556)
459 2gks_A Bifunctional SAT/APS ki 87.5 0.86 3E-05 54.3 7.8 39 579-617 372-413 (546)
460 2hf9_A Probable hydrogenase ni 87.4 0.39 1.3E-05 49.2 4.2 24 580-603 39-62 (226)
461 3vkw_A Replicase large subunit 87.4 0.66 2.3E-05 53.9 6.5 24 579-602 161-184 (446)
462 3e2i_A Thymidine kinase; Zn-bi 87.4 0.6 2.1E-05 49.3 5.6 68 582-650 31-113 (219)
463 1b0u_A Histidine permease; ABC 87.4 0.22 7.4E-06 53.7 2.3 24 581-604 34-57 (262)
464 2f9l_A RAB11B, member RAS onco 87.3 0.29 1E-05 49.3 3.1 23 581-603 7-29 (199)
465 3cr8_A Sulfate adenylyltranfer 87.2 0.22 7.4E-06 59.6 2.4 38 579-616 369-410 (552)
466 1mv5_A LMRA, multidrug resista 87.1 0.22 7.5E-06 52.9 2.1 23 581-603 30-52 (243)
467 1oix_A RAS-related protein RAB 87.0 0.28 9.7E-06 49.3 2.8 23 581-603 31-53 (191)
468 2f7s_A C25KG, RAS-related prot 87.0 2.6 8.8E-05 42.6 10.0 22 581-602 27-48 (217)
469 3dz8_A RAS-related protein RAB 86.9 1.7 5.8E-05 43.1 8.5 23 581-603 25-47 (191)
470 3h1t_A Type I site-specific re 86.9 0.84 2.9E-05 54.3 7.3 43 550-602 179-221 (590)
471 4edh_A DTMP kinase, thymidylat 86.8 0.53 1.8E-05 49.1 4.8 32 580-611 7-41 (213)
472 4i1u_A Dephospho-COA kinase; s 86.8 0.32 1.1E-05 51.0 3.1 29 581-610 11-39 (210)
473 1sgw_A Putative ABC transporte 86.8 0.26 8.8E-06 51.7 2.4 24 581-604 37-60 (214)
474 2zu0_C Probable ATP-dependent 86.8 0.29 9.8E-06 52.9 2.8 23 581-603 48-70 (267)
475 1fzq_A ADP-ribosylation factor 86.8 1.2 4.2E-05 44.0 7.3 23 580-602 17-39 (181)
476 2ghi_A Transport protein; mult 86.7 0.25 8.5E-06 53.2 2.3 25 580-604 47-71 (260)
477 2dyk_A GTP-binding protein; GT 86.6 0.35 1.2E-05 46.1 3.1 23 581-603 3-25 (161)
478 2d2e_A SUFC protein; ABC-ATPas 86.6 0.3 1E-05 52.1 2.9 22 581-602 31-52 (250)
479 1g6h_A High-affinity branched- 86.6 0.23 7.7E-06 53.3 1.9 24 581-604 35-58 (257)
480 1lw7_A Transcriptional regulat 86.5 0.32 1.1E-05 54.6 3.1 27 580-606 171-197 (365)
481 2olj_A Amino acid ABC transpor 86.5 0.26 8.9E-06 53.3 2.3 24 581-604 52-75 (263)
482 2ixe_A Antigen peptide transpo 86.5 0.26 8.8E-06 53.4 2.3 25 580-604 46-70 (271)
483 3g5u_A MCG1178, multidrug resi 86.4 1.5 5.2E-05 57.5 9.8 25 580-604 417-441 (1284)
484 2bme_A RAB4A, RAS-related prot 86.3 1.3 4.3E-05 43.4 7.1 23 580-602 11-33 (186)
485 1g8f_A Sulfate adenylyltransfe 86.3 0.33 1.1E-05 57.5 3.2 27 579-605 395-421 (511)
486 1ji0_A ABC transporter; ATP bi 86.3 0.28 9.6E-06 52.1 2.4 24 581-604 34-57 (240)
487 3gfo_A Cobalt import ATP-bindi 86.2 0.28 9.6E-06 53.4 2.4 24 581-604 36-59 (275)
488 2fh5_B SR-beta, signal recogni 86.2 2.3 8E-05 42.8 9.2 24 580-603 8-31 (214)
489 2pze_A Cystic fibrosis transme 86.2 0.24 8.2E-06 52.2 1.8 25 580-604 35-59 (229)
490 3fht_A ATP-dependent RNA helic 86.1 1.5 5.2E-05 48.6 8.4 19 579-597 64-82 (412)
491 3fvq_A Fe(3+) IONS import ATP- 86.1 0.28 9.7E-06 55.5 2.4 23 581-603 32-54 (359)
492 3v9p_A DTMP kinase, thymidylat 86.0 0.46 1.6E-05 50.3 3.8 32 580-611 26-64 (227)
493 2v6i_A RNA helicase; membrane, 86.0 1.2 4E-05 51.3 7.5 32 580-611 3-38 (431)
494 3fmp_B ATP-dependent RNA helic 85.9 1.4 4.9E-05 50.7 8.3 57 543-601 92-154 (479)
495 2ff7_A Alpha-hemolysin translo 85.9 0.25 8.4E-06 52.8 1.7 24 581-604 37-60 (247)
496 1vpl_A ABC transporter, ATP-bi 85.9 0.29 1E-05 52.6 2.3 24 581-604 43-66 (256)
497 1z2a_A RAS-related protein RAB 85.9 0.39 1.3E-05 46.0 3.0 23 580-602 6-28 (168)
498 1nrj_B SR-beta, signal recogni 85.9 0.46 1.6E-05 48.3 3.7 25 579-603 12-36 (218)
499 2yz2_A Putative ABC transporte 85.8 0.29 9.9E-06 52.8 2.3 24 581-604 35-58 (266)
500 3sop_A Neuronal-specific septi 85.8 0.34 1.2E-05 52.4 2.8 23 581-603 4-26 (270)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.7e-86 Score=778.45 Aligned_cols=466 Identities=47% Similarity=0.815 Sum_probs=388.4
Q ss_pred ccccccC-CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 533 AKLINSS-DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 533 ~~~~~~~-~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
++++.+. .+.++|+||+|+++++++|.+++.+++++..|..+|.++|+|+||+||||||||+||+++|+++++||+.++
T Consensus 2 a~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 2 ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp ---CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CceeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 4566666 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 612 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
|+++.++|+|.+..+++.+|..|+..+||||||||||.++++++....+.+.+..+++++||.+||++..+.+++||++|
T Consensus 82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 99999999999999999999999999999999999999998876555556778889999999999999888899999999
Q ss_pred CCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 692 NRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 692 N~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
|+++.||++++||||||+.|.+++|+.++|.+|++.|++... +..+..+..++..|+|++|+||+++|++|++.|.++
T Consensus 162 n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998764 333344567899999999999999999999999998
Q ss_pred cCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCC-CCcceeEeccc-cc
Q psy5440 772 LHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRG-KGLGYAQYLPR-EQ 849 (1036)
Q Consensus 772 ~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg-~~lG~~~~~p~-e~ 849 (1036)
+...|+.+||..|+++++.+.+++...+++++++.+||||+|||+++|++++++++++|+|+||| .++||++++|. +.
T Consensus 240 ~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~ 319 (476)
T 2ce7_A 240 GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDK 319 (476)
T ss_dssp TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------C
T ss_pred CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccc
Confidence 88999999999999999999888888899999999999999999999999999999999999999 89999999997 57
Q ss_pred ccCCHHHHHHHHHHhcCchhhhhhhccccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCC-----cccccCC
Q psy5440 850 YLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPG-----EMVLEKP 924 (1036)
Q Consensus 850 ~~~tk~~l~~~i~~~LgGraAE~i~fg~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~-----~~~~~~~ 924 (1036)
+++||.+|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|...... ++...++
T Consensus 320 ~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (476)
T 2ce7_A 320 YLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRN 399 (476)
T ss_dssp CSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCC
T ss_pred cccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999754321 2233578
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCCCCCC-CchhhhhcCCCC
Q psy5440 925 YSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPEK-STYEEFVEGTGS 1001 (1036)
Q Consensus 925 ~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~~~~~-~~~~~~~~~~~~ 1001 (1036)
||+++++.||+||+++|++||++|++||++||+.|++||++|+++|||+++||.+|++. +++.. .+|+++++++++
T Consensus 400 ~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 476 (476)
T 2ce7_A 400 YSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE-EFEKVVEAAALEHHHHHH 476 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC--------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc-cccchhHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999988 77644 589999998864
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-83 Score=754.69 Aligned_cols=466 Identities=51% Similarity=0.828 Sum_probs=421.2
Q ss_pred CccccccccccccccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHH
Q psy5440 522 GGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
+++| ++++++++++.+. +.++|+||+|+++++.++.+++.+++++..|..+|.++|+|+||+||||||||+||++||+
T Consensus 9 ~~~~-~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 9 DSAF-SFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp ----------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCC-CcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4577 7999999999866 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC
Q psy5440 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT 681 (1036)
Q Consensus 602 eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~ 681 (1036)
+++.+|+.++++++.++++|....+++.+|+.++...|||+||||||.++..++....+.+++..+++++||.+|+++..
T Consensus 87 ~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp HTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred HhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999988899999999999998777543334567778999999999999988
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHH
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVC 761 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lv 761 (1036)
+..++||++||+|+.||++++||||||+.|.+++||.++|.+||+.|++... +..+..+..+|..++|++|+||+++|
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~--l~~dv~l~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC--CCCSSTTHHHHTTSCSCCHHHHHHHH
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999987654 44455567899999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcce
Q psy5440 762 NEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGY 841 (1036)
Q Consensus 762 neAal~A~r~~~~~It~~d~~~Aiervi~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~ 841 (1036)
++|++.|.+++...|+.+||.+|+++++.+.++++..+++++++.+||||+|||+++|+++++++|++++|+||++++||
T Consensus 245 ~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~ 324 (499)
T 2dhr_A 245 NEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGF 324 (499)
T ss_dssp HHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCS
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcc
Confidence 99999999888889999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred eEeccc--ccccCCHHHHHHHHHHhcCchhhhhhhccccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCC---
Q psy5440 842 AQYLPR--EQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQP--- 916 (1036)
Q Consensus 842 ~~~~p~--e~~~~tk~~l~~~i~~~LgGraAE~i~fg~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~--- 916 (1036)
++ |. +.|++||.+|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|.....
T Consensus 325 ~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~ 402 (499)
T 2dhr_A 325 MM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYL 402 (499)
T ss_dssp SH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSS
T ss_pred cc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCcccc
Confidence 98 65 688999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCCCCCCCchhh
Q psy5440 917 GEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPEKSTYEE 994 (1036)
Q Consensus 917 ~~~~~~~~~s~~~~~~id~ev~~ll~~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~~~~~~~~~~ 994 (1036)
|++. .++||+++++.||+||+++|++||++|++||++||+.|++||++|+++|||+++||.+|++.++..+...+.+
T Consensus 403 ~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 479 (499)
T 2dhr_A 403 GGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAPEEARE 479 (499)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCCCCC----
T ss_pred cccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCCCcchhhh
Confidence 2222 5789999999999999999999999999999999999999999999999999999999998876544443333
No 3
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-53 Score=524.99 Aligned_cols=232 Identities=41% Similarity=0.770 Sum_probs=186.3
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.++++|+||.|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.||+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45679999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|+|.+++.++.+|+.|+..+||||||||||+++++|+......+....+++++||.+||++....+|+||||||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999887554444556678999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
|+||+||||||+.|+|++||.++|.+||+.|++... +..+..+..||+.|+||||+||+++|++|++.|+|+.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~--~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 3444556789999999999999999999999999863
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-51 Score=467.24 Aligned_cols=253 Identities=42% Similarity=0.714 Sum_probs=238.4
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 356789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
++|+|.++..++.+|..|+..+||||||||||+++++|.....+++.+...++++||.+||++....+|+||||||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999999988776666667778899999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||||+||||||+.|+|++||.++|.+||+.|++... +..+..+..||+.|+||||+||+++|++|++.|+++++..|
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~v 377 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHV 377 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999766 33444567899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCc
Q psy5440 777 VMKHFEQAIERVVAGM 792 (1036)
Q Consensus 777 t~~d~~~Aiervi~gl 792 (1036)
+++||+.|+++++...
T Consensus 378 t~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 378 TQEDFELAVGKVMNKN 393 (405)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcc
Confidence 9999999999987653
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-50 Score=459.13 Aligned_cols=253 Identities=40% Similarity=0.690 Sum_probs=238.7
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++++|+||+|++++|++|.+.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 467889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
++|+|.++..++.+|..|+..+||||||||||+++.+|.....+++.+...++++||.+||++....+|+||+|||+|+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 99999999999999999999999999999999999999776666677788999999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||||+||||||+.|+|++||.++|.+||+.|++... ++.+..+..||+.|+||||+||+++|++|++.|+++.+..|
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999998765 33444567899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCc
Q psy5440 777 VMKHFEQAIERVVAGM 792 (1036)
Q Consensus 777 t~~d~~~Aiervi~gl 792 (1036)
+.+||.+|+++++.+.
T Consensus 412 t~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 412 TAEDFKQAKERVMKNK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC
Confidence 9999999999987653
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-49 Score=459.95 Aligned_cols=255 Identities=41% Similarity=0.733 Sum_probs=239.2
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.++|+|+||+|++++|++|++.|.+ |++|+.|..+|+++|+|+|||||||||||+||+|+|++++++|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 56789999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|+|.++..++.+|..|+..+||||||||||+++.+|.....+.......+++++|.+||++....+|+||+|||+|+.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 99999999999999999999999999999999999887665555667778999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
||||+||||||+.|+|++||.++|.+||+.|++.+. ++.+..+..||+.|+||||+||+++|++|++.|+++.+..|+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it 439 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 439 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccC
Confidence 999999999999999999999999999999999766 333444678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccc
Q psy5440 778 MKHFEQAIERVVAGMEKK 795 (1036)
Q Consensus 778 ~~d~~~Aiervi~gle~~ 795 (1036)
.+||..|+++++.+.++.
T Consensus 440 ~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 440 EKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 999999999999987654
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-48 Score=452.24 Aligned_cols=251 Identities=39% Similarity=0.651 Sum_probs=235.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.++++|+||+|++++|++|.+.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|+++++||+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 56789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+|+|.++..++.+|..|+..+||||||||||+++.+|.......+.+...++++||.+||++....+|+||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999887655555667788999999999999999999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
||||+||||||+.|+|++||.++|.+||+.|++... +..+..+..||+.|+||||+||+++|++|++.|+++++..|+
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK--KTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC--BCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999998765 233444678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy5440 778 MKHFEQAIERVVAG 791 (1036)
Q Consensus 778 ~~d~~~Aiervi~g 791 (1036)
.+||..|++++...
T Consensus 412 ~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 412 PDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-49 Score=453.84 Aligned_cols=252 Identities=40% Similarity=0.670 Sum_probs=235.2
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++++|+||+|++++|++|.+.|.. +++|+.|..+|+++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356889999999999999999998777 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
.+|+|.++..++.+|..|+..+||||||||||+++.+|.....++..+...++++||.+||++....+|+||||||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999998776666667778899999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~I 776 (1036)
|||||+||||||+.|+|++||.++|.+||+.|++... ++.+..+..||+.|+||||+||+++|++|++.|+++++..|
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i 410 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT--TDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSV 410 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC--BCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999998665 33344467899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy5440 777 VMKHFEQAIERVVAG 791 (1036)
Q Consensus 777 t~~d~~~Aiervi~g 791 (1036)
+.+||.+|++++...
T Consensus 411 ~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 411 KHEDFVEGISEVQAR 425 (434)
T ss_dssp CHHHHHHHHHSCSSS
T ss_pred CHHHHHHHHHHHhCC
Confidence 999999999986543
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=3.3e-49 Score=422.34 Aligned_cols=200 Identities=36% Similarity=0.590 Sum_probs=162.5
Q ss_pred HcCccccccccccccchhhhHhhhhHHHHHhhhccCCCceeeeeccCCCCcceeEeccc-ccccCCHHHHHHHHHHhcCc
Q psy5440 789 VAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPR-EQYLYSKEQLLDRMCMTLGG 867 (1036)
Q Consensus 789 i~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~~~v~kvsI~prg~~lG~~~~~p~-e~~~~tk~~l~~~i~~~LgG 867 (1036)
++|++++++.+++++|+++||||||||||+|++++++||++|||+|||.++|||+++|. +++++||++|+++|+++|||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgG 80 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGG 80 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhH
Confidence 46888888999999999999999999999999999999999999999999999999997 57899999999999999999
Q ss_pred hhhhhhhc--cccccCcchHHHHHHHHHHHHHHhcCCCCCCCcccccCCCC---CcccccCCCChHHHHHHHHHHHHHHH
Q psy5440 868 RVSEEIFF--GRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQP---GEMVLEKPYSESTAQLIDNEVRSLIS 942 (1036)
Q Consensus 868 raAE~i~f--g~~ttGa~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~---~~~~~~~~~s~~~~~~id~ev~~ll~ 942 (1036)
||||+++| |++||||+|||++||+||+.||++||||+++|+++|..++. |++...++||++|++.||.||++||+
T Consensus 81 RaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~ 160 (238)
T 2di4_A 81 RAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIIT 160 (238)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 99999999 78999999999999999999999999999999999975432 22223578999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCHHHHHHhhcCCCCCC
Q psy5440 943 NAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPE 988 (1036)
Q Consensus 943 ~ay~~a~~lL~~~r~~l~~la~~Lle~e~L~~~ei~~il~~~~~~~ 988 (1036)
+||++|++||++||+.|++||++||++|||+++||.+|++..++..
T Consensus 161 ~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~~ 206 (238)
T 2di4_A 161 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIEL 206 (238)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCCc
Confidence 9999999999999999999999999999999999999998765543
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-48 Score=445.09 Aligned_cols=251 Identities=41% Similarity=0.635 Sum_probs=235.5
Q ss_pred cCCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.+.++++|+||+|++++|++|.+.+.. +++|+.|..+|+++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 356889999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~ 696 (1036)
++|+|.++..++++|..|+..+||||||||+|+++.+|.....+++.+..+++++||.+|||+....+|+||||||+|+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999998776666667788999999999999999999999999999999
Q ss_pred ccHHhhCCCCcceEEEec-CCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy5440 697 LDKALLRPGRFDRQIFVP-APDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTT 775 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~-~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~ 775 (1036)
|||||+||||||+.|+|| +||.++|..||+.|++... +..+..+..||..|+||||+||+++|++|++.|+++++..
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~ 401 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 401 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999996 8999999999999998765 3344456789999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHc
Q psy5440 776 IVMKHFEQAIERVVA 790 (1036)
Q Consensus 776 It~~d~~~Aiervi~ 790 (1036)
|+++||++|+.+++.
T Consensus 402 i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 402 ILQSDLEEAYATQVK 416 (428)
T ss_dssp BCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHhhC
Confidence 999999999988654
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-41 Score=417.67 Aligned_cols=291 Identities=35% Similarity=0.583 Sum_probs=243.0
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.+.++|+||+|+++++++|++++.+ |++|+.|..+|+++|+|||||||||||||+||+++|++++++|+.++|+++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4679999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
|+|.++.+++.+|+.|+.++||||||||||+|+++|+... ......++++||.+||++..+.+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998876532 3445688999999999999999999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC-----
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH----- 773 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~----- 773 (1036)
++|+||||||+.|+++.||.++|.+||+.|++... +..+..+..||..|.||+|+||.++|++|++.|.++..
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999998765 33445567899999999999999999999999987632
Q ss_pred ------------CcccHHHHHHHHHHHHcCcccccccccccc--chhhhHhhhhHHH---HHhhhccCCCceeeeeccC
Q psy5440 774 ------------TTIVMKHFEQAIERVVAGMEKKTNVLQPEE--KKTVAYHEAGHAV---AGWFLRYADPLLKVSIIPR 835 (1036)
Q Consensus 774 ------------~~It~~d~~~Aiervi~gle~~~~~l~~~e--~~~vA~HEaGHAl---v~~~l~~~~~v~kvsI~pr 835 (1036)
..++.+||..|+..+.....+....-.+.. ..+..+.++...+ +.|++.+++.+.+..+.|+
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~ 511 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS 511 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC
Confidence 247788999998876543222111101110 1122233443333 5667777666666555443
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-37 Score=334.34 Aligned_cols=253 Identities=59% Similarity=0.981 Sum_probs=227.0
Q ss_pred cCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
++.+..+|+||+|+++++++|.+++..+.++..|..+|...|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.+.+.+...++.+|..+....||||||||||.+...++....++..+....++++|..|+++..+.+++||++||+++.|
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999999999999999999988776544445566678999999999998888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++++|||||++.+.++.|+.++|.+|++.+++... +..+.....++..++||+++||.++|++|+..|.+++...|+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~ 241 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 241 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999998654 334444567899999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHcCc
Q psy5440 778 MKHFEQAIERVVAGM 792 (1036)
Q Consensus 778 ~~d~~~Aiervi~gl 792 (1036)
.+||.+|+++++.|+
T Consensus 242 ~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 242 MVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999988775
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=330.44 Aligned_cols=260 Identities=58% Similarity=0.962 Sum_probs=208.0
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhc
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFV 620 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~v 620 (1036)
++++|+||+|++++++.|.+++..+.+++.|..+|...|+++||+||||||||++|+++|++++.+++.++|+++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCC-CChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH
Q psy5440 621 GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG-GHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 621 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~-~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp 699 (1036)
+.+...++.+|..+....|+||||||+|.+..++.....+ .+.+....+++++..+++.....+++||++||.++.||+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 8888899999999999999999999999998765432111 123445788999999998888889999999999999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHH
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMK 779 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~ 779 (1036)
+++|+|||++.+++++|+.++|.+|++.++.......+.+.....++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999986665555555567899999999999999999999999999888999999
Q ss_pred HHHHHHHHHHcCccccccccc
Q psy5440 780 HFEQAIERVVAGMEKKTNVLQ 800 (1036)
Q Consensus 780 d~~~Aiervi~gle~~~~~l~ 800 (1036)
||..|+.++..+..++...++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999988777665554
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=334.74 Aligned_cols=248 Identities=39% Similarity=0.650 Sum_probs=206.6
Q ss_pred CCCccccccccChHHHHHHHHHH-HHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFV-NFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV-~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.++++|+||+|++++|++|.+.+ ..+++++.|..++..+|+|++|+||||||||+||+++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 45799999999999999999855 45999999999999999999999999999999999999999999999999999888
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
+.+.....++.+|..++...|||+|+||||.++..++... .......+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888888999999999889999999999999876554321 1223467899999999998888999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-CCCChhhHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhc---
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-TDLDRDDLSRKLAALTP--GFTGADIANVCNEAALIAARDL--- 772 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-~~l~~~~l~~~LA~~T~--G~SgaDL~~LvneAal~A~r~~--- 772 (1036)
++++||||||+.|++++|+.++|.+||+.+++... ..++.+..+..+|..|. ||||+||.++|++|++.|.++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999986422 22344555677888754 9999999999999999998752
Q ss_pred --------CCcccHHHHHHHHHHHHc
Q psy5440 773 --------HTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 773 --------~~~It~~d~~~Aiervi~ 790 (1036)
...|+++||++|+.++..
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcC
Confidence 236999999999987544
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.1e-36 Score=334.97 Aligned_cols=247 Identities=40% Similarity=0.747 Sum_probs=217.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+||+|++++++.|.+.+.. +++|+.|..+|...++++||+||||||||++|+++|++++.+|+.++|+++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.++|.....++.+|..|+...||||||||||.+...++............++++||..|+++....+++||+|||+++.|
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999988765432222233456889999999998888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC----
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH---- 773 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~---- 773 (1036)
|++++|||||++.|++++|+.++|.+|++.+++.... ..+.....++..+.||+|+||.++|++|++.|.++..
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--CccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999986552 2333456788899999999999999999998876521
Q ss_pred ---------------------CcccHHHHHHHHHH
Q psy5440 774 ---------------------TTIVMKHFEQAIER 787 (1036)
Q Consensus 774 ---------------------~~It~~d~~~Aier 787 (1036)
..|+.+||..|+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 280 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 280 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTT
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHH
Confidence 24777788777765
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-35 Score=319.24 Aligned_cols=251 Identities=47% Similarity=0.788 Sum_probs=229.3
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
..+.++|+||+|++++++.|.+.+.. +.+++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999998877 89999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.+.|.....++.+|..++...|+||||||+|.+..++.....+........+.+++..++++....+++||+|||.++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999988776554444556678899999999998888899999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++++|++||++.+.++.|+.++|.+|++.+++... +..+..+..++..+.|++++||.++|++|+..|.++....|+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN--LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC--CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999998655 333444577899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy5440 778 MKHFEQAIERVVAG 791 (1036)
Q Consensus 778 ~~d~~~Aiervi~g 791 (1036)
.+|+.+|+.++...
T Consensus 248 ~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 248 MDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1e-37 Score=387.66 Aligned_cols=232 Identities=41% Similarity=0.770 Sum_probs=202.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+|++|++++|+.|.+++.+ ++++..|..++...++++||+||||||||+||+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34678999999999999999999887 78888999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.|+|..+..++.+|..|+...||||||||||.++..++............++++||..||++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988775432222345678899999999999888999999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
|++++|||||++.|++++|+.++|.+||+.+++... +..+..+..+++.+.|||++||.++|++|+..|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC--CCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998654 2333445678889999999999999999999998864
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=324.65 Aligned_cols=226 Identities=36% Similarity=0.609 Sum_probs=202.5
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-CCCeEEEechhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-NVPFITVSGSEFL 616 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is~se~~ 616 (1036)
+.+.++|+||+|++++|+.|.+.+.. +++|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45679999999999999999998877 888888764 35678999999999999999999999999 8999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVD 695 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd 695 (1036)
..+.|.....++.+|..++..+||||||||||.+..++... .......++++||..|+++.. ..+++||+|||+|+
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998876543 234556789999999999864 67899999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
.||++++| ||++.+++++|+.++|.+||+.+++.....++ +..+..|++.|.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999987654443 456688999999999999999999999998876
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.4e-34 Score=309.21 Aligned_cols=246 Identities=62% Similarity=0.970 Sum_probs=217.4
Q ss_pred cCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.+.+.++|+||+|+++++.++.+++..+.++..+..++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
.+.+.....++.+|+.+....|+++||||||.++..+.........+..+.+++++.+|++......++++++||+|+.|
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88887778899999999888899999999999987664322233556678899999999998888889999999999999
Q ss_pred cHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It 777 (1036)
|++++|++||++.|.++.|+.++|.+||+.+++... +..+..+..+|..++|++++||.++|++|+..|.++....|+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999987654 344444677999999999999999999999999998888999
Q ss_pred HHHHHHHH
Q psy5440 778 MKHFEQAI 785 (1036)
Q Consensus 778 ~~d~~~Ai 785 (1036)
.+|+++|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.6e-34 Score=322.61 Aligned_cols=227 Identities=38% Similarity=0.630 Sum_probs=199.7
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.++++|+||+|++++++.|.+.+.. +++|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++|+++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 56789999999999999999998877 677777765 5677899999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-CCCCeEEEEecCCCcc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-TTTNVVVLAATNRVDV 696 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-~~~~ViVIaaTN~pd~ 696 (1036)
.++|.....++.+|..++...||||||||||.+..+++.. .......++++|+..|+++. ...+++||+|||+++.
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 9999999999999999999999999999999998766432 23345678899999999884 5678999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
||++++| ||++.+++++|+.++|.+||+.++......++ +..+..|+..+.||+++||.++|++|++.|.++.
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999987654444 4456889999999999999999999999988864
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.7e-33 Score=305.72 Aligned_cols=255 Identities=60% Similarity=0.951 Sum_probs=219.9
Q ss_pred cccccccccccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCe
Q psy5440 528 VMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPF 607 (1036)
Q Consensus 528 ~~~~~~~~~~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf 607 (1036)
+..+...++. ..+.++|+||+|++++++++.+++..+.++..+..++..+|+|++|+||||||||+|++++|+.++.++
T Consensus 23 ~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 23 FTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp ---CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred cccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCE
Confidence 4444444444 347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEE
Q psy5440 608 ITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVV 687 (1036)
Q Consensus 608 i~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViV 687 (1036)
+.+++.++.+.+.+.....++.+|+.+....|+++||||||.++..+.........+....+++++.+|++......+++
T Consensus 102 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 102 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp EEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred EEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 99999999888887777889999999988889999999999998765432222345667889999999999887788999
Q ss_pred EEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 688 LAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 688 IaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
+++||+|+.||++++|++||++.|.++.|+.++|.+||+.+++... +..+..+..+|..++|++++||.++|++|+..
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLNEAALL 259 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654 34444566799999999999999999999999
Q ss_pred HHHhcCCcccHHHHHHHH
Q psy5440 768 AARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 768 A~r~~~~~It~~d~~~Ai 785 (1036)
|.++....|+.+|+++|+
T Consensus 260 a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 260 AAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHTTCCSBCHHHHHHHT
T ss_pred HHHhCCCCcCHHHHHHHh
Confidence 998888899999999875
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.3e-33 Score=320.05 Aligned_cols=226 Identities=38% Similarity=0.632 Sum_probs=194.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
..+.++|+||+|++++++.|.+.+.. +++|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 45678999999999999999998877 788888876 6778899999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCcc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVDV 696 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd~ 696 (1036)
.+.|.....++.+|..++...||||||||||.+...++.. .+.....++++||..|+++.. ..+++||+|||+++.
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 9999999999999999999999999999999998766432 234556788999999998854 568999999999999
Q ss_pred ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 697 LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
||++++| ||++.+++++|+.++|.+||+.++......++ +..+..|++.|.||+|+||.++|++|++.|.++
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999987654333 456688999999999999999999999999886
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.8e-35 Score=319.69 Aligned_cols=253 Identities=58% Similarity=0.958 Sum_probs=216.7
Q ss_pred ccCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 537 NSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 537 ~~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.++.+.++|+||+|++++++.|.+++..+.+++.|..+|...|+++||+||||||||++|+++|++++.|++.++++++.
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCC-CCCChhHHHHHHHHHHHhhcCcCC-CCeEEEEecCCC
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRN-FGGHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRV 694 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~-~~~~~e~~~~LnqLL~emDg~~~~-~~ViVIaaTN~p 694 (1036)
+.+.|.+...++.+|+.+....|+||||||+|.+...+.... ...+....+++++||..+++.... .+++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 999998888889999999999999999999999987653211 112233345678899999887543 459999999999
Q ss_pred ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHT 774 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~ 774 (1036)
+.||++++|+|||+..+.++.|+.++|.+||+.+++... +..+..+..++..+.|++|+||.++|++|++.|.+++..
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~ 239 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK--LANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC--CCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCC
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999998654 222333456888999999999999999999998887788
Q ss_pred cccHHHHHHHHHHHHcC
Q psy5440 775 TIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 775 ~It~~d~~~Aiervi~g 791 (1036)
.|+.+|+.+|+.++...
T Consensus 240 ~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 240 EVRQQHLKEAVERGIAG 256 (268)
T ss_dssp SCCHHHHHTSCTTCCCC
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 99999999888775444
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=8.9e-33 Score=325.64 Aligned_cols=245 Identities=39% Similarity=0.650 Sum_probs=220.4
Q ss_pred CCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~ 619 (1036)
..++|++|+|++++++.|.+++.. +++|+.|..+|+..|+++||+||||||||++|+++|++++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357899999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH
Q psy5440 620 VGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 620 vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp 699 (1036)
.|.....++.+|..|....||||||||||.+..+++.. .......++++||..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998876432 234456788999999999888889999999999999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCC-----
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHT----- 774 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~----- 774 (1036)
+++|+|||++.|+++.|+.++|.+||+.+++... +..+..+..++..+.||+++||.++|++|++.|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999998665 333444577899999999999999999999999987543
Q ss_pred ------------cccHHHHHHHHHHHHc
Q psy5440 775 ------------TIVMKHFEQAIERVVA 790 (1036)
Q Consensus 775 ------------~It~~d~~~Aiervi~ 790 (1036)
.|+++||..|+..+..
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHH
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCc
Confidence 4788888888876543
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.3e-32 Score=318.64 Aligned_cols=226 Identities=35% Similarity=0.606 Sum_probs=192.1
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-CCCeEEEechhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-NVPFITVSGSEFL 616 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is~se~~ 616 (1036)
..+.++|+||+|++++++.|.+.+.. +++|..|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 45679999999999999999998866 778877764 35678999999999999999999999999 8999999999999
Q ss_pred hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCc
Q psy5440 617 EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVD 695 (1036)
Q Consensus 617 e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd 695 (1036)
..++|.....++.+|..++...||||||||||.+...+... .......++++||..|+++.. ..+|+||+|||+|+
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 99999999999999999999999999999999998766543 234456789999999998764 67899999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
.||++|+| ||++.+++++|+.++|..||+.++......++ +..+..|+..|.||+|+||.++|++|++.|+++
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999986654343 456688999999999999999999999998875
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=9.7e-31 Score=286.79 Aligned_cols=242 Identities=36% Similarity=0.622 Sum_probs=206.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
+.+.++|+||+|++++++.|.+.+.. +.+|+.|..++ ..++++||+||||||||++|+++|++++.+|+.++|+++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45678999999999999999998876 67787777665 45789999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC---CCeEEEEecCCC
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT---TNVVVLAATNRV 694 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~---~~ViVIaaTN~p 694 (1036)
.+.|.+...++.+|..+....|+||||||+|.+...+.... +.......++||..+++.... .+++||++||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99999999999999999999999999999999987664321 223356778899999887553 579999999999
Q ss_pred ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC-
Q psy5440 695 DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH- 773 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~- 773 (1036)
+.||++++| ||+..+++++|+.++|..|++.++......++. ..+..++..+.|++++||.++|++|+..+.++..
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT-EALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH-HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999998765544443 4567899999999999999999999999998752
Q ss_pred -----------CcccHHHHHHHHHH
Q psy5440 774 -----------TTIVMKHFEQAIER 787 (1036)
Q Consensus 774 -----------~~It~~d~~~Aier 787 (1036)
..|+.+||..|+.+
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTS
T ss_pred hhcccccccccCCcCHHHHHHHHHH
Confidence 46899999988765
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=294.29 Aligned_cols=245 Identities=33% Similarity=0.582 Sum_probs=210.3
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
..+.++|+||+|++++++.|.+.+.. +.++..|...+ ..++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34578999999999999999999887 77888776664 67899999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC--CCCeEEEEecCCCc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--TTNVVVLAATNRVD 695 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--~~~ViVIaaTN~pd 695 (1036)
.+.|.....++.+|..++...|+||||||||.+...+... .+......+++||..+++... ..+++||+|||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999889999999999999999999999999998765432 244556788999999998753 46899999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcC--
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH-- 773 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~-- 773 (1036)
.||++++| ||+..++++.|+.++|.+|++.++......++ +..+..++..+.||+++||..+|++|+..+.++..
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS-EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 99999999999999999999999876554444 34567899999999999999999999999888533
Q ss_pred ----------CcccHHHHHHHHHHHHc
Q psy5440 774 ----------TTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 774 ----------~~It~~d~~~Aiervi~ 790 (1036)
..|+.+||..|+..+..
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGG
T ss_pred hhccccccccCCcCHHHHHHHHHhcCC
Confidence 57999999999998754
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=8.6e-30 Score=291.44 Aligned_cols=243 Identities=33% Similarity=0.587 Sum_probs=200.3
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
....++|+||+|++++++.|.+++.. +.+++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34568999999999999999998877 66777777666 45789999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC--CCCeEEEEecCCCc
Q psy5440 618 MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT--TTNVVVLAATNRVD 695 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~--~~~ViVIaaTN~pd 695 (1036)
.+.|.....++.+|..++...|+||||||||.+...+... .+......++.|+..|+++.. ..+|+||+|||+++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 9999999999999999999999999999999997765432 233456788899999998765 46799999999999
Q ss_pred cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc---
Q psy5440 696 VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL--- 772 (1036)
Q Consensus 696 ~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~--- 772 (1036)
.||++++| ||+..|+++.|+.++|.+||+.++......+..+ .+..|+..+.|+++++|..+|+.|+..+.++.
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 9999999999999999999999998765555544 55789999999999999999999999998872
Q ss_pred ---------CCcccHHHHHHHHHHH
Q psy5440 773 ---------HTTIVMKHFEQAIERV 788 (1036)
Q Consensus 773 ---------~~~It~~d~~~Aierv 788 (1036)
...|+.+||..++..+
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhccchhhcCCcCHHHHHHHHHHc
Confidence 3468999999998763
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=5.3e-30 Score=283.01 Aligned_cols=234 Identities=17% Similarity=0.227 Sum_probs=161.0
Q ss_pred hcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHh----hcCCCeEEEEcCchh
Q psy5440 574 LGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMA----RKHAPCILFIDEIDA 649 (1036)
Q Consensus 574 lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~A----r~~aP~ILfIDEIDa 649 (1036)
.+.+.|+++||+||||||||++|+++|++++.+|+.++|+++.+.++|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred hhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-----------CCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCCh
Q psy5440 650 VGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-----------TTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDI 718 (1036)
Q Consensus 650 L~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-----------~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~ 718 (1036)
++++++... ........+.+.|+..||+.. ...+++||+|||+++.||++|+|||||++.|++ |+.
T Consensus 111 ~~~~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 111 GAGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hcCCCCCCc-cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 987543221 111123356688888887432 456899999999999999999999999998874 799
Q ss_pred hhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHH--HH-HHHHHHHhcCCcccHHHHHHHHHHHHcCcccc
Q psy5440 719 KGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVC--NE-AALIAARDLHTTIVMKHFEQAIERVVAGMEKK 795 (1036)
Q Consensus 719 eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lv--ne-Aal~A~r~~~~~It~~d~~~Aiervi~gle~~ 795 (1036)
++|.+|++.++.... ++ ...++..+.||++++|..+. +. ....++++.-..+..+.+ -.+++... ..
T Consensus 188 ~~r~~Il~~~~~~~~--~~----~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~---~~~~~~~~-~~ 257 (293)
T 3t15_A 188 EDRIGVCTGIFRTDN--VP----AEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKI---GDKLLNSF-DG 257 (293)
T ss_dssp HHHHHHHHHHHGGGC--CC----HHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTC---HHHHTSCS-SC
T ss_pred HHHHHHHHHhccCCC--CC----HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHH---HHHHHcCC-CC
Confidence 999999998886432 33 34567788899999886431 10 000011110000111111 11222222 22
Q ss_pred ccccccccchhhhHhhhhHHHHHhh
Q psy5440 796 TNVLQPEEKKTVAYHEAGHAVAGWF 820 (1036)
Q Consensus 796 ~~~l~~~e~~~vA~HEaGHAlv~~~ 820 (1036)
...+.+.+....++||+||++++.-
T Consensus 258 ~~~~~~~~~~~~~l~~~g~~~~~eq 282 (293)
T 3t15_A 258 PPTFEQPKMTIEKLLEYGNMLVQEQ 282 (293)
T ss_dssp SCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHHHH
Confidence 3455667888999999999998754
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=8.1e-27 Score=290.06 Aligned_cols=244 Identities=40% Similarity=0.651 Sum_probs=215.3
Q ss_pred CCCccccccccChHHHHHHHHHHHH-hcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
...++|+||+|++++++.|.+++.. +++|+.|..+++..+.++||+||||||||+||+++|++++.+++.++|+++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3569999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCcccc
Q psy5440 619 FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LD 698 (1036)
+.+....+++.+|..+....|+||||||||.+..+++.. .......++++|+..|++.....+++||++||+++.||
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999999999999999999999999999999998776432 23445678899999999998888999999999999999
Q ss_pred HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCC----
Q psy5440 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHT---- 774 (1036)
Q Consensus 699 pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~---- 774 (1036)
++++|+|||++.+.++.|+.++|.+|++.++.... +..+..+..++..+.|++++|+..+|++|++.+.++...
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCC--CcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999999999999999999988665 233334567889999999999999999999988875432
Q ss_pred -------------cccHHHHHHHHHHH
Q psy5440 775 -------------TIVMKHFEQAIERV 788 (1036)
Q Consensus 775 -------------~It~~d~~~Aierv 788 (1036)
.++.+++..++...
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hhhccchhhhhhhhhhhhhhhcccccc
Confidence 35566777776654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=2.4e-25 Score=260.19 Aligned_cols=205 Identities=22% Similarity=0.283 Sum_probs=147.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLE 617 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e 617 (1036)
.+...|++|+|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999999877643 455679999999999999999999999999 9999999999999
Q ss_pred hhccCchhHHHHHHHHh---hcCCCeEEEEcCchhhhhcCCCCCCCCChh----------------HHHHHHHHHHHhh-
Q psy5440 618 MFVGVGPSRVRDMFSMA---RKHAPCILFIDEIDAVGRKRGGRNFGGHSE----------------QENTLNQLLVEMD- 677 (1036)
Q Consensus 618 ~~vG~~~~~vr~lF~~A---r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e----------------~~~~LnqLL~emD- 677 (1036)
.++|..+. ++.+|..| +...||||||||||+++++|.....++... .....++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998876 99999999 788999999999999998876542211110 0122345666665
Q ss_pred -cCcCCCCeEEEEecCCCccccHHhhCCCCcce--EEEecCC--ChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 678 -GFNTTTNVVVLAATNRVDVLDKALLRPGRFDR--QIFVPAP--DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 678 -g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr--~I~i~~P--d~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
+......++|++|||+++.+|++++||||||+ .+.++.| +.++|.+|++.+.. ..++.++..|.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~---------~dl~~~a~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL---------HDLDVANARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH---------HHHHHTC------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH---------HHHHHHHHhCCC-
Confidence 33344446666999999999999999999999 5666777 55889999876652 135678899999
Q ss_pred CHHHHHHHHHH
Q psy5440 753 TGADIANVCNE 763 (1036)
Q Consensus 753 SgaDL~~Lvne 763 (1036)
|+||.++|+.
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 9999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=5.4e-22 Score=218.01 Aligned_cols=226 Identities=20% Similarity=0.228 Sum_probs=174.4
Q ss_pred ccc-ccccChHHHHHHHHHHHHhcCchhHhhhcCCCC---ceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEec
Q psy5440 544 RFK-DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIP---KGAMLTGPPGTGKTLLAKATAGEA-------NVPFITVSG 612 (1036)
Q Consensus 544 ~F~-DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~p---kGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is~ 612 (1036)
.++ +|+|++++++.|.+++..+..+..+..+|...+ .++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 355 799999999999999998777777777776544 469999999999999999999987 349999999
Q ss_pred hhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 613 SEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 613 se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
+++...+.|.....++.+|..+ .++||||||+|.+...+.. .......++.|+..|+. ...+++||++||
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~ 177 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--NRDDLVVILAGY 177 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEEC
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhc--CCCCEEEEEeCC
Confidence 9999999999888899999887 3679999999999754432 12234677888888874 356789999998
Q ss_pred CCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhc-------CCCCCHHHHHHH
Q psy5440 693 RVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAAL-------TPGFTGADIANV 760 (1036)
Q Consensus 693 ~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~-------T~G~SgaDL~~L 760 (1036)
.+. .++|+|++ ||+..|.|++|+.+++..|++.++......++.+.+ ..++.. ....+++++.++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAE-TALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHH-HHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhccCCCCCcHHHHHHH
Confidence 654 35799999 999999999999999999999998865544554433 444443 222358999999
Q ss_pred HHHHHHHHHHh----cCCcccHHHHH
Q psy5440 761 CNEAALIAARD----LHTTIVMKHFE 782 (1036)
Q Consensus 761 vneAal~A~r~----~~~~It~~d~~ 782 (1036)
++.|+..+..+ ....++.+++.
T Consensus 255 l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 255 LDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99988766554 23456666554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=1.6e-21 Score=219.38 Aligned_cols=255 Identities=16% Similarity=0.233 Sum_probs=171.6
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhhhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLEM 618 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~e~ 618 (1036)
+..+|++++|++++++.+..++..+... ...++++||+||||||||++|+++|++++ .|++.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 3456999999999999988888776542 33468999999999999999999999987 48999998774432
Q ss_pred hc-------------------------------------------------cCchhHHHHHHHHhhc---------CCCe
Q psy5440 619 FV-------------------------------------------------GVGPSRVRDMFSMARK---------HAPC 640 (1036)
Q Consensus 619 ~v-------------------------------------------------G~~~~~vr~lF~~Ar~---------~aP~ 640 (1036)
+. |.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 1224456666655433 1278
Q ss_pred EEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec-----------CCCccccHHhhCCCCcce
Q psy5440 641 ILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT-----------NRVDVLDKALLRPGRFDR 709 (1036)
Q Consensus 641 ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT-----------N~pd~LDpALlRpGRFdr 709 (1036)
||||||+|.+.. ..++.|+..++.. ...++++++. |.+..++++|++ ||..
T Consensus 192 vl~IDEi~~l~~--------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLDI--------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSBH--------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccCh--------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 999999998832 3556666666532 2345555553 357789999999 9976
Q ss_pred EEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 710 QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 710 ~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
+.+++|+.+++.+|++.++......++.+ .++.+++.+.+.+.+++.++|+.|+..|..++...|+.+++++|+..++
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 89999999999999999887544445544 4577888887568899999999999999999999999999999998643
Q ss_pred cCccccccccccccchhhhHhhhhHHHHHhhhccC
Q psy5440 790 AGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYA 824 (1036)
Q Consensus 790 ~gle~~~~~l~~~e~~~vA~HEaGHAlv~~~l~~~ 824 (1036)
.. .+....+.+ ..+...++|.++.-....|+|.
T Consensus 332 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 364 (368)
T 3uk6_A 332 DE-SRSTQYMKE-YQDAFLFNELKGETMDTSLEHH 364 (368)
T ss_dssp CH-HHHHHHHC------------------------
T ss_pred CH-HHHHHHHHH-hhhhhhhhcCCccccccchhhh
Confidence 22 111222333 3334557888877666655543
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.84 E-value=1.1e-19 Score=202.62 Aligned_cols=213 Identities=20% Similarity=0.214 Sum_probs=167.6
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
..+|++++|.+++++.+.+.+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|+.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 458999999999999999888775321 23467899999999999999999999999999999998653
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC----------------CCCe
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT----------------TTNV 685 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~----------------~~~V 685 (1036)
....+...+.. ...+++|||||||.+.. ...+.|+..|+.... ..++
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 23344555543 24578999999998832 344555555553220 1248
Q ss_pred EEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
++|++||+...++++|++ ||+..+.+++|+.+++..|++.++......++. ..++.++..++| +.+++.+++..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~-~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEE-KAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECH-HHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999988755544443 345677877766 5689999999988
Q ss_pred HHHHHhcCCcccHHHHHHHHHH
Q psy5440 766 LIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 766 l~A~r~~~~~It~~d~~~Aier 787 (1036)
..+.......|+.+++..++..
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHhhcCCccCHHHHHHHHHH
Confidence 8887777888999999988876
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=1.3e-19 Score=198.08 Aligned_cols=236 Identities=24% Similarity=0.295 Sum_probs=164.7
Q ss_pred ccccChHHHHHHHHHHHH-hcCchhHhhh-cCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hhccCc
Q psy5440 547 DVAGCEEAKVEIMEFVNF-LKNPQQYIDL-GAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MFVGVG 623 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~-Lk~p~~~~~l-G~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~vG~~ 623 (1036)
+|+|++++++.|...+.. +..+.....+ +...|.++||+||||||||++|+++|..++.+++.++|+++.+ .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 599999999999887755 2221111111 1245789999999999999999999999999999999999876 455543
Q ss_pred -hhHHHHHHHHhh-----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--------CCCCeEEEE
Q psy5440 624 -PSRVRDMFSMAR-----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------TTTNVVVLA 689 (1036)
Q Consensus 624 -~~~vr~lF~~Ar-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------~~~~ViVIa 689 (1036)
...+++++..+. ...++||||||+|.+....... +.......+.+.|+..|++.. ...++++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 345777776431 1236899999999997654321 122233345678888887542 235788888
Q ss_pred e----cCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC-------------CCCCCCChhhHHHHHhhcC---
Q psy5440 690 A----TNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK-------------PLKTDLDRDDLSRKLAALT--- 749 (1036)
Q Consensus 690 a----TN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~-------------~l~~~l~~~~l~~~LA~~T--- 749 (1036)
+ ++.+..++++|++ ||+..|.+++|+.+++.+|++.++. .....++. ..++.|++.+
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTT-DAVKKIAEAAFRV 250 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECH-HHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCH-HHHHHHHHHhhhh
Confidence 8 5678899999998 9999999999999999999985321 11112333 3445666655
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHhcC-----C-cccHHHHHHHHHH
Q psy5440 750 ----PGFTGADIANVCNEAALIAARDLH-----T-TIVMKHFEQAIER 787 (1036)
Q Consensus 750 ----~G~SgaDL~~LvneAal~A~r~~~-----~-~It~~d~~~Aier 787 (1036)
.+...+.+.++|+.+...+..+.. . .|+.+++++|+..
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 245778999999887654432221 1 4889988887764
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=9.2e-19 Score=189.88 Aligned_cols=222 Identities=19% Similarity=0.268 Sum_probs=148.6
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCc-
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVG- 623 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~- 623 (1036)
...++|++++.+.+.+....+. ..+...+...+.++||+||||||||++|+++|.+++.||+.+++++. +.|..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 4568899888777766322221 11223345678899999999999999999999999999999998763 23333
Q ss_pred ---hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-CCCeEEEEecCCCccccH
Q psy5440 624 ---PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 624 ---~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~-~~~ViVIaaTN~pd~LDp 699 (1036)
...++.+|..+....++||||||||.+...+... .......++.|+..+++... ..+++||+|||.++.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 2567889999888889999999999997654321 12234566677777776543 446889999999999988
Q ss_pred -HhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC----CHHHHHHHHHHHHHHHHHhcCC
Q psy5440 700 -ALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF----TGADIANVCNEAALIAARDLHT 774 (1036)
Q Consensus 700 -ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~----SgaDL~~LvneAal~A~r~~~~ 774 (1036)
.+++ ||+..|.+|+++. |.+|........ .++ +..+..+++.+.|+ +.+++.+++..|. ....
T Consensus 183 ~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~--~~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-----~~~~ 250 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIAT--GEQLLEALELLG--NFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-----QMDP 250 (272)
T ss_dssp TTCTT--TSSEEEECCCEEE--HHHHHHHHHHHT--CSC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-----TSCG
T ss_pred hhhhc--ccceEEcCCCccH--HHHHHHHHHhcC--CCC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHh-----hhch
Confidence 5555 9999888865544 444444333211 233 44457788888886 4455555554432 2233
Q ss_pred cccHHHHHHHHHH
Q psy5440 775 TIVMKHFEQAIER 787 (1036)
Q Consensus 775 ~It~~d~~~Aier 787 (1036)
....+++..+++.
T Consensus 251 ~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 251 EYRVRKFLALLRE 263 (272)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.80 E-value=8.1e-19 Score=193.76 Aligned_cols=215 Identities=21% Similarity=0.249 Sum_probs=162.7
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhcc
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG 621 (1036)
..+|++++|.+++++.+.+.+...... ...+.++||+||||||||++|+++|++++.+++.++|+.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 357999999999999998888764321 234678999999999999999999999999999999987532
Q ss_pred CchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc----------------CCCCe
Q psy5440 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN----------------TTTNV 685 (1036)
Q Consensus 622 ~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~----------------~~~~V 685 (1036)
...+...|..+ ...+++|||||||.+.. ...+.|+..++... ...++
T Consensus 77 --~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 --PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 22333333321 24578999999998732 12333444443221 11368
Q ss_pred EEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 686 iVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
++|++||++..++++|++ ||+..+.+++|+.+++..+++.++......++.+ .++.++..++| +.+.+.++++.+.
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHH
Confidence 999999999999999998 9998999999999999999999987655445544 45678888876 5689999998887
Q ss_pred HHHHHhcCCcccHHHHHHHHHHH
Q psy5440 766 LIAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 766 l~A~r~~~~~It~~d~~~Aierv 788 (1036)
..+.......|+.+++..++...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 66666667789999998887764
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=6.8e-19 Score=199.18 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=153.4
Q ss_pred cccc-cccChHHHHHHHHHHHHhcCchhHh---hhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh-
Q psy5440 544 RFKD-VAGCEEAKVEIMEFVNFLKNPQQYI---DLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 618 (1036)
Q Consensus 544 ~F~D-V~G~eeaK~eL~eiV~~Lk~p~~~~---~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~- 618 (1036)
.+++ |+|++++++.|...+.......... ......+.++||+||||||||++|+++|..++.||+.++|+++...
T Consensus 12 ~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 12 HLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAG 91 (363)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCH
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccc
Confidence 3443 6999999999998885421111100 0112357899999999999999999999999999999999998754
Q ss_pred hccCc-hhHHHHHHHHh----hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-------------
Q psy5440 619 FVGVG-PSRVRDMFSMA----RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN------------- 680 (1036)
Q Consensus 619 ~vG~~-~~~vr~lF~~A----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~------------- 680 (1036)
|+|.. ...++.+|..+ ....++||||||||.+...+.....+.......+.+.||..|++..
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 67665 55677888776 3456789999999999877654433333444558899999998531
Q ss_pred ------CCCCeEEEEecCCC----------cc-----------------------------------ccHHhhCCCCcce
Q psy5440 681 ------TTTNVVVLAATNRV----------DV-----------------------------------LDKALLRPGRFDR 709 (1036)
Q Consensus 681 ------~~~~ViVIaaTN~p----------d~-----------------------------------LDpALlRpGRFdr 709 (1036)
...++++|+++|.. .. ++|+|+. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 22355566665532 11 6788887 9999
Q ss_pred EEEecCCChhhHHHHHHHhcCC-------------CCCCCChhhHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 710 QIFVPAPDIKGRASIFKVHLKP-------------LKTDLDRDDLSRKLAA--LTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 710 ~I~i~~Pd~eeR~~IL~~~L~~-------------l~~~l~~~~l~~~LA~--~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
.+.+.+|+.+++.+|+...+.. ....++ +...+.|+. ....+..++|++++..+...+..+
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~-~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFR-DEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEC-HHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999872221 111122 233345553 234445677888887776665554
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=8.1e-20 Score=218.14 Aligned_cols=225 Identities=24% Similarity=0.330 Sum_probs=150.6
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh----
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE---- 617 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e---- 617 (1036)
..-.+|++|+++++..+.+.+..-.-. ... .+..+||+||||||||+||+++|+.++.++..++|..+.+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345678999999999998766542100 011 3557999999999999999999999999999999887554
Q ss_pred -----hhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC-----------
Q psy5440 618 -----MFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT----------- 681 (1036)
Q Consensus 618 -----~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~----------- 681 (1036)
.|+|.....+...|..+....| ||||||||.+...+. ....+.||..||....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5677777888889998877776 999999999965432 1245667777764321
Q ss_pred --CCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC-------C---CCCCChhhHHHHHhh-c
Q psy5440 682 --TTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP-------L---KTDLDRDDLSRKLAA-L 748 (1036)
Q Consensus 682 --~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~-------l---~~~l~~~~l~~~LA~-~ 748 (1036)
..+++||+|||+++.|+++|++ ||+ .|.++.|+.+++..|++.|+.+ + ...++.+.+ ..++. .
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l-~~l~~~~ 295 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAI-LDIIRYY 295 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHH-HHHHHHH
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHH-HHHHHhC
Confidence 1578999999999999999999 995 6999999999999999998721 1 112333433 44444 3
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHh--cCCcccHHHHHHHHHH
Q psy5440 749 TPGFTGADIAN----VCNEAALIAARD--LHTTIVMKHFEQAIER 787 (1036)
Q Consensus 749 T~G~SgaDL~~----LvneAal~A~r~--~~~~It~~d~~~Aier 787 (1036)
+.....++|++ +|+.|+..+.+. ....|+.+++.+++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 33234455554 455554444443 2346889998887754
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=4.2e-20 Score=214.47 Aligned_cols=171 Identities=24% Similarity=0.267 Sum_probs=83.0
Q ss_pred ccc-ccccChHHHHHHHHHHHH-hcCchhHhhhcCC-CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh-hh
Q psy5440 544 RFK-DVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAK-IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE-MF 619 (1036)
Q Consensus 544 ~F~-DV~G~eeaK~eL~eiV~~-Lk~p~~~~~lG~~-~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e-~~ 619 (1036)
.++ +|+|++++|+.|...+.. ++.+..+..+... .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|
T Consensus 12 ~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~ 91 (444)
T 1g41_A 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (444)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccce
Confidence 344 789999999999887754 4444444444333 5789999999999999999999999999999999999998 48
Q ss_pred ccC-chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe-cCCCccc
Q psy5440 620 VGV-GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA-TNRVDVL 697 (1036)
Q Consensus 620 vG~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa-TN~pd~L 697 (1036)
+|. .+..++.+|..|... +++||+|.+.... .......++++||.+||++.....+ +++ ||+++.|
T Consensus 92 vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~l 159 (444)
T 1g41_A 92 VGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAF 159 (444)
T ss_dssp CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC-----------------------------------------------
T ss_pred eeccHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHH
Confidence 985 788999999998775 4589988874322 1223458899999999999776665 455 9999999
Q ss_pred cHHhhCCCCcceEEEecCCChh-hHHHHHH
Q psy5440 698 DKALLRPGRFDRQIFVPAPDIK-GRASIFK 726 (1036)
Q Consensus 698 DpALlRpGRFdr~I~i~~Pd~e-eR~~IL~ 726 (1036)
|+||+||||||+.|+++.|+.. .|.+|+.
T Consensus 160 d~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 160 RKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------------
T ss_pred HHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999999987 7888874
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.76 E-value=9.1e-18 Score=188.38 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=163.5
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEec
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSG 612 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~ 612 (1036)
...+++++|.++..+.|.+.+.... ....+.+++|+||||||||++|+++++++ +.++++++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3456899999988888876654321 12346789999999999999999999988 889999998
Q ss_pred hhhhhh----------------hccCchhH-HHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHH
Q psy5440 613 SEFLEM----------------FVGVGPSR-VRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLV 674 (1036)
Q Consensus 613 se~~e~----------------~vG~~~~~-vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~ 674 (1036)
...... ..+..... +..++..+.. ..|+||||||+|.+...+ .....+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 753221 11222233 3444444433 348999999999996421 13466777777
Q ss_pred HhhcCcCCCCeEEEEecCCC---ccccHHhhCCCCcce-EEEecCCChhhHHHHHHHhcCC--CCCCCChhhHHHHHhhc
Q psy5440 675 EMDGFNTTTNVVVLAATNRV---DVLDKALLRPGRFDR-QIFVPAPDIKGRASIFKVHLKP--LKTDLDRDDLSRKLAAL 748 (1036)
Q Consensus 675 emDg~~~~~~ViVIaaTN~p---d~LDpALlRpGRFdr-~I~i~~Pd~eeR~~IL~~~L~~--l~~~l~~~~l~~~LA~~ 748 (1036)
.++......++++|++||.+ +.+++++++ ||.. .+.+++|+.+++.+|++.++.. ....++ +..++.+++.
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHH
Confidence 76644325688999999987 789999999 8875 8999999999999999988752 122233 3334566666
Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 749 TP---GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 749 T~---G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
+. | ..+.+.++|+.|+..|..++...|+.+++..|+..+.
T Consensus 235 ~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 235 AAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 65 5 4678889999998888887888999999999998763
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=1.2e-17 Score=194.68 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=152.9
Q ss_pred CCCccccccc-cChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEech
Q psy5440 540 DIGVRFKDVA-GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGS 613 (1036)
Q Consensus 540 ~~~v~F~DV~-G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~s 613 (1036)
.+..+|++++ |..... .+..+......+ .. +.+++|+||||||||+||+++|+++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456899988 644322 222222222222 12 6689999999999999999999988 8899999999
Q ss_pred hhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
++...+...........|.......|+||||||+|.+..++ . ....|+..++........+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~---~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------G---VQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------H---HHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------H---HHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 88665433222211223443333368899999999985311 1 12233333332223445566666565
Q ss_pred Ccc---ccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 694 VDV---LDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 694 pd~---LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
+.. ++++|++ ||+ ..+.+++|+.++|.+|++.++......++.+ .+..|+..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 654 8899999 886 7899999999999999999886433334444 45778888876 7899999999988877
Q ss_pred HHhcCCcccHHHHHHHHHHHH
Q psy5440 769 ARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aiervi 789 (1036)
...+ ..|+.+++.+++....
T Consensus 314 ~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSS-SCCCHHHHHHHTSTTT
T ss_pred HHhC-CCCCHHHHHHHHHHHh
Confidence 6654 4799999998887644
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=1e-16 Score=164.52 Aligned_cols=202 Identities=19% Similarity=0.161 Sum_probs=146.0
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSEF 615 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se~ 615 (1036)
...+|++++|.+++++.|.+.+..- .+.++||+||||||||++|++++.++ ..+++.+++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 3467999999999998887766431 12349999999999999999999875 467888888754
Q ss_pred hhhhccCchhHHHHHHHHhh------cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 616 LEMFVGVGPSRVRDMFSMAR------KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar------~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
.. ...++..+.... ...++||+|||+|.+.. ...+.|+..++. ...++++|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHh--cCCCCeEEE
Confidence 32 122333332221 24679999999999842 223444444443 345788999
Q ss_pred ecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 690 ATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 690 aTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
+||.+..+++++.+ ||. .+.+++|+.+++.++++.++......++.+ .++.++..+.| +.+.+.+++..++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 99999999999999 887 899999999999999998876434334443 44667777766 5566667766655443
Q ss_pred HhcCCcccHHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aie 786 (1036)
..|+.+|+++++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 6899999998875
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.73 E-value=6e-17 Score=180.35 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=151.0
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh------hhh
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE------FLE 617 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se------~~e 617 (1036)
.+++|+|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.++|.. +..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467899999998877655432 247999999999999999999999999999998842 221
Q ss_pred hhc-cCchhHHHHHHHHhhcCC---CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC---------cCCCC
Q psy5440 618 MFV-GVGPSRVRDMFSMARKHA---PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF---------NTTTN 684 (1036)
Q Consensus 618 ~~v-G~~~~~vr~lF~~Ar~~a---P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~---------~~~~~ 684 (1036)
... ..... .| ..... .+||||||+|.+.. .+.+.|+..|+.. ..+.+
T Consensus 91 ~~~~~~~~~----~~--~~~~g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 91 TMIYNQHKG----NF--EVKKGPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp EEEEETTTT----EE--EEEECTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred ceeecCCCC----ce--EeccCcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCC
Confidence 111 00000 00 00112 37999999998732 3445555555431 23456
Q ss_pred eEEEEecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC----------------------CCCC
Q psy5440 685 VVVLAATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK----------------------TDLD 737 (1036)
Q Consensus 685 ViVIaaTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~----------------------~~l~ 737 (1036)
++||+|+|..+ .|+++|++ ||+..+.++.|+.++|.+|++.++.... ..++
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred EEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 88999988544 38999999 9998999999999999999999876421 1122
Q ss_pred hhhHHHHHhhc-------------------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcC
Q psy5440 738 RDDLSRKLAAL-------------------TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 738 ~~~l~~~LA~~-------------------T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~g 791 (1036)
+.+.+.++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+|+..++..
T Consensus 229 -~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 229 -ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp -HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 2223333321 1266899999999999888888889999999999999988765
No 45
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=9e-17 Score=181.08 Aligned_cols=217 Identities=21% Similarity=0.281 Sum_probs=156.8
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----------CCCeEEEe
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----------NVPFITVS 611 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----------gvpfi~Is 611 (1036)
..+++++|.++..++|.+.+..... ...+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4458999999999999887766422 2346789999999999999999999987 89999999
Q ss_pred chhhh-h----------hh-------ccCchh-HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHH-HHH
Q psy5440 612 GSEFL-E----------MF-------VGVGPS-RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENT-LNQ 671 (1036)
Q Consensus 612 ~se~~-e----------~~-------vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~-Lnq 671 (1036)
|.+.. . .. .+.... .+..++..+.... +||||||+|.+...+. ... +..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~----------~~~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG----------GDIVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT----------SHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC----------CceeHHH
Confidence 87643 1 11 122222 2444455444444 4999999999964321 133 555
Q ss_pred HHHHhhcCcCCCCeEEEEecCCC---ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcC-CCC-CCCChhhHHHHHh
Q psy5440 672 LLVEMDGFNTTTNVVVLAATNRV---DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK-PLK-TDLDRDDLSRKLA 746 (1036)
Q Consensus 672 LL~emDg~~~~~~ViVIaaTN~p---d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~-~l~-~~l~~~~l~~~LA 746 (1036)
|+... .++.||++||.+ +.+++++++ ||...+.+++|+.+++.+|++.++. ... ..++ +..++.++
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~ 228 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIA 228 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHH
Confidence 54332 689999999987 688999998 8888999999999999999999875 222 2233 33456667
Q ss_pred hcCCC--CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 747 ALTPG--FTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 747 ~~T~G--~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
+.+.+ -..+.+.++|+.|...|. +...|+.+++..|+..+.
T Consensus 229 ~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 229 AISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 66652 244667788888877665 557899999999998764
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=2.2e-17 Score=183.15 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=140.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
.....+|++++|++++++.|.+++.. ...|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 34457899999999999988887762 34567789999999999999999999999999999987742
Q ss_pred hccCchhHHHHHHHHhhcC-----CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 619 FVGVGPSRVRDMFSMARKH-----APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
...++..+..+... .++||||||+|.+.. . ...+.|+..++. ...++.+|++||.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~---~~~~~L~~~le~--~~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------A---ESQRHLRSFMEA--YSSNCSIIITANN 145 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------H---HHHHHHHHHHHH--HGGGCEEEEEESS
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------H---HHHHHHHHHHHh--CCCCcEEEEEeCC
Confidence 34455544443222 578999999999841 1 233445555543 2356889999999
Q ss_pred CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCC-------CCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 694 VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP-------LKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 694 pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~-------l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
+..++++|++ ||. .+.+++|+.++|.+|++.++.. ....++....+..++..+.|- .+++.+.+..++
T Consensus 146 ~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~L~~~~- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGELDSYS- 220 (324)
T ss_dssp GGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHHHHHHG-
T ss_pred ccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHHHHHHh-
Confidence 9999999999 884 6999999999987776655432 122333325567788877653 344445444433
Q ss_pred HHHHhcCCcccHHHHHHHHHH
Q psy5440 767 IAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 767 ~A~r~~~~~It~~d~~~Aier 787 (1036)
....|+.+++..++..
T Consensus 221 -----~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 221 -----SKGVLDAGILSLVTND 236 (324)
T ss_dssp -----GGTCBCC---------
T ss_pred -----ccCCCCHHHHHHHhCC
Confidence 2345888887766543
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=4.2e-17 Score=181.22 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=134.9
Q ss_pred CCccccccc-cC--hHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 541 IGVRFKDVA-GC--EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 541 ~~v~F~DV~-G~--eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
+..+|++++ |. ..+...+..++ ..+ ...+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 457899998 53 33333333333 222 1245789999999999999999999988 89999999998
Q ss_pred hhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
+...+.+.........|..... .++||||||+|.+..++ ...+ .++..++........+||++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~~~~---~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------RTQI---EFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------HHHH---HHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------HHHH---HHHHHHHHHHHCCCeEEEEecCCh
Confidence 8765543322222223333322 37899999999985311 1122 222222222234456777777777
Q ss_pred c---cccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 695 D---VLDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 695 d---~LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
. .++++|++ ||+ ..+.+++ +.++|.+|++.++......++.+ .++.|+..+ | +.+++.++++.+...
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 6 68999999 886 7789999 99999999999987555445544 457788888 4 678888888876544
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=1.1e-16 Score=181.88 Aligned_cols=234 Identities=20% Similarity=0.241 Sum_probs=145.7
Q ss_pred ccccChHHHHHHHHHHHH-hcCchhH-----------------hhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 547 DVAGCEEAKVEIMEFVNF-LKNPQQY-----------------IDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~-Lk~p~~~-----------------~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
+|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|..++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999887732 1111100 0112345678999999999999999999999999999
Q ss_pred EEechhhhh-hhccCc-hhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--
Q psy5440 609 TVSGSEFLE-MFVGVG-PSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-- 680 (1036)
Q Consensus 609 ~Is~se~~e-~~vG~~-~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-- 680 (1036)
.++|+.+.. .+.|.. ...+..+|..+. ...++||||||||.+...+.......+.......+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999998763 455543 344566665433 235789999999999776433222222223346788888887531
Q ss_pred -----------------CCCCeEEEEecCCC-----------------------------------------ccccHHhh
Q psy5440 681 -----------------TTTNVVVLAATNRV-----------------------------------------DVLDKALL 702 (1036)
Q Consensus 681 -----------------~~~~ViVIaaTN~p-----------------------------------------d~LDpALl 702 (1036)
...++++|++||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12567888887721 12457777
Q ss_pred CCCCcceEEEecCCChhhHHHHHHHhcC-------------CCCCCCChhhHHHHHhhcCC--CCCHHHHHHHHHHHHHH
Q psy5440 703 RPGRFDRQIFVPAPDIKGRASIFKVHLK-------------PLKTDLDRDDLSRKLAALTP--GFTGADIANVCNEAALI 767 (1036)
Q Consensus 703 RpGRFdr~I~i~~Pd~eeR~~IL~~~L~-------------~l~~~l~~~~l~~~LA~~T~--G~SgaDL~~LvneAal~ 767 (1036)
+ ||+..+.+++++.++...|+...+. .....++ +..++.|+.... ....+.|.+++..+...
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE-EEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC-HHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 7 8989999999999999999973111 1112233 333455655532 34578999998888776
Q ss_pred HHHhcCC------cccHHHHHH
Q psy5440 768 AARDLHT------TIVMKHFEQ 783 (1036)
Q Consensus 768 A~r~~~~------~It~~d~~~ 783 (1036)
++.+... .|+.++++.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTT
T ss_pred HHhhccCCCCCEEEEeHHHhcC
Confidence 6654321 366666654
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=5.9e-17 Score=189.12 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=149.6
Q ss_pred CccccccccChHHH---HHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh
Q psy5440 542 GVRFKDVAGCEEAK---VEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK---~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~ 618 (1036)
..+|++++|+++++ ..|...+..- + ..++||+||||||||++|++||+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-----------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-----------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 36799999999998 5565555431 1 257999999999999999999999999999998753
Q ss_pred hccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec--C
Q psy5440 619 FVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT--N 692 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT--N 692 (1036)
.+...++.+|..+.. ..++||||||||.+... ..+.||..++. ..+++|++| |
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSC
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCCC
Confidence 334567777777653 45799999999998432 22345555553 457777776 4
Q ss_pred CCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-------CCCChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 693 RVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-------TDLDRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 693 ~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-------~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
....++++|++ |+. .+.+++|+.+++..+++.++.... ..++ +..++.|+..++| +.+++.+++..++
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~-~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP-DETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC-HHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC-HHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 44589999999 885 688999999999999999987522 2233 3455778888766 5688888888877
Q ss_pred HHHHHh--cCCcccHHHHHHHHHH
Q psy5440 766 LIAARD--LHTTIVMKHFEQAIER 787 (1036)
Q Consensus 766 l~A~r~--~~~~It~~d~~~Aier 787 (1036)
..+... +...|+.+++.+++.+
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HhcccccCCCCccCHHHHHHHHhh
Confidence 665322 3457999999988764
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.71 E-value=1.4e-16 Score=166.82 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=140.5
Q ss_pred CccccccccCh---HHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 542 GVRFKDVAGCE---EAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 542 ~v~F~DV~G~e---eaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
..+|++++|.+ ++.+.+..++. . ..+.++||+||||||||++|+++++++ +.+++.+++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46899999833 34443333322 1 135789999999999999999999877 478999999887
Q ss_pred hhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCe-EEEEecCCC
Q psy5440 616 LEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV-VVLAATNRV 694 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~V-iVIaaTN~p 694 (1036)
...+.. .+.. ...+++|||||+|.+... ......+..++.. ......+ +|+++++.+
T Consensus 92 ~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~---~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 92 ASISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNR---VAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHH---HHHHCSCEEEEEESSCT
T ss_pred HHHHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHH---HHHcCCCeEEEEcCCCH
Confidence 654321 1111 134689999999998421 1112223333332 2233344 555554445
Q ss_pred c---cccHHhhCCCCcc--eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 695 D---VLDKALLRPGRFD--RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 695 d---~LDpALlRpGRFd--r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
. .+++++.+ ||. ..+.+++|+.+++.+++..++......++. ..++.++..+.| +.+++.++++.+...|.
T Consensus 150 ~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 150 MEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPE-DVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCH-HHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 4 46689998 776 899999999999999999988754444554 445678888866 78999999998887775
Q ss_pred HhcCCcccHHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 770 r~~~~~It~~d~~~Aie 786 (1036)
.+ ...|+.+++++++.
T Consensus 226 ~~-~~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VH-QRKLTIPFVKEMLR 241 (242)
T ss_dssp HH-TCCCCHHHHHHHHT
T ss_pred Hh-CCCCcHHHHHHHhh
Confidence 54 45799999988864
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=5.1e-16 Score=160.85 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=148.7
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
...+|++++|.+++++.|.+.+.. ...+..++|+||||||||++|++++++++..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 446799999999999988877754 1335679999999999999999999977432
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhh----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMAR----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++.. ......++.++..+. ...|.+|+|||+|.+.. ..++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------~~~~~l 146 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNAL 146 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------HHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------HHHHHH
Confidence 12222211 012234566666543 23579999999998731 345666
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
+..++. ...++++|++||.+..+++++++ |+ ..+.+++|+.+++.++++.++......++. ..++.+++.+.|
T Consensus 147 ~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~G- 219 (250)
T 1njg_A 147 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP-RALQLLARAAEG- 219 (250)
T ss_dssp HHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHTT-
T ss_pred HHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCC-
Confidence 666663 35678999999999999999998 75 679999999999999999888644434444 345678888877
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+++.+.++++.|+.. ....|+.+++++++
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 788999998877533 24589999998875
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.6e-16 Score=176.15 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=160.8
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc------CCCeEEEechhh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA------NVPFITVSGSEF 615 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea------gvpfi~Is~se~ 615 (1036)
...+++++|.++..+.|.+.+..... ...+..++|+||||||||+||+++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45568999999888877765533211 2346789999999999999999999988 899999998753
Q ss_pred hh------hh----------ccCchhH-HHHHHHHhhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 616 LE------MF----------VGVGPSR-VRDMFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 616 ~e------~~----------vG~~~~~-vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
.. .. .+..... ...++...... .|+||+|||+|.+..... ...+..|+..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 21 10 1111222 34444444443 389999999999964321 145677777776
Q ss_pred cCcCCCCeEEEEecCCC---ccccHHhhCCCCcc-eEEEecCCChhhHHHHHHHhcCC-CC-CCCChhhHHHHHhhcCC-
Q psy5440 678 GFNTTTNVVVLAATNRV---DVLDKALLRPGRFD-RQIFVPAPDIKGRASIFKVHLKP-LK-TDLDRDDLSRKLAALTP- 750 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~p---d~LDpALlRpGRFd-r~I~i~~Pd~eeR~~IL~~~L~~-l~-~~l~~~~l~~~LA~~T~- 750 (1036)
.. ...++.+|++||.+ ..+++.+.+ ||. +.+.+++++.+++.+|++.++.. .. ..++ +...+.++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 54 45578999999987 467888888 665 58999999999999999987652 11 1233 444566766665
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 751 --GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 751 --G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
| +.+.+.++|+.|+..|..++...|+.+++..|+..+.
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 4677788999998888877888999999999998864
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.70 E-value=2.8e-16 Score=175.05 Aligned_cols=220 Identities=20% Similarity=0.251 Sum_probs=142.4
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-------CCeEEEec
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-------VPFITVSG 612 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-------vpfi~Is~ 612 (1036)
....+|++++|++++++.+.... + .+ .+.++||+||||||||++|+++|..++ .+| +|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~ 82 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SS 82 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CC
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccc---cc
Confidence 34678999999998776542211 1 11 234699999999999999999999886 232 22
Q ss_pred hhhhh---------------------hhccCchhH------HHHHHHHhh---------cCCCeEEEEcCchhhhhcCCC
Q psy5440 613 SEFLE---------------------MFVGVGPSR------VRDMFSMAR---------KHAPCILFIDEIDAVGRKRGG 656 (1036)
Q Consensus 613 se~~e---------------------~~vG~~~~~------vr~lF~~Ar---------~~aP~ILfIDEIDaL~~~r~~ 656 (1036)
..+.. ...+..... +...|..+. ...++||||||||.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 21110 001111111 122222221 11368999999998832
Q ss_pred CCCCCChhHHHHHHHHHHHhhc----C-------cCCCCeEEEEecCCCc-cccHHhhCCCCcceEEEecCC-ChhhHHH
Q psy5440 657 RNFGGHSEQENTLNQLLVEMDG----F-------NTTTNVVVLAATNRVD-VLDKALLRPGRFDRQIFVPAP-DIKGRAS 723 (1036)
Q Consensus 657 ~~~~~~~e~~~~LnqLL~emDg----~-------~~~~~ViVIaaTN~pd-~LDpALlRpGRFdr~I~i~~P-d~eeR~~ 723 (1036)
...+.|+..|+. + ..+.++++|+|||..+ .++++|++ ||+..+.+++| +.+.+.+
T Consensus 159 ----------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 159 ----------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp ----------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred ----------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 234455554442 1 1123789999999755 89999999 99999999998 6777878
Q ss_pred HHHHhcCC-----------------------------CCCCCChhhHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHHh
Q psy5440 724 IFKVHLKP-----------------------------LKTDLDRDDLSRKLAALTPG---FTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 724 IL~~~L~~-----------------------------l~~~l~~~~l~~~LA~~T~G---~SgaDL~~LvneAal~A~r~ 771 (1036)
|++.++.. ....++. ..++.|+....+ -+.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 88763210 0112333 233444444332 26799999999998888888
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy5440 772 LHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 772 ~~~~It~~d~~~Aiervi~g 791 (1036)
++..|+.+|+.+|+..++..
T Consensus 306 ~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 306 GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp TCSBCCHHHHHHHHHHHHGG
T ss_pred CCCcCCHHHHHHHHHHHHhh
Confidence 88889999999999987664
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=5.4e-17 Score=192.55 Aligned_cols=224 Identities=20% Similarity=0.236 Sum_probs=145.9
Q ss_pred CCCccccccccChHHHHHHHHHHHHhc--CchhHhhhcC---CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLK--NPQQYIDLGA---KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk--~p~~~~~lG~---~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
....+|+||+|.+++++.|.+++.... .+..|...|. ..++++||+||||||||++|+++|++++.+++.++|++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345689999999999999988886532 1222333333 35689999999999999999999999999999999988
Q ss_pred hhhhhccC-------chhHHHHHHHHh-----hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC
Q psy5440 615 FLEMFVGV-------GPSRVRDMFSMA-----RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT 682 (1036)
Q Consensus 615 ~~e~~vG~-------~~~~vr~lF~~A-----r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~ 682 (1036)
+....... ....++.+|..+ ....++||||||+|.+.... ...++.|+..++. ..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~ 179 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TS 179 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cC
Confidence 65432110 001123344433 23568999999999995321 1224444444442 23
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvn 762 (1036)
..+++|+++.....+.+ +. |+...+.|++|+.+++.+++...+......++.+. +..|++.+.| |++.+++
T Consensus 180 ~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G----diR~~i~ 250 (516)
T 1sxj_A 180 TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG----DIRQVIN 250 (516)
T ss_dssp SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT----CHHHHHH
T ss_pred CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----cHHHHHH
Confidence 34566555544445543 44 45568999999999999999887754333355444 5678877755 5555555
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 763 EAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 763 eAal~A~r~~~~~It~~d~~~Aier 787 (1036)
.....+. ....|+.+++.+++..
T Consensus 251 ~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 251 LLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHHh--cCCCCchHHHHHHHHh
Confidence 4333222 3567888888777664
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=1.6e-15 Score=170.09 Aligned_cols=213 Identities=20% Similarity=0.267 Sum_probs=158.3
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccC
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGV 622 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~ 622 (1036)
.+|++++|.+.+++.+...+..-+.+ ...+..++|+||||||||+||+++|+++++++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 37999999998888877666542111 234577999999999999999999999999988887765421
Q ss_pred chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc----------------CCCCeE
Q psy5440 623 GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN----------------TTTNVV 686 (1036)
Q Consensus 623 ~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~----------------~~~~Vi 686 (1036)
...+..++... ..++|+||||+|.+.+ ...+.+ +..++... .-..+.
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHH---HHHHHTSCCCC---------------CCCE
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHH---HHHHHhcccceeeccCcccccccccCCCeE
Confidence 22344444322 3457999999998842 112222 22232211 012467
Q ss_pred EEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy5440 687 VLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 687 VIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal 766 (1036)
++++||++..|++.+++ ||...+.+++|+.+++.+|++.........++.+ .+..+|..+.| +++++.++++.+..
T Consensus 153 li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~-~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA-AAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 88899999999999999 9998899999999999999998876544445544 45788988887 56899999999888
Q ss_pred HHHHhcCCcccHHHHHHHHHHH
Q psy5440 767 IAARDLHTTIVMKHFEQAIERV 788 (1036)
Q Consensus 767 ~A~r~~~~~It~~d~~~Aierv 788 (1036)
.|..++...|+.+++++|+..+
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHh
Confidence 8887778889999999999885
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=5.2e-17 Score=162.91 Aligned_cols=159 Identities=22% Similarity=0.375 Sum_probs=116.4
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
..+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 356999999998777665543 22 336789999999999999999999986 78999999
Q ss_pred chhhhh--hhccCchhHHHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEE
Q psy5440 612 GSEFLE--MFVGVGPSRVRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVL 688 (1036)
Q Consensus 612 ~se~~e--~~vG~~~~~vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVI 688 (1036)
+.++.. .+.+.....++.++..+. ...|+||||||+|.+...+... ........+..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~---~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL---A----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhh---c----cCCeEEE
Confidence 988763 344445566777777654 4568899999999997543211 1122233344433 2 3568889
Q ss_pred EecCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHH
Q psy5440 689 AATNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIF 725 (1036)
Q Consensus 689 aaTN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL 725 (1036)
++||.++ .+++++++ ||+ .|.+++|+.++|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 9998876 78999999 998 6999999999998876
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=1.7e-16 Score=186.09 Aligned_cols=207 Identities=22% Similarity=0.305 Sum_probs=144.3
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 35799999999888877665532 234579999999999999999999986 78899999
Q ss_pred chhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 612 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
++ ..|.|....+++.+|..+....|+||||| +. . ...+.|+..|+ ...+.||++|
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~----~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------I----DASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------h----hHHHHHHHhhc----CCCEEEEecC
Confidence 88 66778888899999999998889999999 10 0 12344444443 4579999999
Q ss_pred CCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC----CCCCChhhHHHHHhhcCCC-----CCHHHH
Q psy5440 692 NRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----KTDLDRDDLSRKLAALTPG-----FTGADI 757 (1036)
Q Consensus 692 N~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----~~~l~~~~l~~~LA~~T~G-----~SgaDL 757 (1036)
|.++ .+|++|+| ||.. |.|+.|+.+++..||+.++... ...+. +..+..++..+.+ +.+...
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~-~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSIT-DDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCC-HHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhccCcCCcHH
Confidence 9987 69999999 9974 9999999999999999888753 22333 3334445544333 445678
Q ss_pred HHHHHHHHHHHHHh-cCCcccHHHHHHHHHHHH
Q psy5440 758 ANVCNEAALIAARD-LHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 758 ~~LvneAal~A~r~-~~~~It~~d~~~Aiervi 789 (1036)
..++++|+..+..+ ...+.+.++++..++++.
T Consensus 375 i~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 88888877655443 345566777777766653
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=3.3e-16 Score=171.86 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=139.1
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM---- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~---- 618 (1036)
++++|++++++.+...+......-. -..++...+||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999999888876321000 001223479999999999999999999987 568999999876432
Q ss_pred -hccCch-----hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC---------CC
Q psy5440 619 -FVGVGP-----SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT---------TT 683 (1036)
Q Consensus 619 -~vG~~~-----~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~---------~~ 683 (1036)
..|... .....+.........+||||||+|.+.. .+.+.|+..|+.... -.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 222110 0001222333334458999999998832 355666666653221 13
Q ss_pred CeEEEEecCC--------------------------CccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC-----
Q psy5440 684 NVVVLAATNR--------------------------VDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----- 732 (1036)
Q Consensus 684 ~ViVIaaTN~--------------------------pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----- 732 (1036)
++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++..+
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998 5578899998 999999999999999999999987642
Q ss_pred ----CCCCChhhHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Q psy5440 733 ----KTDLDRDDLSRKLAALTP--GFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 733 ----~~~l~~~~l~~~LA~~T~--G~SgaDL~~LvneAal~A~ 769 (1036)
...++ +..++.|+...- ..+.++|.++++.+...+.
T Consensus 238 ~~~~~~~~~-~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEEC-HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeC-HHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 12233 334456666543 4677889998887765543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=4.8e-16 Score=192.13 Aligned_cols=222 Identities=19% Similarity=0.268 Sum_probs=161.1
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
-+|++|+|.++..+.+.+++. . ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 468999999987777655442 1 245789999999999999999999976 667888888
Q ss_pred hhhh--hhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 613 SEFL--EMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 613 se~~--e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
+.+. ..+.|....+++.+|..+....++||||||+|.+.+.+... .......+.|. .+-....+.+|++
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~----~~l~~~~~~~I~a 321 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIK----PLLSSGKIRVIGS 321 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHS----SCSSSCCCEEEEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHH----HHHhCCCeEEEEE
Confidence 8776 35778888899999999988888999999999997654321 11122233332 2234567899999
Q ss_pred cCCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC----CCCCChhhHHHHHhhcC-----CCCCHHH
Q psy5440 691 TNRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----KTDLDRDDLSRKLAALT-----PGFTGAD 756 (1036)
Q Consensus 691 TN~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----~~~l~~~~l~~~LA~~T-----~G~SgaD 756 (1036)
||.++ .+|++|.| ||+ .+.++.|+.++|.+||+.++..+ ...+..+ .+..++..+ ..+.+..
T Consensus 322 t~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp ECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTTHH
T ss_pred eCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCchH
Confidence 99754 57899999 998 69999999999999999876531 1223333 334444443 3356678
Q ss_pred HHHHHHHHHHHHHH----hcCCcccHHHHHHHHHHHH
Q psy5440 757 IANVCNEAALIAAR----DLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 757 L~~LvneAal~A~r----~~~~~It~~d~~~Aiervi 789 (1036)
+..++++|+..+.. .....|+.+|+.+++.+..
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 88999988766544 2356799999999998864
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.5e-15 Score=169.11 Aligned_cols=208 Identities=16% Similarity=0.121 Sum_probs=145.7
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC------CCeEEEech
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN------VPFITVSGS 613 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag------vpfi~Is~s 613 (1036)
....+|++++|.+++++.|...+.. . . +.++||+||||||||++|+++|++++ ..++.++++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKS---A--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTC---T--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhc---C--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3456899999999998887665421 1 1 23499999999999999999999854 468888887
Q ss_pred hhhhhhccCchhHHHHHHHHhh----------------cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMAR----------------KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD 677 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD 677 (1036)
+... ...+++.+.... ...+.||||||+|.+.. ...+.|+..|+
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le 158 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTME 158 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHH
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHH
Confidence 6421 122222221111 12357999999998842 23355565555
Q ss_pred cCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHH
Q psy5440 678 GFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADI 757 (1036)
Q Consensus 678 g~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL 757 (1036)
.. ..++.+|.+||.+..+++++++ |+. .+.+++|+.++...+++..+......++.+ .++.++..+.| ..+.+
T Consensus 159 ~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 159 TY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-DLRRG 231 (353)
T ss_dssp HT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-CHHHH
T ss_pred hc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 32 3457777889999999999999 886 789999999999999998876544445544 45778888876 45667
Q ss_pred HHHHHHHHHHHHHhcCC-cccHHHHHHHHH
Q psy5440 758 ANVCNEAALIAARDLHT-TIVMKHFEQAIE 786 (1036)
Q Consensus 758 ~~LvneAal~A~r~~~~-~It~~d~~~Aie 786 (1036)
.+++..++..+.+.... .|+.+++.+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 77777766665444333 799999877654
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=4.7e-15 Score=166.87 Aligned_cols=221 Identities=14% Similarity=0.160 Sum_probs=159.3
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCc--eeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhh
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK--GAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFL 616 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pk--GvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~ 616 (1036)
..+++++|.++..+.|.+.+..... ...+. .++|+||||||||++++++++++ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 4568999999999998887765311 12234 89999999999999999999988 6789999987543
Q ss_pred hh----------h------ccCchhHHHH-HHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy5440 617 EM----------F------VGVGPSRVRD-MFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG 678 (1036)
Q Consensus 617 e~----------~------vG~~~~~vr~-lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg 678 (1036)
.. + .+.....+.+ +..... ...|.||+|||+|.+. ...++.|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 21 0 1112222222 222222 2458999999999881 2456666666654
Q ss_pred CcC--CCCeEEEEecCCC---ccccHHhhCCCCcce-EEEecCCChhhHHHHHHHhcCC-C-CCCCChhhHHHHHhhcC-
Q psy5440 679 FNT--TTNVVVLAATNRV---DVLDKALLRPGRFDR-QIFVPAPDIKGRASIFKVHLKP-L-KTDLDRDDLSRKLAALT- 749 (1036)
Q Consensus 679 ~~~--~~~ViVIaaTN~p---d~LDpALlRpGRFdr-~I~i~~Pd~eeR~~IL~~~L~~-l-~~~l~~~~l~~~LA~~T- 749 (1036)
... ..++.||++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. . ...++ +..++.+++.+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC-HHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHh
Confidence 322 2588999999988 678888888 8875 8999999999999999888753 1 11233 44556777777
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 750 --------PGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 750 --------~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
.| ..+.+.++|+.|+..|..++...|+.+++..|+..+.
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 44 5678899999999888888888999999999988754
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.7e-15 Score=187.51 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=137.9
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCc-eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhc
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK-GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFV 620 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pk-GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~v 620 (1036)
.++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.||+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46799999999999988877432111 011233 69999999999999999999987 78999999999988765
Q ss_pred cCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------CCCCeEEEEec
Q psy5440 621 GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---------TTTNVVVLAAT 691 (1036)
Q Consensus 621 G~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---------~~~~ViVIaaT 691 (1036)
.. ...++...+...++||||||||.+. ..+.+.|+..|+.-. ...+++||+||
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH--------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC--------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 54 1223344455567899999999873 145566666666421 23478999999
Q ss_pred CCCcc------------ccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC---------CCCChhhHHHHHhh--c
Q psy5440 692 NRVDV------------LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK---------TDLDRDDLSRKLAA--L 748 (1036)
Q Consensus 692 N~pd~------------LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~---------~~l~~~~l~~~LA~--~ 748 (1036)
|.+.. +.|+|++ |||..|.|++|+.+++..|++.++..+. ..++ +...+.|+. .
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~ 704 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT-DAAKAKVAEEGV 704 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC-HHHHHHHHGGGC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC-HHHHHHHHHhCC
Confidence 97553 7888988 9999999999999999999998875321 1222 333455554 3
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy5440 749 TPGFTGADIANVCNEAAL 766 (1036)
Q Consensus 749 T~G~SgaDL~~LvneAal 766 (1036)
...+..++|+++++.+..
T Consensus 705 ~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp CTTTTTTTHHHHHHHHTH
T ss_pred CCCCCChHHHHHHHHHHH
Confidence 344556777777765543
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=2.6e-15 Score=185.79 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=135.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +++++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 35689999999988887766532 335679999999999999999999986 88999888
Q ss_pred chhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 612 ~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
+ ...|.|....+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|++|
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEeCC
Confidence 8 455788888999999999999999999999 10 023344444443 5679999999
Q ss_pred CCCc-----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC----CCCChhhHHHHHhh-----cCCCCCHHHH
Q psy5440 692 NRVD-----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK----TDLDRDDLSRKLAA-----LTPGFTGADI 757 (1036)
Q Consensus 692 N~pd-----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~----~~l~~~~l~~~LA~-----~T~G~SgaDL 757 (1036)
|..+ .+|++|+| || ..|.|+.|+.+++.+||+.++.... ..++.+ .+..++. .+.++.+.+.
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~-al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTHHH
T ss_pred ChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhcccccCcCCcHH
Confidence 9988 79999999 99 5699999999999999998877532 223332 2333333 3456777888
Q ss_pred HHHHHHHHHHHHHh
Q psy5440 758 ANVCNEAALIAARD 771 (1036)
Q Consensus 758 ~~LvneAal~A~r~ 771 (1036)
..++.+|+..+..+
T Consensus 375 i~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 375 IDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88998887655544
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=1.2e-14 Score=163.00 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=148.8
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC--------------
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP-------------- 606 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp-------------- 606 (1036)
...+|++++|.+++++.|.+.+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 345799999999999988877743 2345678999999999999999999987542
Q ss_pred ----------eEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 607 ----------FITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 607 ----------fi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
++.+++.. ......++.+++.+.. ..+.||+|||+|.+.. ...+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L 139 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNAL 139 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHH
Confidence 22222211 1123456777777653 3468999999998831 345667
Q ss_pred HHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCC
Q psy5440 673 LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGF 752 (1036)
Q Consensus 673 L~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~ 752 (1036)
+..++. ...++++|++||.+..+++++++ |+ ..+.+++|+.++..++++.++......++.+ .+..++..+.|
T Consensus 140 l~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~G- 212 (373)
T 1jr3_A 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG- 212 (373)
T ss_dssp HHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSSS-
T ss_pred HHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCCC-
Confidence 777764 45678999999999999999998 76 6799999999999999998886444334443 35678888876
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 753 TGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 753 SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
+.+++.++++.+...+ ...|+.+++++++
T Consensus 213 ~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 6788888887765332 4568888886654
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.3e-16 Score=172.73 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=115.3
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEechhhhh
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSGSEFLE 617 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~se~~e 617 (1036)
+.|.++..+.|..++... +....|.+++|+||||||||++++++++++ .+.++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 455555555555444332 233468899999999999999999999988 35688999876433
Q ss_pred ----------hhc------cCchhHHHHHHHHh--hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC
Q psy5440 618 ----------MFV------GVGPSRVRDMFSMA--RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF 679 (1036)
Q Consensus 618 ----------~~v------G~~~~~vr~lF~~A--r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~ 679 (1036)
.+. +.....++.+|... ....++||||||+|.+. ..+.+..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 122 23456678888875 45668999999999995 1245666665433
Q ss_pred cCCCCeEEEEecCCCcc----ccHHhhCCCCcc-eEEEecCCChhhHHHHHHHhcCC
Q psy5440 680 NTTTNVVVLAATNRVDV----LDKALLRPGRFD-RQIFVPAPDIKGRASIFKVHLKP 731 (1036)
Q Consensus 680 ~~~~~ViVIaaTN~pd~----LDpALlRpGRFd-r~I~i~~Pd~eeR~~IL~~~L~~ 731 (1036)
....+++||+++|..+. |++++++ ||. +.|.|++++.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 24567999999998764 4555566 886 68999999999999999998864
No 66
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=3.2e-15 Score=163.63 Aligned_cols=207 Identities=19% Similarity=0.210 Sum_probs=143.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEech
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGS 613 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~s 613 (1036)
.....+|++++|++++++.|.+.+.. ...| ++||+||||||||++|+++|+++ +.+++.++++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 34457899999999988887765431 1223 39999999999999999999986 4568899987
Q ss_pred hhhhhhccCchhHHHHHHHHhh--cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 614 EFLEMFVGVGPSRVRDMFSMAR--KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 614 e~~e~~vG~~~~~vr~lF~~Ar--~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
+... .......+..+..... ...+.||+|||+|.+.. ...+.|+..++. ...++++|++|
T Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~ 139 (319)
T 2chq_A 78 DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFILSC 139 (319)
T ss_dssp STTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSS--SSSSEEEEEEE
T ss_pred cccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEe
Confidence 6432 1111222222221111 13478999999999842 234556666653 34678999999
Q ss_pred CCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q psy5440 692 NRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771 (1036)
Q Consensus 692 N~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~ 771 (1036)
|.+..+++++.+ |+. .+.+++|+.+++.+++..++......++.+. ++.++..+.| +.+.+.+++..++.
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-l~~l~~~~~G-~~r~~~~~l~~~~~----- 209 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDG-LEALIYISGG-DFRKAINALQGAAA----- 209 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHH-HHHHHHTTTT-CHHHHHHHHHHHHH-----
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHHHHHHHH-----
Confidence 999999999999 775 7999999999999999998876554455444 4667777765 34555555544332
Q ss_pred cCCcccHHHHHHHH
Q psy5440 772 LHTTIVMKHFEQAI 785 (1036)
Q Consensus 772 ~~~~It~~d~~~Ai 785 (1036)
....|+.+++.+++
T Consensus 210 ~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 210 IGEVVDADTIYQIT 223 (319)
T ss_dssp SSSCBCHHHHHHHT
T ss_pred cCCCCCHHHHHHHH
Confidence 13568888876653
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=3.1e-15 Score=184.96 Aligned_cols=198 Identities=21% Similarity=0.281 Sum_probs=140.2
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcC----CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhh---
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA----KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~----~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~--- 618 (1036)
++|+|++++++.+...+.... .|. ++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 568999999999988776532 122 223369999999999999999999999999999999998764
Q ss_pred --hccCchh-----HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcC---------C
Q psy5440 619 --FVGVGPS-----RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNT---------T 682 (1036)
Q Consensus 619 --~vG~~~~-----~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~---------~ 682 (1036)
..|.... .-..+.+..+...++||||||||.+. ..+++.|+..|+.-.- -
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 1222111 11223444455567999999999873 2466777777763211 1
Q ss_pred CCeEEEEecCCCc-------------------------cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC-----
Q psy5440 683 TNVVVLAATNRVD-------------------------VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----- 732 (1036)
Q Consensus 683 ~~ViVIaaTN~pd-------------------------~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----- 732 (1036)
.+++||+|||.+. .++|+|++ |||..|.|++|+.+++..|++.++..+
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999754 67899998 999999999999999999999987632
Q ss_pred ----CCCCChhhHHHHHhhc--CCCCCHHHHHHHHHHHHHH
Q psy5440 733 ----KTDLDRDDLSRKLAAL--TPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 733 ----~~~l~~~~l~~~LA~~--T~G~SgaDL~~LvneAal~ 767 (1036)
...++ +...+.|+.. ...+..++|.++++.+...
T Consensus 675 ~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 675 QKGVSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HTTEEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HCCcEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 11233 2333455543 2345577888888766544
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=2.3e-15 Score=188.70 Aligned_cols=204 Identities=21% Similarity=0.290 Sum_probs=135.7
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEe
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVS 611 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is 611 (1036)
.-+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|+++ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 3579999999977666655442 1 235679999999999999999999987 88999999
Q ss_pred chhhh--hhhccCchhHHHHHHHHhhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEE
Q psy5440 612 GSEFL--EMFVGVGPSRVRDMFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVL 688 (1036)
Q Consensus 612 ~se~~--e~~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVI 688 (1036)
++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+... +.. ...+.|...++ ...+.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~---~~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAV---DAGNMLKPALA----RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chH---HHHHHHHHHHh----CCCeEEE
Confidence 99887 457788888999999998875 68999999999997543221 111 22333333333 3568899
Q ss_pred EecCCCc----cccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC----CCCCChhhHHHHHhhc-----CCCCCHH
Q psy5440 689 AATNRVD----VLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL----KTDLDRDDLSRKLAAL-----TPGFTGA 755 (1036)
Q Consensus 689 aaTN~pd----~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l----~~~l~~~~l~~~LA~~-----T~G~Sga 755 (1036)
++||.++ .+|++|+| ||+. |.++.|+.+++.+||+.++... ...+. +..+..++.. +..+.+.
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChH
Confidence 9999775 47999999 9986 9999999999999998776532 12233 2333444443 4567788
Q ss_pred HHHHHHHHHHHHHHHh
Q psy5440 756 DIANVCNEAALIAARD 771 (1036)
Q Consensus 756 DL~~LvneAal~A~r~ 771 (1036)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8889999887665543
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=1.3e-14 Score=159.25 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=143.8
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSEF 615 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se~ 615 (1036)
...+|++++|.+++++.|.+.+.. .+.|. +||+||||||||++|+++|+++ +.+++.+++++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 456799999999999988777532 23344 9999999999999999999986 456888887653
Q ss_pred hhhhccCchhHHHHHHHHhh-------cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEE
Q psy5440 616 LEMFVGVGPSRVRDMFSMAR-------KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVL 688 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVI 688 (1036)
. +...+++++.... ...++||+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMEL--YSNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TTTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhc--cCCCceEE
Confidence 2 2345566655443 23478999999999842 234445555553 34578888
Q ss_pred EecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy5440 689 AATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIA 768 (1036)
Q Consensus 689 aaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A 768 (1036)
.+||.+..+++++++ |+. .+.+++|+.+++.++++.++......++.+ .+..++..+.| +.+.+.+++..++..
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~~~~- 215 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQSTVAG- 215 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHH-
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc-
Confidence 899999999999998 775 799999999999999998876433334443 44677777766 445555555544421
Q ss_pred HHhcCCcccHHHHHHHHH
Q psy5440 769 ARDLHTTIVMKHFEQAIE 786 (1036)
Q Consensus 769 ~r~~~~~It~~d~~~Aie 786 (1036)
...|+.+++.+++.
T Consensus 216 ----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 ----HGLVNADNVFKIVD 229 (323)
T ss_dssp ----HSSBCHHHHHHHHT
T ss_pred ----CCCcCHHHHHHHHC
Confidence 24688888776653
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=1.3e-15 Score=152.76 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=109.7
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----------CCCeEEEec
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----------NVPFITVSG 612 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----------gvpfi~Is~ 612 (1036)
.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 46999999998766665543 22 235689999999999999999999987 788999998
Q ss_pred hhhhhh--hccCchhHHHHHHHHhhcC-CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 613 SEFLEM--FVGVGPSRVRDMFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 613 se~~e~--~vG~~~~~vr~lF~~Ar~~-aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
..+... +.+.....++.++..+... .|+||||||+|.+...+... .... ...+.|+..++ ..++++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~---~~~~~l~~~~~----~~~~~ii~ 157 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGAL---DAGNILKPMLA----RGELRCIG 157 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSC---CTHHHHHHHHH----TTCSCEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccch---HHHHHHHHHHh----cCCeeEEE
Confidence 877632 3444455677777777655 68999999999997543211 1112 23333333333 35788999
Q ss_pred ecCCCc-----cccHHhhCCCCcceEEEecCCC
Q psy5440 690 ATNRVD-----VLDKALLRPGRFDRQIFVPAPD 717 (1036)
Q Consensus 690 aTN~pd-----~LDpALlRpGRFdr~I~i~~Pd 717 (1036)
+||.++ .+|+++++ ||+. |.++.|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 999776 68999999 9985 9998886
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=2.6e-15 Score=177.30 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=137.0
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEech-----hhhhh
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGS-----EFLEM 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~s-----e~~e~ 618 (1036)
..|+|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..++|. +++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3488999888776544322 34799999999999999999999884 466666653 22222
Q ss_pred hccCchhHHHHHHHHhhcC---CCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-------c-CCCCeEE
Q psy5440 619 FVGVGPSRVRDMFSMARKH---APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------N-TTTNVVV 687 (1036)
Q Consensus 619 ~vG~~~~~vr~lF~~Ar~~---aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------~-~~~~ViV 687 (1036)
+.+.... -...|..+... .++|||||||+.+. ..+.+.|+..|+.. . ..+..++
T Consensus 88 ~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 88 LSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred ccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 2111111 12334333332 46899999998652 24567777777521 1 1112246
Q ss_pred EEecCCCc---cccHHhhCCCCcceEEEecCCCh-hhHHHHHHHhcCCCC-----------------------CCCChhh
Q psy5440 688 LAATNRVD---VLDKALLRPGRFDRQIFVPAPDI-KGRASIFKVHLKPLK-----------------------TDLDRDD 740 (1036)
Q Consensus 688 IaaTN~pd---~LDpALlRpGRFdr~I~i~~Pd~-eeR~~IL~~~L~~l~-----------------------~~l~~~~ 740 (1036)
|+|||.+. .+.+++++ ||...+.+++|+. +++..|++.+..... ..++ +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 77778533 24469999 9999999999987 778999987753211 1122 22
Q ss_pred HHHHHhhc---------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 741 LSRKLAAL---------TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 741 l~~~LA~~---------T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
+.+.++.. ..|.|.+.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 23333332 3588999999999999999999999999999887 544443
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=2.8e-14 Score=156.75 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=141.6
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC-----CCeEEEechh
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN-----VPFITVSGSE 614 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag-----vpfi~Is~se 614 (1036)
....+|++++|++++++.|...+.. .+.| ++||+||||||||++|+++|+++. .+++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 3456799999999999998877653 1223 499999999999999999999863 3578888876
Q ss_pred hhhhhccCchhHHHHHHHHh--hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 615 FLEMFVGVGPSRVRDMFSMA--RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 615 ~~e~~vG~~~~~vr~lF~~A--r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
.... ......+.+..... ....++||+|||+|.+.. ...+.|+..|+. ...++++|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 4321 11111222211111 114478999999998832 234556666653 345788899999
Q ss_pred CCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q psy5440 693 RVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772 (1036)
Q Consensus 693 ~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~ 772 (1036)
.++.+++++.+ |+. .+.+++|+.++...+++.++......++.+ .++.++..+.| +.+.+.+++..++. .
T Consensus 149 ~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~~-----~ 218 (327)
T 1iqp_A 149 YSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA-----L 218 (327)
T ss_dssp CGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHHT-----T
T ss_pred CccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHh-----c
Confidence 99999999998 776 789999999999999998887555445543 44677777765 45556666654432 2
Q ss_pred CCcccHHHHHHHH
Q psy5440 773 HTTIVMKHFEQAI 785 (1036)
Q Consensus 773 ~~~It~~d~~~Ai 785 (1036)
...|+.+++..++
T Consensus 219 ~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 219 DKKITDENVFMVA 231 (327)
T ss_dssp CSEECHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3467777776543
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.55 E-value=3e-14 Score=153.63 Aligned_cols=194 Identities=21% Similarity=0.224 Sum_probs=114.2
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhhhh-
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFLEM- 618 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~e~- 618 (1036)
.+|++++|.+.+...+.+.+..+. ..+.++||+||||||||++|++++..+. .||+.++|+.+.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 579999999999999888776642 2346899999999999999999999874 79999999986432
Q ss_pred ----hccCchhH-------HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC--------
Q psy5440 619 ----FVGVGPSR-------VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-------- 679 (1036)
Q Consensus 619 ----~vG~~~~~-------vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-------- 679 (1036)
..|..... ....|..+ .+++|||||||.+.. ...+.|+..|+.-
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 11211100 11223333 347999999998842 2234444444421
Q ss_pred -cCCCCeEEEEecCCC-------ccccHHhhCCCCcceEEEecCCChhhH----HHHHHHhcCC----CCC----CCChh
Q psy5440 680 -NTTTNVVVLAATNRV-------DVLDKALLRPGRFDRQIFVPAPDIKGR----ASIFKVHLKP----LKT----DLDRD 739 (1036)
Q Consensus 680 -~~~~~ViVIaaTN~p-------d~LDpALlRpGRFdr~I~i~~Pd~eeR----~~IL~~~L~~----l~~----~l~~~ 739 (1036)
....++.||+|||.+ ..++++|.+ ||.. +.+..|...+| ..+++.++.. ... .++.+
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 123468999999974 246788888 8863 34445555544 3344444321 111 23333
Q ss_pred hHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy5440 740 DLSRKLAALTPGFTGADIANVCNEAALI 767 (1036)
Q Consensus 740 ~l~~~LA~~T~G~SgaDL~~LvneAal~ 767 (1036)
.++.|....-..+.++|.++++.++..
T Consensus 213 -a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 213 -ARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp -HHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 334454443223456777777766544
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.3e-15 Score=181.49 Aligned_cols=224 Identities=19% Similarity=0.138 Sum_probs=141.6
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE----echhhhhh---
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV----SGSEFLEM--- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I----s~se~~e~--- 618 (1036)
..|+|++++|+.+.-.+.. ..+........+...++||+||||||||+||+++|..++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~-g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG-GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC-CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhC-CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 3589999988776322110 000111111223344899999999999999999999987665542 22332221
Q ss_pred --hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc-----------CCCCe
Q psy5440 619 --FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN-----------TTTNV 685 (1036)
Q Consensus 619 --~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~-----------~~~~V 685 (1036)
+.|.... ....+..| ..+||||||||.+.+ ...+.|+..|+.-. .+.++
T Consensus 374 ~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCSE-EECHHHHH---SSSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccccccccc-cCCeeEec---CCCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1111000 01122333 246999999998732 24455666665321 13578
Q ss_pred EEEEecCCCc-------------cccHHhhCCCCcce-EEEecCCChhhHHHHHHHhcCCCC-----CCCChhhH-----
Q psy5440 686 VVLAATNRVD-------------VLDKALLRPGRFDR-QIFVPAPDIKGRASIFKVHLKPLK-----TDLDRDDL----- 741 (1036)
Q Consensus 686 iVIaaTN~pd-------------~LDpALlRpGRFdr-~I~i~~Pd~eeR~~IL~~~L~~l~-----~~l~~~~l----- 741 (1036)
.||||||.+. .|+++|++ |||. .+..+.|+.+ ...|++..+.... ..++.+.+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 9999999886 89999999 9985 4556778877 8888877665321 11111111
Q ss_pred --------------HHHHhhc--------------CCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcC
Q psy5440 742 --------------SRKLAAL--------------TPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 742 --------------~~~LA~~--------------T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~g 791 (1036)
.+.|... +.+.|.+.+.++++.|...|..+.+..|+.+|+.+|+.-+...
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1122221 3578999999999999999999999999999999999765443
No 75
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.9e-15 Score=168.58 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=65.5
Q ss_pred cCCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 134 NSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 134 ~~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
..+.|+|+|+||+|++++|++|+|+|.+ |++|+.|+++|+++||||||||| ||||||+|+|+|++. .|+..
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~f~~v 213 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--KFIRV 213 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--EEEEE
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--CceEE
Confidence 3567899999999999999999999999 99999999999999999999999 999999999999994 45543
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=4.6e-14 Score=176.93 Aligned_cols=203 Identities=21% Similarity=0.269 Sum_probs=139.2
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh---
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~--- 618 (1036)
+++|+|++++++.+...+...+..-.. ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 578999999999999888764211000 01122479999999999999999999988 789999999987653
Q ss_pred ---------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------
Q psy5440 619 ---------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------- 680 (1036)
Q Consensus 619 ---------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------- 680 (1036)
|+|... ...+....+...++||||||||.+. ..+++.|+..|+.-.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCCE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCEe
Confidence 122211 1233344445556999999999872 256777777777421
Q ss_pred CCCCeEEEEecCCC--------------------------ccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCC--
Q psy5440 681 TTTNVVVLAATNRV--------------------------DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL-- 732 (1036)
Q Consensus 681 ~~~~ViVIaaTN~p--------------------------d~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l-- 732 (1036)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++..+
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 11378899999972 235677777 999999999999999999999887622
Q ss_pred -------CCCCChhhHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Q psy5440 733 -------KTDLDRDDLSRKLAALTP--GFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 733 -------~~~l~~~~l~~~LA~~T~--G~SgaDL~~LvneAal~A~ 769 (1036)
...++ +...+.|+...- .+..++|.++|+.+...+.
T Consensus 776 ~~~~~~~~~~~~-~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 776 RLAEKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHTTTCEEEEC-HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHhCCceEEEC-HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11233 334455665443 4567888888887665443
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-14 Score=167.53 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=70.0
Q ss_pred ccccccEEec-CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 125 VMESTAKLIN-SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 125 fGKSkak~~~-~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
...+.+..+. ++.++|+|+||+|++++|++|+|.|++ |++|+.|+++|+++||||||||| |||+||+|||+|++.
T Consensus 163 ~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 163 DADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred ccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 3445555443 677999999999999999999999999 99999999999999999999999 999999999999994
Q ss_pred ceeeeee
Q psy5440 200 LERFLLH 206 (1036)
Q Consensus 200 ~~~~~~~ 206 (1036)
.|+..
T Consensus 243 --~fi~v 247 (437)
T 4b4t_I 243 --TFLRI 247 (437)
T ss_dssp --EEEEE
T ss_pred --CEEEE
Confidence 45543
No 78
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.3e-14 Score=168.46 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=65.1
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
++.++|||+||+|++++|++|+|+|++ |++|+.|+++|+++||||||||| |||+||+|||+|++. .|+..
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~fi~v 274 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--TFIRV 274 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--EEEEE
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--CeEEE
Confidence 467899999999999999999999999 99999999999999999999999 999999999999994 45443
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=2.5e-13 Score=152.12 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=136.1
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC-----CeEEEechhh
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-----PFITVSGSEF 615 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-----pfi~Is~se~ 615 (1036)
...+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+.. .++.+++++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 456799999999998888766642 23344 999999999999999999998643 3666766552
Q ss_pred hhhhccCchhHHHHHHHHhhc------CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 616 LEMFVGVGPSRVRDMFSMARK------HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 616 ~e~~vG~~~~~vr~lF~~Ar~------~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
. +...+++.+..... ..+.|++|||+|.+.. ...+.|+..|+. ....+.+|.
T Consensus 88 ~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il 145 (340)
T 1sxj_C 88 R------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIER--YTKNTRFCV 145 (340)
T ss_dssp C------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEE
T ss_pred c------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhc--CCCCeEEEE
Confidence 1 22344444433221 2368999999998832 234556666653 345677888
Q ss_pred ecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q psy5440 690 ATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769 (1036)
Q Consensus 690 aTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~ 769 (1036)
+||.+..+.+++++ |+. .+.+.+++.++..+++...+......++.+ .++.++..+.| ..+.+.++++.++..+.
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTTTTTTC
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 89999999999999 875 688999999999999988875444335443 44667776654 23333344433322211
Q ss_pred HhcCCcccHHHHHHHH
Q psy5440 770 RDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 770 r~~~~~It~~d~~~Ai 785 (1036)
+.+...|+.+++.+++
T Consensus 221 ~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 221 NPDEDEISDDVIYECC 236 (340)
T ss_dssp SSSCCCBCHHHHHHHT
T ss_pred CcccccccHHHHHHHh
Confidence 1112358877766543
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.49 E-value=1.9e-13 Score=151.60 Aligned_cols=190 Identities=20% Similarity=0.317 Sum_probs=117.1
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM---- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~---- 618 (1036)
++++|.+.+.+.+.+.+..+. ..+.++||+||||||||++|++++... +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999999988887752 345689999999999999999999955 689999999876432
Q ss_pred -hccCch-------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc---------C
Q psy5440 619 -FVGVGP-------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN---------T 681 (1036)
Q Consensus 619 -~vG~~~-------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~---------~ 681 (1036)
..|... ......|+.|. +++|||||||.+.. .....|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccc
Confidence 122110 01234455553 36999999999832 23344555554321 1
Q ss_pred CCCeEEEEecCCCc-------cccHHhhCCCCcceEEEecCCChhh----HHHHHHHhcCCC----C---CCCChhhHHH
Q psy5440 682 TTNVVVLAATNRVD-------VLDKALLRPGRFDRQIFVPAPDIKG----RASIFKVHLKPL----K---TDLDRDDLSR 743 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd-------~LDpALlRpGRFdr~I~i~~Pd~ee----R~~IL~~~L~~l----~---~~l~~~~l~~ 743 (1036)
..++.||+|||.+- .+++.|.. ||. .+.+..|...+ ...+++.++... . ..++. ..++
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~-~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP-QAMD 210 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH-HHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH-HHHH
Confidence 34689999999751 34556666 664 34444455444 444555554321 1 12332 3334
Q ss_pred HHhhcC-CCCCHHHHHHHHHHHHHH
Q psy5440 744 KLAALT-PGFTGADIANVCNEAALI 767 (1036)
Q Consensus 744 ~LA~~T-~G~SgaDL~~LvneAal~ 767 (1036)
.|.... +| +.++|.+++..|+..
T Consensus 211 ~L~~~~wpG-nvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 211 LLIHYDWPG-NIRELENAIERAVVL 234 (304)
T ss_dssp HHHHCCCSS-HHHHHHHHHHHHHHH
T ss_pred HHHcCCCCC-CHHHHHHHHHHHHHh
Confidence 455544 33 456666666665543
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=3.6e-14 Score=140.12 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=87.7
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccC
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGV 622 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~ 622 (1036)
.+++|.+++.+.+.+.+..+. ..+.++||+||||||||++|++++..+ +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 368999999999988877652 335679999999999999999999987 78999 999987553
Q ss_pred chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhh
Q psy5440 623 GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALL 702 (1036)
Q Consensus 623 ~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALl 702 (1036)
.....+|+.+. .++|||||||.+.. .....|+..|. ....++.+|+|||.+- ..+.
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~--------------~~q~~Ll~~l~--~~~~~~~~I~~t~~~~---~~~~ 121 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR--------------EQQYHLVQLQS--QEHRPFRLIGIGDTSL---VELA 121 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH--------------HHHHHHHHHHH--SSSCSSCEEEEESSCH---HHHH
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH--------------HHHHHHHHHHh--hcCCCEEEEEECCcCH---HHHH
Confidence 34556677664 35999999999842 22334444443 2345688999999753 2344
Q ss_pred CCCCcc
Q psy5440 703 RPGRFD 708 (1036)
Q Consensus 703 RpGRFd 708 (1036)
..|+|+
T Consensus 122 ~~~~~~ 127 (145)
T 3n70_A 122 ASNHII 127 (145)
T ss_dssp HHSCCC
T ss_pred HcCCCC
Confidence 444553
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.47 E-value=9.5e-13 Score=149.42 Aligned_cols=230 Identities=13% Similarity=0.085 Sum_probs=152.4
Q ss_pred ccccccccChHHHHHHHHHH-HHhcCchhHhhhcCCCCceeEE--eCCCCCcHHHHHHHHHHhc---------CCCeEEE
Q psy5440 543 VRFKDVAGCEEAKVEIMEFV-NFLKNPQQYIDLGAKIPKGAML--TGPPGTGKTLLAKATAGEA---------NVPFITV 610 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV-~~Lk~p~~~~~lG~~~pkGvLL--~GPPGTGKTlLAkAIA~ea---------gvpfi~I 610 (1036)
...++++|.++..+.|.+.+ ...... . ...+..++| +||||||||+||+++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~-----~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG-----A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS-----S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC-----C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999888888877 553211 0 023567899 9999999999999999876 5678888
Q ss_pred echhh------hhhh---c-------cCchhH-HHHHHHHhh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHH
Q psy5440 611 SGSEF------LEMF---V-------GVGPSR-VRDMFSMAR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQL 672 (1036)
Q Consensus 611 s~se~------~e~~---v-------G~~~~~-vr~lF~~Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqL 672 (1036)
+|... .... . +..... ...+..... ...|+||+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 87432 1110 1 111122 222222222 35589999999999953210 012445555
Q ss_pred HHHhhcCcC-C--CCeEEEEecCCCc---ccc---HHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCC-CCCChhhHH
Q psy5440 673 LVEMDGFNT-T--TNVVVLAATNRVD---VLD---KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLK-TDLDRDDLS 742 (1036)
Q Consensus 673 L~emDg~~~-~--~~ViVIaaTN~pd---~LD---pALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~-~~l~~~~l~ 742 (1036)
+..++.... . .++.||++||.++ .++ +.+.+ ||...+.+++++.++..+++..++.... .....+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555543321 2 6788998888665 345 66777 5666699999999999999987654211 111224455
Q ss_pred HHHhhcCC------CCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q psy5440 743 RKLAALTP------GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVV 789 (1036)
Q Consensus 743 ~~LA~~T~------G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi 789 (1036)
..++..+. | .++.+.++++.|...|..+....++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 67888887 6 4678889999888888887788899999998887643
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=3.9e-13 Score=150.25 Aligned_cols=191 Identities=15% Similarity=0.202 Sum_probs=127.0
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC--------------
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV-------------- 605 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv-------------- 605 (1036)
....+|++++|++++++.|.+.+. . ..+.|. +||+||+|||||++++++|+++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 345679999999998887765541 1 123455 999999999999999999996421
Q ss_pred ---------------CeEEEechhhhhhhccCchhHHHHHHHHhhc--------------CCCeEEEEcCchhhhhcCCC
Q psy5440 606 ---------------PFITVSGSEFLEMFVGVGPSRVRDMFSMARK--------------HAPCILFIDEIDAVGRKRGG 656 (1036)
Q Consensus 606 ---------------pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~--------------~aP~ILfIDEIDaL~~~r~~ 656 (1036)
+++.+++++.. ......+++.++.+.. ..|.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 12223222110 0011135555554422 2567999999998621
Q ss_pred CCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCC
Q psy5440 657 RNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDL 736 (1036)
Q Consensus 657 ~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l 736 (1036)
...+.|+..|+.. ..++.+|.+||.++.+.+++++ |+ ..+.+++|+.+++.++++..+......+
T Consensus 149 ----------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 149 ----------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ----------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ----------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 2345555555543 3468889999999999999999 88 7799999999999999998886444334
Q ss_pred ChhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy5440 737 DRDDLSRKLAALTPGFTGADIANVCNEAA 765 (1036)
Q Consensus 737 ~~~~l~~~LA~~T~G~SgaDL~~LvneAa 765 (1036)
+.+..+..+++.+.| +.+++.++++.++
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 413345677777765 4566666665544
No 84
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.47 E-value=3.5e-14 Score=167.57 Aligned_cols=83 Identities=37% Similarity=0.564 Sum_probs=68.3
Q ss_pred CCCCCCCCccccccEEecCCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHH
Q psy5440 117 RGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRM 193 (1036)
Q Consensus 117 gggg~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~ 193 (1036)
|+++++|+||||+++++.+. ++++|+||+|++++|++|++++.++++|..|..+|.++|+||||+|| |||+||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 6 GPSDSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ------------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 34456789999999999877 99999999999999999999999999999999999999999999999 999999999
Q ss_pred Hhhhccc
Q psy5440 194 LCTAKKL 200 (1036)
Q Consensus 194 a~e~~~~ 200 (1036)
|++++..
T Consensus 85 a~~~~~~ 91 (499)
T 2dhr_A 85 AGEARVP 91 (499)
T ss_dssp HHHTTCC
T ss_pred HHHhCCC
Confidence 9999743
No 85
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3e-14 Score=165.32 Aligned_cols=66 Identities=27% Similarity=0.421 Sum_probs=63.0
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.++|+|+||+|++++|++|+|+|++ |++|+.|+++|+++||||||||| |||+||+|||++++..
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 357899999999999999999999999 99999999999999999999999 9999999999999954
No 86
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.9e-14 Score=163.38 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=64.3
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
++.+.|||+||+|++++|++|+|.|.+ |++|+.|+++|+++||||||||| |||+||+|+|++++. .|+..
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--TFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--EEEEE
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--CEEEE
Confidence 457899999999999999999998887 99999999999999999999999 999999999999994 44443
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=9.4e-14 Score=160.84 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=62.9
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.++|+|+||+|++++|++|+|.|++ |++|+.|.++|+++||||||||| |||+||+|+|++++..
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999999987 99999999999999999999999 9999999999999954
No 88
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=5.5e-13 Score=161.11 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=134.8
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCC---eEEEechhhh-
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVP---FITVSGSEFL- 616 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvp---fi~Is~se~~- 616 (1036)
...+|++++|++.+++.+...+.. ...++|+||||||||+||+++|+.+... .+.+.+....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 346799999999988777655432 2479999999999999999999987432 2222111100
Q ss_pred -----------------h--------------------------------------hhccCchhHHHHHHHHh-------
Q psy5440 617 -----------------E--------------------------------------MFVGVGPSRVRDMFSMA------- 634 (1036)
Q Consensus 617 -----------------e--------------------------------------~~vG~~~~~vr~lF~~A------- 634 (1036)
+ .++.........+|...
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 0 00000011122233211
Q ss_pred ----------------hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-------------------
Q psy5440 635 ----------------RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF------------------- 679 (1036)
Q Consensus 635 ----------------r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~------------------- 679 (1036)
....+.+|||||+|.+.+ ...+.|+..|+.-
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~--------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSL--------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGSCH--------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred CCccccccccccCceeeecCCCEEEEechhhCCH--------------HHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 112456999999998721 2334454444411
Q ss_pred cCCCCeEEEEecCCC--ccccHHhhCCCCcc---eEEEecCC---ChhhHHHHHHHhcCC-----CCCCCChhhHHHHHh
Q psy5440 680 NTTTNVVVLAATNRV--DVLDKALLRPGRFD---RQIFVPAP---DIKGRASIFKVHLKP-----LKTDLDRDDLSRKLA 746 (1036)
Q Consensus 680 ~~~~~ViVIaaTN~p--d~LDpALlRpGRFd---r~I~i~~P---d~eeR~~IL~~~L~~-----l~~~l~~~~l~~~LA 746 (1036)
..+.++.||+|||+. ..++++|++ ||+ ..+.++.. +.+....+++...+. ....++.+.+...+.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 112478899999987 689999999 986 45655432 234455555443321 112355554433332
Q ss_pred hc--CCCC------CHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 747 AL--TPGF------TGADIANVCNEAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 747 ~~--T~G~------SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aier 787 (1036)
.. ..|. +.+++.++++.|...|..+.+..|+.+|+.+|+.+
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 22 2553 68999999999998988888999999999999965
No 89
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.41 E-value=2.4e-13 Score=134.06 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=90.1
Q ss_pred ccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhH
Q psy5440 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSR 626 (1036)
Q Consensus 547 DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~ 626 (1036)
+++|.+++.+++.+.+..+. ..+.++||+||||||||++|++++..+. ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58999999999988887642 2356799999999999999999999988 99999999876543
Q ss_pred HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC-cc----ccHHh
Q psy5440 627 VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV-DV----LDKAL 701 (1036)
Q Consensus 627 vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p-d~----LDpAL 701 (1036)
...+|+.+. +++|||||||.+.. .....+.+++... ...++.+|+|||.+ +. +++.|
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~----~~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKA----ERCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHH----TTTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhC----CCCCEEEEEecCCCHHHHHhCccHHH
Confidence 456677664 46999999999842 2222333333332 24578899999864 22 44455
Q ss_pred hCCCCcc-eEEEecC
Q psy5440 702 LRPGRFD-RQIFVPA 715 (1036)
Q Consensus 702 lRpGRFd-r~I~i~~ 715 (1036)
.. ||. ..|.+|+
T Consensus 129 ~~--rl~~~~i~lPp 141 (143)
T 3co5_A 129 AG--LFSESVVRIPP 141 (143)
T ss_dssp HH--HSSSEEEEECC
T ss_pred HH--HhcCcEEeCCC
Confidence 54 442 3455543
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.37 E-value=5.2e-13 Score=174.85 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=111.4
Q ss_pred CCCCccccccccChHHHHHHHHHHHH-hcC----------chhHhh------hcCC----------CCce--eEEeCCCC
Q psy5440 539 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKN----------PQQYID------LGAK----------IPKG--AMLTGPPG 589 (1036)
Q Consensus 539 ~~~~v~F~DV~G~eeaK~eL~eiV~~-Lk~----------p~~~~~------lG~~----------~pkG--vLL~GPPG 589 (1036)
....++|+||.|.+++|+++.+.+.. ++. ++.|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 34569999999999999999988877 422 456655 3333 6777 99999999
Q ss_pred CcHHHHHHHHHHhc---CCCeEEEechhhh------------hhhccC----chhHHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 590 TGKTLLAKATAGEA---NVPFITVSGSEFL------------EMFVGV----GPSRVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 590 TGKTlLAkAIA~ea---gvpfi~Is~se~~------------e~~vG~----~~~~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
||||+||+++|.+. +-|.+.|+..+.. +.+++. ++..++.+|..|+..+||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999877 5677777766543 445566 7889999999999999999999999999
Q ss_pred hhcCC---CCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 651 GRKRG---GRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 651 ~~~r~---~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
.+.+. ........-..+.++|+|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98742 211111234456899999999998888889888 77753
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=4.4e-11 Score=134.00 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=114.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCe------------------------EEEechhhhhhhccCchhHHHHHHH
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPF------------------------ITVSGSEFLEMFVGVGPSRVRDMFS 632 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpf------------------------i~Is~se~~e~~vG~~~~~vr~lF~ 632 (1036)
+.|..+||+||||||||++|+++|+.+.++. +.++..+ .-...+...++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 5678899999999999999999999876432 2222210 001123456788887
Q ss_pred Hhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcc
Q psy5440 633 MARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFD 708 (1036)
Q Consensus 633 ~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFd 708 (1036)
.+.. ....|++|||+|.+.. ...|.||..|+. .+.++++|.+||.++.|.+++++ |+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc- 159 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC- 159 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-
T ss_pred HHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-
Confidence 7653 2358999999999832 356788888873 45678999999999999999999 77
Q ss_pred eEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHH
Q psy5440 709 RQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEA 764 (1036)
Q Consensus 709 r~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneA 764 (1036)
..+.+++|+.++..++++... .++.+ .+..+++.+.| +.+.+.+++..+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~-----~~~~~-~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV-----TMSQD-ALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC-----CCCHH-HHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeeCCCCCHHHHHHHHHHhc-----CCCHH-HHHHHHHHcCC-CHHHHHHHhccc
Confidence 469999999999999998876 23333 34567777765 445555555443
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.18 E-value=1.1e-10 Score=159.16 Aligned_cols=137 Identities=22% Similarity=0.334 Sum_probs=99.4
Q ss_pred CceeEEeCCCCCcHHHHHH-HHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhh---------------cCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAK-ATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMAR---------------KHAPCIL 642 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAk-AIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar---------------~~aP~IL 642 (1036)
.+++||+||||||||++|+ +++...+.+++.++++...+ ...+...++..- ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 5789999999999999995 55555578888888876532 334555554321 1234899
Q ss_pred EEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCC--------CCeEEEEecCCCc-----cccHHhhCCCCcce
Q psy5440 643 FIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT--------TNVVVLAATNRVD-----VLDKALLRPGRFDR 709 (1036)
Q Consensus 643 fIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~--------~~ViVIaaTN~pd-----~LDpALlRpGRFdr 709 (1036)
||||||.....+ .+.....+.+.|+++ ..++... .++.+|||||+|. .|+++|+| || .
T Consensus 1341 FiDEinmp~~d~-----yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDK-----YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCS-----SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eecccccccccc-----cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 999999743322 122345567777763 3333221 3689999999994 89999999 89 7
Q ss_pred EEEecCCChhhHHHHHHHhcC
Q psy5440 710 QIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 710 ~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
.|.++.|+.+++..|+..++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999998875
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=2.1e-10 Score=127.44 Aligned_cols=142 Identities=10% Similarity=0.126 Sum_probs=106.2
Q ss_pred cChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc------CCCeEEEechhhhhhhccCc
Q psy5440 550 GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA------NVPFITVSGSEFLEMFVGVG 623 (1036)
Q Consensus 550 G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea------gvpfi~Is~se~~e~~vG~~ 623 (1036)
|++++.+.|...+.. | + +..+||+||||+|||++|+++|+.+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 566777777665533 1 2 3478999999999999999999864 34667776542 0123
Q ss_pred hhHHHHHHHHhhcCC----CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccH
Q psy5440 624 PSRVRDMFSMARKHA----PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDK 699 (1036)
Q Consensus 624 ~~~vr~lF~~Ar~~a----P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDp 699 (1036)
...+|++++.+.... ..|++|||+|.+.. ...|.||..|+. .+.++++|.+||.+..|.|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 456888888876432 37999999999832 346788888873 5568888888899999999
Q ss_pred HhhCCCCcceEEEecCCChhhHHHHHHHhc
Q psy5440 700 ALLRPGRFDRQIFVPAPDIKGRASIFKVHL 729 (1036)
Q Consensus 700 ALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L 729 (1036)
++++ | .+.+++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 78999999999999998877
No 94
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.16 E-value=2.7e-11 Score=142.33 Aligned_cols=71 Identities=38% Similarity=0.600 Sum_probs=64.6
Q ss_pred cEEecCC-CCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 130 AKLINSS-DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 130 ak~~~~~-~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
||++.++ .++++|+||+|++++|++|++++.|+++|++|.++|+++|+||||+|| |||+||||+|++++..
T Consensus 2 a~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 2 ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp ---CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CceeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 5677766 789999999999999999999999999999999999999999999999 9999999999999843
No 95
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=99.10 E-value=2.9e-10 Score=106.07 Aligned_cols=83 Identities=54% Similarity=0.973 Sum_probs=73.7
Q ss_pred ceeeeHHHHHHHHhhCCceeEEEEEcCeEEEEEEcCCCCCCCcceEEeecCCcchHHHHHHHHHHhcCCCCCCCcceeEe
Q psy5440 420 YKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPANYLPVIYK 499 (1036)
Q Consensus 420 ~~~i~~~~f~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 499 (1036)
.++|||++|.++||++|.|++|+|+++..++|.+.++.......+++|++|+++.|++.|+.+|.++++.+.++||+.|.
T Consensus 15 ~~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~aQ~el~i~~~~~ipV~Y~ 94 (99)
T 2lna_A 15 GREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYI 94 (99)
T ss_dssp SEECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHHHHHHTTCCTTTCCCEEEC
T ss_pred CcccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHHHHHHcCCCcccccCeEEe
Confidence 35999999997799999999999999899999999887543345679999999999999999999999999999999997
Q ss_pred ccc
Q psy5440 500 TEI 502 (1036)
Q Consensus 500 ~~~ 502 (1036)
.+.
T Consensus 95 ~e~ 97 (99)
T 2lna_A 95 AES 97 (99)
T ss_dssp CCT
T ss_pred ecC
Confidence 654
No 96
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.7e-10 Score=102.56 Aligned_cols=75 Identities=35% Similarity=0.641 Sum_probs=67.7
Q ss_pred cCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Q psy5440 714 PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVA 790 (1036)
Q Consensus 714 ~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~ 790 (1036)
|+||.++|.+||+.|++... ++.+..+..||..|.||||+||.++|++|++.|+++....|+.+||..|+.+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~--~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE--ECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999876 3344556789999999999999999999999999999999999999999999865
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.09 E-value=6.4e-10 Score=127.37 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=121.2
Q ss_pred ccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh---
Q psy5440 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM--- 618 (1036)
Q Consensus 545 F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~--- 618 (1036)
+.+++|.+...+++.+.+..+.. ....+||+|++|||||++|++++... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 66789999888888887777532 23468999999999999999999866 479999999876432
Q ss_pred ----------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhh--cC----cCC
Q psy5440 619 ----------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMD--GF----NTT 682 (1036)
Q Consensus 619 ----------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emD--g~----~~~ 682 (1036)
|.|.... ...+|+.|.. .+||||||+.+.. .....|-++|.+-. .. ...
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 1122111 2345666654 4999999999832 22233333333211 01 112
Q ss_pred CCeEEEEecCCCccccHHhhCCCCcce-------EEEecCCChhhH----HHHHHHhcCC----CC---CCCChhhHHHH
Q psy5440 683 TNVVVLAATNRVDVLDKALLRPGRFDR-------QIFVPAPDIKGR----ASIFKVHLKP----LK---TDLDRDDLSRK 744 (1036)
Q Consensus 683 ~~ViVIaaTN~pd~LDpALlRpGRFdr-------~I~i~~Pd~eeR----~~IL~~~L~~----l~---~~l~~~~l~~~ 744 (1036)
.++.||+|||..- ..+.+.|+|.. .+.+..|...+| ..++.+++.. .. ..++.+. .+.
T Consensus 271 ~~~rii~at~~~l---~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a-~~~ 346 (387)
T 1ny5_A 271 VNVRILAATNRNI---KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSA-QEL 346 (387)
T ss_dssp CCCEEEEEESSCH---HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHH-HHH
T ss_pred ccEEEEEeCCCCH---HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHH-HHH
Confidence 3689999999753 24444455532 234555666555 3333444321 11 1133333 233
Q ss_pred HhhcC-CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Q psy5440 745 LAALT-PGFTGADIANVCNEAALIAARDLHTTIVMKHFEQ 783 (1036)
Q Consensus 745 LA~~T-~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~ 783 (1036)
|.... +| +-++|++++..|++.+ ....|+.+|+..
T Consensus 347 l~~~~wpG-NvreL~~~i~~~~~~~---~~~~i~~~~l~~ 382 (387)
T 1ny5_A 347 LLSYPWYG-NVRELKNVIERAVLFS---EGKFIDRGELSC 382 (387)
T ss_dssp HHHSCCTT-HHHHHHHHHHHHHHHC---CSSEECHHHHHH
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHhC---CCCcCcHHHCcH
Confidence 44333 32 3467777777766543 234677776643
No 98
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.08 E-value=1.8e-10 Score=104.82 Aligned_cols=77 Identities=32% Similarity=0.575 Sum_probs=68.1
Q ss_pred ecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcC
Q psy5440 713 VPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAG 791 (1036)
Q Consensus 713 i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~g 791 (1036)
-.+||.++|.+||+.+++... ++.+..+..||+.|.||||+||.++|++|++.|+++....|+++||..|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~--l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSE--ECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 468999999999999999776 33344567899999999999999999999999999999999999999999998654
No 99
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.06 E-value=2.4e-10 Score=104.34 Aligned_cols=79 Identities=33% Similarity=0.605 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCccccc
Q psy5440 717 DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKT 796 (1036)
Q Consensus 717 d~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gle~~~ 796 (1036)
|.++|.+||+.|+++.. ++.+..+..||+.|+||||+||.++|++|++.|+++....|+++||..|+.++..|.++++
T Consensus 2 d~~~R~~Il~~~~~~~~--~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSC--BCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCC--CCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 67899999999999776 3345556789999999999999999999999999999999999999999999999987765
Q ss_pred c
Q psy5440 797 N 797 (1036)
Q Consensus 797 ~ 797 (1036)
.
T Consensus 80 ~ 80 (88)
T 3vlf_B 80 S 80 (88)
T ss_dssp -
T ss_pred c
Confidence 4
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.00 E-value=6e-10 Score=112.97 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCccccccccChH-HHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhh
Q psy5440 541 IGVRFKDVAGCEE-AKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEF 615 (1036)
Q Consensus 541 ~~v~F~DV~G~ee-aK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~ 615 (1036)
...+|+++++.+. .++.+..+..++.+- ....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468999987433 333333333333221 12235689999999999999999999876 678888888887
Q ss_pred hhhhccCchh-HHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 616 LEMFVGVGPS-RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 616 ~e~~vG~~~~-~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
.+.+...... ....++... ..|.+|+|||++..+ .+......+..++.... ..+..+|.+||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCCC
Confidence 6543211000 000122222 257899999998542 23344456666665542 2345677778765
Q ss_pred c
Q psy5440 695 D 695 (1036)
Q Consensus 695 d 695 (1036)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 4
No 101
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.00 E-value=2.4e-10 Score=124.91 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=52.8
Q ss_pred CCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.|+|+||+|++++|++|+|.|.+ +++|+.|..+|..+|+|+||+|| |||+||+|||++++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC
Confidence 4689999999999999999996655 99999999999999999999999 9999999999999854
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.90 E-value=2.3e-09 Score=110.35 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=64.5
Q ss_pred CccccccccChHHHH-HHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 542 GVRFKDVAGCEEAKV-EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~-eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
..+|+++++.+.... .+..+..++.+... ...|.+++|+||||||||+||+++++++ +.+++.++++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 468999998764333 22333333322110 0124789999999999999999999977 67899999988766
Q ss_pred hhccCc-hhHHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 618 MFVGVG-PSRVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 618 ~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
...... ...+..++..... +.+|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 432211 1112333333332 359999999765
No 103
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.90 E-value=9.4e-10 Score=117.85 Aligned_cols=66 Identities=39% Similarity=0.710 Sum_probs=57.2
Q ss_pred CCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+..+.++|+||+|++++|++|.+++.++++|+.|.++|.++|+|+||+|| |||+||+++|++++..
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999999999999999999999 9999999999998743
No 104
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=116.71 Aligned_cols=63 Identities=48% Similarity=0.824 Sum_probs=54.2
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
++++|+||+|++++|++|+++++++++|+.|.++|++.|+||||+|| |||++|+++|.+++..
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999999999999999999999999 9999999999999754
No 105
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=98.88 E-value=6.5e-09 Score=97.00 Aligned_cols=85 Identities=53% Similarity=0.958 Sum_probs=75.8
Q ss_pred CCCccccchhHHHHHHHhcCCeeEEEEEcCeEEEEEEcCCCCCCCCceEEEEcCChhhHHHHHHHHHHhcCCCCCCCccc
Q psy5440 3 EMNYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPANYLPV 82 (1036)
Q Consensus 3 ~~~~~~IsYs~F~~~ll~~g~V~~V~i~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~ 82 (1036)
.++.++|||++|..++|++|.|++|++.++..++++++++......++|++.+++++.|++.|+.++.++++.+.+.+|+
T Consensus 12 ~~~~~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~aQ~el~i~~~~~ipV 91 (99)
T 2lna_A 12 KRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPV 91 (99)
T ss_dssp CSSSEECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHHHHHHTTCCTTTCCCE
T ss_pred cCCCcccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHHHHHHcCCCcccccCe
Confidence 46778999999998899999999999999889999999876554566789999999999999999999999999999999
Q ss_pred eeecc
Q psy5440 83 IYKTE 87 (1036)
Q Consensus 83 ~~~~~ 87 (1036)
.|...
T Consensus 92 ~Y~~e 96 (99)
T 2lna_A 92 VYIAE 96 (99)
T ss_dssp EECCC
T ss_pred EEeec
Confidence 88644
No 106
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.88 E-value=1.6e-09 Score=119.59 Aligned_cols=65 Identities=22% Similarity=0.459 Sum_probs=61.3
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.+.|+||||||| |||+||+|+|++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 45789999999999999999999998 99999999999999999999999 9999999999999743
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=1.8e-08 Score=114.74 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=85.9
Q ss_pred cccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhhhh-----
Q psy5440 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFLEM----- 618 (1036)
Q Consensus 546 ~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~e~----- 618 (1036)
.+++|.+....++.+.+..+.. ....+|++|++||||+++|++++...+. +|+.++|+.+-+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4689999988888887776532 2345999999999999999999987653 3999999875432
Q ss_pred --------hccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcC-----cC----
Q psy5440 619 --------FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-----NT---- 681 (1036)
Q Consensus 619 --------~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~-----~~---- 681 (1036)
|.|... .-...|+.|.. .+||||||+.+.. .....||..++.- ..
T Consensus 199 lfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 199 LFGHEKGAFTGALT-RKKGKLELADQ---GTLFLDEVGELDQ--------------RVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHEECSCSSSSCCC-CEECHHHHTTT---SEEEEETGGGSCH--------------HHHHHHHHHHHHSEECCBTCCCBE
T ss_pred hcCccccccCCccc-ccCChHhhcCC---CeEEecChhhCCH--------------HHHHHHHHHHHhCCcccCCCCcce
Confidence 111111 11235666644 4899999999832 2333444444311 11
Q ss_pred CCCeEEEEecCCCccccHHhhCCCCcce
Q psy5440 682 TTNVVVLAATNRVDVLDKALLRPGRFDR 709 (1036)
Q Consensus 682 ~~~ViVIaaTN~pd~LDpALlRpGRFdr 709 (1036)
.-++.+|+|||..- ..+...|+|..
T Consensus 261 ~~~~rii~at~~~l---~~~v~~g~fr~ 285 (368)
T 3dzd_A 261 EVDIRVISATNKNL---EEEIKKGNFRE 285 (368)
T ss_dssp ECCCEEEEEESSCH---HHHHHTTSSCH
T ss_pred eeeeEEEEecCCCH---HHHHHcCCccH
Confidence 22678999999643 34444566543
No 108
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.86 E-value=7.7e-09 Score=120.25 Aligned_cols=216 Identities=19% Similarity=0.118 Sum_probs=126.6
Q ss_pred cccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHH-HHhcCCCeEEEec--h---hhhhhhcc
Q psy5440 548 VAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKAT-AGEANVPFITVSG--S---EFLEMFVG 621 (1036)
Q Consensus 548 V~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAI-A~eagvpfi~Is~--s---e~~e~~vG 621 (1036)
|.|++.+|..|.-.+ +....+ ++-.-++||.|+||| ||+||+++ +..+..-. ++++ + .+...+.+
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEc
Confidence 889988876664222 211111 122337999999999 99999999 77654322 2222 1 11111000
Q ss_pred C-chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhc-------CcCCCCeEEEEecCC
Q psy5440 622 V-GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDG-------FNTTTNVVVLAATNR 693 (1036)
Q Consensus 622 ~-~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg-------~~~~~~ViVIaaTN~ 693 (1036)
. +-..-...+..|.. .|+|||||+.+- ..+...|++.|+. ..-+.++.||||+|.
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 0 00000122334433 499999998873 2456666666652 223457899999997
Q ss_pred Cc-----------cccHHhhCCCCcceEEEe-cCCChhh-------------HHHHHHHhcC--CCCCCCChh---hHHH
Q psy5440 694 VD-----------VLDKALLRPGRFDRQIFV-PAPDIKG-------------RASIFKVHLK--PLKTDLDRD---DLSR 743 (1036)
Q Consensus 694 pd-----------~LDpALlRpGRFdr~I~i-~~Pd~ee-------------R~~IL~~~L~--~l~~~l~~~---~l~~ 743 (1036)
.. .|++++++ |||..+.+ +.|+.+. ..+++. +.+ .....++.+ .+.+
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHH
Confidence 64 78999999 99986543 5555432 222221 111 112222221 1111
Q ss_pred HH-----h--------hcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCc
Q psy5440 744 KL-----A--------ALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 744 ~L-----A--------~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gl 792 (1036)
.. . ...-|.|++.+..+++-|-..|..+++..|+.+|+.+|+.-+...+
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 10 0 0355889999999999999999999999999999999998765443
No 109
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.83 E-value=3.5e-09 Score=115.13 Aligned_cols=78 Identities=40% Similarity=0.618 Sum_probs=66.3
Q ss_pred CCCCccccccEEecCCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhh
Q psy5440 121 LFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTA 197 (1036)
Q Consensus 121 ~~~~fGKSkak~~~~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~ 197 (1036)
..++|.++++.++... +.++|+||+|+++++++|++++.++.+|..|..++..+|+|+||+|| |||+||++||+++
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 19 SAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp -------CCCCCBCCC-CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcccccccccccccCC-CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4567888888777544 88999999999999999999999999999999999999999999999 9999999999998
Q ss_pred cc
Q psy5440 198 KK 199 (1036)
Q Consensus 198 ~~ 199 (1036)
+.
T Consensus 98 ~~ 99 (278)
T 1iy2_A 98 RV 99 (278)
T ss_dssp TC
T ss_pred CC
Confidence 73
No 110
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=119.00 Aligned_cols=62 Identities=29% Similarity=0.350 Sum_probs=56.6
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
+.+.|+|+||+|++++|++|+|.|.+ +++|+.|.. +.+.|+||||||| |||+||+++|.+++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 45789999999999999999999988 999999984 3567899999999 99999999999993
No 111
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.79 E-value=2.4e-09 Score=115.13 Aligned_cols=66 Identities=47% Similarity=0.721 Sum_probs=62.1
Q ss_pred CCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.+.++|+||+|+++++++|++++.++++|+.|.++|.+.|+|+||+|| |||+||+++|.+++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999999999999999999999999 9999999999998753
No 112
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.77 E-value=7e-09 Score=93.17 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCc
Q psy5440 717 DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 717 d~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gl 792 (1036)
|.++|.+||+.|++... ++.+..+..||..|.||||+||.++|++|++.|.++....|+++||..|+.++..+.
T Consensus 2 d~~~R~~Il~~~l~~~~--~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMN--LSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSC--BCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999766 334445678999999999999999999999999999889999999999999976653
No 113
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.76 E-value=4.6e-09 Score=116.83 Aligned_cols=65 Identities=31% Similarity=0.374 Sum_probs=59.7
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|.. +.+.|+||||||| |||+||+|+|.+++..
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 456789999999999999999999988 999999987 6788999999999 9999999999999854
No 114
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.74 E-value=3.7e-09 Score=117.93 Aligned_cols=118 Identities=22% Similarity=0.228 Sum_probs=74.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC--CeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV--PFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGG 656 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv--pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~ 656 (1036)
...++|+||||||||+||.++|.+.+. .|+.+...+.++.+.......++.+++.+.+.. +|+||+|+.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 344799999999999999999987554 455553244444333333444555666555544 9999999999543322
Q ss_pred CCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHh
Q psy5440 657 RNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701 (1036)
Q Consensus 657 ~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpAL 701 (1036)
.. ......+.+++++..|+++....++.+|+++| +...|+++
T Consensus 201 ~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 11 01112356777777777766666888999998 55566554
No 115
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.73 E-value=1.2e-08 Score=109.02 Aligned_cols=66 Identities=44% Similarity=0.701 Sum_probs=62.1
Q ss_pred CCCCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
...+.++|+||+|+++++++|++++.++.+|..|..++.++|+|+||+|| |||+||+++|++++..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 55688999999999999999999999999999999999999999999999 9999999999998743
No 116
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.70 E-value=5.5e-09 Score=93.89 Aligned_cols=72 Identities=25% Similarity=0.231 Sum_probs=49.6
Q ss_pred hhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCc
Q psy5440 719 KGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGM 792 (1036)
Q Consensus 719 eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aiervi~gl 792 (1036)
++|.+||+.|+++.. ++.+..+..||..|+||||+||.++|++|++.|+++....|+++||..|+.+++.+.
T Consensus 1 ~~R~~Il~~~l~~~~--~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CE--ECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCC--CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 469999999998765 233344567899999999999999999999999999999999999999999986553
No 117
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.67 E-value=4e-08 Score=102.70 Aligned_cols=132 Identities=15% Similarity=0.211 Sum_probs=85.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHh--------cC-CCeEEEechhhhhhhc----------cCchh--HHHHHHHHh--
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGE--------AN-VPFITVSGSEFLEMFV----------GVGPS--RVRDMFSMA-- 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~e--------ag-vpfi~Is~se~~e~~v----------G~~~~--~vr~lF~~A-- 634 (1036)
.+...|++|+||||||++|.+.+.. .| .+++.+++.++.-... ..... ....+++-+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3456899999999999999886433 35 7888888776643221 11111 112333321
Q ss_pred hcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEec
Q psy5440 635 RKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVP 714 (1036)
Q Consensus 635 r~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~ 714 (1036)
....++||+|||++.+.+.+.... +. ..++..+.. ....++-||.+|+.++.||.++++ |++.++++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~-----e~----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS-----KI----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC-----CC----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc-----hh----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 234468999999999976542211 11 124444442 344567778888889999999998 999999998
Q ss_pred CCChhhH
Q psy5440 715 APDIKGR 721 (1036)
Q Consensus 715 ~Pd~eeR 721 (1036)
.|....+
T Consensus 152 ~~~~~~~ 158 (199)
T 2r2a_A 152 SNKMGMR 158 (199)
T ss_dssp ECSSCCE
T ss_pred CcccCcc
Confidence 7655444
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.67 E-value=1.8e-08 Score=109.12 Aligned_cols=66 Identities=29% Similarity=0.491 Sum_probs=61.8
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
...+.++|+||+|+++++++|++.+.. +++|+.|.++|...|+|+||+|| |||+||+++|.+++..
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345789999999999999999999988 99999999999999999999999 9999999999999854
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=5.1e-08 Score=97.05 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=67.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRG 655 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~ 655 (1036)
...++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4579999999999999999999977 777889998876543 1123578999999987631
Q ss_pred CCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC-CCcccc--HHhhCCCCcceEEEe
Q psy5440 656 GRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN-RVDVLD--KALLRPGRFDRQIFV 713 (1036)
Q Consensus 656 ~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN-~pd~LD--pALlRpGRFdr~I~i 713 (1036)
.. .+.+..++..+. .....++|.+|| .|..+. +.|.+ |+..-..+
T Consensus 98 -------~~-~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 -------EE-QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -------HH-HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -------HH-HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 11 334444444432 222332344555 455333 77877 76544433
No 120
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=3e-07 Score=101.41 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=112.5
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh-------
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF------- 615 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~------- 615 (1036)
...+.++|.++..+.|.+ +.. ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 10 ~~~~~~~gR~~el~~L~~----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 355678999876665554 322 368999999999999999999998777888887643
Q ss_pred ----hhhh---c------------------c-----C---------chhHHHHHHHHhhcC--CCeEEEEcCchhhhhcC
Q psy5440 616 ----LEMF---V------------------G-----V---------GPSRVRDMFSMARKH--APCILFIDEIDAVGRKR 654 (1036)
Q Consensus 616 ----~e~~---v------------------G-----~---------~~~~vr~lF~~Ar~~--aP~ILfIDEIDaL~~~r 654 (1036)
...+ . + . ....+..+++..... .|.+|+|||+|.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0000 0 0 0 012344555444432 38999999999985410
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHh--h-----CCCCcceEEEecCCChhhHHHHHHH
Q psy5440 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL--L-----RPGRFDRQIFVPAPDIKGRASIFKV 727 (1036)
Q Consensus 655 ~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpAL--l-----RpGRFdr~I~i~~Pd~eeR~~IL~~ 727 (1036)
.......+..+... ..++.+|.+++....+...+ . -.||+...+.+++.+.++..+++..
T Consensus 154 -------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 154 -------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp -------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 11122334444332 13566666665432222110 0 1246667899999999999999987
Q ss_pred hcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHH
Q psy5440 728 HLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 728 ~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~Lvn 762 (1036)
.+.......+ .. ..+...|.|+. .-+..++.
T Consensus 221 ~~~~~~~~~~--~~-~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 221 GFQEADIDFK--DY-EVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHTCCCC--CH-HHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHcCCCCC--cH-HHHHHHhCCCH-HHHHHHHH
Confidence 7642221122 12 56777888864 44555544
No 121
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=1.6e-08 Score=114.36 Aligned_cols=64 Identities=30% Similarity=0.368 Sum_probs=57.4
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
..+.++|+||+|++++|+.|++.|.+ +++|+.|.. +.+.|+||||||| |||+||+++|.+++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45679999999999999999999988 999999987 7789999999999 9999999999999743
No 122
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.64 E-value=6.3e-07 Score=98.73 Aligned_cols=192 Identities=17% Similarity=0.180 Sum_probs=113.4
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh------
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL------ 616 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~------ 616 (1036)
..-+.++|.++..+.|.+.+.. | ..++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 3456789999888877766542 1 4799999999999999999999875 7777765431
Q ss_pred ------hhh---ccC-----------------c----hhHHHHHHHH----hhcCCCeEEEEcCchhhhhcCCCCCCCCC
Q psy5440 617 ------EMF---VGV-----------------G----PSRVRDMFSM----ARKHAPCILFIDEIDAVGRKRGGRNFGGH 662 (1036)
Q Consensus 617 ------e~~---vG~-----------------~----~~~vr~lF~~----Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~ 662 (1036)
..+ .+. . ...+.++++. +....|.+|+|||+|.+..... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cch
Confidence 100 000 0 1123333332 2222489999999999853100 001
Q ss_pred hhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHH-----hhC--CCCcceEEEecCCChhhHHHHHHHhcCCCCCC
Q psy5440 663 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKA-----LLR--PGRFDRQIFVPAPDIKGRASIFKVHLKPLKTD 735 (1036)
Q Consensus 663 ~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpA-----LlR--pGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~ 735 (1036)
......+..++ +. ..++.+|.++.....++.- ... .||+...+.+++.+.++..+++...+......
T Consensus 149 ~~~~~~L~~~~---~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~ 222 (350)
T 2qen_A 149 KELLALFAYAY---DS---LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD 222 (350)
T ss_dssp HHHHHHHHHHH---HH---CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred hhHHHHHHHHH---Hh---cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 12223333333 22 1356666665432212211 001 24666789999999999999998876543333
Q ss_pred CChhhHHHHHhhcCCCCCHHHHHHHHH
Q psy5440 736 LDRDDLSRKLAALTPGFTGADIANVCN 762 (1036)
Q Consensus 736 l~~~~l~~~LA~~T~G~SgaDL~~Lvn 762 (1036)
.+. ..+..+...|.|+. .-+..++.
T Consensus 223 ~~~-~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 223 VPE-NEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCH-HHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCH-HHHHHHHHHhCCCH-HHHHHHHH
Confidence 333 34567778888865 44555443
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.60 E-value=6.2e-08 Score=107.62 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=61.4
Q ss_pred CccccccccChHHHH-HHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhh
Q psy5440 542 GVRFKDVAGCEEAKV-EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFL 616 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~-eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~ 616 (1036)
..+|+++.+.+.... .+..+..++.+. ....+.+++|+||||||||+||+++|.++ +.+++.+++++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 368999987553222 222222333211 11125789999999999999999999865 4889999999887
Q ss_pred hhhccCc-hhHHHHHHHHhhcCCCeEEEEcCchhh
Q psy5440 617 EMFVGVG-PSRVRDMFSMARKHAPCILFIDEIDAV 650 (1036)
Q Consensus 617 e~~vG~~-~~~vr~lF~~Ar~~aP~ILfIDEIDaL 650 (1036)
..+.... ...+..++.... .+.+||||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6543321 111222222222 2459999999755
No 124
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.56 E-value=8e-07 Score=121.78 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=95.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRN 658 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~ 658 (1036)
..|+++.||+|||||.+++++|+.+|.+++.++|++-++ ...+..+|..+... ++++++|||+.+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLD------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcC-------
Confidence 357899999999999999999999999999999997544 35567777766554 3799999999873
Q ss_pred CCCChhHHHHHHHHHHH----hhc-----------CcCCCCeEEEEecCC----CccccHHhhCCCCcceEEEecCCChh
Q psy5440 659 FGGHSEQENTLNQLLVE----MDG-----------FNTTTNVVVLAATNR----VDVLDKALLRPGRFDRQIFVPAPDIK 719 (1036)
Q Consensus 659 ~~~~~e~~~~LnqLL~e----mDg-----------~~~~~~ViVIaaTN~----pd~LDpALlRpGRFdr~I~i~~Pd~e 719 (1036)
.+....+++.+.. +.. +..+.++.|++|.|. ...|+++|++ || +.|.+..||.+
T Consensus 711 ----~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 711 ----EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 2333344333322 211 122456778889883 4479999999 88 78999999999
Q ss_pred hHHHHHHH
Q psy5440 720 GRASIFKV 727 (1036)
Q Consensus 720 eR~~IL~~ 727 (1036)
...+|+-.
T Consensus 784 ~i~ei~l~ 791 (2695)
T 4akg_A 784 TIAEMILQ 791 (2695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888643
No 125
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.51 E-value=7.6e-08 Score=112.13 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=56.5
Q ss_pred CCCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhh
Q psy5440 135 SSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTA 197 (1036)
Q Consensus 135 ~~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~ 197 (1036)
...+.++|+||+|++++|+.|++.|.+ +++|+.|.. +...|+||||||| |||+||+|+|.++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999887 999999985 4567899999999 9999999999998
No 126
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=7.5e-08 Score=110.02 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=79.4
Q ss_pred hcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhh-
Q psy5440 574 LGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGR- 652 (1036)
Q Consensus 574 lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~- 652 (1036)
++++.+..++|+||||+|||||++++++..+..++.+...+ .+.. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----------~~~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----------DRLN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----------TTHH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----------hhHH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 46777788999999999999999999998877665543322 1111 1111122346789999998865
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecC
Q psy5440 653 KRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 653 ~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~ 715 (1036)
.+.... +. . ......+...+|| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~--~~-~-~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPS--GQ-G-INNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCC--CS-H-HHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhccc--cC-c-chHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 222111 11 1 1133455555665 45678899999999 79999999998776644
No 127
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.45 E-value=1.4e-07 Score=111.36 Aligned_cols=63 Identities=25% Similarity=0.530 Sum_probs=59.5
Q ss_pred CccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
..++|+||+|+++++++|++.+.+ +++|+.|..+|+..|+||||||| |||++|+|+|.+++..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999998 99999999999999999999999 9999999999999743
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.43 E-value=1.8e-07 Score=101.96 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=57.6
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+.++|+||.|++++|+.|++.+.. +++|+.|..++ ..|+|+||+|| |||++|+++|++++.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 44679999999999999999999988 99999999876 46899999999 999999999999974
No 129
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=105.33 Aligned_cols=62 Identities=27% Similarity=0.401 Sum_probs=57.3
Q ss_pred CccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+.++|+||+|++++|++|++.+.+ +++|+.|..++ +.|++|||+|| |||+||+++|.+++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 568999999999999999999988 99999998875 78999999999 9999999999999743
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.37 E-value=6.1e-07 Score=119.42 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=82.5
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh----hhcc------------CchhHHHHHHHHhh
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE----MFVG------------VGPSRVRDMFSMAR 635 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e----~~vG------------~~~~~vr~lF~~Ar 635 (1036)
|...+++++|+||||||||+||.+++.++ |.....++..+.+. ...| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36778889999999999999999998876 45666666554321 1112 23456677777888
Q ss_pred cCCCeEEEEcCchhhhhcC---CCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 636 KHAPCILFIDEIDAVGRKR---GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 636 ~~aP~ILfIDEIDaL~~~r---~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..+|++|||||++.+.+.+ +...........+.++++|.+|+++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8999999999999887642 2111111112456789999999988888888877764
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.33 E-value=1.3e-06 Score=120.43 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=92.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH-hcCCCeEEEechhhhhhhccCchhHHHHHHHHh----h------------cCCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAG-EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMA----R------------KHAPCI 641 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~-eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~A----r------------~~aP~I 641 (1036)
.+++||+||||||||.+++.... ..+.+++.++++.-.+ +..+...++.. + .+..+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 45799999999999987765544 4466788888876432 34455555421 1 122379
Q ss_pred EEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--------CCCCeEEEEecCCCc-----cccHHhhCCCCcc
Q psy5440 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------TTTNVVVLAATNRVD-----VLDKALLRPGRFD 708 (1036)
Q Consensus 642 LfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------~~~~ViVIaaTN~pd-----~LDpALlRpGRFd 708 (1036)
||||||+.-... ..+.......|.|+++.- ++. .-.++.+|||+|.|. .|+++++| ||.
T Consensus 1378 lFiDDiNmp~~D-----~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTD-----KYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEETTTTCCCCC-----TTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEecccCCCCcc-----ccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 999999853211 112234456677777542 221 124688999999883 69999999 895
Q ss_pred eEEEecCCChhhHHHHHHHhcC
Q psy5440 709 RQIFVPAPDIKGRASIFKVHLK 730 (1036)
Q Consensus 709 r~I~i~~Pd~eeR~~IL~~~L~ 730 (1036)
.+.++.|+.+....|+..++.
T Consensus 1450 -vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 599999999999999876543
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.24 E-value=7.4e-07 Score=101.61 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=57.7
Q ss_pred CCCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 136 SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 136 ~~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
....++|+||+|++++++.|.+++.+ +.+|+.|..++ ..+++|||||| |||+||+++|.+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 34678999999999999999999988 89999999888 46899999999 9999999999998843
No 133
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.15 E-value=5.9e-06 Score=96.40 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=99.2
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEe---------cC---CCccccHHhhCCCC
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAA---------TN---RVDVLDKALLRPGR 706 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaa---------TN---~pd~LDpALlRpGR 706 (1036)
|.|+||||+|.+. ....|.|+..|+.. ..+++|+++ |+ .+..|+|++++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999983 25778888888743 334555455 33 27789999999 9
Q ss_pred cceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy5440 707 FDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALT-PGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785 (1036)
Q Consensus 707 Fdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T-~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Ai 785 (1036)
|.. +.+++|+.++..+||+..+......++.+ .+..+++.+ .| +.+...++++.|...|..++...|+.+|+.+|+
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 976 69999999999999998875333334443 345677766 44 788899999999899998899999999999998
Q ss_pred HHH
Q psy5440 786 ERV 788 (1036)
Q Consensus 786 erv 788 (1036)
.-+
T Consensus 435 ~~~ 437 (456)
T 2c9o_A 435 ELF 437 (456)
T ss_dssp HHS
T ss_pred HHh
Confidence 653
No 134
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.13 E-value=1e-05 Score=90.36 Aligned_cols=178 Identities=16% Similarity=0.121 Sum_probs=116.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CC-CeEEEechhhhhhhccCchhHHHHHHHHhhc----CCCeEEEEcCch
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NV-PFITVSGSEFLEMFVGVGPSRVRDMFSMARK----HAPCILFIDEID 648 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gv-pfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~----~aP~ILfIDEID 648 (1036)
+.+..+||+||+|+||++.+++++..+ +. ++..+.. .+ ...++++++.+.. ...-||+|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 356679999999999999999998865 22 2222211 11 2345666665542 335699999998
Q ss_pred h-hhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC------ccccHHhhCCCCcceEEEecCCChhhH
Q psy5440 649 A-VGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV------DVLDKALLRPGRFDRQIFVPAPDIKGR 721 (1036)
Q Consensus 649 a-L~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p------d~LDpALlRpGRFdr~I~i~~Pd~eeR 721 (1036)
. +.. ...+.|+..++. .+.++++|.+|+.+ ..+-+++.+ |. ..+.+.+++..+.
T Consensus 87 ~kl~~--------------~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 87 NGPNA--------------AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp SCCCT--------------THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred CCCCh--------------HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 7 621 245667776663 34455555555443 356778887 54 5689999999999
Q ss_pred HHHHHHhcCCCCCCCChhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy5440 722 ASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIER 787 (1036)
Q Consensus 722 ~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~SgaDL~~LvneAal~A~r~~~~~It~~d~~~Aier 787 (1036)
...++..++..+..++.+. ++.|+..+.| +.+++.+.+...++.+ ....||.+++++.+..
T Consensus 148 ~~~l~~~~~~~g~~i~~~a-~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDAA-NQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHTTCEECHHH-HHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999888876554555544 4677777655 4455555555544332 3457999999887665
No 135
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.11 E-value=1.8e-06 Score=90.58 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPF 607 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpf 607 (1036)
.+++||+||||||||++|.++|+.+...+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 35799999999999999999999886443
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.94 E-value=6.6e-05 Score=76.74 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=24.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
.+.|+||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3789999999999999999998875544
No 137
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=3.1e-05 Score=84.33 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV 605 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv 605 (1036)
.+++||+||||||||++|+|||+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 357999999999999999999997643
No 138
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.82 E-value=7.2e-05 Score=103.64 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=91.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhhhhccCchhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNF 659 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~ 659 (1036)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-++ ...+..+|.-+... .+..++|||+.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC--------
Confidence 46789999999999999999999999999999987543 23455566554433 3688999998872
Q ss_pred CCChhHHHHHHHHHHHh-------------h-c--CcCCCCeEEEEecCC----CccccHHhhCCCCcceEEEecCCChh
Q psy5440 660 GGHSEQENTLNQLLVEM-------------D-G--FNTTTNVVVLAATNR----VDVLDKALLRPGRFDRQIFVPAPDIK 719 (1036)
Q Consensus 660 ~~~~e~~~~LnqLL~em-------------D-g--~~~~~~ViVIaaTN~----pd~LDpALlRpGRFdr~I~i~~Pd~e 719 (1036)
.+...++.+.+..+ + | +.-+.++.|++|.|. ...|+++|+. || |.|.+..||.+
T Consensus 670 ---~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 670 ---ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 22223333322211 1 2 223456788999983 3479999999 88 77999999998
Q ss_pred hHHHHHHH
Q psy5440 720 GRASIFKV 727 (1036)
Q Consensus 720 eR~~IL~~ 727 (1036)
...+|+-.
T Consensus 744 ~i~ei~L~ 751 (3245)
T 3vkg_A 744 MIAQVMLY 751 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888644
No 139
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.65 E-value=8.4e-05 Score=76.54 Aligned_cols=39 Identities=23% Similarity=0.082 Sum_probs=31.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
.....-++|+||||+|||+|++.+|...+.++++++..+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 444455899999999999999999986677888887654
No 140
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.61 E-value=1.8e-05 Score=104.62 Aligned_cols=118 Identities=20% Similarity=0.293 Sum_probs=79.6
Q ss_pred hcC-CCCce--eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh----------------hhccCchhHHHHHH
Q psy5440 574 LGA-KIPKG--AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE----------------MFVGVGPSRVRDMF 631 (1036)
Q Consensus 574 lG~-~~pkG--vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e----------------~~vG~~~~~vr~lF 631 (1036)
+|. -.|+| +++|||+|||||+||-.++.++ |-....++...-++ .....++..+.-+.
T Consensus 1423 lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1423 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred cCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 453 55666 9999999999999998776544 66777776542111 13455567777788
Q ss_pred HHhhcCCCeEEEEcCchhhhhcCCCC-CCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 632 SMARKHAPCILFIDEIDAVGRKRGGR-NFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 632 ~~Ar~~aP~ILfIDEIDaL~~~r~~~-~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..++..+|++|+||.+.+|.++.... ..+.+ .-..+.+.|.|..|.+.-...++.+|.+.
T Consensus 1503 ~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 88899999999999999998764321 11111 11345667777777776666677777653
No 141
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.00014 Score=82.85 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=68.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----hccC-----------chhHHHHHHHH-hhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM----FVGV-----------GPSRVRDMFSM-ARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~----~vG~-----------~~~~vr~lF~~-Ar~ 636 (1036)
.....-++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+....+. .+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4444568999999999999999998764 668888876542211 1111 11222233332 334
Q ss_pred CCCeEEEEcCchhhhhcCCCC-CCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 637 HAPCILFIDEIDAVGRKRGGR-NFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~~~-~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
..+++|+||.+..+..+.... ..+.. ....+.+.+++..|..+....++.||++..
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 668999999999997422110 00000 022345666666665555556677766543
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.58 E-value=3.5e-05 Score=84.04 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=53.0
Q ss_pred cee-ccccchHHHHHHHHHHHhcCCchhHHhcCCCCCc---eeEEecC---ChhhHHHHHHhhhccc
Q psy5440 141 RFK-DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK---GAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 141 tf~-DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pk---GvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.++ ||.|++++|+.|.+++.++..+..+.++|...++ ++||+|| |||++|+++|.+++..
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344 8999999999999999998889999999977655 5999999 9999999999998753
No 143
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=0.00017 Score=75.36 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhh------hhh--hccCc---------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEF------LEM--FVGVG--------------- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~------~e~--~vG~~--------------- 623 (1036)
+....-++|+||||+|||+|++.+|..+ +...++++..+- ... ..+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3334458999999999999999999852 456777776541 110 01111
Q ss_pred hhH----HHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc
Q psy5440 624 PSR----VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD 695 (1036)
Q Consensus 624 ~~~----vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd 695 (1036)
... +..+.+.+....|.+|+|||+..+....-.+. +...+..+.+..++..+..+....++.||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 111 22233444456799999999998864211000 000111222344444333333334566666665433
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.56 E-value=0.00012 Score=75.69 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
+.....++|+||||+|||+|++.++..+ +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3334458999999999999999999654 556666654
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.55 E-value=0.00011 Score=83.42 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----hccCc--------hhHHHHHHH----HhhcC
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM----FVGVG--------PSRVRDMFS----MARKH 637 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~----~vG~~--------~~~vr~lF~----~Ar~~ 637 (1036)
....-++|+||||+|||+||..+|..+ +.++++++..+.... ..|.. ...+.+++. ..+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 333458999999999999999999864 667888876542210 01110 111222222 23346
Q ss_pred CCeEEEEcCchhhhhc-CCCCCCCCC--hhHHHHHHHHHHHhhcCcCCCCeEEEEe
Q psy5440 638 APCILFIDEIDAVGRK-RGGRNFGGH--SEQENTLNQLLVEMDGFNTTTNVVVLAA 690 (1036)
Q Consensus 638 aP~ILfIDEIDaL~~~-r~~~~~~~~--~e~~~~LnqLL~emDg~~~~~~ViVIaa 690 (1036)
.|.+|+||.+..+.+. .-.+..+.. ....+.+.+++..|..+....++.||.+
T Consensus 139 ~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 139 VVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp CCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7899999999988641 111111111 1234566777776666655566666665
No 146
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.54 E-value=7.2e-05 Score=84.51 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----hccCchh--------HHHHHHH----Hhhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM----FVGVGPS--------RVRDMFS----MARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~----~vG~~~~--------~vr~lF~----~Ar~ 636 (1036)
.....-++|+||||+|||+||..++..+ +.++++++...-.+. ..|.... .+.++++ .++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3334458999999999999999998754 567777775432211 1121110 1222222 3345
Q ss_pred CCCeEEEEcCchhhhh
Q psy5440 637 HAPCILFIDEIDAVGR 652 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~ 652 (1036)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6799999999999863
No 147
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.49 E-value=0.00015 Score=96.96 Aligned_cols=119 Identities=16% Similarity=0.244 Sum_probs=79.9
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhhh----ccC--------chhHHHHHHHHhhc---
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMF----VGV--------GPSRVRDMFSMARK--- 636 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~~----vG~--------~~~~vr~lF~~Ar~--- 636 (1036)
|..+...++|+|+||+|||+||..+|..+ +.+++++++.+-.+.. .|. .+..+.++++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35666779999999999999999999866 4579999987644432 221 12235556655544
Q ss_pred -CCCeEEEEcCchhhhh-cCCCCCCC--CChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 637 -HAPCILFIDEIDAVGR-KRGGRNFG--GHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 637 -~aP~ILfIDEIDaL~~-~r~~~~~~--~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
..|++|+||.|+.+.+ ....+..+ .+.-..+.+++++..|..+....+|.||++..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999975 21000001 111123457888888888777778888877653
No 148
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.48 E-value=0.00016 Score=80.43 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhh--hh----h--hccCc---------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEF--LE----M--FVGVG--------------- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~--~e----~--~vG~~--------------- 623 (1036)
.+...-++|+||||+|||+||..+|..+ +.+.++++...- .+ . ..|..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3444558999999999999999999865 456788876542 11 0 01111
Q ss_pred hh----HHHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 624 PS----RVRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 624 ~~----~vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
.. .+..+...++. ..+.+|+||.+..+......+. +...++.+.+.+++..+..+....++.||.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 12233334444 6789999999999975321110 11122334566666666555444566666654
No 149
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.46 E-value=0.0015 Score=75.99 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCc--------CCCCeEEEEec----C
Q psy5440 625 SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFN--------TTTNVVVLAAT----N 692 (1036)
Q Consensus 625 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~--------~~~~ViVIaaT----N 692 (1036)
...+...+.|..+ +|||+||||.+++..+. .+++...+.+.+.||..|++.. ...+|++|+|. +
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 3445555555333 49999999999865431 2333344457788999999742 35689999987 2
Q ss_pred CCccccHHhhCCCCcceEEEecCCChhhHHHHHH
Q psy5440 693 RVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFK 726 (1036)
Q Consensus 693 ~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~ 726 (1036)
.|..+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 315 ~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 315 RPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 34445588988 999999999999999999994
No 150
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.00061 Score=71.40 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHH--Hh--cCCCeEEEechhhhhh------hccC-----------------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATA--GE--ANVPFITVSGSEFLEM------FVGV----------------------- 622 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA--~e--agvpfi~Is~se~~e~------~vG~----------------------- 622 (1036)
+....-+.|.||+|+|||||+++++ .. .+...+.++..+.... ..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3344458999999999999999998 33 3445555554321110 0010
Q ss_pred -------------chhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEE
Q psy5440 623 -------------GPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLA 689 (1036)
Q Consensus 623 -------------~~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIa 689 (1036)
.......+...+....|.+|+|||+-++..... ........+..++..+. ..++.||.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~ 177 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEE
Confidence 011122233334457899999999988864221 11233444666666653 23566777
Q ss_pred ecCCCcccc-----HHhhCCCCc-ceEEEec
Q psy5440 690 ATNRVDVLD-----KALLRPGRF-DRQIFVP 714 (1036)
Q Consensus 690 aTN~pd~LD-----pALlRpGRF-dr~I~i~ 714 (1036)
+|+..+... +.+.. -+ |+.+.+.
T Consensus 178 vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 178 TTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 777655431 11222 35 7777774
No 151
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00018 Score=81.55 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=65.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh----hccC-----------chhHHHHHHHH-hhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM----FVGV-----------GPSRVRDMFSM-ARK 636 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~----~vG~-----------~~~~vr~lF~~-Ar~ 636 (1036)
.+...-++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+..+++. ++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4445568999999999999999998754 668888887432111 1111 11223333332 234
Q ss_pred CCCeEEEEcCchhhhhcCC-CCCCCCC-h-hHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 637 HAPCILFIDEIDAVGRKRG-GRNFGGH-S-EQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~-~~~~~~~-~-e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..+.+|+||.+..+..... .+..+.. . ...+.+.+++..+..+....++.||.+.
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 6789999999999864211 0000000 0 1223445555555444344566666553
No 152
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.37 E-value=0.0003 Score=72.77 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CCeEEEechhhhh--------hhccCch--------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VPFITVSGSEFLE--------MFVGVGP-------------- 624 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~se~~e--------~~vG~~~-------------- 624 (1036)
+....-+.|+||+|+|||+|++.+++..- ...++++..+... ...+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 33344589999999999999999998542 2366666543100 0011100
Q ss_pred -----hHHHHHHHHhh-----cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 625 -----SRVRDMFSMAR-----KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 625 -----~~vr~lF~~Ar-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
..+..+...+. ...|.+|+|||+-.......... +....+...+.+++..+..+....++.||.+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST-THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC-cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 01222333333 56789999999987754321110 00112122233343333333333466777777644
Q ss_pred ccccHHhhCCCCcceEEEecC
Q psy5440 695 DVLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 695 d~LDpALlRpGRFdr~I~i~~ 715 (1036)
+. +..+... -.|..+.+..
T Consensus 181 ~~-~g~~~~~-~~d~~l~l~~ 199 (231)
T 4a74_A 181 AN-GGHILAH-SATLRVYLRK 199 (231)
T ss_dssp -----------CCSEEEEEEE
T ss_pred cC-cchhhHh-hceEEEEEEe
Confidence 43 2222221 3466666654
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.34 E-value=0.00021 Score=79.93 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=50.0
Q ss_pred CCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccceee
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKLERF 203 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~~~~ 203 (1036)
.+..+|+|+.|.+++++.+..+++.++. |...++++||+|| |||++|+++|.+++....+
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 100 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF 100 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc
Confidence 3556799999999999999999888765 3344699999999 9999999999999865333
No 154
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.32 E-value=0.0003 Score=79.05 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=66.5
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhh------hhh--hccCc---------------
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEF------LEM--FVGVG--------------- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~------~e~--~vG~~--------------- 623 (1036)
.+...-++|+||||+|||+||..+|..+ +.+.++++...- ... ..|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3334447999999999999999999863 456777776542 100 01111
Q ss_pred hhHH----HHHHHHhhc--CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 624 PSRV----RDMFSMARK--HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 624 ~~~v----r~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
...+ ..+...++. ..+.+|+||.+..+....-.+. +....+.+.+.+++..+..+....++.||.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1111 222334444 6789999999999875321100 111222334566666655554455666666544
No 155
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.26 E-value=0.00022 Score=71.31 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=33.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
++-|+|+|+||+||||+|+++|..++.+++.++...+.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 456899999999999999999999999999887766544
No 156
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.21 E-value=0.0022 Score=76.36 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=92.7
Q ss_pred cccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEechhh-
Q psy5440 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------NVPFITVSGSEF- 615 (1036)
Q Consensus 544 ~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is~se~- 615 (1036)
....++|.+...++|.+.+... ...++-++|+||+|+|||+||+.++... ...++.++.+..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 4456899998777776654321 1124568999999999999999997532 112444443221
Q ss_pred ----hhhh------cc----------CchhHHHHHHHH-hh-cCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHH
Q psy5440 616 ----LEMF------VG----------VGPSRVRDMFSM-AR-KHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673 (1036)
Q Consensus 616 ----~e~~------vG----------~~~~~vr~lF~~-Ar-~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL 673 (1036)
...+ .+ .....+...+.. .. ...|++|+||+++... .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------HH
Confidence 1111 11 011122222222 22 2368999999996421 11
Q ss_pred HHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEe---cCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCC
Q psy5440 674 VEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV---PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTP 750 (1036)
Q Consensus 674 ~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i---~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~ 750 (1036)
.. + ..+..||.||..+..... .. +..+.+ ...+.++-.++|..++..-. ......+..|++.+.
T Consensus 252 ~~---l--~~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~ 318 (591)
T 1z6t_A 252 KA---F--DSQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECK 318 (591)
T ss_dssp HT---T--CSSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHT
T ss_pred HH---h--cCCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhC
Confidence 11 2 235567777765442211 11 223344 36788889999988875311 112345677888888
Q ss_pred CCC
Q psy5440 751 GFT 753 (1036)
Q Consensus 751 G~S 753 (1036)
|..
T Consensus 319 G~P 321 (591)
T 1z6t_A 319 GSP 321 (591)
T ss_dssp TCH
T ss_pred CCc
Confidence 865
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00029 Score=83.46 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=50.1
Q ss_pred CccceeccccchHHHHHHHHHHHh--cCCchhHHhcCCC---CCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNF--LKNPQQYIDLGAK---IPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~--Lk~P~~~~~lG~~---~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
...+|+||.|.++++++|++.+.- ..+|..|++.|.. .++++||+|| |||++|+++|.+++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999988764 3334556666654 7899999999 99999999999996
No 158
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.14 E-value=0.0066 Score=72.20 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=94.6
Q ss_pred ccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHH----hcCCC---eEEEechhh-----h
Q psy5440 549 AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG----EANVP---FITVSGSEF-----L 616 (1036)
Q Consensus 549 ~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~----eagvp---fi~Is~se~-----~ 616 (1036)
+|.++.+++|.+.+..-. ...++-+.|+|+.|+|||+||+.+++ ..... .+.++.++. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499988888777663311 12245688999999999999999996 23222 123333321 1
Q ss_pred h---h---hccCc-------------hhHHHHHHHHhhcCC-CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHh
Q psy5440 617 E---M---FVGVG-------------PSRVRDMFSMARKHA-PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676 (1036)
Q Consensus 617 e---~---~vG~~-------------~~~vr~lF~~Ar~~a-P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~em 676 (1036)
. . ..+.. ...+...+...-... +++|+||+++... +. . +..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~-~~~- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--R-WAQ- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--H-HHH-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--c-ccc-
Confidence 1 0 01110 111233333333343 7999999997641 11 1 111
Q ss_pred hcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecCCChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCCCCC
Q psy5440 677 DGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753 (1036)
Q Consensus 677 Dg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~G~S 753 (1036)
..+..||.||....... ..+..+..+.++..+.++-.++|..+............+...|++.+.|..
T Consensus 263 -----~~gs~ilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 -----ELRLRCLVTTRDVEISN----AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp -----HTTCEEEEEESBGGGGG----GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred -----cCCCEEEEEcCCHHHHH----HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 14557777776543221 111234668899999999999999885432211223345566777777654
No 159
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.13 E-value=0.00036 Score=76.83 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=44.2
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+|+||.|.+++++.|++.+. ..++|..+|++|| |||++|+++|.+++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~ 74 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNA 74 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTE
T ss_pred CCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC
Confidence 3589999999999999998877 4678899999995 999999999999873
No 160
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.13 E-value=0.00038 Score=71.39 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=38.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech-h-------hhhhhccC-----chhHHHHHHHHhhcCCCeEEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS-E-------FLEMFVGV-----GPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s-e-------~~e~~vG~-----~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
-++++||||+|||+++..++..+ +..++.+... + +.+ ..|. ......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s-~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVS-HSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEe-cCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 47899999999999997766543 5555444322 0 000 0000 0011233443333 24679999
Q ss_pred cCchhh
Q psy5440 645 DEIDAV 650 (1036)
Q Consensus 645 DEIDaL 650 (1036)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999886
No 161
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.13 E-value=0.0029 Score=81.16 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=99.4
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEechh
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA-------NVPFITVSGSE 614 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is~se 614 (1036)
......++|.++..++|.+.+..- ...++-+.|+|+.|+|||+||+.++... ...++.++.+.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 344566899998777777655321 1124558899999999999999998752 12233444332
Q ss_pred h-----h----h---hh---------ccCchhHHHHHHHHhhc--CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHH
Q psy5440 615 F-----L----E---MF---------VGVGPSRVRDMFSMARK--HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQ 671 (1036)
Q Consensus 615 ~-----~----e---~~---------vG~~~~~vr~lF~~Ar~--~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~Lnq 671 (1036)
. . . .. .......+.+.+...-. ..+.+|+||+++...
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------
Confidence 1 1 0 00 01112223333333323 337899999997541
Q ss_pred HHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCcceEEEecC-CChhhHHHHHHHhcCCCCCCCChhhHHHHHhhcCC
Q psy5440 672 LLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPA-PDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTP 750 (1036)
Q Consensus 672 LL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRFdr~I~i~~-Pd~eeR~~IL~~~L~~l~~~l~~~~l~~~LA~~T~ 750 (1036)
.++.+ ..+..||.||..+..... +. .....+.++. .+.++-.++|..+..... .........|++.+.
T Consensus 250 ---~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTT
T ss_pred ---HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhC
Confidence 11212 235577778876543321 11 2245577775 888888999988774332 223345677888888
Q ss_pred CCC
Q psy5440 751 GFT 753 (1036)
Q Consensus 751 G~S 753 (1036)
|..
T Consensus 319 glP 321 (1249)
T 3sfz_A 319 GSP 321 (1249)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 162
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.00076 Score=75.22 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=64.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEechhhhh----hhccCch--------hHHHHH----HHH---hhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA-----NVPFITVSGSEFLE----MFVGVGP--------SRVRDM----FSM---ARK 636 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is~se~~e----~~vG~~~--------~~vr~l----F~~---Ar~ 636 (1036)
-++|+||||+|||+||-.++.++ +..+++++..+-.. .-.|... ....++ .+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 36899999999999988876544 56788888654221 0111111 112222 222 356
Q ss_pred CCCeEEEEcCchhhhhcCC-CCCCCC----ChhHHHHHHHHHHHhhcCcCCCCeEEEEec
Q psy5440 637 HAPCILFIDEIDAVGRKRG-GRNFGG----HSEQENTLNQLLVEMDGFNTTTNVVVLAAT 691 (1036)
Q Consensus 637 ~aP~ILfIDEIDaL~~~r~-~~~~~~----~~e~~~~LnqLL~emDg~~~~~~ViVIaaT 691 (1036)
..|.+|+||-|.++.++.. .+..+. ...+.+.+++.|..|.++....++.||.+-
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 6899999999999975321 111111 112445677777666555556666666553
No 163
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0014 Score=76.45 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=55.7
Q ss_pred cCCCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CC-CeEEEech
Q psy5440 538 SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NV-PFITVSGS 613 (1036)
Q Consensus 538 ~~~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gv-pfi~Is~s 613 (1036)
+.....+|+++- ++.++.+..++..+...+ ..++|.|+||||||+++.+++..+ +. .++.+..+
T Consensus 16 ~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 16 PRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp -----CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 345567888874 344444555555543321 268999999999999999998766 33 44444332
Q ss_pred hh----hhhhccCchhHHHHHHHHh----------------hcCCCeEEEEcCchhh
Q psy5440 614 EF----LEMFVGVGPSRVRDMFSMA----------------RKHAPCILFIDEIDAV 650 (1036)
Q Consensus 614 e~----~e~~vG~~~~~vr~lF~~A----------------r~~aP~ILfIDEIDaL 650 (1036)
.- +....+.....+..++... ......+|+|||+..+
T Consensus 84 ~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 84 HAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMY 140 (459)
T ss_dssp HHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGC
T ss_pred HHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhC
Confidence 11 1112233333444444311 0112469999999876
No 164
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00063 Score=75.30 Aligned_cols=115 Identities=16% Similarity=0.227 Sum_probs=66.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---------------C----CCeEEEechhh--hh----h--hccCc-----
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---------------N----VPFITVSGSEF--LE----M--FVGVG----- 623 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------------g----vpfi~Is~se~--~e----~--~vG~~----- 623 (1036)
.+...-++|+||||+|||+||..+|..+ | .++++++...- .+ . -.|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 3334458999999999999999998753 2 56777776542 11 0 01111
Q ss_pred ----------hhH----HHHHHHHhhc-CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEE
Q psy5440 624 ----------PSR----VRDMFSMARK-HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVL 688 (1036)
Q Consensus 624 ----------~~~----vr~lF~~Ar~-~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVI 688 (1036)
... +..+....+. ..+.+|+||.+..+......+. +...+..+.+.+++..+..+....++.||
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 111 1123333444 5689999999999875321110 11122334566666666655555566666
Q ss_pred Eec
Q psy5440 689 AAT 691 (1036)
Q Consensus 689 aaT 691 (1036)
.+.
T Consensus 254 ~~n 256 (322)
T 2i1q_A 254 VTN 256 (322)
T ss_dssp EEE
T ss_pred EEC
Confidence 653
No 165
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.06 E-value=0.00091 Score=76.93 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=64.7
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---------CCCeEEEechhhhh--------hhccCch-------------
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---------NVPFITVSGSEFLE--------MFVGVGP------------- 624 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---------gvpfi~Is~se~~e--------~~vG~~~------------- 624 (1036)
|+....-++|+||||+|||+|++.++-.. +...++++..+-.. ...|...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 33444458999999999999999776432 23477777654210 0111111
Q ss_pred ------hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 625 ------SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 625 ------~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
..+..+...+....|.+|+||++-.+.+..-.+ .+....+.+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 111222233344679999999998886432111 01123334445556555555444456677776654
No 166
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.04 E-value=0.00067 Score=76.53 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhcC---------CCeEEEechhhh--h----h----------------hccC-
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEAN---------VPFITVSGSEFL--E----M----------------FVGV- 622 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~eag---------vpfi~Is~se~~--e----~----------------~vG~- 622 (1036)
|++...-+.|+||||+|||+|++.++..+. -..++++..+.. . . +...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 333344589999999999999999998762 355777764321 0 0 0000
Q ss_pred chhHHHHHHH----Hhhc-----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 623 GPSRVRDMFS----MARK-----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 623 ~~~~vr~lF~----~Ar~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
.......++. .+.. ..|.+|+|||+-++......+. +....+...+.+++..+..+....++.||.+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 0111122222 2233 5799999999998864321110 1111222335555555544434456667766654
Q ss_pred Cc
Q psy5440 694 VD 695 (1036)
Q Consensus 694 pd 695 (1036)
..
T Consensus 286 ~~ 287 (349)
T 1pzn_A 286 QA 287 (349)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 167
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.02 E-value=0.0017 Score=68.94 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh-------hhhhhccCc-----hhHHHHHHHHhhc----CCCeE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE-------FLEMFVGVG-----PSRVRDMFSMARK----HAPCI 641 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se-------~~e~~vG~~-----~~~vr~lF~~Ar~----~aP~I 641 (1036)
-++++||||+|||+++..++.++ +..++.++... +.+. .|.. .....++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 36889999999999999888765 55666664322 1111 1111 0122455665554 34789
Q ss_pred EEEcCchhh
Q psy5440 642 LFIDEIDAV 650 (1036)
Q Consensus 642 LfIDEIDaL 650 (1036)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 168
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.003 Score=65.87 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=28.9
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
|.....-++|+||||+|||+||..+|..+ +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 33444558999999999999998887643 5677777654
No 169
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.0055 Score=61.40 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|.-|+|+|+||+||||+|+.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987764 444443
No 170
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.0021 Score=68.72 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=34.7
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
...|..++|+||||+||||+|+.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 34567799999999999999999999998777788877663
No 171
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.87 E-value=0.00048 Score=69.31 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
++.|+|+||||+|||++|+++|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999988754
No 172
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.84 E-value=0.00038 Score=76.39 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=27.7
Q ss_pred cCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 171 LGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 171 lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.|.+.|+|+||||| |||+||+|+|.+++..
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999 9999999999999854
No 173
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.75 E-value=0.011 Score=68.70 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh----------------hh---cc-CchhHHHHHHHHh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE----------------MF---VG-VGPSRVRDMFSMA 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e----------------~~---vG-~~~~~vr~lF~~A 634 (1036)
.|.-++++|++|+||||++..+|..+ |..+..+++.-+.. .+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998754 56666666543211 01 11 1223346677777
Q ss_pred hcCCCeEEEEcCc
Q psy5440 635 RKHAPCILFIDEI 647 (1036)
Q Consensus 635 r~~aP~ILfIDEI 647 (1036)
+.....+|+||..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7766789999986
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.75 E-value=0.0012 Score=73.08 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+|+|+.|.++++++|.+.+...+. ....+..|||+|| |||++|+++|.+++..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999999998876532 3456789999999 9999999999998754
No 175
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.75 E-value=0.0017 Score=71.23 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 552 EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 552 eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
++....+.+++..+... ......|.-++|+||||+||||+|++++.+++..++.+|+..+..
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 44455555555554322 122344677999999999999999999998865677888755543
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00071 Score=69.45 Aligned_cols=33 Identities=48% Similarity=0.582 Sum_probs=29.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
..+.++|+||||+||||+++++|+.++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999988654
No 177
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.71 E-value=0.002 Score=69.63 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998643
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0011 Score=69.27 Aligned_cols=38 Identities=29% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHh----cCCCeEEEech
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGE----ANVPFITVSGS 613 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~e----agvpfi~Is~s 613 (1036)
.....-++|+|+||+|||+||..+|.+ .+.++++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 344445899999999999999887643 36777777643
No 179
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.67 E-value=0.0011 Score=66.85 Aligned_cols=33 Identities=36% Similarity=0.604 Sum_probs=29.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
..|.-|+|+|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 346678999999999999999999999988765
No 180
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.65 E-value=0.0059 Score=72.26 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=52.5
Q ss_pred Ce-EEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc--cccHHhhCCCCcceEEEecC
Q psy5440 639 PC-ILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD--VLDKALLRPGRFDRQIFVPA 715 (1036)
Q Consensus 639 P~-ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd--~LDpALlRpGRFdr~I~i~~ 715 (1036)
|. +|+|||...+.... ..+....+..|... ....++.+|.+|.+|. .|+..++. -|...|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998875311 11223333333322 3455899999999987 68888877 7888899999
Q ss_pred CChhhHHHHHH
Q psy5440 716 PDIKGRASIFK 726 (1036)
Q Consensus 716 Pd~eeR~~IL~ 726 (1036)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99888888874
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.61 E-value=0.0055 Score=69.36 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=59.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec-hhhh---------hhhccCchhHHHHHHHHhhcCCCeEEEEcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG-SEFL---------EMFVGVGPSRVRDMFSMARKHAPCILFIDE 646 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~-se~~---------e~~vG~~~~~vr~lF~~Ar~~aP~ILfIDE 646 (1036)
.++|+||+|+||||+.+++++.. +..++.+.- .++. ...++.......+.+..|-...|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 47899999999999999999865 233333321 1111 001122223355677788888999999999
Q ss_pred chhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 647 IDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 647 IDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
+-. ..+...++.... .+..||.++...+.+
T Consensus 205 p~d----------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MRD----------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCS----------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCC----------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 831 133333333322 355688888877644
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.55 E-value=0.0015 Score=65.78 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
..+.-++|.||||+||||+++++++..+.+.+.++..++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3445689999999999999999999888888888776553
No 183
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.54 E-value=0.0013 Score=64.83 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=27.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
-|+|.||||+||||+|+.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886554
No 184
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.52 E-value=0.013 Score=69.99 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=55.0
Q ss_pred eEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCc--cccHHhhCCCCcceEEEecCCC
Q psy5440 640 CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVD--VLDKALLRPGRFDRQIFVPAPD 717 (1036)
Q Consensus 640 ~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd--~LDpALlRpGRFdr~I~i~~Pd 717 (1036)
.+|+|||++.+.... ..+....+.++... ...-+|.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999999886431 12333444444443 4567999999999998 89988887 788889999888
Q ss_pred hhhHHHHHH
Q psy5440 718 IKGRASIFK 726 (1036)
Q Consensus 718 ~eeR~~IL~ 726 (1036)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877763
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.52 E-value=0.0032 Score=68.51 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=28.7
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~ 612 (1036)
|+....-++|.||||+|||+|++.+|..+ |.+++.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44444558999999999999999998854 446666553
No 186
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.51 E-value=0.0015 Score=70.61 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.4
Q ss_pred eccccchHHHHHHHHHHHh-cCCchhHHhc-CCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 143 KDVAGCEEAKVEIMEFVNF-LKNPQQYIDL-GAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~-Lk~P~~~~~l-G~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
++|.|++++++.|...+.- ++.+.....+ +.+.|+++||+|| |||++|+++|.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4699999999999887653 3333222221 2457899999999 9999999999999743
No 187
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.51 E-value=0.0012 Score=66.43 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=27.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
.-|+|+|+||+|||++|+.+|..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 348999999999999999999999998765
No 188
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0065 Score=62.58 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|+||+|+|||||++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999865
No 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.45 E-value=0.0012 Score=66.18 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=28.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
++.|+|+|+||+|||++++++|..++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998877653
No 190
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.45 E-value=0.0048 Score=71.80 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=29.9
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~ 612 (1036)
|.....-++|.|+||+|||+||..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 44444558999999999999999998754 567887774
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.004 Score=66.92 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=33.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh---cCCCeEEEechhhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE---ANVPFITVSGSEFLEM 618 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e---agvpfi~Is~se~~e~ 618 (1036)
+.-|+|+|+||+||||+|+.++.. .|.+++.++...+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 456899999999999999999997 7888887777666543
No 192
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.0018 Score=66.28 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=29.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
..|.-|+|+|+||+||||+|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999999886554
No 193
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.41 E-value=0.0017 Score=64.86 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=26.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
.++|.||||+|||++|+++|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.41 E-value=0.0018 Score=64.14 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=28.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
+..+.|+||||+||||+++.+|+.++.+++ ++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 346899999999999999999999987654 444443
No 195
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.40 E-value=0.0015 Score=66.31 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh-cCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE-ANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e-agvpfi~I 610 (1036)
+..++|+|+||+|||++++.+|.. ++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999998 68776543
No 196
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.40 E-value=0.0019 Score=70.55 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=45.2
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+|+|+.|.+++++.|.+.+..... +.+.++.|||+|| |||++|++++.+++..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999999998876432 1246789999999 9999999999998743
No 197
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.39 E-value=0.016 Score=61.61 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=26.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
..+++.|+||+|||++|-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999999988765 666655554
No 198
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.35 E-value=0.0017 Score=64.37 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
..++|+|+||+||||+++.+|..++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999998753
No 199
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.33 E-value=0.0032 Score=71.04 Aligned_cols=58 Identities=21% Similarity=0.079 Sum_probs=42.3
Q ss_pred eccccchHHHHHHHHHHHh-cC--------------CchhHH---hcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 143 KDVAGCEEAKVEIMEFVNF-LK--------------NPQQYI---DLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~-Lk--------------~P~~~~---~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
++|.|+++||+.|...+.. ++ +|.+-. .-..+.+.++||+|| |||++|+++|.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4589999999999987732 22 222210 123456789999999 9999999999999643
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.31 E-value=0.0046 Score=74.31 Aligned_cols=96 Identities=25% Similarity=0.348 Sum_probs=55.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh----hhhhccCchhHHHHHHHHhh---------cCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF----LEMFVGVGPSRVRDMFSMAR---------KHAPCILF 643 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~----~e~~vG~~~~~vr~lF~~Ar---------~~aP~ILf 643 (1036)
..++|+||||||||+++.+++..+ +.+++.+..+.- +....+.....+..++.... .....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998744 566665543211 11112223333444432111 11347999
Q ss_pred EcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecC
Q psy5440 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATN 692 (1036)
Q Consensus 644 IDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN 692 (1036)
|||+..+. ...+..|+..+ .....+++++-.+
T Consensus 285 IDEasml~--------------~~~~~~Ll~~~---~~~~~lilvGD~~ 316 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLAAV---PPGARVLLVGDTD 316 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHTTS---CTTCEEEEEECTT
T ss_pred EcCccCCC--------------HHHHHHHHHhC---cCCCEEEEEeccc
Confidence 99997762 13455555443 2344566666554
No 201
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.28 E-value=0.0037 Score=69.92 Aligned_cols=36 Identities=36% Similarity=0.478 Sum_probs=31.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
++.++|+||+|+|||+||+++|.+++.+++.++.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457899999999999999999999998888776543
No 202
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.25 E-value=0.002 Score=63.91 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH-hcCCCeEEEec
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAG-EANVPFITVSG 612 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~-eagvpfi~Is~ 612 (1036)
|+-|+|.|+||+||||+|+.++. ..+. ..++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~--~~i~~ 34 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINR 34 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc--EEecH
Confidence 45689999999999999999998 4554 44443
No 203
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.25 E-value=0.0045 Score=69.52 Aligned_cols=56 Identities=18% Similarity=0.025 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHHHHHh-cCCchhH-H-hcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 144 DVAGCEEAKVEIMEFVNF-LKNPQQY-I-DLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 144 DVaG~~eak~el~e~v~~-Lk~P~~~-~-~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
.|.|++++|+.|.+.+.- .+..... . ...+..|++|||+|| |||++|++||.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 379999999999998842 2111110 0 112236789999999 999999999999963
No 204
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.23 E-value=0.0026 Score=63.72 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.++-|+|+|+||+||||+|+.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999998766543
No 205
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.23 E-value=0.0024 Score=68.59 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=28.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
-++|+||||+|||++|+++|.+.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998877654
No 206
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.21 E-value=0.0019 Score=63.22 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=25.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
-|+|+||||+||||+|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888886654
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.21 E-value=0.0096 Score=65.95 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=29.5
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
|.....-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 44445558999999999999999998654 457777764
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.19 E-value=0.0075 Score=69.95 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=30.0
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~ 612 (1036)
|.....-++|+|+||+|||+||..+|..+ +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45545558999999999999999988643 568888775
No 209
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.18 E-value=0.0034 Score=64.23 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
++-|+|+|+||+||||+|+.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877665
No 210
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.17 E-value=0.013 Score=62.14 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=28.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGS 613 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s 613 (1036)
.++|+||+|+|||.+|.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999888777777644
No 211
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0024 Score=63.83 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
|.-|+|+|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999877
No 212
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.14 E-value=0.0023 Score=64.58 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+.-|+|+|+||+||||+|+.+|..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45689999999999999999999998876543
No 213
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.13 E-value=0.0033 Score=62.18 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=26.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
+.|+|+|+||+|||++|+.+|..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458999999999999999999999987664
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.11 E-value=0.0041 Score=62.32 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=31.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
+.-+.|+|++|+||||+++.+++.+ |.|++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999987 999998875443
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.11 E-value=0.0064 Score=59.96 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=38.0
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
-+|+++.|.+++.+.+.+ .|.. .-+++|||+|| |||++|++++.++..
T Consensus 19 ~~~~~~~g~~~~~~~l~~---~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQ---ILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHH---HHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHH---HHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999986665554 4433 34679999999 999999999999854
No 216
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.10 E-value=0.0034 Score=65.20 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+.-|+|.|+||+||||+|+.+|..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999776543
No 217
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.09 E-value=0.0026 Score=65.66 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
|+|+||||+||||+|+.+|.+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998876654
No 218
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.07 E-value=0.0024 Score=66.82 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.+.-|+|+|+||+||||+|+.+|..++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999998776543
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.06 E-value=0.005 Score=65.73 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=36.9
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
-+|+++.|.+.+.+++.+.+..+. ..+..|||+|| |||++|++++..+.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 479999999999999988776642 23578999999 9999999999988754
No 220
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.06 E-value=0.0024 Score=64.54 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
+.-|+|+|+||+||||+|+.+|..++.+++ +..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 456899999999999999999999986654 444443
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.04 E-value=0.0038 Score=67.58 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=42.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC----CCeEEEechhh--h---------hhhccCchhHHHHHHHHhhcCCCeEEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN----VPFITVSGSEF--L---------EMFVGVGPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag----vpfi~Is~se~--~---------e~~vG~~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
.-++|+||+|+||||+++++++... ..++ +....+ . ...+|.....++..+..+-...|.+|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3478999999999999999998642 2222 222111 0 0011112234566677776678999999
Q ss_pred cCc
Q psy5440 645 DEI 647 (1036)
Q Consensus 645 DEI 647 (1036)
||.
T Consensus 105 DEp 107 (261)
T 2eyu_A 105 GEM 107 (261)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.04 E-value=0.0031 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
..++|+|+||+||||+++.+|..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999876543
No 223
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.02 E-value=0.0029 Score=65.27 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
|+|+||||+||||+|+.++.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998887654
No 224
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.01 E-value=0.0059 Score=60.14 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=38.9
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+|+++.|.+++.+++.+. |.. .-++++||+|| |||++|++++.+...
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~---l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQV---LQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHH---HTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHH---Hhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34799999999876666554 333 35789999999 999999999998753
No 225
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.99 E-value=0.0028 Score=63.64 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=17.7
Q ss_pred CceeEEeCCCCCcHHHHHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLLAKAT 599 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAI 599 (1036)
+.-+.|+||+|+|||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 344789999999999999953
No 226
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.98 E-value=0.0032 Score=64.27 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=27.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.++-|+|+|+||+||||+|+.++..++.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345689999999999999999999998766543
No 227
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.97 E-value=0.0034 Score=62.86 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=23.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-|+|+|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 228
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.97 E-value=0.0033 Score=61.99 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
.|+|+|+||+|||++|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.96 E-value=0.002 Score=72.95 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=38.4
Q ss_pred ccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 549 AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 549 ~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+.++.+.+.+.+.+.....+.. ...++|+||||+|||++++++|+.++.+|+.+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 4455666666666554322111 23689999999999999999999999888653
No 230
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0032 Score=67.05 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.|.-|+|+||||+||||+|+.++..++.+++. ..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is--~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS--TGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe--cHHHH
Confidence 46679999999999999999999999876554 44443
No 231
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.0035 Score=65.22 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+..|+|.|+||+||||+|+.+|..++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999776654
No 232
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.93 E-value=0.0087 Score=68.03 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=44.9
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcC----CCeEEEech-hh--------hhh-hccCchhHHHHHHHHhhcCCCeE
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEAN----VPFITVSGS-EF--------LEM-FVGVGPSRVRDMFSMARKHAPCI 641 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eag----vpfi~Is~s-e~--------~e~-~vG~~~~~vr~lF~~Ar~~aP~I 641 (1036)
......++|+||+|+||||+++++++... ..++.+... ++ +.. .+|.....++..+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 33344589999999999999999998652 233333211 11 000 01112223456666776778999
Q ss_pred EEEcCc
Q psy5440 642 LFIDEI 647 (1036)
Q Consensus 642 LfIDEI 647 (1036)
|++||+
T Consensus 213 illdE~ 218 (372)
T 2ewv_A 213 IFVGEM 218 (372)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999998
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.92 E-value=0.0047 Score=64.94 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
+..|+|.|+||+||||+|+.+|..++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776543
No 234
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.92 E-value=0.0041 Score=65.69 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
.+.|+-|+|.||||+||+|.|+.||..++++ .++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 3456778999999999999999999999865 455556553
No 235
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.90 E-value=0.0076 Score=61.43 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=42.3
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+|+|+.|.+++++.|.+.+.. .+.|..+||+|| |||++|++++.+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45799999999999998887753 346778999999 999999999998764
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.89 E-value=0.018 Score=63.77 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhh-----------hh-
Q psy5440 554 AKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFL-----------EM- 618 (1036)
Q Consensus 554 aK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~-----------e~- 618 (1036)
+++.+.+.+..+-.+..-..+....|+-++|+||+|+||||++..+|..+ +..+..+++.-+. +.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 55555554444322221111223456678999999999999999999865 4555555543221 10
Q ss_pred ----h---ccCchhH-HHHHHHHhhcCCCeEEEEcCch
Q psy5440 619 ----F---VGVGPSR-VRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 619 ----~---vG~~~~~-vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
+ .+....+ +.+.+..+....|.+|+||+.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0 0111111 2334555666778899999863
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.84 E-value=0.026 Score=58.73 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=68.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe---ch------hhhhhhc-----------cCc------hhHHHHHH
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVS---GS------EFLEMFV-----------GVG------PSRVRDMF 631 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is---~s------e~~e~~v-----------G~~------~~~vr~lF 631 (1036)
.+++|+++|.|||++|-++|-++ |..+..+. +. .+++.+. -.. ....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47899999999999999998765 66666662 21 2333320 001 23345555
Q ss_pred HHhhc----CCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCCCCc
Q psy5440 632 SMARK----HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRF 707 (1036)
Q Consensus 632 ~~Ar~----~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRpGRF 707 (1036)
..+++ ....+|+|||+-....-+ .-. ...++..+. ....+.-||.|+|.+. ++|+. +-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g-------~l~----~~ev~~~l~--~Rp~~~~vIlTGr~ap---~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD-------YLP----LEEVISALN--ARPGHQTVIITGRGCH---RDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT-------SSC----HHHHHHHHH--TSCTTCEEEEECSSCC---HHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC-------CCC----HHHHHHHHH--hCcCCCEEEEECCCCc---HHHHH--hC
Confidence 55544 346899999997653211 011 122333333 3556788888988764 67766 55
Q ss_pred ceEEEe
Q psy5440 708 DRQIFV 713 (1036)
Q Consensus 708 dr~I~i 713 (1036)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 665554
No 238
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.81 E-value=0.0038 Score=64.89 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.|..|+|.||||+||||+++.+|..++.+++ +..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHH
Confidence 4567999999999999999999999987554 444443
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.76 E-value=0.006 Score=60.70 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
..++|+||||+||||+++.+++.+|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 45899999999999999999998876554 44443
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.76 E-value=0.006 Score=62.50 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
.+.-+.|.||+|+||||+++++++.+|.. .+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 34568999999999999999999998754 4455444
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.75 E-value=0.02 Score=60.24 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||+|+|||||++++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3478999999999999999999764
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.74 E-value=0.025 Score=65.59 Aligned_cols=71 Identities=23% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh----------hhccC----------chhHHHHHHHHh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE----------MFVGV----------GPSRVRDMFSMA 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e----------~~vG~----------~~~~vr~lF~~A 634 (1036)
.|.-++++||+|+||||++..+|..+ +..+..+++.-+.. ...+. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 36678999999999999999998755 55666555432110 00111 111234556666
Q ss_pred hcCCCeEEEEcCch
Q psy5440 635 RKHAPCILFIDEID 648 (1036)
Q Consensus 635 r~~aP~ILfIDEID 648 (1036)
....+.+|+||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66678899999873
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.69 E-value=0.039 Score=60.72 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhcCchhHhhhc-CCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEech
Q psy5440 552 EEAKVEIMEFVNFLKNPQQYIDLG-AKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGS 613 (1036)
Q Consensus 552 eeaK~eL~eiV~~Lk~p~~~~~lG-~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~s 613 (1036)
+.+++.+.+.+..+..+.. .+. ...+.-++|+||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4455666655554333222 111 2245678999999999999999998744 5566666553
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.69 E-value=0.0054 Score=61.36 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=27.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEF 615 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~ 615 (1036)
-|+|.|+||+||||+|+.++..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999775 34555555444
No 245
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.68 E-value=0.012 Score=60.32 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=27.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
.-+.|+||+|+||||+++.+|+ +|.+++ +..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 3478999999999999999998 788775 444443
No 246
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.66 E-value=0.0083 Score=66.14 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+..+|+||.|.+++++.+.... + .| -+.+|||+|| |||++|+++|..+++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~ 72 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEI 72 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCE
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccc
Confidence 35678999999999887643221 1 22 2346999999 9999999999998853
No 247
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.65 E-value=0.0079 Score=60.33 Aligned_cols=31 Identities=23% Similarity=0.056 Sum_probs=27.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVS 611 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is 611 (1036)
-|.|+|+||+||||+|+.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88988765
No 248
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.62 E-value=0.012 Score=62.99 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=40.8
Q ss_pred eeccccchHHHHHHHH----HHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 142 FKDVAGCEEAKVEIME----FVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 142 f~DVaG~~eak~el~e----~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+..+.|.+++.+++.+ ++..++ ..+.+.|+++||+|| |||++|+++|.+++..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4567888888777666 444443 345678999999999 9999999999997743
No 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.58 E-value=0.026 Score=71.77 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.6
Q ss_pred ccChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 549 AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 549 ~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
+|.++..++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89998888887766432 11356899999999999999999863
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.53 E-value=0.007 Score=63.26 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
++|.||||+||+|.|+.||..++++. +|..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998765 5555554
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.0093 Score=64.78 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=40.2
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
...+|+|+.|.+++++.|...+.- .++|. +||+|| |||++|+++|.+..
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------GSMPH-LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------TCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 345799999999999999877642 24454 999999 99999999999864
No 252
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.0067 Score=66.86 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=39.5
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
...+|+||.|.+++++.|...+. . .++|. +||+|| |||++|+++|.+.+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~~-~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK---S--------ANLPH-MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT---C--------TTCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh---c--------CCCCE-EEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999988877653 2 23343 999999 99999999999875
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.51 E-value=0.0091 Score=60.62 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=28.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-CCCeEEEe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-NVPFITVS 611 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is 611 (1036)
++-|.|.|+||+||||+++.++..+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57887765
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.50 E-value=0.01 Score=60.78 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=30.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
..+.-+.|.||+|+||||+++++|+.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 335568899999999999999999987 555456665444
No 255
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.49 E-value=0.016 Score=58.49 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=39.2
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
...+|+|+.|.++++++|.+.+.- + + +..+||+|| |||++|++++.+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER---K--------N-IPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT---T--------C-CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999888877642 1 2 234999999 99999999999864
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.49 E-value=0.0083 Score=62.09 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=26.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
.-+.|+||+|+||||+++.+++.++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999977654
No 257
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.48 E-value=0.012 Score=59.08 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=36.4
Q ss_pred ccceeccccc-hHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 139 GVRFKDVAGC-EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 139 ~vtf~DVaG~-~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
..+|+++.+. ++-++.+..+..|+.+-... -+++++|+|| |||+||++++++..
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPE------EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG------GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcccc------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589998763 33344444444454433222 2579999999 99999999999874
No 258
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.47 E-value=0.0076 Score=62.34 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=26.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.|+|.|+||+||||+|+.+|..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998877554
No 259
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.46 E-value=0.0089 Score=60.88 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=39.2
Q ss_pred ccceeccccch-HHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCE-EAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~-eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
..+|+|+.+.+ ..++.+..+..|+.+... ..-|++++|+|| |||+||++++.++.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999876 333344555566543311 113589999999 999999999998854
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.45 E-value=0.041 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-+.|.||.|+|||||++.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999854
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.45 E-value=0.00065 Score=75.95 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=25.7
Q ss_pred cCCCCCc--eeEEecC---ChhhHHHHHHhhhccceeeeee
Q psy5440 171 LGAKIPK--GAMLTER---NKSRMAQRMLCTAKKLERFLLH 206 (1036)
Q Consensus 171 lG~~~pk--GvLL~Gp---GKt~la~a~a~e~~~~~~~~~~ 206 (1036)
+|+ +|+ .+||+|| |||+||.++|.+.+..+.|+.-
T Consensus 117 LGG-i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 117 GGH-RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp TTE-EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred hCC-CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 444 444 3699999 9999999999986555555554
No 262
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.43 E-value=0.0066 Score=67.87 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=48.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechhhh------hh--hccCchhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFL------EM--FVGVGPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se~~------e~--~vG~~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
..++|+||+|+|||||++++++... .-.+.++...-. .. ++..+..+.+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4589999999999999999999764 235555543211 10 110033466778888888899999999974
No 263
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.36 E-value=0.012 Score=65.33 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=41.8
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+|+.|.+++++.|...+. ..++|..+||+|| |||++|+++|.+..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~-----------~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLS-----------LGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHH-----------HTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CchhhccCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999988774 1467889999999 99999999999876
No 264
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.36 E-value=0.0084 Score=60.62 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=25.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
-|.|.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.34 E-value=0.01 Score=62.74 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
|.-+.|.||+|+||||+++.++..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999998876543
No 266
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.32 E-value=0.0064 Score=62.08 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~e 617 (1036)
-+.|+|++|+||||+++.+|+ .|++++. ..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHH
Confidence 478999999999999999999 8876655 444443
No 267
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.015 Score=64.51 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=40.4
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.+|+|+.|.+++++.|...+. ..++|. +||+|| |||++|+++|++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999998887765 246777 999999 99999999999864
No 268
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.32 E-value=0.011 Score=59.42 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVS 611 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is 611 (1036)
|.|+|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99987654
No 269
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.25 E-value=0.0098 Score=62.21 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=27.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
-++|.|+||+||||+|+.++..++.+++ +..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 3789999999999999999999986554 444443
No 270
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.23 E-value=0.016 Score=56.44 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=37.2
Q ss_pred eccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 143 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+++.|..++.+++.+.+.-+ +.-+.-|||+|| |||++|++++.++.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 36789999999988877654 234567999999 9999999999998653
No 271
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.23 E-value=0.013 Score=59.51 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=27.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
-+.|.|++|+|||++++.+|..++++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999887754
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.17 E-value=0.06 Score=63.72 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=63.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh----hhhh--cc----------------------Cch
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF----LEMF--VG----------------------VGP 624 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~----~e~~--vG----------------------~~~ 624 (1036)
+....-++|.||+|+|||+|++.+++.. |.+.++++..+- .... .| .+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3334458999999999999999999754 445556553321 1000 00 122
Q ss_pred hHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCC
Q psy5440 625 SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRV 694 (1036)
Q Consensus 625 ~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~p 694 (1036)
...+.++..+....|.+|+||=+..+.... ........+..++..+. ..++.||.+++..
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~~------~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhhC------ChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 345666677777889999999666663210 01123445555655553 2355555555544
No 273
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.015 Score=61.95 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=32.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCC--------eEEEechhhhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVP--------FITVSGSEFLE 617 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvp--------fi~Is~se~~e 617 (1036)
.|.-|.|+|++|+||||+|+.++..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 35568999999999999999999999876 34677766643
No 274
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.13 E-value=0.012 Score=63.75 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=39.6
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
...+|+|+.|.+++++.|...+. + .++|. +||+|| |||++|+++|.++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVE---R--------KNIPH-LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTT---T--------TCCCC-EEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHh---C--------CCCCe-EEEECcCCcCHHHHHHHHHHHhc
Confidence 34589999999999988876543 2 34555 999999 99999999999863
No 275
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.13 E-value=0.0056 Score=59.63 Aligned_cols=45 Identities=22% Similarity=0.105 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 144 DVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 144 DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
|+.|.+++.+++.+.+.-+ ++.+..|||+|| |||++|++++.++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA----------AKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 6789999999999887643 134568999999 99999999999887
No 276
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.12 E-value=0.031 Score=65.68 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=30.3
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEech
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGS 613 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~s 613 (1036)
|.....-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44444558999999999999999988754 5678887753
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.06 E-value=0.015 Score=58.94 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|.-|.|+|++|+|||++++.+|.. |++++. ..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHH
Confidence 456899999999999999999998 877654 44443
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.02 Score=61.94 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=40.4
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
..+|+|+.|.+++++.|.+.+. ..++|. +||+|| |||++|+++|.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAK-----------DGNMPH-MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHH-----------SCCCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHH-----------cCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 3579999999999999888764 235676 999999 99999999999864
No 279
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.05 E-value=0.019 Score=63.85 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=42.9
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+|+++.|.+++++.|...+.--+. ..+.|..++|+|| |||+||+++|++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 799999999999888877654221 1356788999999 9999999999999754
No 280
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.012 Score=65.20 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=39.6
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhh
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTA 197 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~ 197 (1036)
..+|+|+.|.+++++.|+..+. -..+.|. +||+|| |||++|+++|++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~----------~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD----------QPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT----------CTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHh----------hCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999988877651 1246777 999999 9999999999965
No 281
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.03 E-value=0.02 Score=63.14 Aligned_cols=46 Identities=13% Similarity=-0.092 Sum_probs=37.9
Q ss_pred ceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 141 tf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.|++|.|.+++++.+...+.- .+++||+|| |||+||+++|.+++..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 578999999999877665432 259999999 9999999999998743
No 282
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.01 E-value=0.033 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999998877764
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.00 E-value=0.032 Score=64.91 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=30.4
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
|.....-++|.|+||+|||+||..+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44444558999999999999999988755 6778877653
No 284
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.03 Score=62.41 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=42.2
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
+..++++.|.+++.++|.+.+.-.. ....|+.|||+|| |||+||++++.++.
T Consensus 16 ~~~p~~l~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 16 LSVFKEIPFREDILRDAAIAIRYFV--------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp HHHCSSCTTCHHHHHHHHHHHHHHH--------TTCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556999999999999988775421 1356789999999 99999999999873
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.99 E-value=0.018 Score=58.56 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=25.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCC--eEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVP--FIT 609 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvp--fi~ 609 (1036)
+.-|+|.|+||+||||+|+.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3458999999999999999999988763 544
No 286
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.90 E-value=0.016 Score=61.92 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
|.-+.|.||||+|||++++.+|..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999876643
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.90 E-value=0.0066 Score=62.04 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=25.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
++-|+|+|+||+||||+++.++..++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998765443
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.87 E-value=0.024 Score=58.32 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+.|+|+||+|+|||+|++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998754
No 289
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.85 E-value=0.02 Score=68.33 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=44.3
Q ss_pred CCccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 137 DIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 137 ~~~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
-..+..+||.|++++++.+.+.+.+ ..+++. .+..+||+|| |||+||++||+.+++.
T Consensus 75 ~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp GGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3456789999999999999887654 111111 3458999999 9999999999999743
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.82 E-value=0.013 Score=65.93 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=30.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
++-++|.||+|+|||+|+..||..++.+++..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998887766543
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.77 E-value=0.0086 Score=61.23 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV 605 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv 605 (1036)
|.-|+|+|+||+||||+|+.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556899999999999999999997643
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.76 E-value=0.026 Score=61.19 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=40.7
Q ss_pred eeccccchHHHHHHHHHHHh----cCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 142 FKDVAGCEEAKVEIMEFVNF----LKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 142 f~DVaG~~eak~el~e~v~~----Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.++|.|++++++.|...+.- +.+|. +++..+||+|| |||++|+++|..+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~-------~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTT-------SCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45788999999999987765 34442 23347999999 9999999999988643
No 293
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.71 E-value=0.011 Score=69.01 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=38.9
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
.+|+||.|+++++.+...+...++.. ++ ..+||+|| |||+||++||.++++.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--------~~-~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--------HL-HSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--------CC-CEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--------CC-cEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 47999999999994333333333221 22 68999999 9999999999999754
No 294
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.70 E-value=0.022 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999999999774
No 295
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.69 E-value=0.013 Score=60.44 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
-|.|+|++|+||||+++.++..+|++++. +.++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHH
Confidence 47899999999999999999988887755 44443
No 296
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.65 E-value=0.017 Score=62.09 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
..+.|+|++|+||||+++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4589999999999999999999999877653
No 297
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.63 E-value=0.018 Score=64.05 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=31.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
.|+-++|.||+|+|||+||..+|...+.++++++.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 35668999999999999999999999887777665443
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.61 E-value=0.024 Score=58.21 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.++-++|+||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356689999999999999999999874
No 299
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.58 E-value=0.085 Score=66.61 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=57.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh-----cCC--Ce--EEE----------echhhhhhhccCchhHHHHHHHHhh-cCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE-----ANV--PF--ITV----------SGSEFLEMFVGVGPSRVRDMFSMAR-KHA 638 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e-----agv--pf--i~I----------s~se~~e~~vG~~~~~vr~lF~~Ar-~~a 638 (1036)
..-++|+||.|+||||+.|.++.- .+. |. ..+ ...+............++.+...++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 345899999999999999998752 222 11 111 1111111111111111222222222 467
Q ss_pred CeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccccHHhhCC
Q psy5440 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRP 704 (1036)
Q Consensus 639 P~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~LDpALlRp 704 (1036)
|++|++||.-+= . .......+...++..+. ...+..+|.+|+..+...-+-..|
T Consensus 753 p~LlLLDEP~~G-----l----D~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 753 QSLVILDELGRG-----T----STHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp TCEEEEESTTTT-----S----CHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGGHHHHTT
T ss_pred CCEEEEeCCCCC-----C----CHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHHHHhhcc
Confidence 899999997421 1 11223334446666552 234667888898877554443344
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.58 E-value=0.069 Score=60.00 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=29.7
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 575 GAKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 575 G~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
|.....-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44444558999999999999999998764 677777764
No 301
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.57 E-value=0.021 Score=58.96 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFL 616 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~ 616 (1036)
..+.-++|.|+||+||||+++.+++.+ |.+++.+++..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 345568999999999999999999865 4678888765543
No 302
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.55 E-value=0.034 Score=57.79 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.++-+.|+||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998653
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.55 E-value=0.024 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
+.-+.|+||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999864
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.54 E-value=0.03 Score=56.30 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=28.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
+.-++|+|+||+||||+++.+|..+ +.++..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4568899999999999999999876 445666654443
No 305
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.47 E-value=0.024 Score=58.44 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=27.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
|..+.|+|++|+|||++++.+|..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999876553
No 306
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.46 E-value=0.019 Score=62.37 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-CCCeEEEechhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-NVPFITVSGSEF 615 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~Is~se~ 615 (1036)
|+-++|.|+||+||||+|+.++... +.+ .++...+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 4568999999999999999999864 544 4444343
No 307
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.45 E-value=0.05 Score=59.73 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=37.2
Q ss_pred Cccceeccc-c--chHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVA-G--CEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVa-G--~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
+.-+|+++. | ...+...++.++ .+|. +.+.++||+|| |||+||++++.++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 456899997 4 344555555444 3442 45779999999 99999999999984
No 308
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.44 E-value=0.066 Score=55.25 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=41.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh--------hhhhhccCc-----hhHHHHHHHHhhcCCCeEEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE--------FLEMFVGVG-----PSRVRDMFSMARKHAPCILF 643 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se--------~~e~~vG~~-----~~~vr~lF~~Ar~~aP~ILf 643 (1036)
+-.+++||+|+|||+.+-.+|.++ +..++.+...- +.+ ..|.. .....++++.+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 346899999999999998888765 55555553110 111 11110 0112356665542 346999
Q ss_pred EcCchhh
Q psy5440 644 IDEIDAV 650 (1036)
Q Consensus 644 IDEIDaL 650 (1036)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999876
No 309
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.42 E-value=0.024 Score=58.59 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=25.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
|.-|.|+|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 45689999999999999999998 7776554
No 310
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.15 Score=53.50 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKATA 600 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA 600 (1036)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999998766554
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.41 E-value=0.016 Score=59.43 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=24.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc-CCCeEE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA-NVPFIT 609 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea-gvpfi~ 609 (1036)
.-+.|+|++|+||||+++.+++.+ +++++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 347899999999999999999987 555443
No 312
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.40 E-value=0.057 Score=65.24 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
+-++++||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 45899999999999988877643
No 313
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.39 E-value=0.24 Score=51.15 Aligned_cols=55 Identities=22% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCccccccccChH-HHHHHHHHHHHhcCchhHhhhcC---CCCceeEEeCCCCCcHHHHHH
Q psy5440 541 IGVRFKDVAGCEE-AKVEIMEFVNFLKNPQQYIDLGA---KIPKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 541 ~~v~F~DV~G~ee-aK~eL~eiV~~Lk~p~~~~~lG~---~~pkGvLL~GPPGTGKTlLAk 597 (1036)
+..+|+|..+... ..+.|.+. -+..|..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4567888655543 33333221 1334444443211 123579999999999998644
No 314
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.37 E-value=0.032 Score=64.27 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~ 615 (1036)
..|.-|+|+|+||+||||+|+.++..++.+++ +..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 34567899999999999999999999876554 44443
No 315
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.33 E-value=0.072 Score=63.21 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=32.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEM 618 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e~ 618 (1036)
|.-|+|+|.||+|||++|+.+|..+ +++...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 4568999999999999999999987 456666777665544
No 316
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.29 E-value=0.15 Score=51.52 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=15.4
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.23 E-value=0.03 Score=58.88 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
..+.-+.|+|++|+|||++++.+|+.+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 344568999999999999999999999987654
No 318
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.21 E-value=0.041 Score=65.15 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=47.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEechh-hhhh-----------hccCchhHHHHHHHHhhcCCCeEEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGSE-FLEM-----------FVGVGPSRVRDMFSMARKHAPCILFI 644 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~se-~~e~-----------~vG~~~~~vr~lF~~Ar~~aP~ILfI 644 (1036)
..+++|+||+|+||||+++++++... ...+.+.... +.-. .++...-.+.++...+-+..|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999999773 3455655432 1100 00112224566677777789999999
Q ss_pred cCc
Q psy5440 645 DEI 647 (1036)
Q Consensus 645 DEI 647 (1036)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 997
No 319
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.16 E-value=0.13 Score=56.95 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=41.3
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
+-.++++.|.+++.++|.+.+.-. +....|..+||+|| |||++|++++.++.+
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346699999999888887755321 12356789999999 999999999999843
No 320
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.16 E-value=0.089 Score=62.24 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=62.8
Q ss_pred CCceeEEeCCCCCcHHHHHHH--HHHhc--CCCeEEEechhhhh------hhccCc------------------------
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKA--TAGEA--NVPFITVSGSEFLE------MFVGVG------------------------ 623 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkA--IA~ea--gvpfi~Is~se~~e------~~vG~~------------------------ 623 (1036)
....++|.||+|+|||+|++. +++.. +-.-+++++.+... ...|..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 344589999999999999999 45533 44566666543110 000000
Q ss_pred ------hhHHHHHHHHhhcCCCeEEEEcCchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCCCccc
Q psy5440 624 ------PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697 (1036)
Q Consensus 624 ------~~~vr~lF~~Ar~~aP~ILfIDEIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~pd~L 697 (1036)
...............|.+|+|||+-++.+.- +.+......+..++..+. . .++.||.+|++.+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 0112223333444668899999997764321 112233345566666553 2 356777788877654
No 321
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.10 E-value=0.032 Score=57.41 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=36.5
Q ss_pred Cccceeccccc---hHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 138 IGVRFKDVAGC---EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 138 ~~vtf~DVaG~---~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+..+|+|+.|- +++.+.|+.++. .+ -++++||+|| |||+||++++.++...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---GD---------GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---TC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999973 344444444432 21 3679999999 9999999999998743
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.07 E-value=0.03 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.+-+.|+||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998753
No 323
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.06 E-value=0.15 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.||.|+|||||++++++..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999854
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.03 E-value=0.029 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+.-+.|+||+|+||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999876
No 325
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.01 E-value=0.037 Score=59.12 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeE
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFI 608 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi 608 (1036)
.-+.|.||+|+||||+++.+|..+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35889999999999999999999987665
No 326
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.00 E-value=0.046 Score=60.34 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=37.3
Q ss_pred cceeccccch-HHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 140 VRFKDVAGCE-EAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 140 vtf~DVaG~~-eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
-+|+|+.+-+ ..++.+..+..|+.+.. ...+++++|+|| |||+||+|+|.++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899998755 32333444555654321 113689999999 99999999999887
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.00 E-value=0.16 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..-+.|+||+|+|||||++.+++..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3458899999999999999999854
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.99 E-value=0.022 Score=62.08 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
|.-|.|+|++|+||||+|+.++ ++|+++ +++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 4568999999999999999999 678765 4455543
No 329
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.93 E-value=0.041 Score=55.41 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=26.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
-++|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999985532 3556655543
No 330
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.91 E-value=0.12 Score=59.72 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=40.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCC---CeEEEech-hhh-h----hhcc-CchhHHHHHHHHhhcCCCeEEEEcCch
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANV---PFITVSGS-EFL-E----MFVG-VGPSRVRDMFSMARKHAPCILFIDEID 648 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagv---pfi~Is~s-e~~-e----~~vG-~~~~~vr~lF~~Ar~~aP~ILfIDEID 648 (1036)
-++|+||+|+||||+++++++.... .++.+.-. ++. . ..+. ...-...+.+..+-...|.++++.||.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 3789999999999999999997742 34433211 110 0 0000 000112334444555679999999963
No 331
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.86 E-value=0.031 Score=62.21 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=28.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGS 613 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s 613 (1036)
+-++|.||+|+|||+||..+|...+..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578999999999999999999988766665544
No 332
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.83 E-value=0.17 Score=51.17 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.5
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 333
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.83 E-value=0.31 Score=50.01 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhc---CCCCceeEEeCCCCCcHHHH
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG---AKIPKGAMLTGPPGTGKTLL 595 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG---~~~pkGvLL~GPPGTGKTlL 595 (1036)
...+|+++.-.+...+.+.+. -+..+..++... +...+.+++.+|+|+|||+.
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 446799986566555555432 133444443321 11235799999999999987
No 334
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.83 E-value=0.15 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999999865
No 335
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.74 E-value=0.03 Score=62.97 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is 611 (1036)
+-|+|.||+|+|||+||+.+|..+++.++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986665544
No 336
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.73 E-value=0.044 Score=56.94 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=41.6
Q ss_pred ceeEEeCCCCCcHH-HHHHHHHH--hcCCCeEEEech---hhhhhh---ccC-----chhHHHHHHHHhhcCCCeEEEEc
Q psy5440 580 KGAMLTGPPGTGKT-LLAKATAG--EANVPFITVSGS---EFLEMF---VGV-----GPSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 580 kGvLL~GPPGTGKT-lLAkAIA~--eagvpfi~Is~s---e~~e~~---vG~-----~~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
+-.++|||.|+||| .|.+++.+ +.+..++.+... .+.+.. .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 34689999999999 88888876 446777777643 221110 000 0011223333332 24699999
Q ss_pred Cchhh
Q psy5440 646 EIDAV 650 (1036)
Q Consensus 646 EIDaL 650 (1036)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99887
No 337
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.71 E-value=0.26 Score=53.85 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=38.1
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcC----CCCceeEEeCCCCCcHHHHHHHHHHhc-----CCCeEEEe
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA----KIPKGAMLTGPPGTGKTLLAKATAGEA-----NVPFITVS 611 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~----~~pkGvLL~GPPGTGKTlLAkAIA~ea-----gvpfi~Is 611 (1036)
.+|+++.-.+...+.|.+. -+..+..++...+ .-.+.+++.+|+|+|||+.+-..+-+. +...+.+.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 5688876555555555432 1333333333211 113579999999999999866544332 34455544
No 338
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.69 E-value=0.23 Score=55.15 Aligned_cols=98 Identities=19% Similarity=0.093 Sum_probs=59.3
Q ss_pred ccceeccccchHHHHHHHHHHHh-cCCchhHHhcCCCCCc--eeEEecC---ChhhHHHHHHhhhccc--eeeeeeeccC
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPK--GAMLTER---NKSRMAQRMLCTAKKL--ERFLLHNINH 210 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~-Lk~P~~~~~lG~~~pk--GvLL~Gp---GKt~la~a~a~e~~~~--~~~~~~~~~~ 210 (1036)
+..++++.|.+++.++|.+.+.- +.+ ..|. .++|+|| |||+||++++.+.... ..++.-+...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 34568999999999988887654 221 2344 8999999 9999999999998653 3344433222
Q ss_pred Cccchhhhhhhcc-cccCCCCC--CCCHHHHHHHHHHHHh
Q psy5440 211 GRYSSFHINNSLA-TLPKSNFP--PTTVESVLHQWRIILS 247 (1036)
Q Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 247 (1036)
. .+..++.+.+. .+. ...| ..+...++++...++.
T Consensus 84 ~-~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 84 Y-RNFTAIIGEIARSLN-IPFPRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp C-CSHHHHHHHHHHHTT-CCCCSSCCCHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHhC-ccCCCCCCCHHHHHHHHHHHHh
Confidence 2 22233333321 221 1111 2345677777666543
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.65 E-value=0.027 Score=58.84 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
.++++|.||+|+|||+||.+++.... +++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999998876 6655443
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.64 E-value=0.1 Score=53.46 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE 614 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se 614 (1036)
+.-+.|+||+|+||||+++.+++.+ +.+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4558899999999999999999865 66666665443
No 341
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.59 E-value=0.81 Score=46.77 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=33.8
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhcC---CCCceeEEeCCCCCcHHHHHHHHHH
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA---KIPKGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~---~~pkGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
.+|+|+.-.++..+.|.+. -+..+..++...+ ...+.+++.+|+|+|||+.+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 4688876555555555431 1333444443211 1135699999999999987665544
No 342
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.56 E-value=0.12 Score=56.91 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=41.0
Q ss_pred CccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
++.+++++.|.++..++|.+.+.-.. -...+..++|+|| |||+||++++++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999988887776553211 1246789999999 99999999999884
No 343
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.50 E-value=0.36 Score=56.93 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..+.-++|+||+|+|||||++.||+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344568899999999999999999865
No 344
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.34 E-value=0.17 Score=64.09 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
.-++|+||.|+||||+.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 345
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.32 E-value=0.072 Score=62.18 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=38.6
Q ss_pred cceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhcc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~ 199 (1036)
-+|++|.|.+++.+.|.+++. . +-+.++||+|| |||++|+++|.++.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~---r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLS---R---------RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHH---C---------SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCccCcHHHHHHHHHHHh---c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999988887766543 2 34568999999 999999999998653
No 346
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.30 E-value=0.046 Score=56.56 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=26.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
-|.|.||+|+|||++++.+|..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 47899999999999999999999999873
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.28 E-value=0.16 Score=58.91 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
.|..++++|+||+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999865 4556666654
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.13 E-value=0.17 Score=59.71 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
..|+.|+|+|+||+||||++.++|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999999654 566666665
No 349
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.10 E-value=0.04 Score=56.42 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
+.-+.|.||+|+|||||++.+++.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999876
No 350
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.05 E-value=0.055 Score=54.82 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=24.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
.-+.|.||+|+|||||++.+++.. |-+.++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~ 38 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL--AEIKISI 38 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS--SSEEECC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC--CCeEEec
Confidence 347899999999999999999985 3444444
No 351
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.02 E-value=0.15 Score=53.64 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=38.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh--------hhhhhccCc-----hhHHHHHHHHhhcCCCeEEEEc
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE--------FLEMFVGVG-----PSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se--------~~e~~vG~~-----~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
.+++||.|+|||+.+-.++..+ +..++.+...- +.+. .|.. .....++++.+.. ...+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~~-~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHITE-EMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCCS-SCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHhc-CCCEEEEE
Confidence 4689999999999988887654 66666554221 1110 0100 0011234444432 34699999
Q ss_pred Cchhh
Q psy5440 646 EIDAV 650 (1036)
Q Consensus 646 EIDaL 650 (1036)
|+.-+
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99886
No 352
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.99 E-value=0.051 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+-+.|.||+|+|||||++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 353
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.94 E-value=0.087 Score=57.90 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=39.6
Q ss_pred eccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 143 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+++.|...+.+++.+.+.... ..+..|||+|| |||++|++++..+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 52 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARS 52 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCS
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCccc
Confidence 468899999999988887642 45679999999 9999999999987643
No 354
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.85 E-value=0.24 Score=57.46 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=45.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEechhhhhh----------------hc-c--Cchh-HHHHHHH
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGSEFLEM----------------FV-G--VGPS-RVRDMFS 632 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~se~~e~----------------~v-G--~~~~-~vr~lF~ 632 (1036)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+... +. + .... .+++.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999988644 667777776532110 00 0 1112 2356666
Q ss_pred HhhcCCCeEEEEcCc
Q psy5440 633 MARKHAPCILFIDEI 647 (1036)
Q Consensus 633 ~Ar~~aP~ILfIDEI 647 (1036)
.++...-.+|+||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666444568998864
No 355
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.85 E-value=0.37 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+-|.||+|+|||||++++++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 37899999999999999999854
No 356
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.79 E-value=0.41 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..-+.|+||+|+|||||++.+++..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3448899999999999999999865
No 357
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.76 E-value=0.61 Score=58.11 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
..-++|+||.|+||||+.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345899999999999999999873
No 358
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.73 E-value=0.067 Score=58.72 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=29.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcCC-----CeEEE-echhh
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEANV-----PFITV-SGSEF 615 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eagv-----pfi~I-s~se~ 615 (1036)
..|.-+.|.||+|+||||||+.+++.++. +.+.+ +...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 44566889999999999999999987752 33444 55554
No 359
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.72 E-value=0.073 Score=64.49 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEF 615 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~ 615 (1036)
.+.-|+|+|+||+||||+|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35568999999999999999999998 999999876544
No 360
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.67 E-value=0.2 Score=62.18 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999987777554
No 361
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.60 E-value=0.33 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|+||+|+|||||++.+++..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.49 E-value=0.055 Score=62.21 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
++-++|.||+|+|||+||..+|..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999877655543
No 363
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.49 E-value=0.37 Score=50.40 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.5
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998744
No 364
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.44 E-value=0.38 Score=49.91 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=29.2
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhc---CCCCceeEEeCCCCCcHHHHHH
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG---AKIPKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG---~~~pkGvLL~GPPGTGKTlLAk 597 (1036)
.+|+++.-.+...+.|.+. .+..+..++... +...+.+++.+|+|+|||+.+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4577775445444444321 123333333211 1113579999999999998543
No 365
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.36 E-value=0.19 Score=55.84 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=28.7
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
...++-++++||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456678999999999999999999855 555665554
No 366
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.35 E-value=0.42 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-+.|+||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 347899999999999999999865
No 367
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.32 E-value=0.018 Score=69.35 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHHHhcCCchhHHhcCCCCCc---------------------------------eeEEecC---ChhhHH
Q psy5440 147 GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPK---------------------------------GAMLTER---NKSRMA 190 (1036)
Q Consensus 147 G~~eak~el~e~v~~Lk~P~~~~~lG~~~pk---------------------------------GvLL~Gp---GKt~la 190 (1036)
+.+-..++++++.++.++|+.|..+...+.. .|||+|| |||+||
T Consensus 265 ~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 265 EVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp CCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHH
T ss_pred cCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHH
Confidence 3333445667777777778777765433332 7999999 999999
Q ss_pred HHHHhhhccce
Q psy5440 191 QRMLCTAKKLE 201 (1036)
Q Consensus 191 ~a~a~e~~~~~ 201 (1036)
+++|..+++..
T Consensus 345 r~la~~~~r~~ 355 (595)
T 3f9v_A 345 QFISRVAPRAV 355 (595)
T ss_dssp HSSSTTCSCEE
T ss_pred HHHHHhCCCce
Confidence 99999998763
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.25 E-value=0.27 Score=54.08 Aligned_cols=35 Identities=34% Similarity=0.230 Sum_probs=27.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
+.-++++|++|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6678899999999999999999765 5566666553
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.17 E-value=0.091 Score=59.30 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=45.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEEech-hhh-----hh--hcc-------C-chhHHHHHHHHhhcCCCe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN--VPFITVSGS-EFL-----EM--FVG-------V-GPSRVRDMFSMARKHAPC 640 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~Is~s-e~~-----e~--~vG-------~-~~~~vr~lF~~Ar~~aP~ 640 (1036)
...++|+||+|+|||||++++++... .-.+.+... ++. .. ++- . ....+++.+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 34689999999999999999999764 234555432 110 00 111 0 122456777777778899
Q ss_pred EEEEcCch
Q psy5440 641 ILFIDEID 648 (1036)
Q Consensus 641 ILfIDEID 648 (1036)
+++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999974
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.16 E-value=0.12 Score=57.00 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999999865
No 371
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.15 E-value=0.34 Score=59.26 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCcHHHHHH-HHHHh---cCCCeEEEe
Q psy5440 579 PKGAMLTGPPGTGKTLLAK-ATAGE---ANVPFITVS 611 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAk-AIA~e---agvpfi~Is 611 (1036)
.+.++++||+|+|||+.+. ++... .+...+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5789999999999999873 33321 244455554
No 372
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.15 E-value=0.069 Score=56.87 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=27.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechhhh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se~~ 616 (1036)
+-|.||||+||||+|+.|+..++++.++ ..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS--TGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee--chHHH
Confidence 5689999999999999999999988664 44443
No 373
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.08 E-value=0.33 Score=58.11 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|+||+|+|||||++.+++..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 48899999999999999999855
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.94 E-value=0.079 Score=54.32 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++-+.|+||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3558999999999999999999865
No 375
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.91 E-value=0.49 Score=62.22 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=24.7
Q ss_pred hcCCCCc--eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 574 LGAKIPK--GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 574 lG~~~pk--GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
+...+|+ -+.|+||+|+|||||++.+.+...
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3334444 488999999999999999999774
No 376
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.84 E-value=0.2 Score=60.80 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS 613 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s 613 (1036)
.|+.||||||||+++-.+...+ +.+++.+..+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 6999999999997655444322 5566655543
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.79 E-value=0.087 Score=54.90 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=21.7
Q ss_pred hcCCCCc--eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 574 LGAKIPK--GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 574 lG~~~pk--GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+...+++ -+.|+||+|+|||||++.+++..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344444 47899999999999999999976
No 378
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.79 E-value=0.065 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=15.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHH-Hhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATA-GEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA-~ea 603 (1036)
.-+.|+||+|+|||||++.++ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 347899999999999999999 765
No 379
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.74 E-value=0.57 Score=48.04 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.4
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 380
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.74 E-value=0.58 Score=48.49 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=30.4
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcC---CCCceeEEeCCCCCcHHHHH
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA---KIPKGAMLTGPPGTGKTLLA 596 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~---~~pkGvLL~GPPGTGKTlLA 596 (1036)
..+|+++.-.++..+.|.+. -+..+..++...+ ...+.+++.+|+|+|||+.+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 46688875555444444321 1333444433211 12357999999999999863
No 381
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.69 E-value=0.16 Score=58.90 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=35.7
Q ss_pred Cccceeccc-cchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 138 IGVRFKDVA-GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 138 ~~vtf~DVa-G~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
+.-+|+++. |..... .+..+..+..+|. + +..+||+|| |||+||+++++++.
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899987 543222 2333334444442 3 779999999 99999999999884
No 382
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.68 E-value=0.11 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCCeEEEechh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSE 614 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~eagvpfi~Is~se 614 (1036)
+|++|++|+|||++|..+|.. +.|.+++.-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
No 383
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.67 E-value=0.27 Score=53.83 Aligned_cols=71 Identities=25% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechh--------h---hhh-----hc---cCch-hHHHHHHHHh
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSE--------F---LEM-----FV---GVGP-SRVRDMFSMA 634 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se--------~---~e~-----~v---G~~~-~~vr~lF~~A 634 (1036)
.++-+.++|++|+|||+++..+|..+ +..+..+++.- + .+. +. +..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999999854 45555554321 1 000 00 0111 2235566666
Q ss_pred hcCCCeEEEEcCch
Q psy5440 635 RKHAPCILFIDEID 648 (1036)
Q Consensus 635 r~~aP~ILfIDEID 648 (1036)
....+.+|+||+--
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 55667899999963
No 384
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.64 E-value=0.18 Score=56.93 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.4
Q ss_pred ceeEEeCCCCCcHHHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKAT 599 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAI 599 (1036)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999955444
No 385
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.60 E-value=0.48 Score=52.76 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=32.4
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcCC---CCceeEEeCCCCCcHHHHHHHHH
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK---IPKGAMLTGPPGTGKTLLAKATA 600 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~---~pkGvLL~GPPGTGKTlLAkAIA 600 (1036)
..+|+|+.-.++..+.|.+. -+..+..++...+. ..+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45788886555555554431 13333333322111 12569999999999998655433
No 386
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.59 E-value=0.12 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.||.|+|||||++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999987
No 387
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.46 E-value=0.49 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-+.|+||+|+|||||++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 348899999999999999999865
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.45 E-value=0.092 Score=55.14 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.1
Q ss_pred CC--ceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 175 IP--KGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 175 ~p--kGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
+| +++|+||| |||++|.|+|....-+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 77 48999999 9999999999998644
No 389
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.43 E-value=0.33 Score=56.48 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=29.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~ 616 (1036)
+.-|+|+|.||+|||++++.+|..++ .+...++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 45689999999999999999998764 556666654443
No 390
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.43 E-value=0.1 Score=55.06 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVP 606 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvp 606 (1036)
-+-|.||+|+|||||++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 37799999999999999999987644
No 391
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.39 E-value=0.21 Score=58.42 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887653
No 392
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.38 E-value=0.43 Score=56.79 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=32.6
Q ss_pred CCCccccccccChHHHHHHHHHHHHh--cCchhHhhhcC-----CCCceeEEeCCCCCcHHHHH
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFL--KNPQQYIDLGA-----KIPKGAMLTGPPGTGKTLLA 596 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~L--k~p~~~~~lG~-----~~pkGvLL~GPPGTGKTlLA 596 (1036)
...++|+++........++.+.+..+ ..+..++.-.+ ...+.+|+.+|+|+|||+.+
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 34567777763333334455444442 33333333211 13567999999999999853
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.35 E-value=0.16 Score=57.56 Aligned_cols=52 Identities=29% Similarity=0.265 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHH-hcCch--hHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 552 EEAKVEIMEFVNF-LKNPQ--QYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 552 eeaK~eL~eiV~~-Lk~p~--~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+.+++.+.+.+.. +.... .--.+....+.-++|+||+|+||||+++.+|+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4455555544443 33222 1112223445568999999999999999999865
No 394
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.35 E-value=0.11 Score=53.42 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||+|+|||||+++|++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999874
No 395
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.31 E-value=0.53 Score=54.44 Aligned_cols=35 Identities=26% Similarity=0.090 Sum_probs=27.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
.|..++++|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 46678899999999999999999855 455555554
No 396
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.27 E-value=0.3 Score=51.07 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=31.9
Q ss_pred CCccccccccChHHHHHHHHHHHHhcCchhHhhhc---CCCCceeEEeCCCCCcHHHHHH
Q psy5440 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG---AKIPKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 541 ~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG---~~~pkGvLL~GPPGTGKTlLAk 597 (1036)
+..+|+++.=.++..+.|.+. -+..+..++... +...+.+++.+|+|+|||+.+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346799985455444444321 133344444321 1123569999999999998643
No 397
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.16 E-value=0.1 Score=55.10 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFIT 609 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~ 609 (1036)
-|.|.|++|||||++|+.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999854
No 398
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.14 E-value=0.71 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=17.3
Q ss_pred CceeEEeCCCCCcHHHHHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLLAKAT 599 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAI 599 (1036)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999866543
No 399
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.10 E-value=1 Score=49.81 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=33.2
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhc---CCCCceeEEeCCCCCcHHHHHHHHHH
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG---AKIPKGAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG---~~~pkGvLL~GPPGTGKTlLAkAIA~ 601 (1036)
.+|+++.-.++..+.|.+. -+..+..++... +...+.+++.+|+|+|||+.+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 4688876555555555431 133344444321 11236799999999999987654443
No 400
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.08 E-value=0.095 Score=57.39 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=25.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC---CCeEEEechhhh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFL 616 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag---vpfi~Is~se~~ 616 (1036)
.-|.|+||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998765 445566665553
No 401
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.07 E-value=0.44 Score=59.04 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
..-++|+||.|+||||+.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999873
No 402
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.06 E-value=0.13 Score=57.04 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 576 AKIPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 576 ~~~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
++....+.|+||+|+|||||++.|++..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3334458899999999999999999987
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.01 E-value=0.052 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 404
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.96 E-value=0.83 Score=51.07 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=32.0
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhhcC---CCCceeEEeCCCCCcHHHHHHHH
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA---KIPKGAMLTGPPGTGKTLLAKAT 599 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~---~~pkGvLL~GPPGTGKTlLAkAI 599 (1036)
..+|+++.=.++..+.|.+. -+..|..++...+ ...+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45688875555555444321 1333443333211 11356999999999999766543
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.89 E-value=0.19 Score=52.95 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC--CCeEEE
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN--VPFITV 610 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag--vpfi~I 610 (1036)
+.-+.|.||||+||||+++.++..++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34578999999999999999999885 455543
No 406
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.84 E-value=0.61 Score=49.71 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=49.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEech-------hhhhhhccCc-----hhHHHHHHHHhhcCCCeEEEEc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGS-------EFLEMFVGVG-----PSRVRDMFSMARKHAPCILFID 645 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~s-------e~~e~~vG~~-----~~~vr~lF~~Ar~~aP~ILfID 645 (1036)
-.+++||.|+|||+.+-..+..+ +..++.+... .+.+.. |.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 36789999999997776665533 5555554321 111110 100 00112345554 234699999
Q ss_pred CchhhhhcCCCCCCCCChhHHHHHHHHHHHhhcCcCCCCeEEEEecCC
Q psy5440 646 EIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693 (1036)
Q Consensus 646 EIDaL~~~r~~~~~~~~~e~~~~LnqLL~emDg~~~~~~ViVIaaTN~ 693 (1036)
|+.-+. . +.+++..++. .++.||++.-+
T Consensus 98 EaQF~~---------------~-v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP---------------D-IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT---------------T-HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh---------------h-HHHHHHHHHh----CCCEEEEEecc
Confidence 998762 1 4555555553 45677777544
No 407
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.75 E-value=0.14 Score=61.56 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=31.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC----CCeEEEechhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN----VPFITVSGSEF 615 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag----vpfi~Is~se~ 615 (1036)
+.-|+|+|+||+||||+|++++..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 45689999999999999999999875 78888875543
No 408
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.73 E-value=0.65 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|+||.|+|||+|.++|+..+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999996544
No 409
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=90.69 E-value=0.43 Score=51.43 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~ 612 (1036)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999877766666666666553
No 410
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.65 E-value=0.22 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..-+++.|++|+|||+|+.++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4469999999999999999998854
No 411
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.40 E-value=0.79 Score=51.46 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=25.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc----CCCeEEEech
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA----NVPFITVSGS 613 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea----gvpfi~Is~s 613 (1036)
+++|..|+|+|||+.+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 68999999999999988876654 5566666543
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.35 E-value=0.82 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998754
No 413
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.35 E-value=0.42 Score=53.25 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999998764
No 414
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.34 E-value=0.62 Score=54.84 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.1
Q ss_pred CceeEEeCCCCCcHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLL 595 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlL 595 (1036)
.+.+|+.+|+|+|||+.
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46799999999999985
No 415
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.30 E-value=0.64 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-|+|.|++|+|||+|+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999999743
No 416
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.10 E-value=0.42 Score=58.27 Aligned_cols=34 Identities=35% Similarity=0.360 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHH-HHHhc--CCCeEEEec
Q psy5440 579 PKGAMLTGPPGTGKTLLAKA-TAGEA--NVPFITVSG 612 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkA-IA~ea--gvpfi~Is~ 612 (1036)
.+.+++++|+|+|||+.+-. +...+ +...+.+..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 45799999999999998843 33222 445555543
No 417
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.00 E-value=0.73 Score=56.20 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=18.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHH
Q psy5440 577 KIPKGAMLTGPPGTGKTLLAKA 598 (1036)
Q Consensus 577 ~~pkGvLL~GPPGTGKTlLAkA 598 (1036)
...+.++++||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3457899999999999998843
No 418
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.93 E-value=0.17 Score=51.70 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCCCe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANVPF 607 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagvpf 607 (1036)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 4433
No 419
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.53 Score=56.87 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+-|.||.|+|||||.+.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999999854
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.81 E-value=0.72 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-+.|.||.|+|||||+++|++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999854
No 421
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.80 E-value=0.53 Score=52.05 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCCccccccccChHHHHHHHHHHHHhcCchhHhhhcCC---CCceeEEeCCCCCcHHHHHH
Q psy5440 540 DIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK---IPKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 540 ~~~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG~~---~pkGvLL~GPPGTGKTlLAk 597 (1036)
....+|+++.=.+...+.|... -+..+..++..... ..+.+++.+|+|+|||+.+-
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456799986555555544432 13344433332111 12569999999999998743
No 422
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.76 E-value=1.1 Score=46.54 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.9
Q ss_pred ceeEEeCCCCCcHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLA 596 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLA 596 (1036)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999864
No 423
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.72 E-value=0.14 Score=56.20 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
+.-+.|.||+|+|||||++.+++.++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999765
No 424
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.71 E-value=0.3 Score=46.95 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q psy5440 581 GAMLTGPPGTGKTLLAKATAG 601 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ 601 (1036)
-++|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999975
No 425
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.70 E-value=1.5 Score=50.69 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=23.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc--------CCCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA--------NVPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea--------gvpfi~Is~ 612 (1036)
+.+++.+|+|+|||+.+-..+-+. +..++.+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 468999999999999876655433 555565554
No 426
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.48 E-value=1.6 Score=48.50 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=29.1
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhhc---CCCCceeEEeCCCCCcHHHHHH
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLG---AKIPKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~lG---~~~pkGvLL~GPPGTGKTlLAk 597 (1036)
.+|+++.-.+...+.|.+. -+..+..++... +-..+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4577765555444444321 123333333211 1113469999999999998754
No 427
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.48 E-value=0.93 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+..|+|.|.+|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.45 E-value=0.49 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-++|+||+|+|||+|++.||+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 38999999999999999998753
No 429
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.44 E-value=0.33 Score=57.28 Aligned_cols=44 Identities=16% Similarity=0.032 Sum_probs=34.2
Q ss_pred eccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 143 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 143 ~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
..|.|.+++++.+...+. ....|||+|| |||+||+++|..+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~ 68 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNA 68 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhh
Confidence 458899988876654332 1248999999 9999999999988654
No 430
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.40 E-value=0.87 Score=48.46 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.4
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 468999999999998654
No 431
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=89.39 E-value=0.73 Score=50.28 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred CccccccccChHHHHHHHHHHHHhcCchhHhhh-----cCCCCceeEEeCCCCCcHHHHH
Q psy5440 542 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDL-----GAKIPKGAMLTGPPGTGKTLLA 596 (1036)
Q Consensus 542 ~v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~l-----G~~~pkGvLL~GPPGTGKTlLA 596 (1036)
..+|+++.-.+...+.|.+. -+..|..++.. -...++.+++++|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35788875555444444321 13334333321 1123578999999999999764
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.35 E-value=0.11 Score=55.53 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc-CCCe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA-NVPF 607 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea-gvpf 607 (1036)
+.-|.|.|++|+||||+++.++..+ +..+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4568999999999999999999998 4333
No 433
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.34 E-value=0.88 Score=48.04 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.6
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 679999999999998643
No 434
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.18 E-value=0.43 Score=53.51 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=25.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVS 611 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is 611 (1036)
+.-|.|+|+||+|||+|+.+++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3458999999999999999998764 44444443
No 435
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.18 E-value=0.2 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
|+-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 436
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.15 E-value=0.22 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
..-+.|.||+|+|||+|+++++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998864
No 437
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.10 E-value=1 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+..|+|.|.||+|||+|+.++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998743
No 438
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.84 E-value=0.79 Score=60.23 Aligned_cols=92 Identities=12% Similarity=0.242 Sum_probs=57.5
Q ss_pred HHhcCCCCCce--eEEecC---ChhhHHHHHHhhhccce-eeeeeeccCCccchhhhhhhcccccCCCC-----------
Q psy5440 168 YIDLGAKIPKG--AMLTER---NKSRMAQRMLCTAKKLE-RFLLHNINHGRYSSFHINNSLATLPKSNF----------- 230 (1036)
Q Consensus 168 ~~~lG~~~pkG--vLL~Gp---GKt~la~a~a~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 230 (1036)
.+.+-..+|+| +.++|| |||+|+++|.++..... .++.-...=..++...+.+++++.+-..+
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 45666777776 789999 99999999999876442 22222222345667777778887753321
Q ss_pred ---CCCCHHHHHHHHHHH----HhcCCCccccccCC
Q psy5440 231 ---PPTTVESVLHQWRII----LSENVPKGFEKFYP 259 (1036)
Q Consensus 231 ---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 259 (1036)
|..|-+++.+--+.- .-++.|.|++-..-
T Consensus 514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred hhcccchHHHHHHHHHHccchhHHHcCCCCCccEec
Confidence 234555555544431 12567999876543
No 439
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.63 E-value=1.1 Score=50.18 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=40.7
Q ss_pred cceeccccchHHHHHHHHHH-Hh-cCCchhHHhcCCCCCceeEE--ecC---ChhhHHHHHHhhhcc
Q psy5440 140 VRFKDVAGCEEAKVEIMEFV-NF-LKNPQQYIDLGAKIPKGAML--TER---NKSRMAQRMLCTAKK 199 (1036)
Q Consensus 140 vtf~DVaG~~eak~el~e~v-~~-Lk~P~~~~~lG~~~pkGvLL--~Gp---GKt~la~a~a~e~~~ 199 (1036)
..++++.|-++..++|.+.+ .- +..+ ..-|..+++ +|| |||+||++++.+...
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 45688999999888888876 43 2221 134678999 999 999999999998754
No 440
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=88.57 E-value=0.4 Score=55.16 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=28.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEEech
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGS 613 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~Is~s 613 (1036)
.+||++|+|+|||.++-+++...+.+++.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999998888888887777654
No 441
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.56 E-value=0.24 Score=54.80 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
+.-+.|.||+|+|||||++.|++.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 4457899999999999999999966
No 442
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.48 E-value=0.25 Score=54.52 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.+.-+.|+||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999865
No 443
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.43 E-value=0.86 Score=58.29 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAKATA 600 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA 600 (1036)
..++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999983
No 444
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.28 E-value=0.33 Score=52.71 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.7
Q ss_pred eeEEecC---ChhhHHHHHHhhhc
Q psy5440 178 GAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 178 GvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
++||||| |||++|+|||..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 8999999 99999999999765
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.22 E-value=0.34 Score=55.15 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHhcC--C-------chhHHh--cCCCCCceeEEecC---ChhhHHHHHHhhhc
Q psy5440 146 AGCEEAKVEIMEFVNFLK--N-------PQQYID--LGAKIPKGAMLTER---NKSRMAQRMLCTAK 198 (1036)
Q Consensus 146 aG~~eak~el~e~v~~Lk--~-------P~~~~~--lG~~~pkGvLL~Gp---GKt~la~a~a~e~~ 198 (1036)
.|..++++.| +-|+|.. . ...+.. +++..++.++|+|| |||+|+++|++..+
T Consensus 129 ~g~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 129 TGSADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CChHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3567788888 6777633 1 222333 47777889999999 99999999998764
No 446
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.22 E-value=0.69 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-+.|.||||+|||||.+++++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999754
No 447
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.18 E-value=0.21 Score=53.22 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||.|+|||||++++++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999998753
No 448
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.17 E-value=0.18 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998664
No 449
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.16 E-value=3 Score=39.63 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHh
Q psy5440 582 AMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 582 vLL~GPPGTGKTlLAkAIA~e 602 (1036)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999864
No 450
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.09 E-value=1.6 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999873
No 451
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=88.07 E-value=0.78 Score=48.11 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.1
Q ss_pred ceeEEeCCCCCcHHHHHH
Q psy5440 580 KGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAk 597 (1036)
+.+++.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 468999999999998543
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.97 E-value=0.2 Score=52.26 Aligned_cols=22 Identities=45% Similarity=0.527 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~e 602 (1036)
-+.|.||.|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 453
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.94 E-value=0.28 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-.+|+||.|+|||+|++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999998765
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.88 E-value=0.37 Score=57.96 Aligned_cols=48 Identities=23% Similarity=0.127 Sum_probs=40.1
Q ss_pred ccceeccccchHHHHHHHHHHHhcCCchhHHhcCCCCCceeEEecC---ChhhHHHHHHhhhccc
Q psy5440 139 GVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTER---NKSRMAQRMLCTAKKL 200 (1036)
Q Consensus 139 ~vtf~DVaG~~eak~el~e~v~~Lk~P~~~~~lG~~~pkGvLL~Gp---GKt~la~a~a~e~~~~ 200 (1036)
..+|+|+.|.+++++.|...+. -...+||+|| |||+||++||+...+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 4589999999999987776654 1248999999 9999999999988755
No 455
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.72 E-value=1.6 Score=54.22 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEec
Q psy5440 578 IPKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSG 612 (1036)
Q Consensus 578 ~pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~ 612 (1036)
.|..+|+.||+|+|||..+-..+-.+ +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45689999999999999876554332 555555554
No 456
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.67 E-value=0.19 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998653
No 457
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.63 E-value=0.31 Score=49.40 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=25.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is 611 (1036)
+-+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 458899999999999999999865 44444443
No 458
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=87.57 E-value=2 Score=49.86 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=23.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc--------CCCeEEEec
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA--------NVPFITVSG 612 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea--------gvpfi~Is~ 612 (1036)
+.+++.+|+|+|||+.+-..+-+. +..++.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 468999999999999876655433 455555544
No 459
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.53 E-value=0.86 Score=54.30 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=31.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEechhhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLE 617 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is~se~~e 617 (1036)
+.-|+|+|++|+||||+|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999876 45777777665543
No 460
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.40 E-value=0.39 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999999999999865
No 461
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.39 E-value=0.66 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
.+-.++.|+||||||++...++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345689999999999999988764
No 462
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.39 E-value=0.6 Score=49.25 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=35.6
Q ss_pred eEEeCCCCCcHHH-HHHHHHH--hcCCCeEEEech-hh------hhhhccCch-----hHHHHHHHHhhcCCCeEEEEcC
Q psy5440 582 AMLTGPPGTGKTL-LAKATAG--EANVPFITVSGS-EF------LEMFVGVGP-----SRVRDMFSMARKHAPCILFIDE 646 (1036)
Q Consensus 582 vLL~GPPGTGKTl-LAkAIA~--eagvpfi~Is~s-e~------~e~~vG~~~-----~~vr~lF~~Ar~~aP~ILfIDE 646 (1036)
.+++||.|+|||+ |.+.+-+ +.+..++.+... +- +....|... ....++++.. .....+|+|||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~IDE 109 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGIDE 109 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEec
Confidence 5889999999999 5555432 335555544321 10 000111100 1112333332 23457999999
Q ss_pred chhh
Q psy5440 647 IDAV 650 (1036)
Q Consensus 647 IDaL 650 (1036)
+.-+
T Consensus 110 aQFf 113 (219)
T 3e2i_A 110 VQFF 113 (219)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 9887
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.38 E-value=0.22 Score=53.70 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998754
No 464
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.32 E-value=0.29 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-++|.|++|+|||+|++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 465
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.23 E-value=0.22 Score=59.59 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=29.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcC----CCeEEEechhhh
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEAN----VPFITVSGSEFL 616 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eag----vpfi~Is~se~~ 616 (1036)
+..+.|+|++|+|||||+++||+.++ ..+..+++..+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 34588999999999999999999874 345556766554
No 466
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.12 E-value=0.22 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.||.|+|||||++++++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.00 E-value=0.28 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.|++|+|||+|++++++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 468
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.97 E-value=2.6 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~e 602 (1036)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 469
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.91 E-value=1.7 Score=43.10 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-|+|.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 470
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=86.89 E-value=0.84 Score=54.27 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=28.4
Q ss_pred cChHHHHHHHHHHHHhcCchhHhhhcCCCCceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 550 GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 550 G~eeaK~eL~eiV~~Lk~p~~~~~lG~~~pkGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
-.+...+.+..++..+.. ..+.+||++|+|+|||..|-+++..
T Consensus 179 lr~~Q~~ai~~~~~~~~~----------~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQ----------GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp CCHHHHHHHHHHHHHHHT----------TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhc----------CCCceEEEecCCCChHHHHHHHHHH
Confidence 344455555555544422 1246899999999999998777654
No 471
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.84 E-value=0.53 Score=49.14 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc---CCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA---NVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea---gvpfi~Is 611 (1036)
+-|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 347788999999999999999866 45665543
No 472
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=86.84 E-value=0.32 Score=51.03 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcCCCeEEE
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEANVPFITV 610 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eagvpfi~I 610 (1036)
.|-|+|..|||||++++.++. +|+|++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 578999999999999999998 88887653
No 473
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.84 E-value=0.26 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998653
No 474
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.78 E-value=0.29 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.||.|+|||||++.+++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.76 E-value=1.2 Score=43.96 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
.-++|.|++|+|||+|.+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999865
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.67 E-value=0.25 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||.|+|||||++++++...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488999999999999999998753
No 477
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.65 E-value=0.35 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.+++.|++|+|||+|+.++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 478
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.62 E-value=0.3 Score=52.12 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=20.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHh
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~e 602 (1036)
-+.|.||.|+|||||++.+++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 479
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.59 E-value=0.23 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998763
No 480
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.51 E-value=0.32 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcCCC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEANVP 606 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eagvp 606 (1036)
.-+.|+||+|+|||||++.|++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458899999999999999999987643
No 481
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.50 E-value=0.26 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 478999999999999999998763
No 482
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.46 E-value=0.26 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||.|+|||||++.|++...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999999764
No 483
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.43 E-value=1.5 Score=57.45 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+-|+||+|+|||||++.+++...
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999998663
No 484
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.29 E-value=1.3 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
.-|+|.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 485
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.27 E-value=0.33 Score=57.46 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=24.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhcCC
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEANV 605 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~eagv 605 (1036)
+..|+|.|.+|+||||+|+++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 486
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.25 E-value=0.28 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++.+++...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998753
No 487
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.23 E-value=0.28 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 378999999999999999998653
No 488
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.22 E-value=2.3 Score=42.84 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.-|+|.|++|+|||+|+.++.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998743
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.17 E-value=0.24 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
.-+.|.||.|+|||||.+++++...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3478999999999999999998653
No 490
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.07 E-value=1.5 Score=48.60 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.3
Q ss_pred CceeEEeCCCCCcHHHHHH
Q psy5440 579 PKGAMLTGPPGTGKTLLAK 597 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAk 597 (1036)
++.+++.+|+|+|||+.+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4679999999999998753
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.05 E-value=0.28 Score=55.47 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
-+.|.||+|+|||||.++||+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999954
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.00 E-value=0.46 Score=50.26 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=22.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHhc-------CCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGEA-------NVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~ea-------gvpfi~Is 611 (1036)
+-|.|.||+|+||||+++.++..+ +.+++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 347888999999999999999876 66665443
No 493
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.97 E-value=1.2 Score=51.26 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=21.5
Q ss_pred ceeEEeCCCCCcHHHHH-HHHHH---hcCCCeEEEe
Q psy5440 580 KGAMLTGPPGTGKTLLA-KATAG---EANVPFITVS 611 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLA-kAIA~---eagvpfi~Is 611 (1036)
+.+|++||+|+|||+.+ .++.. ..+...+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 56899999999999976 44432 2344444444
No 494
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.95 E-value=1.4 Score=50.66 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=31.4
Q ss_pred ccccccccChHHHHHHHHHHHHhcCchhHhhh-----cCCCCceeEEeCCCCCcHHHHH-HHHHH
Q psy5440 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDL-----GAKIPKGAMLTGPPGTGKTLLA-KATAG 601 (1036)
Q Consensus 543 v~F~DV~G~eeaK~eL~eiV~~Lk~p~~~~~l-----G~~~pkGvLL~GPPGTGKTlLA-kAIA~ 601 (1036)
.+|+++.-.++..+.|.+. -+..|..++.. -...++.+|+++|+|+|||+.+ -++..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 4677765555544444321 12333322221 1123578999999999999874 34443
No 495
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.94 E-value=0.25 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++.+++...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998753
No 496
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.91 E-value=0.29 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998653
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.87 E-value=0.39 Score=46.03 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHh
Q psy5440 580 KGAMLTGPPGTGKTLLAKATAGE 602 (1036)
Q Consensus 580 kGvLL~GPPGTGKTlLAkAIA~e 602 (1036)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.86 E-value=0.46 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 579 PKGAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 579 pkGvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
...++|+|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999854
No 499
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.84 E-value=0.29 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhcC
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEAN 604 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~eag 604 (1036)
-+.|.||.|+|||||++++++...
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 500
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.80 E-value=0.34 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHhc
Q psy5440 581 GAMLTGPPGTGKTLLAKATAGEA 603 (1036)
Q Consensus 581 GvLL~GPPGTGKTlLAkAIA~ea 603 (1036)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
Done!