RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5440
(1036 letters)
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 676 bits (1746), Expect = 0.0
Identities = 223/474 (47%), Positives = 325/474 (68%), Gaps = 17/474 (3%)
Query: 533 AKLIN-SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTG 591
A + S + V FKDV G EEA E+ E V FLK+P ++ +GA++PKG +L GPPGTG
Sbjct: 2 ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 592 KTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVG 651
KTLLA+A AGEANVPF +SGS+F+E+FVGVG +RVRD+F+ A+ HAPCI+FIDEIDAVG
Sbjct: 62 KTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
Query: 652 RKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQI 711
R RG GGH E+E TLNQLLVEMDGF++ ++V+AATNR D+LD ALLRPGRFD++I
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 712 FVPAPDIKGRASIFKVHL--KPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769
V PD+ GR I ++H KPL D++ + ++++ TPGF GAD+ N+ NEAAL+AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKR----TPGFVGADLENLVNEAALLAA 237
Query: 770 RDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLK 829
R+ I MK FE+AI+RV+AG +K+ ++ P EK+ +AYHEAGHAV + +P+ +
Sbjct: 238 REGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHR 297
Query: 830 VSIIPRGKG-LGYAQYLPRE-QYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLK 887
+SIIPRG LGY +LP E +YL S+ +LLD++ LGGR +EE+ FG +T+GA +D++
Sbjct: 298 ISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIE 357
Query: 888 KVTQSAYAQVAHFGMNEKVGNVSFDMPQPGEMVL------EKPYSESTAQLIDNEVRSLI 941
+ T+ A V GM+E++G +++ + E+ L + YSE A ID EV+ ++
Sbjct: 358 RATEIARNMVCQLGMSEELGPLAWGKEE-QEVFLGKEITRLRNYSEEVASKIDEEVKKIV 416
Query: 942 SNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELL-GTRPFPEKSTYEE 994
+N Y R K ++ +++ ++ + E LL+KE ++ +++ +L ++ E
Sbjct: 417 TNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEKVVEAAALE 470
Score = 79.1 bits (196), Expect = 2e-15
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 130 AKLIN-SSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
A + S + V FKDV G EEA E+ E V FLK+P ++ +GA++PKG +L
Sbjct: 2 ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILL 54
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 675 bits (1744), Expect = 0.0
Identities = 236/482 (48%), Positives = 320/482 (66%), Gaps = 16/482 (3%)
Query: 521 GGGLFGGVME---STAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK 577
G S A+++ + V FKDVAG EEAK E+ E V FLKNP ++ ++GA+
Sbjct: 6 GPS--DSAFSFTKSRARVL-TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 62
Query: 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKH 637
IPKG +L GPPG GKT LA+A AGEA VPFIT SGS+F+EMFVGVG +RVRD+F A++H
Sbjct: 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRH 122
Query: 638 APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697
APCI+FIDEIDAVGRKRG GG+ E+E TLNQLLVEMDGF T +VV+AATNR D+L
Sbjct: 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 182
Query: 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHL--KPLKTDLDRDDLSRKLAALTPGFTGA 755
D ALLRPGRFDRQI + APD+KGR I ++H KPL D+D L+++ TPGF GA
Sbjct: 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR----TPGFVGA 238
Query: 756 DIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHA 815
D+ N+ NEAAL+AAR+ I MK E+A +RV+ KK+ VL P +++ AYHEAGHA
Sbjct: 239 DLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHA 298
Query: 816 VAGWFLRYADPLLKVSIIPRGKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFF 875
+A FL +AD + KV+I+PRG+ LG+ + +S+++LLD++ + L GR +EEI F
Sbjct: 299 LAAHFLEHADGVHKVTIVPRGRALGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF 358
Query: 876 GRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQPGEMVL---EKPYSESTAQL 932
+TTGAE+D ++ T+ A + +GM+ + G V++ + + + + YSE TA+
Sbjct: 359 DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRE-DTYLGGYDVRQYSEETAKR 417
Query: 933 IDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEILDRNDMIELLGTRPFPEKSTY 992
ID VR LI Y R KALL+E + +E+VAE LL++E L + ++ P
Sbjct: 418 IDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAPEEA 477
Query: 993 EE 994
E
Sbjct: 478 RE 479
Score = 81.9 bits (203), Expect = 3e-16
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 113 RPGRRGGGLFGGVME---STAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYI 169
R GR G S A+++ + V FKDVAG EEAK E+ E V FLKNP ++
Sbjct: 1 RNGRAGPS--DSAFSFTKSRARVL-TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFH 57
Query: 170 DLGAKIPKGAML 181
++GA+IPKG +L
Sbjct: 58 EMGARIPKGVLL 69
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 504 bits (1301), Expect = e-173
Identities = 150/260 (57%), Positives = 200/260 (76%), Gaps = 1/260 (0%)
Query: 541 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATA 600
+GV FKDVAG EAK+E+ EFV++LK+P++++ LGAK+PKGA+L GPPG GKTLLAKA A
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 601 GEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRG-GRNF 659
EA VPF+ ++G+EF+E+ G+G +RVR +F AR APCI++IDEIDAVG+KR +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 660 GGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIK 719
++E+E TLNQLLVEMDG TT +V+VLA+TNR D+LD AL+RPGR DR +F+ P ++
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 720 GRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMK 779
R IF+ HLK LK S++LA LTPGF+GADIAN+CNEAAL AAR+ HT++
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 780 HFEQAIERVVAGMEKKTNVL 799
+FE A+ERV+AG KK+ +L
Sbjct: 241 NFEYAVERVLAGTAKKSKIL 260
Score = 89.2 bits (222), Expect = 1e-19
Identities = 27/44 (61%), Positives = 39/44 (88%)
Query: 138 IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
+GV FKDVAG EAK+E+ EFV++LK+P++++ LGAK+PKGA+L
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALL 44
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 438 bits (1129), Expect = e-147
Identities = 150/266 (56%), Positives = 194/266 (72%), Gaps = 4/266 (1%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLL 595
IN+ VRFKD+AG EEAK E++E V+FLK P++Y +LGAKIPKG +L GPPGTGKTLL
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 596 AKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRG 655
AKA AGEA+VPF ++ GS F+EMFVG+G SRVRD+F A+K AP I+FIDEIDA+G+ R
Sbjct: 61 AKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRA 120
Query: 656 GRNF-GGHSEQENTLNQLLVEMDGFNT-TTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713
G+ E+E TLNQLL EMDGF + V+VLAATNR ++LD AL+RPGRFDRQ+ V
Sbjct: 121 AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180
Query: 714 PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773
PD GR I KVH+K +K D + +++A LT G GAD+AN+ NEAAL+A R+
Sbjct: 181 DKPDFNGRVEILKVHIKGVKLANDVN--LQEVAKLTAGLAGADLANIINEAALLAGRNNQ 238
Query: 774 TTIVMKHFEQAIERVVAGMEKKTNVL 799
+ +H ++A+ER +AG+EKK
Sbjct: 239 KEVRQQHLKEAVERGIAGLEKKLEHH 264
Score = 76.5 bits (189), Expect = 2e-15
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
IN+ VRFKD+AG EEAK E++E V+FLK P++Y +LGAKIPKG +L
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLL 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 421 bits (1084), Expect = e-141
Identities = 153/261 (58%), Positives = 192/261 (73%), Gaps = 6/261 (2%)
Query: 535 LINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
++ I F DVAGC+EAK E+ E V +L+ P ++ LG KIPKG ++ GPPGTGKTL
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LAKA AGEA VPF T+SGS+F+EMFVGVG SRVRDMF A+K APCI+FIDEIDAVGR+R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVP 714
G GGH E+E TLNQ+LVEMDGF ++V+AATNR DVLD ALLRPGRFDRQ+ V
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180
Query: 715 APDIKGRASIFKVHLK--PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772
PD++GR I KVH++ PL D+D ++R TPGF+GAD+AN+ NEAAL AAR
Sbjct: 181 LPDVRGREQILKVHMRRVPLAPDIDAAIIARG----TPGFSGADLANLVNEAALFAARGN 236
Query: 773 HTTIVMKHFEQAIERVVAGME 793
+ M FE+A ++++ G+E
Sbjct: 237 KRVVSMVEFEKAKDKIMMGLE 257
Score = 73.5 bits (181), Expect = 2e-14
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 132 LINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
++ I F DVAGC+EAK E+ E V +L+ P ++ LG KIPKG ++
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLM 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 414 bits (1066), Expect = e-138
Identities = 153/255 (60%), Positives = 189/255 (74%), Gaps = 6/255 (2%)
Query: 533 AKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGK 592
+ + V FKDVAG EEAK E+ E V FLKNP ++ ++GA+IPKG +L GPPG GK
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 593 TLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGR 652
T LA+A AGEA VPFIT SGS+F+EMFVGVG +RVRD+F A++HAPCI+FIDEIDAVGR
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122
Query: 653 KRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIF 712
KRG GG+ E+E TLNQLLVEMDGF T +VV+AATNR D+LD ALLRPGRFDRQI
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 713 VPAPDIKGRASIFKVHLK--PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR 770
+ APD+KGR I ++H + PL D+D L+++ TPGF GAD+ N+ NEAAL+AAR
Sbjct: 183 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKR----TPGFVGADLENLLNEAALLAAR 238
Query: 771 DLHTTIVMKHFEQAI 785
+ I MK E+A
Sbjct: 239 EGRRKITMKDLEEAA 253
Score = 77.0 bits (190), Expect = 1e-15
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 130 AKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
+ + V FKDVAG EEAK E+ E V FLKNP ++ ++GA+IPKG +L
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLL 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 413 bits (1063), Expect = e-137
Identities = 158/282 (56%), Positives = 198/282 (70%), Gaps = 10/282 (3%)
Query: 509 GILPTLLIIGRRGGGLFGGVM---ESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFL 565
G L + + G +S A+++ V FKDVAG EEAK E+ E V FL
Sbjct: 1 GPLGSHMGARNGRAGPSDSAFSFTKSRARVLTE-APKVTFKDVAGAEEAKEELKEIVEFL 59
Query: 566 KNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS 625
KNP ++ ++GA+IPKG +L GPPG GKT LA+A AGEA VPFIT SGS+F+EMFVGVG +
Sbjct: 60 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 119
Query: 626 RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV 685
RVRD+F A++HAPCI+FIDEIDAVGRKRG GG+ E+E TLNQLLVEMDGF T +
Sbjct: 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179
Query: 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLK--PLKTDLDRDDLSR 743
VV+AATNR D+LD ALLRPGRFDRQI + APD+KGR I ++H + PL D+D L++
Sbjct: 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Query: 744 KLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAI 785
+ TPGF GAD+ N+ NEAAL+AAR+ I MK E+A
Sbjct: 240 R----TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277
Score = 77.8 bits (192), Expect = 1e-15
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 109 MMGGRPGRRGGGLFGGVM---ESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNP 165
MG R GR G +S A+++ V FKDVAG EEAK E+ E V FLKNP
Sbjct: 6 HMGARNGRAGPS--DSAFSFTKSRARVLTE-APKVTFKDVAGAEEAKEELKEIVEFLKNP 62
Query: 166 QQYIDLGAKIPKGAML 181
++ ++GA+IPKG +L
Sbjct: 63 SRFHEMGARIPKGVLL 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 328 bits (843), Expect = e-105
Identities = 125/276 (45%), Positives = 172/276 (62%), Gaps = 10/276 (3%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
VR++D+ G E+ EI E V LK+P+ + +G + PKG +L GPPGTGKTLLAKA A
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E N FI V GSE ++ F+G G S V+D+F +A++ AP I+FIDEIDA+ KR GG
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
E + TL QLL EMDGF+ +V ++ ATNR D+LD A+LRPGRFDR I VPAPD KGR
Sbjct: 134 DREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193
Query: 722 ASIFKVHLK--PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMK 779
I K+H + L D++ + ++A +T G GA++ +C EA + A R+L + M
Sbjct: 194 LEILKIHTRKMNLAEDVNLE----EIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249
Query: 780 HFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHA 815
F +A+E++ MEKK ++ V Y H
Sbjct: 250 DFRKAVEKI---MEKKKVKVKEPAHLDVLYRLEHHH 282
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
VR++D+ G E+ EI E V LK+P+ + +G + PKG +L
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILL 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 299 bits (768), Expect = 8e-94
Identities = 104/273 (38%), Positives = 154/273 (56%), Gaps = 30/273 (10%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V ++D+ G E+ K E+ E V + +++P +++ G KG + GPPG GKTLLAKA A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E FI++ G E L M+ G + VR++F AR+ APC+LF DE+D++ + RGG G
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+ +NQ+L EMDG +T NV ++ ATNR D++D A+LRPGR D+ I++P PD K R
Sbjct: 132 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191
Query: 722 ASIFKVHLKPLKTDLDRD-DLSRKLAALTPGFTGADIANVCNEAALIAAR---------- 770
+I K +L+ K+ + +D DL LA +T GF+GAD+ +C A +A R
Sbjct: 192 VAILKANLR--KSPVAKDVDL-EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248
Query: 771 ---------------DLHTTIVMKHFEQAIERV 788
D I HFE+A+
Sbjct: 249 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281
Score = 39.5 bits (93), Expect = 0.004
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
V ++D+ G E+ K E+ E V + +++P +++ G KG +
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 306 bits (786), Expect = 2e-90
Identities = 104/273 (38%), Positives = 154/273 (56%), Gaps = 30/273 (10%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V ++D+ G E+ K E+ E V + +++P +++ G KG + GPPG GKTLLAKA A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E FI++ G E L M+ G + VR++F AR+ APC+LF DE+D++ + RGG G
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+ +NQ+L EMDG +T NV ++ ATNR D++D A+LRPGR D+ I++P PD K R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 722 ASIFKVHLKPLKTDLDRD-DLSRKLAALTPGFTGADIANVCNEAALIAAR---------- 770
+I K +L+ K+ + +D DL LA +T GF+GAD+ +C A +A R
Sbjct: 654 VAILKANLR--KSPVAKDVDL-EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 771 ---------------DLHTTIVMKHFEQAIERV 788
D I HFE+A+
Sbjct: 711 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 743
Score = 248 bits (635), Expect = 7e-70
Identities = 103/265 (38%), Positives = 143/265 (53%), Gaps = 25/265 (9%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V + DV GC + +I E V L++P + +G K P+G +L GPPGTGKTL+A+A A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E F ++G E + G S +R F A K+AP I+FIDE+DA+ KR
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE----KT 316
Query: 662 HSEQENTL-NQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKG 720
H E E + +QLL MDG +V+V+AATNR + +D AL R GRFDR++ + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 721 RASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR------DLHT 774
R I ++H K +K D DL ++A T G GAD+A +C+EAAL A R DL
Sbjct: 377 RLEILQIHTKNMKLADD-VDL-EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 775 -----------TIVMKHFEQAIERV 788
+ M F A+ +
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQS 459
Score = 40.2 bits (94), Expect = 0.004
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
V ++D+ G E+ K E+ E V + +++P +++ G KG +
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516
Score = 38.2 bits (89), Expect = 0.017
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLT 182
V + DV GC + +I E V L++P + +G K P+G +L
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 289 bits (741), Expect = 2e-90
Identities = 98/263 (37%), Positives = 143/263 (54%), Gaps = 22/263 (8%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V + D+ E+ + E+ + ++NP Q+ LG P G +L GPPG GKTLLAKA A
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E+ + FI+V G E L M+VG VR +F A+ APC++F DE+DA+ +R R G
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+NQLL EMDG V ++AATNR D++D A+LRPGR D+ +FV P R
Sbjct: 127 S---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183
Query: 722 ASIFKVHLK-----PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAAR------ 770
+I K K PL D++ + ++ L +TGAD++ + EA++ A R
Sbjct: 184 LAILKTITKNGTKPPLDADVNLEAIAGDLR--CDCYTGADLSALVREASICALRQEMARQ 241
Query: 771 -----DLHTTIVMKHFEQAIERV 788
+ KHFE+A ++V
Sbjct: 242 KSGNEKGELKVSHKHFEEAFKKV 264
Score = 36.4 bits (85), Expect = 0.038
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
V + D+ E+ + E+ + ++NP Q+ LG P G +L
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLL 49
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 280 bits (718), Expect = 3e-84
Identities = 100/268 (37%), Positives = 141/268 (52%), Gaps = 29/268 (10%)
Query: 542 GVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATA 600
V + D+ GC + +I E V L++P + +G K P+G +L GPPGTGKTL+A+A A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 601 GEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG 660
E F ++G E + G S +R F A K+AP I+FIDE+DA+ KR
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE----K 315
Query: 661 GHSEQEN-TLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIK 719
H E E ++QLL MDG +V+V+AATNR + +D AL R GRFDR++ + PD
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 720 GRASIFKVHLK--PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV 777
GR I ++H K L D+D + ++A T G GAD+A +C+EAAL A R I
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE----QVANETHGHVGADLAALCSEAALQAIRKKMDLID 431
Query: 778 -----------------MKHFEQAIERV 788
M F A+ +
Sbjct: 432 LEDETIDAEVMNSLAVTMDDFRWALSQS 459
Score = 41.7 bits (98), Expect = 0.001
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 139 GVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
V + D+ GC + +I E V L++P + +G K P+G +L
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 255 bits (653), Expect = 2e-77
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 23/269 (8%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I V + D+AG + AK + E V P+ + L KG +L GPPG GKTL
Sbjct: 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTL 69
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LA+A A E + F+ +S + +VG G VR +F++AR P I+FIDE+D++ +R
Sbjct: 70 LARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTN---VVVLAATNRVDVLDKALLRPGRFDRQI 711
H + LVE DG + +VVLAATNR LD+A LR RF +++
Sbjct: 130 SS---SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRV 184
Query: 712 FVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARD 771
+V PD + R + L+ + LD + L R+LA +T G++G+D+ + +AAL R+
Sbjct: 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEAL-RRLAKITDGYSGSDLTALAKDAALEPIRE 243
Query: 772 LHTT------------IVMKHFEQAIERV 788
L+ I + F +++R+
Sbjct: 244 LNVEQVKCLDISAMRAITEQDFHSSLKRI 272
Score = 36.5 bits (85), Expect = 0.038
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I V + D+AG + AK + E V P+ + L KG +L
Sbjct: 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLL 59
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 253 bits (647), Expect = 2e-76
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 9/272 (3%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I S V+++DVAG E AK + E V +K P + K G +L GPPGTGK+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 66
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LAKA A EAN F +VS S+ + ++G V+ +F+MAR++ P I+FID++DA+ R
Sbjct: 67 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGF-NTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713
G G +LLV+M+G N + V+VL ATN LD A+ R RF+R+I++
Sbjct: 127 GE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Query: 714 PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773
P PD+ R ++F++++ L ++D R L A+T G++G+DIA V +A + R +
Sbjct: 182 PLPDLAARTTMFEINVGDTPCVLTKEDY-RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240
Query: 774 TTIVMKHFEQAIERVVAGMEKKTNVLQPEEKK 805
+ K + E
Sbjct: 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 272
Score = 32.7 bits (75), Expect = 0.57
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I S V+++DVAG E AK + E V +K P + K G +L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILL 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 250 bits (641), Expect = 2e-75
Identities = 85/254 (33%), Positives = 132/254 (51%), Gaps = 10/254 (3%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I V++ DVAG E AK + E V +K P + +G +L GPPGTGK+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSY 60
Query: 595 LAKATAGEANVP-FITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRK 653
LAKA A EAN F ++S S+ + ++G V+++F +AR++ P I+FIDEID++
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 654 RGGRNFGGHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRVDVLDKALLRPGRFDRQIF 712
R + LV+M G ++VL ATN VLD A+ R RF+++I+
Sbjct: 121 RSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 713 VPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772
+P P+ RA++FK+HL + L D R+L T G++GADI+ + +A + R +
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADF-RELGRKTDGYSGADISIIVRDALMQPVRKV 234
Query: 773 HTTIVMKHFEQAIE 786
+ K
Sbjct: 235 QSATHFKKVRGPSR 248
Score = 33.5 bits (77), Expect = 0.32
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I V++ DVAG E AK + E V +K P + +G +L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILL 50
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase,
hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP:
a.269.1.1
Length = 238
Score = 244 bits (625), Expect = 2e-74
Identities = 79/246 (32%), Positives = 132/246 (53%), Gaps = 17/246 (6%)
Query: 790 AGMEKKTNVLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPRE- 848
G + P+EK+ +A HEAGHA+ G D + K+SIIPRG LG Q LP E
Sbjct: 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIED 61
Query: 849 QYLYSKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYAQVAHFGMNEKV 906
+++Y K+ L +++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY V+ +GM++KV
Sbjct: 62 KHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKV 121
Query: 907 GNVSFDMPQ---PGEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVA 963
G ++ G M S + ID EV+ +I+ Y + KA++ E+K ++ V
Sbjct: 122 GPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVV 181
Query: 964 ERLLKKEILDRNDMIELLGTRPFPEKSTYEEFVEGTGSFEEDTSLPEGLKDWNKDKEVPK 1023
++LL+KE + + +E+ K + L + + ++KE+
Sbjct: 182 KKLLEKETITCEEFVEVFKLYGIELKDK-----------CKKEELFDKDRKSEENKELKS 230
Query: 1024 KTEEKE 1029
+ ++E
Sbjct: 231 EEVKEE 236
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 248 bits (635), Expect = 3e-74
Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 22/268 (8%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I V ++D+AG E AK I E V + + P + L PKG +L GPPGTGKTL
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTL 132
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
+ K A ++ F ++S S +VG G VR +F++AR P ++FIDEID++ +R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTT--NVVVLAATNRVDVLDKALLRPGRFDRQIF 712
G G H + LV++DG T++ ++V+ ATNR +D+A R R ++++
Sbjct: 193 GD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLY 247
Query: 713 VPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772
+P P+ R I + + L +++ ++ + F+GAD+ +C EA+L R L
Sbjct: 248 IPLPEASARKQIVINLMSKEQCCLSEEEI-EQIVQQSDAFSGADMTQLCREASLGPIRSL 306
Query: 773 HTT------------IVMKHFEQAIERV 788
T I FE A V
Sbjct: 307 QTADIATITPDQVRPIAYIDFENAFRTV 334
Score = 35.9 bits (83), Expect = 0.062
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I V ++D+AG E AK I E V + + P + L PKG +L
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILL 122
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 247 bits (631), Expect = 2e-73
Identities = 84/268 (31%), Positives = 142/268 (52%), Gaps = 22/268 (8%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I + V+F D+AG + AK + E V P+ + L +G +L GPPG GKT+
Sbjct: 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTM 163
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LAKA A E+N F +S + +VG G VR +F++AR+ P I+FID++D++ +R
Sbjct: 164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER 223
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTN--VVVLAATNRVDVLDKALLRPGRFDRQIF 712
G H + L+E DG + + V+V+ ATNR LD+A+LR RF ++++
Sbjct: 224 RE---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVY 278
Query: 713 VPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDL 772
V P+ + R + K L + L + +L +LA +T G++G+D+ + +AAL R+L
Sbjct: 279 VSLPNEETRLLLLKNLLCKQGSPLTQKEL-AQLARMTDGYSGSDLTALAKDAALGPIREL 337
Query: 773 HTT------------IVMKHFEQAIERV 788
I + F ++++++
Sbjct: 338 KPEQVKNMSASEMRNIRLSDFTESLKKI 365
Score = 36.0 bits (83), Expect = 0.065
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 133 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I + V+F D+AG + AK + E V P+ + L +G +L
Sbjct: 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLL 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 242 bits (619), Expect = 5e-72
Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 536 INSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
I S V+++DVAG E AK + E V +K P + K G +L GPPGTGK+
Sbjct: 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 99
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LAKA A EAN F +VS S+ + ++G V+ +F+MAR++ P I+FID++DA+ R
Sbjct: 100 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGF-NTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFV 713
G G +LLV+M+G N + V+VL ATN LD A+ R RF+R+I++
Sbjct: 160 GE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 214
Query: 714 PAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLH 773
P PD+ R ++F++++ + L ++D R L A+T G++G+DIA V +A + R +
Sbjct: 215 PLPDLAARTTMFEINVGDTPSVLTKEDY-RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273
Query: 774 TTIVMKHFEQAIERV 788
+ K +
Sbjct: 274 SATHFKDVSTEDDET 288
Score = 32.5 bits (74), Expect = 0.77
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 111 GGRPGRRGGGLFGGVMESTAKLINS----SDIGVRFKDVAGCEEAKVEIMEFVNF-LKNP 165
G G + ++S V+++DVAG E AK + E V +K P
Sbjct: 15 KKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFP 74
Query: 166 Q 166
Sbjct: 75 H 75
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 236 bits (603), Expect = 7e-69
Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 10/257 (3%)
Query: 530 ESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPP 588
I V++ DVAG E AK + E V +K P +G +L GPP
Sbjct: 118 NQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPH-LFTGKRTPWRGILLFGPP 176
Query: 589 GTGKTLLAKATAGEANVP-FITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEI 647
GTGK+ LAKA A EAN F ++S S+ + ++G V+++F +AR++ P I+FIDEI
Sbjct: 177 GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 236
Query: 648 DAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRVDVLDKALLRPGR 706
D++ R + LV+M G ++VL ATN VLD A+ R R
Sbjct: 237 DSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--R 291
Query: 707 FDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAAL 766
F+++I++P P+ RA++F++HL + L D ++L T G++GADI+ + +A +
Sbjct: 292 FEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADF-QELGRKTDGYSGADISIIVRDALM 350
Query: 767 IAARDLHTTIVMKHFEQ 783
R + + K
Sbjct: 351 QPVRKVQSATHFKKVRG 367
Score = 33.8 bits (77), Expect = 0.30
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 127 ESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
I V++ DVAG E AK + E V +K P +G +L
Sbjct: 118 NQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP-HLFTGKRTPWRGILL 172
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 228 bits (584), Expect = 5e-68
Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 30/289 (10%)
Query: 547 DVAGCEEAKVEIMEFVNFLKNPQQYIDL-GAKIPKGAMLTGPPGTGKTLLAKATAGEANV 605
+ G A + + V + + ++ L K+P + G G GK+ + + +
Sbjct: 5 KLDGFYIAPAFMDKLV--VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 606 PFITVSGSEFLEMFVGVGPSRVRDMFSMA----RKHAPCILFIDEIDAVGRKRGGRNFGG 661
I +S E G +R + A RK C LFI+++DA + GG
Sbjct: 63 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYT 122
Query: 662 HSEQENTLNQLL---------VEMDGF---NTTTNVVVLAATNRVDVLDKALLRPGRFDR 709
+ Q +N L V++ G V ++ N L L+R GR ++
Sbjct: 123 VNNQM--VNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 710 QIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAA 769
+ P + R + + + + + F G I A +
Sbjct: 181 FYWAPTRE--DRIGVCTGIFRTDNVPAE------DVVKIVDNFPGQSIDFFGALRARVYD 232
Query: 770 RDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAGHAVAG 818
++ + E+ ++++ + QP+ E G+ +
Sbjct: 233 DEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIE-KLLEYGNMLVQ 280
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 199 bits (509), Expect = 5e-58
Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)
Query: 543 VRFKDVAGCEEAKVEIMEFVN-FLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
+ + +++ ++ + +L GPP +GKT LA A
Sbjct: 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAE 86
Query: 602 EANVPFITVSGSEFLEMFVGVGPSR-VRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFG 660
E+N PFI + + + F + ++ +F A K + +D+I+ +
Sbjct: 87 ESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP----I 142
Query: 661 GHSEQENTLNQLLVEMDGFNTT-TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIK 719
G L LLV + ++++ T+R DVL + F I V P+I
Sbjct: 143 GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIHV--PNIA 199
Query: 720 GRASIFKVHLKPLKTDLDRDDLSRKLAALTPG---FTGADIANVCNEAALIAARDLHTTI 776
+ + + +A G + G + E +L +
Sbjct: 200 TGEQLLEALELLGN--FKDKER-TTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPE----Y 252
Query: 777 VMKHFEQAIE 786
++ F +
Sbjct: 253 RVRKFLALLR 262
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 117 bits (295), Expect = 1e-31
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 717 DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776
D++GRA+IF++H K + + ++ L P TGA++ +VC EA + A R
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIR--WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 59
Query: 777 VMKHFEQAIERVVAGMEKKTNVLQ 800
K F +A+++V++G +K ++ +
Sbjct: 60 TEKDFLKAVDKVISGYKKFSSTSR 83
>2lna_A AFG3-like protein 2; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, MPP, hydrolase; NMR {Homo sapiens}
Length = 99
Score = 115 bits (290), Expect = 8e-31
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 1 MYEMNYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDS 60
+ + +EITWKDF+NN L+KG+V++LEVVNK++VRV PG + ++WFNIGSVD+
Sbjct: 10 HMKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDT 69
Query: 61 FERNLELAQAQMHIDPANYLPVIYKTEIE 89
FERNLE Q ++ I+ N +PV+Y E +
Sbjct: 70 FERNLETLQQELGIEGENRVPVVYIAESD 98
Score = 115 bits (290), Expect = 8e-31
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 415 MYEMNYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLLPGNSMDGANFLWFNIGSVDS 474
+ + +EITWKDF+NN L+KG+V++LEVVNK++VRV PG + ++WFNIGSVD+
Sbjct: 10 HMKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDT 69
Query: 475 FERNLELAQAQMHIDPANYLPVIYKTEIE 503
FERNLE Q ++ I+ N +PV+Y E +
Sbjct: 70 FERNLETLQQELGIEGENRVPVVYIAESD 98
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 111 bits (280), Expect = 2e-29
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 711 IFVPAPDIKGRASIFKVHLKPLKTDLDRD-DLSRKLAALTPGFTGADIANVCNEAALIAA 769
P+ + R I K+H + + L R +L RK+A L PG +GA++ VC EA + A
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMN--LTRGINL-RKIAELMPGASGAEVKGVCTEAGMYAL 62
Query: 770 RDLHTTIVMKHFEQAIERVVAGMEKKT 796
R+ + + FE A+ +V M+K +
Sbjct: 63 RERRVHVTQEDFEMAVAKV---MQKDS 86
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 119 bits (299), Expect = 2e-28
Identities = 59/301 (19%), Positives = 92/301 (30%), Gaps = 60/301 (19%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE- 602
+ G E A+ V +K+ + + +L GPPGTGKT LA A A E
Sbjct: 35 AASGLVGQENAREACGVIVELIKSKK-------MAGRAVLLAGPPGTGKTALALAIAQEL 87
Query: 603 -ANVPFITVSGSEFLEMFVGVGPSRVRDMFSMA---RKHAPCILFIDEIDAVGRKRGGRN 658
+ VPF + GSE + + + F A R ++ E+ +
Sbjct: 88 GSKVPFCPMVGSEVYSTEIK-KTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENP 146
Query: 659 FG-------------GHSEQENTLN-------QLLVEMDGFNTTTNVVVLAATNRVDVLD 698
G ++ L L E + + A + V
Sbjct: 147 MGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE--RVEAGDVIYIEANSGAVKRQG 204
Query: 699 KALLRPGRFDRQI--FVPAPD---IKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFT 753
+ FD + +VP P K + I V L DLD A G
Sbjct: 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH----DLD------VANARPQG-- 252
Query: 754 GADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAG 813
G DI ++ + T + I +VV + E V + +
Sbjct: 253 GQDILSMMGQLMKPK-----KTEITDKLRGEINKVVNKYIDQGIA---ELVPGVLFVDEV 304
Query: 814 H 814
H
Sbjct: 305 H 305
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 105 bits (264), Expect = 2e-27
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 714 PAPDIKGRASIFKVHLKPLKTDLDRD-DLSRKLAALTPGFTGADIANVCNEAALIAARDL 772
P P+ + R I K+H + K +L R +L RK+A L PG +GA++ VC EA + A R+
Sbjct: 1 PPPNEEARLDILKIHSR--KMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALRER 57
Query: 773 HTTIVMKHFEQAIERVVAGMEKKT 796
+ + FE A+ +V M+K +
Sbjct: 58 RVHVTQEDFEMAVAKV---MQKDS 78
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 112 bits (281), Expect = 3e-27
Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 31/246 (12%)
Query: 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAM---LTGPPGTGKTLLAKATAG 601
+++ G + K I E L + LG + TG PGTGKT +A AG
Sbjct: 30 DRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89
Query: 602 E-------ANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
++V+ + + ++G + +++ A +LFIDE + R
Sbjct: 90 LLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPD 146
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPG---RFDRQI 711
R++G + + LL M+ V++ +R++ + PG R I
Sbjct: 147 NERDYG-----QEAIEILLQVMENNRDDLVVILAGYADRMENFFQ--SNPGFRSRIAHHI 199
Query: 712 FVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAAL------TPGFT-GADIANVCNEA 764
P + I L + + L A P F I N + A
Sbjct: 200 EFPDYSDEELFEIAGHMLDDQNYQMT-PEAETALRAYIGLRRNQPHFANARSIRNALDRA 258
Query: 765 ALIAAR 770
L A
Sbjct: 259 RLRQAN 264
Score = 32.8 bits (74), Expect = 0.46
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 142 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAM 180
+++ G + K I E L + LG +
Sbjct: 30 DRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTL 68
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 89.7 bits (223), Expect = 8e-22
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 717 DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTI 776
D + + IF + L + A +GADI ++C E+ ++A R+ +
Sbjct: 2 DRRQKRLIFSTITSKMN--LSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 59
Query: 777 VMKHFEQAIERVVAGMEKK 795
+ K FE+A + V+ E++
Sbjct: 60 LAKDFEKAYKTVIKKDEQE 78
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 83.9 bits (208), Expect = 8e-20
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 721 RASIFKVHLK--PLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVM 778
R IF L + D D L +GA IA + EA L A R I+
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSL----IIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQ 58
Query: 779 KHFEQAIERVVAGMEKKT 796
E+A V
Sbjct: 59 SDLEEAYATQVKTDNTVD 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.1 bits (197), Expect = 3e-15
Identities = 125/748 (16%), Positives = 208/748 (27%), Gaps = 286/748 (38%)
Query: 208 INHGRYS-SFHINNSLATLPKSNFPPTTVESVLHQWRIILSENVPKGFEKFYPDKNKKSA 266
++HG + PT + Q + E+F K
Sbjct: 11 LSHGSLEHVLLV-------------PTASFFIASQLQ-----------EQFN-----KIL 41
Query: 267 EKPKEEGKPSDSTQPPLSKPDLSSSRSG--SSPWNMGVFGGGGGKWRIILSENVPKGFEK 324
+P E D P + +L G SS V G++ +L FE
Sbjct: 42 PEPTEGFAADD---EPTTPAELVGKFLGYVSSL----VEPSKVGQFDQVL-NLCLTEFEN 93
Query: 325 FY-------------PDKNKKSAEKPKE-----------EGKPSDSTQPP-LSKPDLSSS 359
Y +N + K KE +P D L +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAV 149
Query: 360 RSGSSPWNMGVFGGGGGKGGQGSGGKGFGDFSGGDKEKYFMY-GLIGSVAVLAAAVMYEM 418
G++ + +FGG QG+ F + ++ Y Y L+G + +A + E+
Sbjct: 150 GEGNAQL-VAIFGG------QGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 419 NYKEITWKDFINNVLTKGIVEKLEVVNKKWVR-VKLLPGNS-MDGANFLWFNIGSVDSFE 476
+ + T+G L ++ +W+ P + IG
Sbjct: 199 IRTTLDAEKV----FTQG----LNIL--EWLENPSNTPDKDYLLSIPISCPLIG------ 242
Query: 477 RNLELAQAQMHIDPANYLPVIYKTEIELSSLSGILPTLLIIGRRGG-GLFGGVMESTAKL 535
+ Q A+Y+ V K G P L +G G G++ TA
Sbjct: 243 ----VIQL------AHYV-VTAKL-------LGFTPGELRSYLKGATGHSQGLV--TAVA 282
Query: 536 INSSD------------------IGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAK 577
I +D IGVR + I+ + ++
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---------EDSLENNEG 333
Query: 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSG--SEFLEMFVGVGPSRVRDMFSMAR 635
+P ML ++S E ++ +V +
Sbjct: 334 VP-SPML------------------------SISNLTQEQVQDYV-----------NKTN 357
Query: 636 KHAPCILFIDEIDAVGRKRGGRNF--GGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693
H P + + G +N G + LN L + A +
Sbjct: 358 SHLPA----GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK------------AKAPSG 401
Query: 694 VDVLDKALL--RPGRFDRQIFVP--APDIKGRASIFKVH---LKP----LKTDLDRDDLS 742
+D + R +F + F+P +P F H L P + DL ++++S
Sbjct: 402 LDQ-SRIPFSERKLKFSNR-FLPVASP--------F--HSHLLVPASDLINKDLVKNNVS 449
Query: 743 RKLAAL-TP---GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNV 798
+ P F G+D+ R L +I + + I V E T
Sbjct: 450 FNAKDIQIPVYDTFDGSDL------------RVLSGSISERIVDCIIRLPV-KWETTTQ- 495
Query: 799 LQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLPREQYLYSKEQLL 858
+A H + F P S GLG L
Sbjct: 496 -----------FKATHILD--F----GP-GGAS------GLG---------------VLT 516
Query: 859 DRMCMTLGGRVSEEIFFGRITTGAEDDL 886
R G RV I G + +DD
Sbjct: 517 HRNKDGTGVRV---IVAGTLDINPDDDY 541
Score = 62.4 bits (151), Expect = 8e-10
Identities = 107/651 (16%), Positives = 189/651 (29%), Gaps = 279/651 (42%)
Query: 144 DVAGCEE--AKVE-IMEFVNFLKNPQQYIDLGAKIPKGAMLTERNKSRMAQRMLCTA-KK 199
A +E E + +F+ ++ + L E +K ++L +
Sbjct: 47 GFAADDEPTTPAELVGKFLGYV----------------SSLVEPSKVGQFDQVLNLCLTE 90
Query: 200 LER-FLLHN-INHGRYSSFHINNSLATLPKSNFPPTTVESVLHQWRIILSENVPKGFEKF 257
E +L N I H + A L + N TT+ +I + +
Sbjct: 91 FENCYLEGNDI-H----AL-----AAKLLQEN--DTTLVKTK---ELIKN---------Y 126
Query: 258 YPDKNKKSAEKPKEEGKPSDSTQPPLSKPDLSSSRSGSSPWNMGVFGGGGGKWRIILSEN 317
+ A++P + K S+S L + G++ + +FGG G N
Sbjct: 127 I--TARIMAKRPFD--KKSNS---AL----FRAVGEGNAQL-VAIFGGQG---------N 165
Query: 318 VPKGFE------KFYP----DKNKKSAEKPKEEGKPSDSTQP--------------PLSK 353
FE + Y D K SAE E + + + P +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 354 PD---LSSSRSGSSPWNMGVFGGGGGKGGQ--------GSGGKGFGDFSGGDKEKYFMYG 402
PD L S S P GV Q G G+ ++ G
Sbjct: 226 PDKDYLLSI-PISCPLI-GVI--------QLAHYVVTAKLLGFTPGELRS------YLKG 269
Query: 403 LIG-SVAVLAAAVMYEMNYKEITWKDFINNVLTKGIVEKLEVVNKKWV---------RVK 452
G S ++ A + E + +W+ F +V + L ++
Sbjct: 270 ATGHSQGLVTAVAIAETD----SWESFFVSVRK--AITVL-----FFIGVRCYEAYPNTS 318
Query: 453 LLPGNSMDGANFLWFNIGSVDSFE---------RNLELAQAQMHIDPAN-YLPVIYKTEI 502
L P D S+++ E NL Q Q +++ N +LP ++
Sbjct: 319 LPPSILED----------SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQV 366
Query: 503 ELSSLSGILPTLLIIGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFV 562
E+S L+N
Sbjct: 367 EIS-----------------------------LVNG------------------------ 373
Query: 563 NFLKNPQQYIDLGAKIPKGAMLTGPP----GTGKTLL-AKATAG--EANVPF----ITVS 611
+ + ++GPP G TL AKA +G ++ +PF + S
Sbjct: 374 -----AKNLV-----------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 612 GSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQ-----E 666
+ FL + P F H+ L + D + + N +++
Sbjct: 418 -NRFLPVAS---P------F-----HSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 667 NTLNQL-LVEMDGFNTTTNVVVLAATNRVD-----------VLDKALLRPG 705
+T + L + G + + +V V +LD PG
Sbjct: 461 DTFDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHILD---FGPG 507
Score = 56.6 bits (136), Expect = 5e-08
Identities = 62/360 (17%), Positives = 100/360 (27%), Gaps = 141/360 (39%)
Query: 75 DPANYLPVIYKTEIELSSLSGILPTLLIIG--------RSAEMMGGRPG---RRGGGLFG 123
+P+N Y I +S P +IG +A+++G PG G G
Sbjct: 221 NPSNTPDKDYLLSIPIS-----CP---LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 124 ---GVMESTAKLINSSD------------------IGVRFKDVAGCEEAKVEIMEFVNFL 162
G++ TA I +D IGVR + I+
Sbjct: 273 HSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL------ 324
Query: 163 KNPQQYIDLGAKIPKGAMLTERNKSRMAQRMLCTAKKLERFLLHNINHGRYSSFHINNSL 222
+ ++ +P ML+ N ++ ++++ ++ N + + SL
Sbjct: 325 ---EDSLENNEGVP-SPMLSISNLTQ---------EQVQDYVNK-TNSHLPAGKQVEISL 370
Query: 223 ATLPKSNF----PPTTVESV---LH---------QWRIILSENVPKGFEKFYP------- 259
K N PP ++ + L Q RI SE K +F P
Sbjct: 371 VNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 260 -------DKNKKSAEKPKEEGKPSDSTQPPLSKP--------DLSSSRSGSSP------- 297
D K K D + P DL S
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 298 -----W----NMG-----VFGGGG-------------GKW-RIILSENVPKGFEKFYPDK 329
W FG GG G R+I++ + + Y K
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 50.8 bits (121), Expect = 3e-06
Identities = 61/382 (15%), Positives = 115/382 (30%), Gaps = 136/382 (35%)
Query: 612 GSEFLEMFVGVG------PSRVRDMFSMARKHAPCIL-F-IDEIDAVGRKRGGRNFGGHS 663
GS+ G+G +D+++ A H F I +I +FGG
Sbjct: 1625 GSQE----QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 664 EQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRAS 723
+ + + M F T VD K +IF + +
Sbjct: 1681 GKR--IRENYSAMI-FETI-----------VDGKLKT--------EKIF-KEINEHSTSY 1717
Query: 724 IFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQ 783
F+ ++ LS T FT + AL E+
Sbjct: 1718 TFR-S--------EKGLLS-----ATQ-FT---------QPALTLM------------EK 1741
Query: 784 AIERVVAGMEKKTNVLQPEEKKTVAYHEAGH---------AVAGWFLRYADPLLK-VSII 833
A ++ K + P + + AGH ++A + L++ V
Sbjct: 1742 AAFED---LKSKGLI--PADA---TF--AGHSLGEYAALASLAD-VMSIES-LVEVVFY- 1788
Query: 834 PRGKGLGYAQYLPREQYLYSKEQLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSA 893
RG + A +PR++ S M GRV+ + +++ L+ V +
Sbjct: 1789 -RGMTMQVA--VPRDELGRSNY----GMIAINPGRVAA--------SFSQEALQYVVERV 1833
Query: 894 YA------QVAHFGMNEKVGNVSFDMPQPGE-MVLEKPYS-ESTAQLIDNEVRSLISNAY 945
++ ++ NV + V + + A +D L
Sbjct: 1834 GKRTGWLVEIVNY-------NV------ENQQYVA----AGDLRA--LDTVTNVLNFIKL 1874
Query: 946 TRTKALLIEHKASVEKVAERLL 967
+ + ++ S+E+V L
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHLF 1896
Score = 44.7 bits (105), Expect = 2e-04
Identities = 48/322 (14%), Positives = 89/322 (27%), Gaps = 122/322 (37%)
Query: 380 QGSGGKGFGDFSGGDKEKYFMYGLIGSVAVLAAAVMYEMNYKEITWK---DFINNVLTKG 436
QGS +G G + Y AA +++ W + +
Sbjct: 1624 QGSQEQGMG------MDLY---------KTSKAA-------QDV-WNRADNHFKDTYGFS 1660
Query: 437 IVEKLEVVNKKWVRVKLLPG-----------NSMDGANFLWFNIGSVDSFERNLELAQAQ 485
I L++V V + + G ++M + + + F+ E + +
Sbjct: 1661 I---LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 486 MHIDPANYL-------PVIYKTEI------------------------E---LSSLSGIL 511
L P + E E L+SL+ ++
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 512 P---TLLIIGRRG------------GGLFGGVMESTAKLINSSDIGVRFKD------VAG 550
+ ++ RG G G++ A IN + F V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---A--INPGRVAASFSQEALQYVVER 1832
Query: 551 CEEAKVEIMEFVNFLKN--PQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI 608
+ ++E VN+ N QQY+ G L A T + FI
Sbjct: 1833 VGKRTGWLVEIVNY--NVENQQYV-----------AAG------DLRALDTVTNV-LNFI 1872
Query: 609 TVSGSEFLEMFVGVGPSRVRDM 630
+ + +E+ + V
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 3e-04
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 90 LSSLSGILP---TLLII---GRSAEMM--GGRPGRRGGGLFGGVMESTAKLINSSDIGVR 141
L+SL+ ++ + ++ G + ++ GR G+ A + +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 142 FKDVAGCEEAKVEIMEFVNFLKN--PQQYI---DLGA 173
+ V VEI VN+ N QQY+ DL A
Sbjct: 1830 VERVGKRTGWLVEI---VNY--NVENQQYVAAGDLRA 1861
Score = 39.6 bits (92), Expect = 0.006
Identities = 55/340 (16%), Positives = 92/340 (27%), Gaps = 141/340 (41%)
Query: 529 MESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNF------LKNPQQYIDL-----GAK 577
M+ L +S +DV A + F + NP G +
Sbjct: 1633 MD----LYKTSKA---AQDV--WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 578 IPKG--AML--TGPPGTGKTLLAKATAGEANVPFITVSGS-EFLE--------MFVGVGP 624
I + AM+ T G KT E + T L + +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPALTL---- 1738
Query: 625 SRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRN----FGGHSEQENTLNQLLVEMDGFN 680
A F + +G F GHS E
Sbjct: 1739 ------MEKA-------AF-----EDLKSKGLIPADATFAGHSLGEYA------------ 1768
Query: 681 TTTNVVVLAATNRV----DVLDKALLRP-GRFDRQIFVPAPDIKGRASIFKVHLKPLKTD 735
LA+ V +++ ++ G Q+ VP D GR++
Sbjct: 1769 ------ALASLADVMSIESLVE--VVFYRGMT-MQVAVPR-DELGRSNY----------- 1807
Query: 736 LDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKK 795
+ A+ PG A + ++A++ VV + K+
Sbjct: 1808 --------GMIAINPGRVAASFS-----------------------QEALQYVVERVGKR 1836
Query: 796 TN-VLQP-----EEKKTVAYHEAGHAVAGWFLRYADPLLK 829
T +++ E ++ VA AG A L +L
Sbjct: 1837 TGWLVEIVNYNVENQQYVA---AGDLRA---LDTVTNVLN 1870
Score = 37.3 bits (86), Expect = 0.029
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 69/178 (38%)
Query: 10 TWKDFINNVLTKGIVEKLEVVNKKWV---------RVKLLPGNSMDGANFLWFNIGSVDS 60
+W+ F +V + L ++ L P D S+++
Sbjct: 288 SWESFFVSVRK--AITVL-----FFIGVRCYEAYPNTSLPPSILED----------SLEN 330
Query: 61 FE---------RNLELAQAQMHIDPAN-YLPVIYKTEIELSSLSGILPTLLIIGRSAEMM 110
E NL Q Q +++ N +LP ++E+S L+ G ++
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEIS---------LVNGAKNLVV 379
Query: 111 GGRPGRRGGGLFGGVMESTAKLINSSDIGVR-FKDVAGCEEAKVEIME----FVN-FL 162
G P +S L ++ +R K +G +++++ E F N FL
Sbjct: 380 SGPP------------QSLYGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 7e-12
Identities = 78/466 (16%), Positives = 146/466 (31%), Gaps = 139/466 (29%)
Query: 389 DFSGGDKEKYFMYGLIGSVAVLAAAVMYEMNYKEITWKDFINNVLTKGIVEKLEVVNKKW 448
DF G E + Y I ++V A + + K++ +D ++L+K ++ ++ K
Sbjct: 8 DFETG--EHQYQYKDI--LSVFEDAFVDNFDCKDV--QDMPKSILSKEEID--HIIMSK- 58
Query: 449 VRVKLLPGNSMDGANFLWFNIGSVDSFERNLELAQAQMHIDPA---NY--LPVIYKTEIE 503
+++ G L + E Q ++ NY L KTE
Sbjct: 59 --------DAVSGTLRL------FWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 504 LSSLSGILPTLLIIGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVN 563
S+ T + I +R +L N + + F V ++
Sbjct: 104 QPSM----MTRMYIEQRD------------RLYNDNQV---FAKY------NVSRLQPYL 138
Query: 564 FLKN------PQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANV----PF----IT 609
L+ P + + ++ G G+GKT +A V F +
Sbjct: 139 KLRQALLELRPAKNV----------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 610 V----SGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQ 665
+ S LEM + + S + + L I I A R R +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELR--RLL----KS 240
Query: 666 ENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFD---------RQIFVPAP 716
+ N LLV + +V + F+ R V
Sbjct: 241 KPYENCLLV-LL-----------------NVQNAKAWNA--FNLSCKILLTTRFKQV--T 278
Query: 717 DIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEA--------ALIA 768
D A+ + L L D+ + L + ++ E ++IA
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE-VKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 769 A--RDLHTTIVMKHFEQ-AIERVVAGMEKKTNVLQPEEKKTVAYHE 811
RD T +++ +++ +E NVL+P E + + +
Sbjct: 335 ESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDR 377
Score = 59.5 bits (143), Expect = 5e-09
Identities = 65/367 (17%), Positives = 117/367 (31%), Gaps = 111/367 (30%)
Query: 1 MYEMNYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLL---PGNS-----MDGA---- 48
MY ++ + D N V K V +L+ K +R LL P + + G+
Sbjct: 111 MYI-EQRDRLYND--NQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 49 ---------------NF--LWFNIGSVDSFERNLELAQA-QMHIDPANYLPVIYKTEIEL 90
+F W N+ + +S E LE+ Q IDP N+ T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NW------TSRSD 218
Query: 91 SSLSGILPTLLIIGRSAEMMGGRPGRRGGGLFGGVME--STAKLINSSDIGV------RF 142
S + L I ++ +P L V+ AK N+ ++ RF
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYEN--CLL--VLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 143 KDVA----GCEEAKVEIME-------------FVNFLKNPQQYIDLGAKIPKG-----AM 180
K V + + + +L Q DL ++ ++
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSI 332
Query: 181 LTERNKSRMA-----QRMLCTAKKLERFLLHNINH-------GRYSSFHINNSLATLPKS 228
+ E + +A + + C KL + ++N + + P S
Sbjct: 333 IAESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSV------FPPS 384
Query: 229 NFPPTTVESVLHQWRIILSENVPKGFEKFYPDKNKKS-AEKPKEEGKPS------DSTQP 281
PT + S++ W ++ +V K + K S EK +E S +
Sbjct: 385 AHIPTILLSLI--WFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLELKVK 438
Query: 282 PLSKPDL 288
++ L
Sbjct: 439 LENEYAL 445
Score = 55.6 bits (133), Expect = 8e-08
Identities = 81/524 (15%), Positives = 151/524 (28%), Gaps = 178/524 (33%)
Query: 309 KWRIILSENVPKGFEKFYPDKNKKSAEKPKEEGKPSDSTQPPLSKPDL-----SSSRSGS 363
+++ ILS F + + K + D + LSK ++ S
Sbjct: 17 QYKDILSVFEDA----FVDNFDCKDVQ---------DMPKSILSKEEIDHIIMSKDAVSG 63
Query: 364 SPWNMGVFGGGGGKGGQGSGGKGFGDFSGGDKEKY-FMYGLIGSVAVLAAA--VMYEMNY 420
+ Q + F + Y F+ I + + MY
Sbjct: 64 TLRLFWTL-----LSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQ 115
Query: 421 KEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLL---PGNS-----MDGA---------- 462
++ + D N V K V +L+ K +R LL P + + G+
Sbjct: 116 RDRLYND--NQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 463 ---------NF--LWFNIGSVDSFERNLELAQA-QMHIDPANYL-------PVIYKTEIE 503
+F W N+ + +S E LE+ Q IDP N+ + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSI 230
Query: 504 LSSLSGIL-----PTLLIIGRRGGGLFGGVMESTAKLINSSDIGV------RFKDVA--- 549
+ L +L L++ V AK N+ ++ RFK V
Sbjct: 231 QAELRRLLKSKPYENCLLVLL-------NV--QNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 550 GCEEAKVEIMEFVNFLKNPQQYIDLGAK--------IPKGAMLTGPPGTGKTLLAKATAG 601
++ + P + L K +P+ + T P +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-------RRLSIIA 334
Query: 602 EA---------NVPFITVSG-SEFLEMFVGV-GPSRVRDMF---SMARKHAP------CI 641
E+ N + + +E + V P+ R MF S+ A +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701
++ D I S+ +N+L +L
Sbjct: 395 IWFDVIK--------------SDVMVVVNKLH------------------------KYSL 416
Query: 702 LRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKL 745
+ ++Q P + SI ++L+ + L R +
Sbjct: 417 V-----EKQ-----PK-ESTISIPSIYLELKVKLENEYALHRSI 449
Score = 49.9 bits (118), Expect = 5e-06
Identities = 51/419 (12%), Positives = 107/419 (25%), Gaps = 120/419 (28%)
Query: 695 DVLD--KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKT------DLDRDDLSRKLA 746
DV D K++L D I + + K + ++ R +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY----- 91
Query: 747 ALTPGFTGADIANVCNEAAL-----IAARD-LHTT--IVMKHF---EQAIERVVAGMEKK 795
F + I + ++ I RD L+ + K+ Q ++ + +
Sbjct: 92 ----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE- 146
Query: 796 TNVLQPEEKKTVAYHEAGHAVAG---WFLRYADPLLKVSIIPRGKG------LGYAQ--- 843
L+P + + V G ++ D L + + L
Sbjct: 147 ---LRPAKNVLI------DGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 844 -YLPREQYLYSK-----EQLLDRMCMTLGGRVSEEIFFGRITTGAE--------DD---- 885
L Q L + D S + R+ +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 886 --LKK--------VTQSAYAQVAHFGMNEKVGNVSFDMPQPGEMVLEKPYSEST-AQLID 934
+T + + QV F ++S D L +S + +D
Sbjct: 257 KAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLD 312
Query: 935 NEVRSLISNAYTRT-------KALLIEHKA--------SVEKVAERLLKK--EILDRNDM 977
+ L T + + A + +K+ +++ +L+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEY 371
Query: 978 IELLGTRPFPEKSTYEEFVEGTGSFEEDTSLPEGLKD--W-NKDKEVPKKTEEKEEKKA 1033
+ ++ F +P L W + K K K +
Sbjct: 372 -----------RKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Score = 49.1 bits (116), Expect = 7e-06
Identities = 52/387 (13%), Positives = 119/387 (30%), Gaps = 102/387 (26%)
Query: 3 EMNYKEITWKDFINNVLTKGIVEKLEVVNKKWVRVKLL------PGNS-----MDGA--- 48
+ K++ +D ++L+K ++ + + L ++
Sbjct: 32 NFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 49 --NFLWFNIGSVD---SFERNLELAQ-AQMHIDPANYLP---VIYKTEIEL-SSLSGILP 98
FL I + S + + Q +++ D + + ++L +L + P
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 99 TLLII--GRSAEMMGGRPGRRGGGLFG-GVMESTAKLINSSDIGVRFKD------VAGCE 149
++ G + G G + + S + + + C
Sbjct: 150 AKNVLIDG-----VLG---------SGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 150 EAKVEIMEFVNFL-----KNPQQYIDLGAKIPKGAMLTERNKSRMAQRMLCTAKKLERFL 204
+ ++E + L N D + I + ++ + R L +K E L
Sbjct: 194 SPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAEL--RRLLKSKPYENCL 247
Query: 205 --LHNINHGR-YSSFHINNS--LATLPKSNFPPTTVESVLHQWRIILSENVPKGFEKFYP 259
L N+ + + +++F+++ L T K T S I L ++
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISL-DHHSMTLTPDEV 303
Query: 260 DK------NKKSAEKPKEEGKPSDSTQPPLSKPDLS----SSRSGSSPWNMGVFGGGGGK 309
+ + + P+E + P LS S R G + W+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTN-----PRR---LSIIAESIRDGLATWD---------N 346
Query: 310 WRIILSENVPKGFEKFY----PDKNKK 332
W+ + + + E P + +K
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRK 373
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 62.4 bits (151), Expect = 3e-10
Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 55/285 (19%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE------ANVPFITV 610
+I + + L + P + G GTGKT + K + + +
Sbjct: 28 QIRKIASILAPL-----YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82
Query: 611 SGSE-------FLEMFVGVGPSRV-----------RDMFSMARKHAPCILFIDEIDAVGR 652
+ + ++ + R + ++ + ++ +DEIDA +
Sbjct: 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK 142
Query: 653 KRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLR---PGRFDR 709
K ++ L +L ++ + + + TN V +D R +
Sbjct: 143 KYN----------DDILYKLS-RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEE 191
Query: 710 QIFVP--APDIKGRASIFKVHLKPLKTDLDRDD-----LSRKLAALTPGFTGADIANVCN 762
IF P A +++ I + D + A A ++
Sbjct: 192 IIFPPYNAEELE---DILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA--LDLLR 246
Query: 763 EAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTV 807
+ IA R T + ++ A E + + + P K V
Sbjct: 247 VSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLV 291
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 60.6 bits (146), Expect = 1e-09
Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 48/282 (17%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE----ANVPFITVSG 612
++ + L N ++ A L G PGTGKT+ + F+ ++G
Sbjct: 25 QLQQLDILLGN---WLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81
Query: 613 SEFLEMF----------------VGVGPSRVRDMF--SMARKHAPCILFIDEIDAVGRKR 654
+ G+ + + + L +D+ +
Sbjct: 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--- 138
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGR--FDRQIF 712
+ +T +L E D + ++ + VL+ I
Sbjct: 139 --------PDILSTFIRLGQEADKLG-AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR 189
Query: 713 VPAPDIKGRASIFKVHLKPLKTDLDRDD-----LSRKLAALTPGFTGADIAN----VCNE 763
I K + + ++ A TP T A +
Sbjct: 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249
Query: 764 AALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKK 805
+A A ++ I + ++ + V+ G+ ++ + P +K
Sbjct: 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEK 291
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 57.1 bits (137), Expect = 1e-08
Identities = 50/288 (17%), Positives = 87/288 (30%), Gaps = 56/288 (19%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAK---------ATAGEANVPF 607
E+ L L + P A+L G GTGKT +A+ A++ V
Sbjct: 27 ELRRLAEVLAPA-----LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81
Query: 608 ITVSG----------SEFLEMFVGVGPSR--------VRDMFSMARKHAPCILFIDEIDA 649
I V+ S E P R + ++R I+ +DEID
Sbjct: 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141
Query: 650 VGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV---LDKALLRPGR 706
+ ++ GG ++ L ++ V ++ TN + L+ +
Sbjct: 142 LPKRPGG---------QDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG 192
Query: 707 FDRQIFVP--APDIKGRASIFKVHLKPLKTDLDRDD-----LSRKLAALTPGFTGADIAN 759
+F P AP ++ I + + D + A +
Sbjct: 193 EVELVFPPYTAPQLR---DILETRAEEAFNPGVLDPDVVPLCAALAAREHG--DARRALD 247
Query: 760 VCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTV 807
+ A IA R + +H A + + P K V
Sbjct: 248 LLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLV 295
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 56.1 bits (134), Expect = 4e-08
Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 42/269 (15%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKA-------TAGEANVPFIT 609
E N + + G G GKT LAK A + +
Sbjct: 30 EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89
Query: 610 VS----------------GSEFLEMFVGVGPSRVRDMFS----MARKHAPCILFIDEIDA 649
+ G + + + + ++ ++ +DE +
Sbjct: 90 AYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS 149
Query: 650 VGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGR--- 706
+ + TL ++ E+ + + L + V L + +
Sbjct: 150 MLSSPRIAAEDLY-----TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204
Query: 707 -FDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDD-----LSRKLAALTPGFTGADIA-N 759
++ +PA + +I + + D + +S G A A
Sbjct: 205 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIV 264
Query: 760 VCNEAALIAARDLHTTIVMKHFEQAIERV 788
A +A ++ +A+
Sbjct: 265 ALKMACEMAEAMGRDSLSEDLVRKAVSEN 293
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 55.2 bits (132), Expect = 7e-08
Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 55/284 (19%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAK---------ATAGEANVPF 607
+ + ++ + ++ + G GTGKT ++K E
Sbjct: 28 ILRDAAIAIRYF-----VKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV 82
Query: 608 ITV--------------------SGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEI 647
+ F G+ D ++ I+++DE+
Sbjct: 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEV 142
Query: 648 DAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLR-PGR 706
D + ++RGG + L QL + N+ V+ +N ++V D R
Sbjct: 143 DTLVKRRGG---------DIVLYQL------LRSDANISVIMISNDINVRDYMEPRVLSS 187
Query: 707 FDRQIFVPAPDIKGRASIFKVHLKP-LKTDLDRDDLSRKLAALTPGFTG--ADIANVCNE 763
+ D + I + + L D++ +AA++ G N+
Sbjct: 188 LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR 247
Query: 764 AALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTV 807
AA +A+ I +H ++AI + P K
Sbjct: 248 AAQLASGG--GIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLA 289
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 55.3 bits (133), Expect = 7e-08
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 33/168 (19%)
Query: 544 RFKDVAGCEEAKVEIMEFV-----NFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKA 598
+ V G + + +++ ++ + + + G+ + + AML GPPG GKT A
Sbjct: 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 96
Query: 599 TAGEANVPFITVSGS-------------EFLEMFVGVGPSRVRDMFSMARKHAPCILFID 645
A E + + S L+ VG + + I +D
Sbjct: 97 VAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI-IMD 155
Query: 646 EIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693
E+D G + QL T+ ++L R
Sbjct: 156 EVD-----------GMSGGDRGGVGQL---AQFCRKTSTPLILICNER 189
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 54.9 bits (133), Expect = 9e-08
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 586 GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHA----PCI 641
GPPGTGKT LA+ A AN +S V G +R+ AR++ I
Sbjct: 57 GPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAGRRTI 109
Query: 642 LFIDEI 647
LF+DE+
Sbjct: 110 LFVDEV 115
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 46.0 bits (109), Expect = 4e-05
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 29/130 (22%)
Query: 534 KLINSSDIGVRFKDV---------AGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 584
+ I + ++ + A EA I++FV + +Q KG L
Sbjct: 107 ERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQ---------KGLYL 157
Query: 585 TGPPGTGKTLLAKATAGEA------NVPFITVSGSEFL-EMFVGVGPSRVRDMFSMARKH 637
G G GK+ L A A E + + F ++ + V++ +
Sbjct: 158 YGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF--PSFAIDVKNAISNGSVKEEIDAVKN- 214
Query: 638 APCILFIDEI 647
+L +D+I
Sbjct: 215 -VPVLILDDI 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 41.6 bits (98), Expect = 4e-04
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 533 AKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIP--KGAMLTGPPGT 590
LI S + A + + + ++ ++++ KG L G G
Sbjct: 7 ESLIQSMFMPREILR-ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGV 65
Query: 591 GKTLLAKATAGEA-----NVPFITVSGSEFL-EMFVGVGPSRVRDMFSMARKHAPCILFI 644
GKT L A A E + + V E E+ + + + +K P +L +
Sbjct: 66 GKTYLLAAIANELAKRNVSSLIVYV--PELFRELKHSLQDQTMNEKLDYIKK-VP-VLML 121
Query: 645 DEI 647
D++
Sbjct: 122 DDL 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 41.9 bits (99), Expect = 8e-04
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGP---SRVRDMFSMA 634
PK ++ GP G GKT +A+ A AN PFI V ++F E+ VG S +RD+ A
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY-VGKEVDSIIRDLTDSA 107
Query: 635 RKHAPC-----ILFIDEIDAVGRKRGGR 657
I+FIDEID + +K
Sbjct: 108 GGAIDAVEQNGIVFIDEIDKICKKGEYS 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 40.5 bits (94), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621
+L+G PG+GK+ +A+A A VP + +
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH 51
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 552 EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA------NV 605
A + I FV+ + + KG G PG GKT LA AT
Sbjct: 20 NRALLTIRVFVH---------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70
Query: 606 PFITVSGSEFL-EMFVGVGPSRVRDMFSMARKHAPCILFIDEI 647
F + + + + + +L +D++
Sbjct: 71 YFFDT--KDLIFRLKHLMDEGKDTKFLKTVLN--SPVLVLDDL 109
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 40.2 bits (94), Expect = 0.005
Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 41/206 (19%)
Query: 572 IDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAN---VPFITVSGS-------EFLEMFVG 621
+G +L GPPG+GKT++ ++ V I S L
Sbjct: 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTN 1319
Query: 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF-- 679
+ +LF DEI+ + G S+ + L+E GF
Sbjct: 1320 YVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG------SQNVVLFLRQLMEKQGFWK 1373
Query: 680 ------NTTTNVVVLAATN------RVDVLDKALLRPGRFDRQ---IFVPAPDIKGRASI 724
T + ++ A N R+ + RF R +++ P K + I
Sbjct: 1374 TPENKWVTIERIHIVGACNPPTDPGRIPM-------SERFTRHAAILYLGYPSGKSLSQI 1426
Query: 725 FKVHLKP-LKTDLDRDDLSRKLAALT 749
++++ K K + + A +
Sbjct: 1427 YEIYYKAIFKLVPEFRSYTEPFARAS 1452
Score = 29.8 bits (67), Expect = 6.3
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 4/22 (18%)
Query: 581 GAMLTGPPGTGKT----LLAKA 598
+L G G GKT + A
Sbjct: 925 ALILVGKAGCGKTATWKTVIDA 946
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 39.3 bits (92), Expect = 0.006
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 529 MESTAKLINSSDIGVR---FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLT 585
+E + + +I V V G E A VE+++ A + +L
Sbjct: 21 LELGIEFTTTEEIEVPEKLIDQVIGQEHA-VEVIKT-------------AANQKRHVLLI 66
Query: 586 GPPGTGKTLLAKATA 600
G PGTGK++L +A A
Sbjct: 67 GEPGTGKSMLGQAMA 81
Score = 29.7 bits (67), Expect = 5.9
Identities = 7/63 (11%), Positives = 21/63 (33%)
Query: 754 GADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEAG 813
D+ + A IA + + + +A++ ++ + +K+ G
Sbjct: 341 LRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKPLEKQLADWYIERKKEYQVIKTEG 400
Query: 814 HAV 816
+
Sbjct: 401 SEI 403
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 39.5 bits (92), Expect = 0.008
Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 42/207 (20%)
Query: 572 IDLGAKIPKGAMLTGPPGTGKTLLAKATAGE------ANVPFITVSGSEFLEMFV----- 620
+ + +L GPPG+GKT+ +T ++ F + + E L
Sbjct: 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCE 1356
Query: 621 GVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF- 679
+ + ++F DEI+ + G +++ T + +VE GF
Sbjct: 1357 YKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYG------TQRVITFIRQMVEKGGFW 1410
Query: 680 -------NTTTNVVVLAATN------RVDVLDKALLRPGRFDRQ---IFVPAPDIKGRAS 723
+ + A N RV + RF R + V P
Sbjct: 1411 RTSDHTWIKLDKIQFVGACNPPTDAGRVQL-------THRFLRHAPILLVDFPSTSSLTQ 1463
Query: 724 IFKVHLKP-LKTDLDRDDLSRKLAALT 749
I+ + +K + + L
Sbjct: 1464 IYGTFNRALMKLLPNLRSFADNLTDAM 1490
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 38.2 bits (89), Expect = 0.013
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFL--------EMFVGVGP---SRVRDMFS 632
L GPPG K+L+A+ F E+L E+F GP ++D
Sbjct: 46 LLGPPGIAKSLIARRLKFA----FQNARAFEYLMTRFSTPEEVF---GPLSIQALKDEGR 98
Query: 633 MARKHAPC-----ILFIDEI 647
R + I+F+DEI
Sbjct: 99 YERLTSGYLPEAEIVFLDEI 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 36.8 bits (85), Expect = 0.015
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 23/91 (25%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRD------------M 630
++TG P TGKT L++A A +P + S F E+ R+ +
Sbjct: 9 IVTGHPATGKTTLSQALATGLRLPLL--SKDAFKEVMFDGLGWSDREWSRRVGATAIMML 66
Query: 631 FSMARKHA----PCILFIDEIDAVGRKRGGR 657
+ A I+ ++ R
Sbjct: 67 YHTAATILQSGQSLIM-----ESNFRVDLDT 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 36.7 bits (84), Expect = 0.015
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621
L G GK+ + + P++ +E
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 37.2 bits (87), Expect = 0.020
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS--RVRDMFSMARKHAPC 640
+L GPPG GKT LA A E SG P + DM ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSG-----------PVLVKQGDMAAILTSLERG 103
Query: 641 -ILFIDEI 647
+LFIDEI
Sbjct: 104 DVLFIDEI 111
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 37.6 bits (88), Expect = 0.021
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPF 607
+L GP G+GKTLLA+ A +VPF
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 37.2 bits (87), Expect = 0.023
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPF 607
+L GP G+GKTL+A+ A ++P
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPI 100
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 36.4 bits (85), Expect = 0.042
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS--RVRDMFSMARKHAPC 640
+ +GP G GKT LA + E + T + P + D+ ++ +
Sbjct: 59 LFSGPAGLGKTTLANIISYEMSANIKTTA-----------APMIEKSGDLAAILTNLSEG 107
Query: 641 -ILFIDEI 647
ILFIDEI
Sbjct: 108 DILFIDEI 115
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.050
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 1003 EEDTSLPEGLKDW--NKDKEVPKKTEEKEEKKAK 1034
+E PE ++ W + K + + + + +
Sbjct: 82 QE----PESIRKWREEQRKRLQELDAASKVMEQE 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 36.0 bits (82), Expect = 0.055
Identities = 17/235 (7%), Positives = 50/235 (21%), Gaps = 51/235 (21%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE----------ANVP 606
+ + + L + K +T + K L E
Sbjct: 28 DFTRIFLPIYDS-----LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFD 82
Query: 607 FITVSG----------SEFLEMFVGVGPSRVRDMFSM--------ARKHAPCILFIDEID 648
+I + + + ++ K ++ I +
Sbjct: 83 YIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142
Query: 649 AVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL---LRPG 705
+ ++ + F +N + + ++ + + +
Sbjct: 143 NLLSEKILQYFEKWISSKN---------------SKLSIICVGGHNVTIREQINIMPSLK 187
Query: 706 RFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANV 760
+I + D + LK L +K + +
Sbjct: 188 AHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKI 242
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid
receptor, icosahedral virus; 3.45A {Adeno-associated
virus - 5}
Length = 724
Score = 36.0 bits (82), Expect = 0.067
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 318 VPKGFEKFYPDKNKKSAEKPKEEGKPSDSTQPPLSKPDLSSSRSGSSPWNMGVFGGGGGK 377
+ F K + ++ ++ + + + + S + GG G
Sbjct: 144 IDDHFPKRKKARTEEDSKPSTSSDAEAGPSGSQQLQIPAQPASSLGADTMSAGGGGPLGD 203
Query: 378 GGQGSGGKGF--GDFSGGDK 395
QG+ G G GD+
Sbjct: 204 NNQGADGVGNASGDWHCDST 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 36.1 bits (84), Expect = 0.073
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 565 LKNPQQYIDLGAKIPKGAML-TGPPGTGKTLLAKATAGEANVPFITVSGSEFLE 617
L + + P G+ L GP G GKT + + + + SE++E
Sbjct: 481 LGHEHK--------PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 35.6 bits (83), Expect = 0.075
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 33/78 (42%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSG-------------SEFLEMFVGVGPSRVRD 629
+L GPPG GKT LA A E V SG + LE D
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE---------EGD 92
Query: 630 MFSMARKHAPCILFIDEI 647
ILFIDEI
Sbjct: 93 -----------ILFIDEI 99
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 35.5 bits (82), Expect = 0.089
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 581 GAMLTGPPGTGKTLLAKATAG 601
G ++ G GTGK+ +A A
Sbjct: 47 GVLVFGDRGTGKSTAVRALAA 67
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 33.7 bits (78), Expect = 0.091
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 40/151 (26%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRV-RDMFSMARKHAPCI 641
LTG G+ +A+ +G+ ++ + ++ A +
Sbjct: 31 FLTGEAGSPFETVARY---------FHKNGTPWVSPARVEYLIDMPMELLQKAEGG---V 78
Query: 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701
L++ +I R + + ++ + + V V+A+ +
Sbjct: 79 LYVGDIAQYSR-----------NIQTGITFIIGKAE----RCRVRVIASCSY-AAGSDG- 121
Query: 702 LRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732
+ + G S V + PL
Sbjct: 122 ---ISCE-------EKLAGLFSESVVRIPPL 142
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 33.8 bits (77), Expect = 0.13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVS 611
LTG PG GKT L K A ++ + +I V
Sbjct: 16 LTGTPGVGKTTLGKELASKSGLKYINVG 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 583 MLTGPPGTGKTLLAKATAGE 602
+ +GPPGTGKT A A A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 34.2 bits (79), Expect = 0.19
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 583 MLTGPPGTGKTLLAKATAGE 602
+ +GPPGTGKT A A A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 33.7 bits (77), Expect = 0.20
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 22/121 (18%)
Query: 324 KFYPDKN---KKSAEKPKEEGKPSDSTQPPLSKPDLSSS--RSGSSPWNMGVFGGGGGKG 378
K +PDKN + + + + L DL + G G+ GG+
Sbjct: 29 KLHPDKNPNNPNAHGDFLKINRAYEV----LKDEDLRKKYDKYGEK----GLEDNQGGQY 80
Query: 379 GQGSGGKGFGDFSGGDKEKYFMYGLIGSVAVLAAAVMYEMNYK---------EITWKDFI 429
S + D E + AV + + + Y TW++F
Sbjct: 81 ESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA 140
Query: 430 N 430
Sbjct: 141 K 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.7 bits (76), Expect = 0.21
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 552 EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611
+ A + + K + P +L G G GKT + + E + +
Sbjct: 12 KHALARNLRSLTRGKKSSK-------QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64
Query: 612 GSEFLEMF 619
G F
Sbjct: 65 GDSFRSQH 72
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 33.1 bits (76), Expect = 0.24
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L GP K+ +A + E P I
Sbjct: 6 LEGPDCCFKSTVAAKLSKELKYPII 30
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 33.8 bits (76), Expect = 0.24
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 560 EFVNFLKNPQQYIDLGAK---IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEF 615
+F N L + + + G K P +L G PG+GKT L A E I + F
Sbjct: 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 33.9 bits (78), Expect = 0.24
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 583 MLTGPPGTGKTLLAKATAGE 602
+ GPPG GKT A A A E
Sbjct: 50 LFAGPPGVGKTTAALALARE 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.7 bits (77), Expect = 0.31
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 574 LGAKIPKGA--MLTGPPGTGKTLLAKATAGEA---NVPFITVSGSEFLEMFV 620
G K + + TG GTGKTLL A I + E +
Sbjct: 274 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLL 325
Score = 32.2 bits (73), Expect = 0.88
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLA----KATAGEANVPFITVSGSEFLEMFV 620
+P G ++G GTGKTL + E + P + V+ E + +
Sbjct: 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 32.7 bits (74), Expect = 0.37
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 40/104 (38%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPF---------------------ITVSGSE-------- 614
+TG PG GKT L K IT G +
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 615 -----------FLEMFVGVGPSRVRDMFSMARKHAPCILFIDEI 647
++ F + + + A+K ++ IDEI
Sbjct: 65 TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEI 108
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.4 bits (73), Expect = 0.46
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 568 PQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFI 608
+ + P ++ G G+GK+ + +A A PFI
Sbjct: 7 YKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 33.0 bits (75), Expect = 0.46
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML-TGPPGTGKTLLAK--ATA 600
+ + G A+ + ++ KI A+L G PGTGKT +A A A
Sbjct: 42 ASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQA 93
Query: 601 GEANVPFITVSGSEF--LEMFVGVGPSRV--RDMFSMARKHAPCILFIDEIDAVGRKRGG 656
+ PF ++GSE LEM ++ R + + A + + EID + + G
Sbjct: 94 LGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQG 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 32.3 bits (74), Expect = 0.61
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 578 IPKGAM--LTGPPGTGKTLLA 596
IP+G LTG PGTGKT+ +
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 32.0 bits (73), Expect = 0.76
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 578 IPKGAM--LTGPPGTGKTLLA 596
IP+ + L+G PGTGKT+ +
Sbjct: 20 IPERNVVLLSGGPGTGKTIFS 40
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 31.4 bits (72), Expect = 0.92
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L G PG+GK+ + + A V +
Sbjct: 7 LVGLPGSGKSTIGRRLAKALGVGLL 31
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 32.1 bits (72), Expect = 1.1
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 559 MEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618
M + L+ + + K ++ G PG GKT + + +
Sbjct: 141 MAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMI 200
Query: 619 --------FVGVGPSRVRDMFSMARKHAP------CILFIDEI 647
+ VR + S + LFIDE
Sbjct: 201 RRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEG 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 31.7 bits (73), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVS 611
L GPPG GKT LAK+ A F+ +S
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.9 bits (69), Expect = 1.3
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643
+TG PGTGKT +A+ A E + F + + ++ ++ + +
Sbjct: 15 ITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVKEN-HFYTEYDTELDTHIIEEKDEDRL 72
Query: 644 IDEIDAVGRKRGGRNFGGHS 663
+D ++ + RG HS
Sbjct: 73 LDFMEPIMVSRGNHVVDYHS 92
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 30.6 bits (70), Expect = 1.4
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
+ G G G T + + A F+
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFV 31
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.4 bits (71), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 578 IPKGA--MLTGPPGTGKTLLA 596
P+G +LTG GTGKT A
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 29.5 bits (67), Expect = 1.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 324 KFYPDKN---KKSAEKPKEEGKPSDSTQPPLSKPDLSSS--RSGSSPWNMGVFGGGGGKG 378
K++PD+N K++ K KE + + L+ ++ + G + + G GGGG G
Sbjct: 30 KYHPDRNQGDKEAEAKFKEIKEAYEV----LTDSQKRAAYDQYGHAAFEQGGMGGGGF-G 84
Query: 379 GQGSGGKGFGDFSG 392
G FGD G
Sbjct: 85 GGADFSDIFGDVFG 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.7 bits (69), Expect = 1.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621
+TGP G GK+ K A + + + G M VG
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVG 43
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 30.8 bits (69), Expect = 1.7
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 584 LTGPPGTGKTLLA----------KATAGEANVPFIT-VSGSEFLEMFVGVGPSRVRDMFS 632
+TG PG+GKTL K T + G + ++ ++
Sbjct: 10 ITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTD 69
Query: 633 MARKHAP------------CILFIDE 646
I+ +DE
Sbjct: 70 EQLSAHDMYEWIKKPENIGSIVIVDE 95
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 1.8
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGP 624
+ G PG+GK+ A+ N F ++ ++ + +
Sbjct: 6 LTIGCPGSGKSTWAREFI-AKNPGFYNINRDDYRQSIMAHEE 46
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 1.9
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L G G GKT + A
Sbjct: 10 LIGLMGAGKTSVGSQLAKLTKRILY 34
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 583 MLTGPPGTGKTLLAKA---TAGEANVPFITV 610
L G PGTG+ A+ A F+
Sbjct: 28 WLYGAPGTGRMTGARYLHQFGRNAQGEFVYR 58
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.5 bits (68), Expect = 2.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSG 612
LTGPPG GKT L + + V G
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 30.6 bits (69), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 556 VEIMEFVNFLKNPQQYIDLGAKIPK--GAMLTGPPGTGKTLLAKA 598
+E++ F+N LK + IPK GPP TGK++L +
Sbjct: 107 IELITFINALKLWLK------GIPKKNCLAFIGPPNTGKSMLCNS 145
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 30.8 bits (70), Expect = 2.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 583 MLTGPPGTGKTLLAKATA 600
++ PG G L A +
Sbjct: 28 LIQALPGMGDDALIYALS 45
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 30.2 bits (69), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L GP G GK+ + + A + N+ F
Sbjct: 9 LVGPMGAGKSTIGRQLAQQLNMEFY 33
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 30.7 bits (70), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 572 IDLGAKIPKG--AMLTGPPGTGKTLLAK--ATAGEANVP 606
+DL + I +G ++ PP GKT+L + A + N P
Sbjct: 165 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 30.5 bits (69), Expect = 2.7
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVP-----FITVSGSEFLEMFVGVGPSRVRD---MFSMA 634
+++G PG GKT A E + ++ S+ + + V VR+ F+
Sbjct: 46 IISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD--DRGIDV----VRNQIKHFAQK 99
Query: 635 RKHAPC----ILFIDEIDA 649
+ H P I+ +DE D+
Sbjct: 100 KLHLPPGKHKIVILDEADS 118
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 30.7 bits (70), Expect = 2.8
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 572 IDLGAKIPKG--AMLTGPPGTGKTLLAK--ATAGEANVP 606
IDL A I KG M+ PP GKT + K A N P
Sbjct: 166 IDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHP 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 29.5 bits (67), Expect = 2.9
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 11/52 (21%)
Query: 560 EFVNFLKNPQQYIDLGAKI---------PKGAM--LTGPPGTGKTLLAKATA 600
++ + + G K K M L G G GKT L +
Sbjct: 3 SLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 29.5 bits (67), Expect = 3.1
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 35/95 (36%)
Query: 586 GPPGTGKTLLAKATAGEA-----NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPC 640
G G GK+ L +A +A N +I + +
Sbjct: 43 GEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAE----------------- 85
Query: 641 ILFIDEIDAVGRKRGGRNFGGHSEQE---NTLNQL 672
L +D+++ +G + EQ + N+
Sbjct: 86 YLAVDQVEKLGNE----------EQALLFSIFNRF 110
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.4 bits (68), Expect = 3.2
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCIL 642
+ G PG+GK+ A+ + N F ++ ++ + + +
Sbjct: 6 LTIGCPGSGKSTWAREFIAK-NPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 643 FIDEIDAVGRKRGGRNF 659
F + +
Sbjct: 65 FDTAKSILYGGDSVKGV 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 3.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 584 LTGPPGTGKTLLAKA 598
+ GP GTG T L K
Sbjct: 50 INGPAGTGATTLTKF 64
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 30.3 bits (68), Expect = 3.3
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 556 VEIMEFVNFLKNPQQYIDLGAKIPK--GAMLTGPPGTGKTLLAKATAGEA-NVPFITVSG 612
+ + K K L GP TGKT +A+A A + +
Sbjct: 84 YDPQYAASVFLGW-----ATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN 138
Query: 613 SEF 615
F
Sbjct: 139 ENF 141
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 29.9 bits (68), Expect = 3.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 586 GPPGTGKTLLAKATAGEA 603
GP G+GKT LA A A +A
Sbjct: 29 GPAGSGKTYLAMAKAVQA 46
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 30.3 bits (69), Expect = 3.4
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 366 WNMGVFGGGGGKGGQGSGGKGFGDF 390
N FG Q + F D
Sbjct: 96 RNDPGFGRQRQTHEQSYSQQDFDDI 120
Score = 29.1 bits (66), Expect = 8.1
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 366 WNMGVFGGGGGKGGQGSGGKGFGDFS 391
W G G + DF
Sbjct: 93 WQHRNDPGFGRQRQTHEQSYSQQDFD 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 29.9 bits (68), Expect = 3.5
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
LTG G GKT L KA A + NVPFI
Sbjct: 30 LTGYMGAGKTTLGKAFARKLNVPFI 54
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 30.2 bits (68), Expect = 3.5
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 556 VEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATA 600
+ + F K ++ + G G GKT ++ ATA
Sbjct: 1 MAFKDLFKFNKGKTTFV----------FIGGKGGVGKTTISAATA 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 23/43 (53%)
Query: 921 LE---KPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVE 960
L+ K Y++ +A AL I KA++E
Sbjct: 25 LQASLKLYADDSA------------------PALAI--KATME 47
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 29.7 bits (66), Expect = 3.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFI 608
+ ++ G G+GKT +A A E + F
Sbjct: 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 30.4 bits (69), Expect = 4.2
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 18/73 (24%)
Query: 609 TVSGSEFL------EMFVGVGPSRVRDM------FS------MARKHAPCILFIDEIDAV 650
TV GS++ MFV P +R++ ++ I E D
Sbjct: 73 TVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFR 132
Query: 651 GRKRGGRNFGGHS 663
R+FGG
Sbjct: 133 HGLIHSRDFGGTK 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 29.1 bits (66), Expect = 4.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L G G+GK+ LA+ + +
Sbjct: 12 LIGFMGSGKSSLAQELGLALKLEVL 36
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB:
1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A
1c8e_A 1c8f_A 1c8g_A
Length = 584
Score = 30.2 bits (67), Expect = 4.7
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 339 EEGKPSDSTQPPLSKPDLSSSRSGSSPWNMGVFGGGGGKGGQGSGGKGFGDFSGG 393
+G P + + ++ S GGGG GG G G G F+
Sbjct: 2 SDGAVQPDGGQPAVRNERATGSGNGS--------GGGGGGGSGGVGISTGTFNNQ 48
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 30.0 bits (68), Expect = 4.7
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 15/63 (23%)
Query: 578 IPKGAMLTGPPGTGKT----LLAKATAGEANVPFITVSGSEFLEMFVG-VGPSRVRDMFS 632
PK ++ GP G GKT LAK AN PFI V ++F E VG VG +++ S
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKL----ANAPFIKVEATKFTE--VGYVG----KEVDS 98
Query: 633 MAR 635
+ R
Sbjct: 99 IIR 101
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 29.1 bits (66), Expect = 4.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
G G+GK+ LA+A A + ++ F+
Sbjct: 9 FIGFMGSGKSTLARALAKDLDLVFL 33
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 29.8 bits (67), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 589 GTGKTL-LAKATAGEANVPFITV 610
G GKT+ AK A N+P I
Sbjct: 153 GGGKTMDSAKYIAHSMNLPSIIC 175
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 29.8 bits (67), Expect = 5.1
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 582 AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMF 631
+ L A +A V + + + V P R F
Sbjct: 85 SALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTF 134
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 29.9 bits (68), Expect = 5.2
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 583 MLTGPPGTGKT----LLAKA 598
+ +G G GKT LLAK
Sbjct: 42 LFSGTRGVGKTSIARLLAKG 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.2 bits (68), Expect = 5.3
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 30/95 (31%)
Query: 583 MLTGPPGTGKTLLAKATA-------------------GEANVPFITVSGSEFLEMFVGVG 623
+ G G GK++LA G+ + + +
Sbjct: 151 TIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEE 210
Query: 624 PSRVRDMFS-----------MARKHAPCILFIDEI 647
R + M RKH +L +D++
Sbjct: 211 SFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 29.0 bits (66), Expect = 5.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
L G +GK+ + + N+PF
Sbjct: 5 LIGFMCSGKSTVGSLLSRSLNIPFY 29
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 29.2 bits (65), Expect = 7.0
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 559 MEFVNFLKNPQQYID---------LGAKIPK--GAMLTGPPGTGKTLLAKA 598
M V +L +D + IPK + GP +GKT LA A
Sbjct: 138 MAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAA 188
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 29.3 bits (66), Expect = 7.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 584 LTGPPGTGKTLLAKA 598
LTG PGTGK+ KA
Sbjct: 209 LTGGPGTGKSTTTKA 223
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.34A {Sinorhizobium meliloti}
Length = 387
Score = 29.4 bits (66), Expect = 7.3
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 589 GTGKTL-LAKATAGEANVPFITV 610
G GKT AK A + +
Sbjct: 114 GGGKTADTAKIVAIDTGARIVIA 136
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 29.1 bits (65), Expect = 7.7
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 515 LIIGRR-GGGLFGGVMESTAKLINSSDIGVRF-----KDVAGCEEAKVEIME 560
L +G+ G G FG V+E+ A I+ + K+ A E + + E
Sbjct: 24 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE 75
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 29.0 bits (65), Expect = 8.0
Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 514 LLIIGRRGGGLFGGVMESTAKLINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYID 573
L G LFG E+ K I SS+I + + EI + +
Sbjct: 38 SLYFGEGIYELFG---ETIEKSIKSSNIEIEAVETVK-NIDFDEIGTNAFKIPAEVDAL- 92
Query: 574 LGAKIPKGAMLTGPPGTGKTL-LAKATAGEANVPFITV 610
+G G GK + K A +PFI+V
Sbjct: 93 IGI------------GGGKAIDAVKYMAFLRKLPFISV 118
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 29.0 bits (65), Expect = 8.4
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGS 613
+ TG L K E +P I S
Sbjct: 74 FKIPVFLSYATGANLQLKPLIQELRIPTIPASMH 107
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 28.7 bits (65), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 583 MLTGPPGTGKT----LLAKA 598
+ +G G GKT LLAK
Sbjct: 49 LFSGTRGVGKTSIARLLAKG 68
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 28.7 bits (64), Expect = 9.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 583 MLTGPPGTGKTLLAKA 598
+LTG PG GK+ +K
Sbjct: 8 ILTGLPGVGKSTFSKN 23
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 9.7
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 578 IPKG-AMLTGPPGTGKTLLA 596
+ L P G GK++LA
Sbjct: 28 VAGTVGALVSPGGAGKSMLA 47
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus
stearothermophilus} SCOP: c.55.4.1
Length = 120
Score = 27.6 bits (62), Expect = 9.8
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 930 AQLIDNEVRSLISNAYTRTKALLIEHKASVEK-------VAERLLKKEI----LDRN 975
AQ+ID+ + I +A T K ++ ++E VA+R L+K I DR
Sbjct: 42 AQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRG 98
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.1 bits (66), Expect = 9.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 565 LKNPQQYIDLGAKIPKGAML-TGPPGTGKTLLAKATA 600
LK+P++ P G+ + GP G GKT LA+A A
Sbjct: 514 LKDPKR--------PIGSFIFLGPTGVGKTELARALA 542
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,098,525
Number of extensions: 1033985
Number of successful extensions: 2853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2721
Number of HSP's successfully gapped: 186
Length of query: 1036
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 933
Effective length of database: 3,825,930
Effective search space: 3569592690
Effective search space used: 3569592690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.1 bits)