RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5440
(1036 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 351 bits (903), Expect = e-114
Identities = 150/258 (58%), Positives = 188/258 (72%), Gaps = 2/258 (0%)
Query: 535 LINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTL 594
++ I F DVAGC+EAK E+ E V +L+ P ++ LG KIPKG ++ GPPGTGKTL
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 595 LAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
LAKA AGEA VPF T+SGS+F+EMFVGVG SRVRDMF A+K APCI+FIDEIDAVGR+R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 655 GGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVP 714
G GGH E+E TLNQ+LVEMDGF ++V+AATNR DVLD ALLRPGRFDRQ+ V
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180
Query: 715 APDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHT 774
PD++GR I KVH++ + D D +A TPGF+GAD+AN+ NEAAL AAR
Sbjct: 181 LPDVRGREQILKVHMRRVPLAPDIDA--AIIARGTPGFSGADLANLVNEAALFAARGNKR 238
Query: 775 TIVMKHFEQAIERVVAGM 792
+ M FE+A ++++ G+
Sbjct: 239 VVSMVEFEKAKDKIMMGL 256
Score = 66.0 bits (161), Expect = 3e-12
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 132 LINSSDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
++ I F DVAGC+EAK E+ E V +L+ P ++ LG KIPKG ++
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLM 50
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 333 bits (856), Expect = e-108
Identities = 152/243 (62%), Positives = 182/243 (74%), Gaps = 2/243 (0%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE 602
V FKDVAG EEAK E+ E V FLKNP ++ ++GA+IPKG +L GPPG GKT LA+A AGE
Sbjct: 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 65
Query: 603 ANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGH 662
A VPFIT SGS+F+EMFVGVG +RVRD+F A++HAPCI+FIDEIDAVGRKRG GG+
Sbjct: 66 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 125
Query: 663 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRA 722
E+E TLNQLLVEMDGF T +VV+AATNR D+LD ALLRPGRFDRQI + APD+KGR
Sbjct: 126 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 185
Query: 723 SIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFE 782
I ++H + D D LA TPGF GAD+ N+ NEAAL+AAR+ I MK E
Sbjct: 186 QILRIHARGKPLAEDVDL--ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 243
Query: 783 QAI 785
+A
Sbjct: 244 EAA 246
Score = 59.1 bits (143), Expect = 4e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAML 181
V FKDVAG EEAK E+ E V FLKNP ++ ++GA+IPKG +L
Sbjct: 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLL 47
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 255 bits (652), Expect = 1e-78
Identities = 101/264 (38%), Positives = 158/264 (59%), Gaps = 5/264 (1%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V ++D+ G E+ K E+ E V + +++P +++ G KG + GPPG GKTLLAKA A
Sbjct: 4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E FI++ G E L M+ G + VR++F AR+ APC+LF DE+D++ + RGG G
Sbjct: 64 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 123
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+ +NQ+L EMDG +T NV ++ ATNR D++D A+LRPGR D+ I++P PD K R
Sbjct: 124 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 183
Query: 722 ASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHF 781
+I K +L+ K+ + +D LA +T GF+GAD+ +C A +A R+ + + +
Sbjct: 184 VAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER 241
Query: 782 EQAIERVVAGMEKKTNVLQPEEKK 805
E+ +E+ V PE ++
Sbjct: 242 ERQTNPSAMEVEEDDPV--PEIRR 263
Score = 54.4 bits (130), Expect = 2e-08
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTERNKSRMAQRMLCTAK 198
V ++D+ G E+ K E+ E V + +++P +++ G KG + A
Sbjct: 4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 199 KLERFLL 205
+ + +
Sbjct: 64 ECQANFI 70
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 236 bits (602), Expect = 1e-70
Identities = 53/343 (15%), Positives = 102/343 (29%), Gaps = 42/343 (12%)
Query: 468 NIGSVDSFERNLELAQAQMHIDPANYLPVIYKTEIELSSLSGILPTLLI-IGRRGGGLFG 526
++ SF + A H D T L S+ P L I + +F
Sbjct: 3 HLYDAKSFAKLRAAQYAAFHTDAPGSWFD--HTSGVLESVEDGTPVLAIGVESGDAIVFD 60
Query: 527 GVMESTAKLINSSDIGVRFKDVAGCEEAKVEI--------MEFVNFL--KNPQQYIDLGA 576
+ + V+ + + ++ L +P G
Sbjct: 61 KNAQRIVAYK-EKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGH 119
Query: 577 KIPKGA-MLTGPPGTGKTLLAKATAGEAN--VPFITVSGSEFLEMFVGVGPSRVRDMFSM 633
+ G ++TG +GKT L A + TV E L + V D+
Sbjct: 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA 179
Query: 634 ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR 693
+ ++ ID + V GG G + LL ++ + VV+A+ N
Sbjct: 180 MLQ--HRVIVIDSLKNVIGAAGGNTTSGGISR--GAFDLLSDIGAMAASRGCVVIASLNP 235
Query: 694 V---DVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTP 750
D + + + R + V + D+ G + + L+
Sbjct: 236 TSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQR---------------- 279
Query: 751 GFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIERVVAGME 793
+ E +++ + + +AI+ V+ E
Sbjct: 280 --LTHTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKNDE 320
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 197 bits (500), Expect = 1e-57
Identities = 98/263 (37%), Positives = 138/263 (52%), Gaps = 23/263 (8%)
Query: 543 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
V + DV GC + +I E V L++P + +G K P+G +L GPPGTGKTL+A+A A
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 602 EANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGG 661
E F ++G E + G S +R F A K+AP I+FIDE+DA+ KR
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE---KTH 117
Query: 662 HSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+ ++QLL MDG +V+V+AATNR + +D AL R GRFDR++ + PD GR
Sbjct: 118 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177
Query: 722 ASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIV---- 777
I ++H K +K D D ++A T G GAD+A +C+EAAL A R I
Sbjct: 178 LEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 235
Query: 778 -------------MKHFEQAIER 787
M F A+ +
Sbjct: 236 TIDAEVMNSLAVTMDDFRWALSQ 258
Score = 55.4 bits (132), Expect = 7e-09
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 140 VRFKDVAGCEEAKVEIMEFVNF-LKNPQQYIDLGAKIPKGAML 181
V + DV GC + +I E V L++P + +G K P+G +L
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 43
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 189 bits (482), Expect = 6e-56
Identities = 69/192 (35%), Positives = 121/192 (63%), Gaps = 7/192 (3%)
Query: 798 VLQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPR-GKGLGYAQYLPRE-QYLYSKE 855
++ P EK+ +AYHEAGHAV + +P+ ++SIIPR K LGY +LP E +YL S+
Sbjct: 1 LISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRN 60
Query: 856 QLLDRMCMTLGGRVSEEIFFGRITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQ 915
+LLD++ LGGR +EE+ FG +T+GA +D+++ T+ A V GM+E++G +++ +
Sbjct: 61 ELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEE 120
Query: 916 -----PGEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKE 970
E+ + YSE A ID EV+ +++N Y R K ++ +++ ++ + E LL+KE
Sbjct: 121 QEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKE 180
Query: 971 ILDRNDMIELLG 982
++ +++ +L
Sbjct: 181 TIEGDELRRILS 192
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 188 bits (478), Expect = 3e-53
Identities = 32/250 (12%), Positives = 63/250 (25%), Gaps = 35/250 (14%)
Query: 550 GCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFIT 609
+ + ++ + N + + + GP +GKT LA A +
Sbjct: 135 KMDSVVYDFLK--CMVYNIPK--------KRYWLFKGPIDSGKTTLAAALLELCGGKALN 184
Query: 610 VSGSEFLEMF-VGVGPSRVRDMF------SMARKHAPCILFIDEIDAVGRKRGGRNFGGH 662
V+ F +GV + +F + P I+ +D + G
Sbjct: 185 VNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNL 244
Query: 663 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR- 721
++ + + N RF +QI D
Sbjct: 245 EKKHLNKRTQIFPP----------GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHC 291
Query: 722 ASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHF 781
+ L+ L L A+ A + L + +
Sbjct: 292 LERSEFLLEKRIIQSGIALL----LMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVY 347
Query: 782 EQAIERVVAG 791
++ V G
Sbjct: 348 QKMKFNVAMG 357
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 183 bits (465), Expect = 1e-52
Identities = 39/285 (13%), Positives = 76/285 (26%), Gaps = 27/285 (9%)
Query: 539 SDIGVRFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKA 598
++I V F D + E + K + P +L G PG+GKT L A
Sbjct: 1 ANI-VNFTDKQFENRLNDNLEELIQGKKAV--------ESPTAFLLGGQPGSGKTSLRSA 51
Query: 599 TAGEANVPFITVSGSEFLEM---FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRG 655
E I + F + F + +D+ ++ + +
Sbjct: 52 IFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYN 111
Query: 656 ---GRNFGGHSEQENTLNQL-----LVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRF 707
T L +M L R + + R
Sbjct: 112 LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARA 171
Query: 708 DRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALI 767
+ ++ +H L D+ ++ + ++ + L
Sbjct: 172 TPKQAHDIVVKNLPTNLETLHKTGLF-----SDIRLYNREGVKLYSSLETPSISPKETLE 226
Query: 768 AARDLHTTIVMKHFEQAIERVVAGMEKKTNVLQPEEKKTVAYHEA 812
+ + K + +ER+ M + PE K E+
Sbjct: 227 KELNRK--VSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLES 269
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 165 bits (419), Expect = 3e-47
Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Query: 799 LQPEEKKTVAYHEAGHAVAGWFLRYADPLLKVSIIPRGKGLGYAQYLP-REQYLYSKEQL 857
+ P+EK+ +A HEAGHA+ G D + K+SIIPRG LG Q LP ++++Y K+ L
Sbjct: 2 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 61
Query: 858 LDRMCMTLGGRVSEEIFFGR--ITTGAEDDLKKVTQSAYAQVAHFGMNEKVGNVSFDMPQ 915
+++ + LGGR +EE+FFG+ ITTGAE+DL++ T AY V+ +GM++KVG ++
Sbjct: 62 YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVA 121
Query: 916 ---PGEMVLEKPYSESTAQLIDNEVRSLISNAYTRTKALLIEHKASVEKVAERLLKKEIL 972
G M S + ID EV+ +I+ Y + KA++ E+K ++ V ++LL+KE +
Sbjct: 122 NPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETI 181
Query: 973 DRNDMIELLGTRPFPEK 989
+ +E+ K
Sbjct: 182 TCEEFVEVFKLYGIELK 198
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 125 bits (314), Expect = 1e-32
Identities = 35/269 (13%), Positives = 76/269 (28%), Gaps = 27/269 (10%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGE- 602
K + E+ ++ + L N + A L G PGTGKT+ +
Sbjct: 14 VPKRLPHREQ---QLQQLDILLGNW---LRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 603 ---ANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNF 659
F+ ++G + +G R+ F+ + R+R F
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 660 GGHSE------QENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQI-- 711
+ + L + + ++ + VL+ +
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 712 FVPAPDIKGRASIFKVHLKPLKTDLDRDDLS-RKLAALTPGFTGADIA--------NVCN 762
I K + + + +A +T T D ++
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 247
Query: 763 EAALIAARDLHTTIVMKHFEQAIERVVAG 791
+A A ++ I + ++ + V+ G
Sbjct: 248 RSAYAAQQNGRKHIAPEDVRKSSKEVLFG 276
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 119 bits (299), Expect = 6e-31
Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 20/247 (8%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603
+ G E K ++ ++ K + + + +L GPPG GKT LA A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 604 NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHS 663
V SG G + + + ILFIDEI + R+ +
Sbjct: 60 GVNLRVTSGPAI--EKPGDLAAILANSL-----EEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 664 EQ--ENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGR 721
+ + + Q ++ AT R ++ LL + P+ +
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQ 172
Query: 722 ASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHF 781
+ L ++ + + + T + A I +
Sbjct: 173 GVMRDARLLGVRITEEAALEIGRRSRGTMR----VAKRLFRRVRDFAQVAGEEVITRERA 228
Query: 782 EQAIERV 788
+A+ +
Sbjct: 229 LEALAAL 235
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 119 bits (298), Expect = 1e-30
Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 21/237 (8%)
Query: 552 EEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611
+ V KN + +L GPP +GKT LA A E+N PFI +
Sbjct: 19 TRVLDDGELLVQQTKNSDR------TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 72
Query: 612 GSEFLEMFVGVGPS-RVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLN 670
+ + F ++ +F A K + +D+I+ + + L
Sbjct: 73 SPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNL----VLQ 128
Query: 671 QLLVEMDGFNTTTN-VVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHL 729
LLV + ++++ T+R DVL + + F I V P+I + +
Sbjct: 129 ALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQLLEALE 185
Query: 730 KPLKTDLDRDDLSRKLAALTPG---FTGADIANVCNEAALIAARDLHTTIVMKHFEQ 783
+ + +A G + G + E +L + + +
Sbjct: 186 LLGN--FKDKERTT-IAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 239
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 101 bits (251), Expect = 7e-24
Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 36/268 (13%)
Query: 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKI-----PKGAMLTGPPGTGKTLLAKATA 600
+ + G +AK + + +N + + L + PK ++ GP G GKT +A+ A
Sbjct: 14 QHIIGQADAKRAVAIAL---RNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70
Query: 601 GEANVPFITVSGSEFLEM--FVGVGPSRVRDMFSMARK-----HAPCILFIDEIDAVGRK 653
AN PFI V ++F E+ S +RD+ A I+FIDEID + +K
Sbjct: 71 KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 130
Query: 654 RGGRNFGGHSEQENTLNQLLVEMDGFNT--------TTNVVVLA--ATNRVDVLDKALLR 703
G +E LL ++G T +++ +A A D
Sbjct: 131 GE--YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPEL 188
Query: 704 PGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNE 763
GR ++ + A I L K T G A + +
Sbjct: 189 QGRLPIRVELTALSAADFERILTEPHASLTEQY-------KALMATEGVNIAFTTDAVKK 241
Query: 764 AALIAARDLHTT--IVMKHFEQAIERVV 789
A A R T I + +ER++
Sbjct: 242 IAEAAFRVNEKTENIGARRLHTVMERLM 269
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 81.3 bits (199), Expect = 3e-17
Identities = 26/264 (9%), Positives = 65/264 (24%), Gaps = 36/264 (13%)
Query: 557 EIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 616
E N + + G G GKT LAK T + +
Sbjct: 24 EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 83
Query: 617 EMFVGVGPSRVRDMFS---------------------------MARKHAPCILFIDEIDA 649
+ + S + ++ ++ +DE +
Sbjct: 84 AYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS 143
Query: 650 VGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDR 709
+ +++ + DG N ++V + + + + + +
Sbjct: 144 MLSSPRIA--AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG 201
Query: 710 QIFV-PAPDIKGRASIFKVHLKPLKTDLDRDDLS-RKLAALTPGFTGA-----DIANVCN 762
PA + +I + + D + ++ + G
Sbjct: 202 FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 261
Query: 763 EAALIAARDLHTTIVMKHFEQAIE 786
A +A ++ +A+
Sbjct: 262 MACEMAEAMGRDSLSEDLVRKAVS 285
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 76.2 bits (186), Expect = 7e-16
Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 27/250 (10%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603
+ G E K ++ + K + ++ +L GPPG GKT LA A E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASEL 59
Query: 604 NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHS 663
SG V V + + + + +LFIDEI + + +S
Sbjct: 60 QTNIHVTSG------PVLVKQGDMAAILTSLERG--DVLFIDEIHRLNKAVEE---LLYS 108
Query: 664 EQENTLNQLLVEMDGFNTT-----TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDI 718
E+ +++ + ++ AT R +L L RF + + +
Sbjct: 109 AIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTV 166
Query: 719 KGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVM 778
K I K + +++ ++ A T + + I
Sbjct: 167 KELKEIIKRAASLMDVEIEDAAA--EMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINT 224
Query: 779 KHFEQAIERV 788
+ +E +
Sbjct: 225 DIVLKTMEVL 234
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 62.9 bits (151), Expect = 3e-11
Identities = 42/256 (16%), Positives = 78/256 (30%), Gaps = 21/256 (8%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDL-----GAKIPKGAMLTGPPGTGKTLLAKA 598
+ V G + + +++ ++ +N ++ G+ + + AML GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 599 TAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRN 658
A E + + S+ + + V++ + + G+
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLN--AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 129
Query: 659 FGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDI 718
+ T+ ++L R + R I PD
Sbjct: 130 DEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR---PFDRVCLDIQFRRPDA 186
Query: 719 KGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIANVCNEAALIAARDLHTTIVM 778
S K LD + + +L T G DI V N + I+
Sbjct: 187 NSIKSRLMTIAIREKFKLDPNVI-DRLIQTTRG----DIRQVINLLSTISTTTKTIN--- 238
Query: 779 KHFEQAIERVVAGMEK 794
+ I + EK
Sbjct: 239 ---HENINEISKAWEK 251
Score = 29.0 bits (63), Expect = 2.7
Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 141 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDL-----GAKIPKGAMLT 182
+ V G + + +++ ++ +N ++ G+ + + AML
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLY 58
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 55.1 bits (132), Expect = 3e-08
Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 578 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKH 637
PK ++ GP G GKT +A+ A AN PFI V ++F E VG V +
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDS 105
Query: 638 APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697
A ++ EI + +E L+ LL ++ R
Sbjct: 106 AMKLVRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFR 159
Query: 698 DKALLRPGRFD 708
K LR G+ D
Sbjct: 160 KK--LREGQLD 168
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 44.6 bits (104), Expect = 1e-05
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 573 DLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPS 625
DLG I +L+G PG+GK+ +A+A A VP + +
Sbjct: 1 DLGGNI---LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRID 50
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 44.0 bits (103), Expect = 4e-05
Identities = 37/223 (16%), Positives = 63/223 (28%), Gaps = 49/223 (21%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603
F DV G E + + LG +I + +G G GKT +A+ A
Sbjct: 10 TFADVVGQEHVLTAL----------ANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGL 58
Query: 604 NVPFIT-------------VSGSEFLEMFVGVGPSR-----VRDMFSMARKHAPC----I 641
N + F+++ SR RD+ + +
Sbjct: 59 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 118
Query: 642 LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKAL 701
IDE+ + R ++ N LL ++ +V L AT L +
Sbjct: 119 YLIDEVHMLSR--------------HSFNALLKTLE--EPPEHVKFLLATTDPQKLPVTI 162
Query: 702 LRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRK 744
L + I+ + L+R
Sbjct: 163 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 205
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 44.4 bits (104), Expect = 4e-05
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-----FVGVGPSR-VRDMFS 632
+L GP G+GKTL+A+ A ++P + E V +R ++
Sbjct: 68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 127
Query: 633 MARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTT 683
+K I+FIDEID + R R+ E LL ++G
Sbjct: 128 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNI 178
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 42.3 bits (98), Expect = 1e-04
Identities = 28/154 (18%), Positives = 48/154 (31%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHA 638
P + G PG+GK + ++ E G + +
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLD 698
P I+ + + G+NF N N E + + VL +V+
Sbjct: 66 PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125
Query: 699 KALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732
+ LL+ G + IK R + F V K +
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLV 159
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 41.4 bits (97), Expect = 2e-04
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 39/182 (21%)
Query: 570 QYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSR--- 626
+ I + ++TG G GK ++A+ ++ + + +
Sbjct: 14 EKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 73
Query: 627 -VRDMFSMARKHAPCI--------LFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL---- 673
+ F+ A LF+DEI + E + L +++
Sbjct: 74 YEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVIESGK 122
Query: 674 VEMDGFNTT--TNVVVLAATNRVDVLDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKP 731
G NV +LAATNR ++ K L++ G+F ++ R + ++ + P
Sbjct: 123 FYRLGGRKEIEVNVRILAATNR-NI--KELVKEGKFREDLYY-------RLGVIEIEIPP 172
Query: 732 LK 733
L+
Sbjct: 173 LR 174
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 39.0 bits (89), Expect = 0.002
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM----FVGVGPSRVRDMFSMARKHA 638
++ G TGK+ + K E N+P+I + +F E + +++ + ++
Sbjct: 33 LVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLP 92
Query: 639 PCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEM 676
+ + I + F + + + LL
Sbjct: 93 SLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESF 130
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 38.6 bits (88), Expect = 0.002
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 16/111 (14%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603
++ EE + + ++ + L GP GTGK A
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHLL-----------LYGPNGTGKKTRCMALLESI 57
Query: 604 NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
P + + + ++ S +P L I D R
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKLELNVVS-----SPYHLEITPSDMGNNDR 103
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 38.8 bits (89), Expect = 0.003
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 545 FKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAG 601
F + G E+ K+ ++ +D G G ++ G GTGK+ +A A
Sbjct: 6 FSAIVGQEDMKLALLLTA---------VDPG---IGGVLVFGDRGTGKSTAVRALAA 50
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.3 bits (85), Expect = 0.004
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 621
L G GK+ + + P++ +E
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 36.5 bits (83), Expect = 0.006
Identities = 15/134 (11%), Positives = 30/134 (22%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643
GTGKT L K I + + V A I+
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVA 66
Query: 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKALLR 703
+ A+ + + ++ +++ + + D
Sbjct: 67 SQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEE 126
Query: 704 PGRFDRQIFVPAPD 717
I V +
Sbjct: 127 LVIDRHVIAVASDV 140
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 36.2 bits (82), Expect = 0.010
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 619
+ G +GK++L A N G EF+
Sbjct: 12 ILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEK 47
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 35.8 bits (81), Expect = 0.014
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643
+TGP G GK+ K A + + + G M VG +A
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGF 679
E E + ++D
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDV 101
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 35.8 bits (82), Expect = 0.020
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 574 LGAKIPKGAMLTGPPGTGKTLLAKATA----------GEANVPFITVSGSEFL--EMFVG 621
L + +L G G GKT +A+ A A+ ++ L + G
Sbjct: 34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 93
Query: 622 VGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673
R + + + ILFIDEI + G GG + N + LL
Sbjct: 94 DFEKRFKALLKQLEQDTNSILFIDEIHTII--GAGAASGGQVDAANLIKPLL 143
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.034
Identities = 23/183 (12%), Positives = 49/183 (26%), Gaps = 21/183 (11%)
Query: 580 KGAMLTGPPGTGKTLLAKATA------GEANVPFITVSGSEFLEMFVGVGPSRVRDMFSM 633
+ LTGPPG GKT L + G F T + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 634 ARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQ---------ENTLNQLLVEMDGFNTTTN 684
+R E +F + +++ G +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 685 VVVLAATNRVDVLDKALL--RPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLS 742
+ + A + ++ + +I+ R + ++ T +R+ L
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV----TKENRNHLL 177
Query: 743 RKL 745
+
Sbjct: 178 PDI 180
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 33.9 bits (76), Expect = 0.052
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITV 610
L GP G GK+ + + A + N+ F
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 34.0 bits (77), Expect = 0.081
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 546 KDVAGCEEAKVEIMEFVNFLKNPQQYIDLGA-KIPKGAML-TGPPGTGKTLLAKATAGEA 603
V G ++A + E + LG P G+ L GP G GKT + +
Sbjct: 22 MLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 76
Query: 604 NVPFITVSGSEFLE-----MFVGVGPSRV-----RDMFSMARKHAPCILFIDEIDAVGRK 653
+ + SE++E +G P V + KH +L +DEI+
Sbjct: 77 GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD 136
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.1 bits (74), Expect = 0.083
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITV 610
L G G+GK+ +A A + + F+
Sbjct: 11 LMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.9 bits (76), Expect = 0.083
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVG 623
LG + ++ G G+GKT + + P E +
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQ 78
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 33.5 bits (75), Expect = 0.087
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 577 KIPKGAMLTGPPGTGKTLLAKATA 600
+ ++ PG G L A +
Sbjct: 22 RGHHALLIQALPGMGDDALIYALS 45
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.0 bits (74), Expect = 0.095
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
+ G G G T + + A F+
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFV 31
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.7 bits (73), Expect = 0.10
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVS 611
L G PG+GK+ + + A V +
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 33.5 bits (75), Expect = 0.10
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMF 631
LG + G++ L G TGK+ L A +P G G R +
Sbjct: 27 LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV 86
Query: 632 SMARKH 637
S+A++
Sbjct: 87 SIAQRF 92
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.0 bits (74), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
LTG PG GKT L K A ++ + +I
Sbjct: 9 LTGTPGVGKTTLGKELASKSGLKYI 33
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.2 bits (72), Expect = 0.15
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
G G+GK+ LA+A A + ++ F+
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFL 29
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.7 bits (73), Expect = 0.19
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMF 631
LG I A+ + G G+GKT LA A +P + + R +
Sbjct: 29 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR 88
Query: 632 SMARKH 637
+A+
Sbjct: 89 EIAQNR 94
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.5 bits (73), Expect = 0.23
Identities = 25/207 (12%), Positives = 46/207 (22%), Gaps = 11/207 (5%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643
+TG PG GK+ +A + V+ + V PS S+
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVA-------VIAVDPSSPVTGGSILGDKTRMNDL 111
Query: 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKA--- 700
A R G + Q LL E G++ V + +V
Sbjct: 112 ARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCF 171
Query: 701 -LLRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDRDDLSRKLAALTPGFTGADIAN 759
L+ + + A + ++ + +
Sbjct: 172 ISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEW 231
Query: 760 VCNEAALIAARDLHTTIVMKHFEQAIE 786
A +
Sbjct: 232 QPRVLTCSALEKRGIDEIWHAIIDFKT 258
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 32.0 bits (71), Expect = 0.30
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMF 631
LG I A+ G TGKT L+ A +P + R +
Sbjct: 30 LGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 89
Query: 632 SMARKH 637
+A +
Sbjct: 90 DIADRF 95
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.5 bits (70), Expect = 0.33
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 579 PKGA--MLTGPPGTGKTLLAKATAGEANVPFI 608
PKG ++TG PGTGKT +A+ A E +
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.7 bits (70), Expect = 0.33
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 574 LGAKIPKGAM--LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMF 631
L I G++ + G TGKT + A +P G G R +
Sbjct: 16 LQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL 75
Query: 632 SMARKHAPCILFIDEIDAVGR 652
++A ++ + + A R
Sbjct: 76 AVAERYGLSGSDVLDNVAYAR 96
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 31.2 bits (70), Expect = 0.33
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 559 MEFVNFLKNPQQYIDLGAKI---------PKGAM--LTGPPGTGKTLLAKATAGEANVPF 607
++ + + G K K M L G G GKT L +
Sbjct: 2 ESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61
Query: 608 ITVSGSEFLEMFVGVGPSRVR--DMFSMARKHAPCILFIDE 646
S + L + + D++ +A + I +
Sbjct: 62 NVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRD 102
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.1 bits (69), Expect = 0.37
Identities = 16/157 (10%), Positives = 37/157 (23%), Gaps = 15/157 (9%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILF 643
+TG PG GKT L K + + E + + + I
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKR----AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 644 IDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVLDKA--L 701
+ G + L +V ++D+ +
Sbjct: 61 SKFFTSKKLV-------GSYGVNVQYFEELAIPILERAYRE--AKKDRRKVIIIDEIGKM 111
Query: 702 LRPGRFDRQIFVPAPDIKGRASIFKVHLKPLKTDLDR 738
+ R + + + ++ + +
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 30.7 bits (68), Expect = 0.56
Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 1/156 (0%)
Query: 577 KIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARK 636
K K + G PG+GK + + ++ G M +
Sbjct: 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST-GDLLRAEVSSGSARGKMLSEIMEKG 64
Query: 637 HAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDV 696
+ + ++ G E ++L +
Sbjct: 65 QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPET 124
Query: 697 LDKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732
+ K LL+ G ++ IK R + +P+
Sbjct: 125 MTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPV 160
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 31.2 bits (70), Expect = 0.60
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 582 AMLTGPPGTGKTLLAKATA---GEANVP-------FITVSGSEFLEMFVGVGP--SRVRD 629
+L G PG GKT + + A + +VP +++ L G R++
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 630 MFSMARKH-APCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLL 673
+ + ILFIDE+ V G + N L L
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPAL 147
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.8 bits (68), Expect = 0.73
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 12/111 (10%)
Query: 544 RFKDVAGCEEAKVEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 603
+V + A + LK+ A +P + GPPGTGKT A E
Sbjct: 10 NLDEVTAQDHAVTVLK---KTLKS--------ANLPH-MLFYGPPGTGKTSTILALTKEL 57
Query: 604 NVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKR 654
P + S L G S VR+ + +++
Sbjct: 58 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPP 108
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.8 bits (68), Expect = 0.75
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 586 GPPGTGKTLLAKATAGEANVPFI 608
GP G GK L KA A +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLL 32
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.3 bits (67), Expect = 0.80
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 11/155 (7%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITV-----SGSEFLEMFVGVGPSRVRDMFSMARKHA 638
+ G PG GK + + + ++ + G + +
Sbjct: 13 VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 72
Query: 639 PCILFIDE-IDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDVL 697
L + D V + G + + ++ +L D++
Sbjct: 73 TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKF-----ILFFDCPEDIM 127
Query: 698 DKALLRPGRFDRQIFVPAPDIKGRASIFKVHLKPL 732
+ LL G+ + IK R + FK P+
Sbjct: 128 LERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV 162
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.9 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 579 PKG--AMLTGPPGTGKTLLAKATAGEANVPFITV 610
PKG A+L GPPG GK A A V +
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.4 bits (67), Expect = 1.1
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 574 LGAKIPKGA--MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 618
+P G +++G GTGKTL + + F E
Sbjct: 19 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 65
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.7 bits (65), Expect = 1.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFI 608
LTG +GK +A+A N
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGG 35
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 1.2
Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 16/223 (7%)
Query: 579 PKGAMLTGPPGTGKTLLAK---ATAGEANVPFITVS-GSEFLEMFVGVGPSRVR------ 628
P+ ++ G GTGK++L + T + V + L F +
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRT 109
Query: 629 ---DMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNV 685
F+ R + + G+ + + + + G + +
Sbjct: 110 KGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMREL 169
Query: 686 VVLAATNRVDVLDKALLRPGRFDRQIFVPAPDI-KGRASIFKVHLKPLKTDLDRDDLSRK 744
D L L G +F + + K S V L + D
Sbjct: 170 FHWTTIATFDDLRGFL--EGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFS 227
Query: 745 LAALTPGFTGADIANVCNEAALIAARDLHTTIVMKHFEQAIER 787
+ + G ++ E A R L + V +
Sbjct: 228 IRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSL 270
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.0 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 586 GPPGTGKTLLAKATAGEANVPFI 608
GP +GK+ +AK A + ++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 30.1 bits (67), Expect = 1.4
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 546 KDVAGCEEAKVEIMEFV----NFLKNPQQYIDLGAKIPKGAML-TGPPGTGKTLLAKATA 600
K V G +EA + + + LK+P + P G+ L GP G GKT LAK A
Sbjct: 23 KRVVGQDEAIRAVADAIRRARAGLKDPNR--------PIGSFLFLGPTGVGKTELAKTLA 74
Query: 601 GE---ANVPFITVSGSEFLE-----MFVGVGPSRV----RDMFSMARKHAP-CILFIDEI 647
I + +E++E +G P V + A + P ++ DEI
Sbjct: 75 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEI 134
Query: 648 DAVGRK 653
+
Sbjct: 135 EKAHPD 140
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.5 bits (65), Expect = 1.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFI 608
P+ + G PG GK+ + A +
Sbjct: 14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 1.5
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 574 LGAKIPKGA--MLTGPPGTGKTLLAKATAGEA 603
G K + + TG GTGKTLL A
Sbjct: 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENA 50
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 1.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 584 LTGPPGTGKTLLAKATA 600
LTG G GKT ++ A
Sbjct: 24 LTGLSGAGKTTVSMALE 40
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB,
C-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 171
Score = 29.0 bits (65), Expect = 1.8
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 242 WRIILSENVPKGFEKFYPDKNKKSAEKPKEEGKPSDSTQPPLSKPDLSSSRSGSSPWNMG 301
++I + P GF + PSDS + S + + M
Sbjct: 6 FKIGEWDGQPTGF--RNAANQLRM--------HPSDSRMSSWGPLTYTVGSSALTDFPMA 55
Query: 302 VFGGGGGKWRIILS-ENVPKG 321
VF I + + G
Sbjct: 56 VFKSVNNPVTIKFTATSAQTG 76
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.1 bits (64), Expect = 1.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITVS 611
P M++G P +GK + + + I+
Sbjct: 3 PLKVMISGAPASGKGTQCELIKTKYQLAHISAG 35
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.8 bits (64), Expect = 2.3
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 18/134 (13%)
Query: 580 KGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAP 639
G ++TG G GK+ A + + + +E+ R + +
Sbjct: 16 VGVLITGDSGIGKSETA-LELIKRGHRLV---ADDNVEI-------REISKDELIGRAPK 64
Query: 640 CILFIDEIDAVGRKRGGRNFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNR-VDVLD 698
I + EI +G FG S +L + ++ ++ + + +LD
Sbjct: 65 LIEHLLEIRGLGIINVMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEETLRILD 124
Query: 699 KAL------LRPGR 706
+ +RPGR
Sbjct: 125 TEITKKTIPVRPGR 138
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.8 bits (63), Expect = 2.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITV 610
+L GPPG GK A + +
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.9 bits (64), Expect = 2.5
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 572 IDLGAKIPKGAMLTGPPGTGKT----LLAKATAGEAN----VPFITVSGSEFLEMFVGVG 623
+++ K P ++ G G GKT LA+ + T + ++ V
Sbjct: 2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ 61
Query: 624 PSRVRDMFSMARKHAPCILF-------IDEIDAVGRKRGGRN 658
+ + + + ++F ID + GR
Sbjct: 62 RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRL 103
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 2.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 583 MLTGPPGTGKTLLAKATA 600
++ G P GKT ++K
Sbjct: 6 VMVGLPARGKTYISKKLT 23
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 2.7
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCIL 642
+ G PG+GK+ A+ N F ++ ++ + + +
Sbjct: 6 LTIGCPGSGKSTWAREFI-AKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 643 F 643
F
Sbjct: 65 F 65
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 28.6 bits (63), Expect = 2.8
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITV 610
+ G PG+GK ++ + ++
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.3 bits (62), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPFITV 610
L GPPG GK A A + +P I+
Sbjct: 5 LLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.6 bits (64), Expect = 3.1
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 556 VEIMEFVNFLKNPQQYIDLGAKIPK--GAMLTGPPGTGKTLLAKA 598
+E + F+ LK+ PK + GP TGK+ +
Sbjct: 34 IEFITFLGALKS------FLKGTPKKNCLVFCGPANTGKSYFGMS 72
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 28.9 bits (64), Expect = 3.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 697 LDKALLRPGRFDRQIFVPAPD 717
+ K L R G F F P+ +
Sbjct: 9 VKKFLERSGPFTHPDFEPSTE 29
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.6 bits (62), Expect = 3.8
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 1/105 (0%)
Query: 565 LKNPQQYIDLGAKIPKG-AMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVG 623
+KN + + D + +G ++ G G+GK+ L A P + VG
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGAR 67
Query: 624 PSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGHSEQENT 668
+ + +F + + G + G+ + T
Sbjct: 68 DTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVT 112
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.1 bits (62), Expect = 4.6
Identities = 1/24 (4%), Positives = 5/24 (20%)
Query: 584 LTGPPGTGKTLLAKATAGEANVPF 607
+ G + ++
Sbjct: 20 INGEDLSYPREVSLELPEYVEKFP 43
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 4.9
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFSMARKHAPCIL 642
M+T G GK+ + A + G LE V + + + R L
Sbjct: 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSL 98
Query: 643 FIDEID 648
+ I+
Sbjct: 99 KREIIE 104
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 5.3
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 562 VNFLKN-PQQYIDLGAKIPKGAMLTGPPGTGKTLLAKA 598
+ FL ++ + G K P +GP G+GK+ +
Sbjct: 9 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQ 46
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 27.6 bits (60), Expect = 6.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITV 610
+L G PG GK A+ +P I+
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.5 bits (60), Expect = 7.2
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 583 MLTGPPGTGKTLLAKATA 600
LTG +GK+ LA
Sbjct: 28 WLTGLSASGKSTLAVELE 45
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 7.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 580 KGAMLTGPPGTGKTLLAKA 598
G +LTG G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.2 bits (59), Expect = 8.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITV 610
+L G PG GK A + P I+
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.2 bits (60), Expect = 8.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 580 KGAMLTGPPGTGKTLLA 596
G ++TG G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 27.2 bits (59), Expect = 8.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 583 MLTGPPGTGKTLLAKATAGEANVPFITVS 611
+L G P GK A+ + +P I+
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 27.2 bits (59), Expect = 9.0
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 579 PKGAMLTGPPGTGKTLLAKATAGEANVPFITV 610
P + G PG GK + ++
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 27.2 bits (60), Expect = 9.1
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 714 PAPDIKGRASIFK--VHLKPLKTDLDRDDLSRK--LAALTPGFTGADIANVCNEA 764
I+ + ++ KP++ +D+ L P T DI +C EA
Sbjct: 6 IEYRIEEAVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEA 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,889,009
Number of extensions: 191373
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 103
Length of query: 1036
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 941
Effective length of database: 1,103,246
Effective search space: 1038154486
Effective search space used: 1038154486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)