BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5445
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48613|TIPE_DROME Protein tipE OS=Drosophila melanogaster GN=tipE PE=2 SV=1
Length = 452
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%)
Query: 56 KRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRT 115
KRT K+K+ FYTT+FF + + + LFLVP ++PA +T+ F P C T
Sbjct: 7 KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQFEEVPALCETYDTEI 66
Query: 116 ETGIFNCTWSSCREGCTSDMYKCFQIFVKY 145
G NC+WSSCREGCT D+Y C QI V Y
Sbjct: 67 YYGAKNCSWSSCREGCTKDIYTCTQIRVNY 96
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 158 YVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYI 217
Y A L N+KGCGYPP + C + Y +PCYYS+ + ++V+ D +
Sbjct: 217 YYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGMKFPCYYSKVDPSLVISDLDYWQNTLN 276
Query: 218 IIHYFIIP---FIICVV 231
+++ IP FII V+
Sbjct: 277 LVYSMAIPIPSFIISVI 293
>sp|Q9ESK8|KCMB4_RAT Calcium-activated potassium channel subunit beta-4 OS=Rattus
norvegicus GN=Kcnmb4 PE=2 SV=1
Length = 210
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 28/181 (15%)
Query: 76 VSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETG-IFNCTWSSCREGCTSD 134
VS SL ++ PA+ D C T+L+ + G +F CT++ + +
Sbjct: 26 VSGILSLFIFGFCWLSPALQ----DLQATAANC-TVLSVQQIGEVFECTFTCGTDCRGTS 80
Query: 135 MYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQD---- 190
Y C Q++V + N S L+ D LL N K C Y P + N +S + +
Sbjct: 81 QYPCVQVYVNNSESN---SRALLHSDQHQLLTNPK-CSYIPPCKRENQKNSESVMNWQQY 136
Query: 191 -------KSYPCYYS---RKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMH 240
+ + CY++ R ++ +DE +++H F+ P + VV +++ +
Sbjct: 137 WKDEIGSQPFTCYFNQHQRPEDVLLQRTHDE----IVLLHCFLWPVVAFVVGVLIVVLTI 192
Query: 241 C 241
C
Sbjct: 193 C 193
>sp|Q9JIN6|KCMB4_MOUSE Calcium-activated potassium channel subunit beta-4 OS=Mus musculus
GN=Kcnmb4 PE=1 SV=1
Length = 210
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 76 VSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETG-IFNCTWSSCREGCTSD 134
VS SL ++ PA+ D C T+L+ + G +F CT++ + +
Sbjct: 26 VSGILSLFIFGFCWLSPALQ----DLQATAANC-TVLSVQQIGEVFECTFTCGTDCRGTS 80
Query: 135 MYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQD---- 190
Y C Q++V + N S L+ D LL N K C Y P + N +S + +
Sbjct: 81 QYPCVQVYVNNSESN---SRALLHSDQHQLLTNPK-CSYIPPCKRENQKNSESVMNWQQY 136
Query: 191 -------KSYPCYYS---RKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMH 240
+ + CY++ R ++ +DE ++H F+ P + VV +++ +
Sbjct: 137 WKDEIGSQPFTCYFNQHQRPEDVLLQRTHDE----IALLHCFLWPVVAFVVGVLIVVLTI 192
Query: 241 C 241
C
Sbjct: 193 C 193
>sp|Q86W47|KCMB4_HUMAN Calcium-activated potassium channel subunit beta-4 OS=Homo sapiens
GN=KCNMB4 PE=1 SV=2
Length = 210
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 28/181 (15%)
Query: 76 VSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETG-IFNCTWSSCREGCTSD 134
+S SL ++ PA+ D C T+L+ + G +F CT++ + +
Sbjct: 26 ISGVVSLFIFGFCWLSPALQ----DLQATEANC-TVLSVQQIGEVFECTFTCGADCRGTS 80
Query: 135 MYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQ---------CANFASS 185
Y C Q++V + N S L+ D LL N K C Y P + N+
Sbjct: 81 QYPCVQVYVNNSESN---SRALLHSDEHQLLTNPK-CSYIPPCKRENQKNLESVMNWQQY 136
Query: 186 YGMQDKSYP--CYYS---RKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMH 240
+ + S P CY++ R + ++ +DE +++H F+ P + VV +++ +
Sbjct: 137 WKDEIGSQPFTCYFNQHQRPDDVLLHRTHDE----IVLLHCFLWPLVTFVVGVLIVVLTI 192
Query: 241 C 241
C
Sbjct: 193 C 193
>sp|Q58791|Y1396_METJA Uncharacterized protein MJ1396 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1396 PE=4 SV=1
Length = 2894
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 74 TAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPV----TCVTILNRTETGIFNCTWSSCRE 129
T V G ++L L + +P I + +D + V IL ETG+ N T SC
Sbjct: 2007 TYVKNGDNVLNLEEISPNPIIDNVGADTYIGNIFFENVSVGILGN-ETGLNNLTLKSCG- 2064
Query: 130 GCTSDMY-KCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGM 188
+Y K VK VDY+ + PLY+DN L +N G GY + +A Y
Sbjct: 2065 -----IYGKILNAGVKLVDYDWSLQNYPLYIDN--LTINASG-GYGISMLNKIWAMLYNS 2116
Query: 189 Q 189
Q
Sbjct: 2117 Q 2117
>sp|Q9Y704|MOK14_SCHPO Cell wall alpha-1,3-glucan synthase mok14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mok14 PE=1 SV=1
Length = 1369
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 225 PFIICVVCSIVLCVMHCECQCNDNIA 250
PF IC++ ++ LC+M+ C +NI+
Sbjct: 1342 PFWICLILNVALCIMYLRCYHRENIS 1367
>sp|Q9UBS9|SUCO_HUMAN SUN domain-containing ossification factor OS=Homo sapiens GN=SUCO
PE=1 SV=1
Length = 1254
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 221 YFIIPFIICVVCSIVLCVMHCE--CQCNDNIATSLPPSKQRP 260
Y +I ++CVV ++LC+ C Q + + + LP S Q P
Sbjct: 1013 YLVISLVLCVVLGLMLCMQRCRNTSQFDGDYISKLPKSNQYP 1054
>sp|Q710E6|SUCO_RAT SUN domain-containing ossification factor OS=Rattus norvegicus
GN=Suco PE=2 SV=1
Length = 1253
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 221 YFIIPFIICVVCSIVLCVMHCE--CQCNDNIATSLPPSKQRP 260
Y ++ ++CVV ++LC+ C Q + + + LP S Q P
Sbjct: 1014 YLVMSLVLCVVLGLMLCMQRCRNTSQFDGDYTSKLPKSNQYP 1055
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,016,439
Number of Sequences: 539616
Number of extensions: 4729704
Number of successful extensions: 11873
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11869
Number of HSP's gapped (non-prelim): 16
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)