Query psy5445
Match_columns 315
No_of_seqs 54 out of 56
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 17:45:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 59.9 2.7 9.3E-05 32.3 0.9 43 208-255 11-53 (67)
2 2zxe_G FXYD10, phospholemman-l 51.9 10 0.00034 29.7 2.9 47 208-259 13-59 (74)
3 2jo1_A Phospholemman; FXYD1, N 47.9 14 0.00049 28.7 3.2 33 208-243 10-42 (72)
4 3j20_X 30S ribosomal protein S 22.3 83 0.0028 24.3 3.6 30 132-170 18-47 (71)
5 3hd7_A Vesicle-associated memb 20.6 71 0.0024 24.6 3.0 15 24-38 31-45 (91)
6 1ne3_A 30S ribosomal protein S 20.5 1.1E+02 0.0039 23.4 4.0 31 131-170 15-45 (68)
7 2knc_A Integrin alpha-IIB; tra 17.9 97 0.0033 22.6 3.0 16 226-241 21-36 (54)
8 1ny4_A 30S ribosomal protein S 17.8 1.2E+02 0.0041 24.0 3.7 31 131-170 17-47 (82)
9 2xzm_1 Ribosomal protein S28E 17.2 1.2E+02 0.004 23.3 3.4 30 132-170 18-47 (68)
10 1v54_I STA, cytochrome C oxida 16.0 1.4E+02 0.0047 22.9 3.6 45 56-103 9-56 (73)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=59.85 E-value=2.7 Score=32.27 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=26.4
Q ss_pred ecCHHHHHHHhhhhhhhhhhHHHHhhhhhhhhhcccccccccccCCCC
Q psy5445 208 KYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPP 255 (315)
Q Consensus 208 ryd~d~t~~~Ll~a~~VP~vlFvISvi~L~i~hc~C~C~~~~~~~~~p 255 (315)
.||++ +++ +-.+++-.|+|++++++|+-=. |+|..+..++.+|
T Consensus 11 ~YDY~-tLR--igGLifA~vLfi~GI~iilS~k--crCk~~qk~~~~~ 53 (67)
T 2jp3_A 11 YYDWE-SLQ--LGGLIFGGLLCIAGIALALSGK--CKCRRNHTPSSLP 53 (67)
T ss_dssp GGGGH-HHH--HHHHHHHHHHHHHHHHHHHTTH--HHHHHTCCTTTST
T ss_pred ccchH-Hhe--ecchhhHHHHHHHHHHHHHcCc--ccccCCCCCCCCC
Confidence 47774 553 4456666788998887766554 5565555444444
No 2
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=51.86 E-value=10 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=19.7
Q ss_pred ecCHHHHHHHhhhhhhhhhhHHHHhhhhhhhhhcccccccccccCCCCCCCC
Q psy5445 208 KYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPPSKQR 259 (315)
Q Consensus 208 ryd~d~t~~~Ll~a~~VP~vlFvISvi~L~i~hc~C~C~~~~~~~~~psk~~ 259 (315)
.||++ +++ +-.+++-.|+|++++++|.-= .|+|+.+.-++-.|-+++
T Consensus 13 ~YDY~-tLR--igGLifA~vLfi~GI~iilS~--kcrCk~~qk~~~~p~d~~ 59 (74)
T 2zxe_G 13 TYDYY-RLR--VVGLIVAAVLCVIGIIILLAG--KCRCKFNQNKRTRSNSGT 59 (74)
T ss_dssp CCCHH-HHH--HHHHHHHHHHHHHHHHHHTTT--C-----------------
T ss_pred ccchH-Hhe--eccchhHHHHHHHHHHHHHcC--ccccCCCCCCCCCCCccc
Confidence 57884 553 445666678898887766544 556665554443343333
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=47.87 E-value=14 Score=28.69 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=22.9
Q ss_pred ecCHHHHHHHhhhhhhhhhhHHHHhhhhhhhhhccc
Q psy5445 208 KYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCEC 243 (315)
Q Consensus 208 ryd~d~t~~~Ll~a~~VP~vlFvISvi~L~i~hc~C 243 (315)
.||++ +++ +-.+++-.++|++++++|+-=.|.|
T Consensus 10 ~YDY~-tLR--iGGLifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 10 TYDYQ-SLQ--IGGLVIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp GCSTH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchH-Hhh--ccchHHHHHHHHHHHHHHHcCcccc
Confidence 47874 553 4456666789999888777666655
No 4
>3j20_X 30S ribosomal protein S28E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.30 E-value=83 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=20.9
Q ss_pred ccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 132 TSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 132 Tsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
|.....|+|++|.+... +..+..+.=|+||
T Consensus 18 TGs~G~~tQVrve~l~g---------~d~~R~i~RNVKG 47 (71)
T 3j20_X 18 TGTTGDVTQVKVRILEG---------RDKGRVIRRNVRG 47 (71)
T ss_dssp CCSSCCEEEEEEEECSS---------SSCSCEEEEEEES
T ss_pred CcCCccEEEEEEEEeec---------CCCCCEEEeeccC
Confidence 56788999999999753 1223456667776
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.61 E-value=71 Score=24.60 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=7.5
Q ss_pred cCCCcccccchHHHH
Q psy5445 24 RGSSSELLLDPQQQL 38 (315)
Q Consensus 24 r~~sselll~~~~~~ 38 (315)
||..=|.|.++.++|
T Consensus 31 RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 31 RDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH
Confidence 455555555554443
No 6
>1ne3_A 30S ribosomal protein S28E; beta protein, structural genomics, OCSP, NESG, protein structure initiative, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: b.40.4.5
Probab=20.54 E-value=1.1e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=21.6
Q ss_pred cccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 131 CTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 131 CTsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
=|.....|+|++|.+... ......+.=|+||
T Consensus 15 RTGs~G~~tQVrv~~l~~---------~~~~R~i~RnVkG 45 (68)
T 1ne3_A 15 RTGMTGEVMQVKCRILDG---------RDKGRILTRNVMG 45 (68)
T ss_dssp CSSSSSSSEEEEEEESSS---------SSCSCEEEEEECS
T ss_pred cccCcCcEEEEEEEEccC---------CCCCcEEEeeccC
Confidence 367789999999999763 1123456667776
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.89 E-value=97 Score=22.58 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=10.2
Q ss_pred hhHHHHhhhhhhhhhc
Q psy5445 226 FIICVVCSIVLCVMHC 241 (315)
Q Consensus 226 ~vlFvISvi~L~i~hc 241 (315)
..+.+.+.+++++|-|
T Consensus 21 ~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 21 GGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3445556677777865
No 8
>1ny4_A 30S ribosomal protein S28E; JR19, structure, autostructure, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Pyrococcus horikoshii} SCOP: b.40.4.5
Probab=17.76 E-value=1.2e+02 Score=24.00 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=21.1
Q ss_pred cccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 131 CTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 131 CTsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
=|.....|+|++|.+... ...+..+.=|+||
T Consensus 17 RTGs~G~~TQVrVe~l~~---------~~~~R~i~RNVKG 47 (82)
T 1ny4_A 17 RTGTTGDVTQVKVRILEG---------RDKGRVIRRNVRG 47 (82)
T ss_dssp CCCSSSSEEEEEEEESSS---------SSCSCEEEEEEES
T ss_pred cccCcCcEEEEEEEEccC---------CCCCcEEEeeccC
Confidence 366789999999999763 1123456666766
No 9
>2xzm_1 Ribosomal protein S28E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_1
Probab=17.16 E-value=1.2e+02 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=21.0
Q ss_pred ccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 132 TSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 132 Tsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
|.....|+|++|.+.... ..+..+.=|+||
T Consensus 18 TGs~G~~tQVrv~~l~~~---------~~~R~i~RnVkG 47 (68)
T 2xzm_1 18 TGSRGGITQVRVVLISGK---------EEGRQLIRNVKG 47 (68)
T ss_dssp ECCCCCEEEEEEEECSSS---------CCSCEEEEEEES
T ss_pred ccCCCcEEEEEEEECcCC---------CCCcEEEeeccC
Confidence 567889999999997631 123456667776
No 10
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=15.97 E-value=1.4e+02 Score=22.87 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhccceeech---hhhhhhcCCCC
Q psy5445 56 KRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDP---AISTLTSDFNP 103 (315)
Q Consensus 56 ~~t~rek~~FYtT~~l~~~av~S~fafLFLVPfvVdP---AisTi~adFdp 103 (315)
.|-+.-|-+..-...-.++++.+.++|=| ++.|| |-.++...+|+
T Consensus 9 mrgLl~~~lr~~i~~a~~lsl~~~~~~k~---~v~~pRK~aYadFYknYD~ 56 (73)
T 1v54_I 9 MRGLLARRLRFHIVGAFMVSLGFATFYKF---AVAEKRKKAYADFYRNYDS 56 (73)
T ss_dssp CBSHHHHHHHHHHHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHTCCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhcCc
Confidence 44444443333333334455666667777 78888 66677777765
Done!