Query psy5445
Match_columns 315
No_of_seqs 54 out of 56
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 17:45:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bs2c1 f.21.2.1 (C:1-254) Fum 20.7 34 0.0025 28.6 3.5 46 57-102 206-251 (254)
2 d2axti1 f.23.37.1 (I:1-35) Pho 17.9 41 0.003 21.4 2.5 25 62-93 5-29 (35)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 15.7 80 0.0058 21.4 4.0 31 50-80 33-63 (86)
4 d1kqfc_ f.21.1.1 (C:) Formate 15.0 62 0.0045 25.0 3.6 33 52-84 4-36 (216)
5 d1ne3a_ b.40.4.5 (A:) Ribosoma 13.9 97 0.007 22.0 4.0 32 130-170 14-45 (68)
6 d1ny4a_ b.40.4.5 (A:) Ribosoma 13.6 87 0.0063 22.4 3.7 31 131-170 17-47 (71)
7 d2axtf1 f.23.38.1 (F:11-45) Cy 12.6 47 0.0034 21.0 1.7 18 218-235 12-29 (35)
8 d3c7bb2 d.58.36.2 (B:4-122) Di 11.2 39 0.0029 26.1 1.3 17 272-290 4-20 (119)
9 d1v54d_ f.23.1.1 (D:) Mitochon 10.4 1.4E+02 0.01 23.4 4.5 79 12-97 30-108 (144)
10 d1zu1a2 g.37.1.4 (A:74-128) ds 9.6 37 0.0027 23.4 0.5 8 308-315 21-28 (55)
No 1
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=20.68 E-value=34 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccceeechhhhhhhcCCC
Q psy5445 57 RTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFN 102 (315)
Q Consensus 57 ~t~rek~~FYtT~~l~~~av~S~fafLFLVPfvVdPAisTi~adFd 102 (315)
|....++..-.+++|+.+|++|+.+|+.+===--||+..+-.+|++
T Consensus 206 R~~~~~~~~~l~~~~i~lG~~sl~~fv~~G~e~~~~~~~~~~~~~~ 251 (254)
T d2bs2c1 206 RANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYK 251 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCccccccccchh
Confidence 4555666777778888999999999888544445788888888875
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.86 E-value=41 Score=21.37 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeechh
Q psy5445 62 KIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPA 93 (315)
Q Consensus 62 k~~FYtT~~l~~~av~S~fafLFLVPfvVdPA 93 (315)
|+.-||...| ..|+|.|.||. =||+
T Consensus 5 Ki~Vy~vV~f----Fv~lFiFGFLS---nDP~ 29 (35)
T d2axti1 5 KITVYIVVTF----FVLLFVFGFLS---GDPA 29 (35)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHT---TCTT
T ss_pred EEehhhHHHH----HHHHHHHhhcc---CCCC
Confidence 6667776655 45888999953 4554
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=15.69 E-value=80 Score=21.37 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=20.8
Q ss_pred hcCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy5445 50 KNKKKVKRTCKQKIWFYTTSFFAMTAVSTGS 80 (315)
Q Consensus 50 k~~~~~~~t~rek~~FYtT~~l~~~av~S~f 80 (315)
++..+..+.+-.|+..|+..+++++.+++.+
T Consensus 33 ~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~ 63 (86)
T d2vv5a3 33 RKIDATVADFLSALVRYGIIAFTLIAALGRV 63 (86)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444666788888888888777776643
No 4
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=14.96 E-value=62 Score=24.99 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5445 52 KKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLF 84 (315)
Q Consensus 52 ~~~~~~t~rek~~FYtT~~l~~~av~S~fafLF 84 (315)
|.-.+-++.++++-.+.+..+++.++||+.+.|
T Consensus 4 k~V~R~~~~~Rl~HW~~a~~~i~L~~TGl~l~~ 36 (216)
T d1kqfc_ 4 KMIVRTKFIDRACHWTVVICFFLVALSGISFFF 36 (216)
T ss_dssp SEEECSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344456899999999999999999999998865
No 5
>d1ne3a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.94 E-value=97 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=22.3
Q ss_pred ccccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 130 GCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 130 GCTsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
|=|.....|+|++|.+-.. ...+..+.=|+||
T Consensus 14 GRTG~~G~~tQVrv~~l~g---------~d~~r~i~RNVkG 45 (68)
T d1ne3a_ 14 KRTGMTGEVMQVKCRILDG---------RDKGRILTRNVMG 45 (68)
T ss_dssp CCSSSSSSSEEEEEEESSS---------SSCSCEEEEEECS
T ss_pred ccccCcCcEEEEEEEEeeC---------CCcCCEEEeeccC
Confidence 3367789999999999763 1223456667777
No 6
>d1ny4a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.64 E-value=87 Score=22.40 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=22.2
Q ss_pred cccCCccceEEEEEeecCCCCCCCCCCCCcCceEeeccCC
Q psy5445 131 CTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKG 170 (315)
Q Consensus 131 CTsd~y~C~QI~VnY~~~n~~~~e~~~~~~earLliNikG 170 (315)
=|.....|+|++|.+-.. ...+..+.=|+||
T Consensus 17 RTG~~G~~tQVrv~~l~g---------~d~~r~i~RNVkG 47 (71)
T d1ny4a_ 17 RTGTTGDVTQVKVRILEG---------RDKGRVIRRNVRG 47 (71)
T ss_dssp CCCSSSSEEEEEEEESSS---------SSCSCEEEEEEES
T ss_pred cccCcCcEEEEEEEEeeC---------CCcCCEEEecccC
Confidence 367789999999999763 1234456677776
No 7
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.65 E-value=47 Score=21.03 Aligned_cols=18 Identities=17% Similarity=0.312 Sum_probs=14.8
Q ss_pred hhhhhhhhhhHHHHhhhh
Q psy5445 218 IIHYFIIPFIICVVCSIV 235 (315)
Q Consensus 218 Ll~a~~VP~vlFvISvi~ 235 (315)
-+|+++||.+.|+-|...
T Consensus 12 avh~l~vptvfFlGai~a 29 (35)
T d2axtf1 12 AVHTLAVPTIFFLGAIAA 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhHhHHHH
Confidence 589999999999876544
No 8
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.22 E-value=39 Score=26.07 Aligned_cols=17 Identities=35% Similarity=0.864 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCcccchhhh
Q psy5445 272 GTDLGPQNYKNEELLPTIL 290 (315)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~ 290 (315)
-||+||..|. +.||.++
T Consensus 4 ~tdigpp~y~--~~~ppvi 20 (119)
T d3c7bb2 4 KTDFGPPYFR--DLLHPVI 20 (119)
T ss_dssp CCSCCSCCGG--GGSCHHH
T ss_pred cCCCCCCChH--HhCCHHH
Confidence 3899999985 5676654
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.43 E-value=1.4e+02 Score=23.39 Aligned_cols=79 Identities=22% Similarity=0.130 Sum_probs=44.8
Q ss_pred cccccchhhhhhcCCCcccccchHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccceeec
Q psy5445 12 YDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVD 91 (315)
Q Consensus 12 ~~~~~~~~~~~mr~~sselll~~~~~~r~rk~~ela~~k~~~~~~~t~rek~~FYtT~~l~~~av~S~fafLFLVPfvVd 91 (315)
.+.||++|.--|+|+=.+|=++....|=|-.+-+-.++.+ ++...++ +++..+.+++++++.+.++.=. |+.+
T Consensus 30 ~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~--~p~gewK-~v~g~~~~~i~~s~~i~~~~r~----~v~p 102 (144)
T d1v54d_ 30 LSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMN--RSTNEWK-TVVGAAMFFIGFTALLLIWEKH----YVYG 102 (144)
T ss_dssp CCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHT--CCCSHHH-HHHHHHHHHHHHHHHHHHHHHH----HTCC
T ss_pred CCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhcccccccc--CCCCchh-HHHHHHHHHHHHHHHHHHHHHH----HcCC
Confidence 3568899999999999998888776666655555444444 2334433 3444444444444333333333 3445
Q ss_pred hhhhhh
Q psy5445 92 PAISTL 97 (315)
Q Consensus 92 PAisTi 97 (315)
|.=.|+
T Consensus 103 ~~P~T~ 108 (144)
T d1v54d_ 103 PIPHTF 108 (144)
T ss_dssp CCCGGG
T ss_pred CCCCCC
Confidence 544444
No 10
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=9.57 E-value=37 Score=23.38 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=6.1
Q ss_pred ceeecccC
Q psy5445 308 NLFCTLCN 315 (315)
Q Consensus 308 ~~~~~~~~ 315 (315)
|-||.+||
T Consensus 21 nk~C~lCn 28 (55)
T d1zu1a2 21 SKCCPVCN 28 (55)
T ss_dssp TTEETTTT
T ss_pred hhhhhhhh
Confidence 44888887
Done!