RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5445
(315 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 99/298 (33%)
Query: 13 DTEQKSLVFAMRG--SSSE---LLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYT 67
+ + K + + S E +++ +L +K ++ V++ F
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-------FVE 84
Query: 68 TSF-----FAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNC 122
F M+ + T P++ T
Sbjct: 85 EVLRINYKFLMSPIKT---------EQRQPSMMTR------------------------- 110
Query: 123 TWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNA---------ILLVNIKGCGY 173
+ R+ +Y Q+F K YNV+ + L + A +L+ + G G
Sbjct: 111 MYIEQRD----RLYNDNQVFAK---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG- 162
Query: 174 PPEVQCANFASSYGMQDK-SYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVC 232
+ SY +Q K + ++ + + + E + ++
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLEMLQKL---------L 206
Query: 233 SIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDLGPQNYKNEELLPTIL 290
+ + NI K R Q ++ + L + Y+N LL +L
Sbjct: 207 YQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRL----LKSKPYEN-CLL--VL 250
Score = 28.3 bits (62), Expect = 4.4
Identities = 54/385 (14%), Positives = 101/385 (26%), Gaps = 168/385 (43%)
Query: 1 MHQHRQSLRGLYDTEQKSLVFAMRGS--------------------------------SS 28
+ RQ+L L + L+ + GS S
Sbjct: 137 YLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 29 ELLLDPQQQL---------------------------RKRKLLELAQNKN---------- 51
E +L+ Q+L R+LL+ +N
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 52 KKKVKR---TCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSD-------- 100
K +CK + TT F +T + ++ + +D TLT D
Sbjct: 256 AKAWNAFNLSCKILL---TTRFKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLK 309
Query: 101 -FN------P------NPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVD 147
+ P NP I G+ TW + + + + + ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 148 YNVTFSEEPLYVDNAILL--VNIKGCGYPPEVQC--------------ANFASSYGMQDK 191
++ ++ +I P + N Y + +K
Sbjct: 368 PAEY---RKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 192 SYPCYYSRKNTTI-VMDKY-------DEEEQMY--IIIHYFIIPFIICVVCSIVLCVMHC 241
K +TI + Y + E ++ I+ HY I
Sbjct: 420 ------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP----------------- 456
Query: 242 ECQCNDNIATSLPPSKQRPDDEQNY 266
+ +D++ +PP D Y
Sbjct: 457 KTFDSDDL---IPP----YLD--QY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 66/376 (17%), Positives = 103/376 (27%), Gaps = 155/376 (41%)
Query: 8 LRGLYDTEQKSLVFAMRGSSSELL-----------------LDPQQQLRKRK-------- 42
LR LY T LV + S+E L L+ + L
Sbjct: 173 LRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 43 -----------LLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVD 91
+++LA T K + F + +TG S + +
Sbjct: 232 LSIPISCPLIGVIQLAH------YVVTAKL-LGFTPGELRSYLKGATGHSQGLVTAV--- 281
Query: 92 PAISTLTS--DFNPNPVTCVTILNRTETGIFNCTWSSCR--------------------- 128
AI+ S F + +T+L F + R
Sbjct: 282 -AIAETDSWESFFVSVRKAITVL-------F---FIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 129 -EGCTSDMYKC-----FQIFVKYVDY-NVTF-SEEPLYVDNAILLVNIKG------CGYP 174
EG S M Q+ YV+ N + + + I LVN G G P
Sbjct: 331 NEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVE----ISLVN--GAKNLVVSG-P 382
Query: 175 PE------VQCANFASSYGM-QDKSYPCYYS-RKNTTIVMDKYDEEEQMYIIIHYF--I- 223
P+ + + G+ Q + P +S RK + F +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRI-P--FSERKLK---------------FSNRFLPVA 424
Query: 224 IPFIICVVCSIVLCVMHCEC--QCNDNIATSLPPSKQ--RPDDEQNYVKDVG-GTDLGPQ 278
PF H +D I L + D Q V D G+DL +
Sbjct: 425 SPF-------------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--R 469
Query: 279 NYKN---EELLPTILC 291
E ++ I+
Sbjct: 470 VLSGSISERIVDCIIR 485
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.1 bits (65), Expect = 1.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 13 DTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKR 57
D Q+ L G + +L + +LRKRKLL K K
Sbjct: 134 DEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKG 178
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 28.2 bits (64), Expect = 4.5
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 39 RKRKLLELAQNKNKKKVK 56
RK+KLLE Q + KK++K
Sbjct: 565 RKKKLLE-NQKEGKKRMK 581
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 28.2 bits (64), Expect = 4.6
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 39 RKRKLLELAQNKNKKKVK 56
RK+KLL+ Q + KK++K
Sbjct: 560 RKKKLLQ-KQKEGKKRMK 576
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.424
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,681,857
Number of extensions: 261153
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 15
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)