RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5445
         (315 letters)



>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
           sapiens), 1B [TaxId: 9606]}
          Length = 297

 Score = 29.4 bits (65), Expect = 0.55
 Identities = 12/145 (8%), Positives = 39/145 (26%), Gaps = 5/145 (3%)

Query: 104 NPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAI 163
                V +    E G   C     ++     +++   + +  +  ++       Y     
Sbjct: 102 KSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKS-----YYTVRQ 156

Query: 164 LLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFI 223
           L +         E+   ++ +         P  +      +        E   +++H   
Sbjct: 157 LELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSA 216

Query: 224 IPFIICVVCSIVLCVMHCECQCNDN 248
                   C    C++  + + + +
Sbjct: 217 GIGRSGTFCLADTCLLLMDKRKDPS 241


>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score = 26.6 bits (58), Expect = 4.6
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 156 PLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQM 215
             + D    +  +        +    F +S  +   S  C YS  +   V   +      
Sbjct: 277 DTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSD---VRRVFLGPYAH 333

Query: 216 YIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDL 275
               +Y  +P+   V              C          +K  PDD   + +       
Sbjct: 334 RDGPNYQWVPYQGRVPYP-------RPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYN 386

Query: 276 GPQNYKNEELLPTILCAISYRLT 298
                 N  ++      ++Y+ T
Sbjct: 387 PVFPINNRPIMIKT--DVNYQFT 407


>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 317

 Score = 25.9 bits (56), Expect = 6.4
 Identities = 12/143 (8%), Positives = 29/143 (20%), Gaps = 2/143 (1%)

Query: 107 TCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLV 166
             V         +        R  C  D Y   +         VT  +        +   
Sbjct: 104 RMVWEQRTATVVMMTRLEEKSRVKC--DQYWPARGTETCGLIQVTLLDTVELATYTVRTF 161

Query: 167 NIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPF 226
            +   G   + +   F                       +   +  +   +++H      
Sbjct: 162 ALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVG 221

Query: 227 IICVVCSIVLCVMHCECQCNDNI 249
                  I   +   + +   +I
Sbjct: 222 RTGCFIVIDAMLERMKHEKTVDI 244


>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
           [TaxId: 562]}
          Length = 117

 Score = 24.8 bits (54), Expect = 9.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 300 ANITSTYNNLFCTLCN 315
           A+I +++NN   T+ +
Sbjct: 9   AHIHASFNNTIVTITD 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,183,751
Number of extensions: 55528
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 10
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)