Query psy5448
Match_columns 322
No_of_seqs 187 out of 1047
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:48:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0015|consensus 100.0 9.3E-30 2E-34 242.0 7.3 107 115-221 41-147 (338)
2 KOG0014|consensus 99.9 4.3E-27 9.3E-32 206.2 2.5 70 136-205 1-72 (195)
3 cd00265 MADS_MEF2_like MEF2 (m 99.9 1.1E-26 2.5E-31 182.1 4.6 68 137-204 1-68 (77)
4 cd00266 MADS_SRF_like SRF-like 99.9 2.9E-25 6.3E-30 176.2 3.7 79 137-215 1-80 (83)
5 smart00432 MADS MADS domain. 99.9 7.3E-25 1.6E-29 165.0 3.8 59 137-195 1-59 (59)
6 cd00120 MADS MADS: MCM1, Agamo 99.9 4.2E-24 9E-29 160.8 3.6 59 137-195 1-59 (59)
7 PF00319 SRF-TF: SRF-type tran 99.8 3.1E-22 6.6E-27 147.0 -0.4 51 144-194 1-51 (51)
8 COG5068 ARG80 Regulator of arg 99.7 8.2E-17 1.8E-21 158.9 9.4 86 135-220 80-166 (412)
9 COG4888 Uncharacterized Zn rib 48.9 34 0.00074 29.2 4.6 49 167-217 29-81 (104)
10 PF01486 K-box: K-box region; 28.5 26 0.00056 28.4 0.8 30 225-254 10-39 (100)
11 PF05308 Mito_fiss_reg: Mitoch 28.1 1E+02 0.0023 29.7 4.9 26 225-250 120-145 (253)
12 PF15062 ARL6IP6: Haemopoietic 27.0 23 0.0005 29.2 0.2 16 28-43 70-85 (85)
13 KOG1055|consensus 25.6 51 0.0011 36.9 2.5 86 168-253 681-785 (865)
14 PF09151 DUF1936: Domain of un 24.1 1.1E+02 0.0024 21.2 3.1 27 169-195 2-30 (36)
No 1
>KOG0015|consensus
Probab=99.96 E-value=9.3e-30 Score=242.01 Aligned_cols=107 Identities=77% Similarity=1.122 Sum_probs=101.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccC
Q psy5448 115 VDEGYSPSTQKGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT 194 (322)
Q Consensus 115 ~~~~~~~~~~~~~~~~~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsS 194 (322)
.-..|++.+.....+-+||++.||+||+|+||+||.+|.+||+|||.||||||+||++|+|++|.|+|.|++|.+|+|++
T Consensus 41 ~~~~~~p~~~~~~~~~~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT 120 (338)
T KOG0015|consen 41 SVSTYTPTPNSGSQKDGGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 120 (338)
T ss_pred cccccCCCCCcccccCCCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc
Confidence 33577888788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhhhhHhhhcCCCCCCC
Q psy5448 195 RKLQPMITSEAGKALIQTCLNSPDPCP 221 (322)
Q Consensus 195 pslq~VIer~~~K~Liqr~lnspepss 221 (322)
+++++||...++++||+.|||+++...
T Consensus 121 pKLep~i~s~~Gk~lIq~cLn~pd~~~ 147 (338)
T KOG0015|consen 121 PKLEPMITSDEGKALIQACLNAPDTPP 147 (338)
T ss_pred ccccccccchhhHHHHHHHhcCCCCCC
Confidence 999999999999999999999999864
No 2
>KOG0014|consensus
Probab=99.93 E-value=4.3e-27 Score=206.17 Aligned_cols=70 Identities=36% Similarity=0.598 Sum_probs=66.0
Q ss_pred CCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCC--chhhhhhhh
Q psy5448 136 KGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK--LQPMITSEA 205 (322)
Q Consensus 136 mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSps--lq~VIer~~ 205 (322)
|||+||+|++|+|+..|+|||+|||.||||||+||||||||+|||||||++|++|+|++++ +..++++|.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~ 72 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFL 72 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999987 777776653
No 3
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.93 E-value=1.1e-26 Score=182.14 Aligned_cols=68 Identities=40% Similarity=0.663 Sum_probs=65.4
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhh
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSE 204 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~ 204 (322)
||+||+|++|+|+..|++||+|||.||||||+|||+||||+|+||||+++|++|+|++++++++|++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry 68 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERY 68 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999988888665
No 4
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.91 E-value=2.9e-25 Score=176.25 Aligned_cols=79 Identities=39% Similarity=0.571 Sum_probs=70.9
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCC-chhhhhhhhhhhhHhhhcC
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK-LQPMITSEAGKALIQTCLN 215 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSps-lq~VIer~~~K~Liqr~ln 215 (322)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||||||+++|+.+.|++++ ++.+++++.....++++.+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKKK 80 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhcc
Confidence 799999999999999999999999999999999999999999999999999999999987 8888877765555554433
No 5
>smart00432 MADS MADS domain.
Probab=99.90 E-value=7.3e-25 Score=164.98 Aligned_cols=59 Identities=51% Similarity=0.751 Sum_probs=57.7
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCC
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATR 195 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSp 195 (322)
||+||+|++|+|+..|++||+|||.||||||+|||+||||+||||||+++|++|+|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999975
No 6
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.89 E-value=4.2e-24 Score=160.81 Aligned_cols=59 Identities=46% Similarity=0.694 Sum_probs=57.4
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCC
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATR 195 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSp 195 (322)
||+||+|++|+|+..|++||+|||.||||||+|||+||||+||||||+|+|++|+|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999874
No 7
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.83 E-value=3.1e-22 Score=147.01 Aligned_cols=51 Identities=57% Similarity=0.802 Sum_probs=46.8
Q ss_pred EEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccC
Q psy5448 144 EYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT 194 (322)
Q Consensus 144 k~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsS 194 (322)
|+|+|+..|++||+|||.||||||+|||+||||+||||||+++|++|+|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 579999999999999999999999999999999999999999999999985
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.68 E-value=8.2e-17 Score=158.91 Aligned_cols=86 Identities=55% Similarity=0.769 Sum_probs=80.1
Q ss_pred CCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhhHhh-h
Q psy5448 135 TKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQT-C 213 (322)
Q Consensus 135 ~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~Liqr-~ 213 (322)
++||+||.|.+|+|+.+|.+||+|||.||+|||+||+||++++|+|+|.+++|+++.|++++++.++..-.++.+++. |
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~~~~~~li~~~~ 159 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKSLEGKSLIQSPC 159 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccccchhhhhcccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999998878888877 7
Q ss_pred cCCCCCC
Q psy5448 214 LNSPDPC 220 (322)
Q Consensus 214 lnspeps 220 (322)
.+++...
T Consensus 160 sn~~~~~ 166 (412)
T COG5068 160 SNAPSDS 166 (412)
T ss_pred cCCCccc
Confidence 7766544
No 9
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=48.91 E-value=34 Score=29.16 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=34.5
Q ss_pred cccccccc----CCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhhHhhhcCCC
Q psy5448 167 AYELSTLT----GTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSP 217 (322)
Q Consensus 167 A~ELSvLC----gaeVALIVfSptGKly~FsSpslq~VIer~~~K~Liqr~lnsp 217 (322)
-+|.++.| ...+++++....|.-|++--+.+..-++-| .++++.|++.-
T Consensus 29 ghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~vDvY--s~wvDay~eg~ 81 (104)
T COG4888 29 GHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEPVDVY--SAWVDAYLEGR 81 (104)
T ss_pred CCeeeeEEEEEecCceeEEEcccCcceEEEeccccccchhHH--HHHHHHHHhcc
Confidence 35666655 445778889999999999888887777655 34456666553
No 10
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.54 E-value=26 Score=28.38 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.2
Q ss_pred cccccccccchhhhhhhhhhhHHHHHHhhh
Q psy5448 225 GDQRMSATGFEETELSYNIGDDEQKVRQLV 254 (322)
Q Consensus 225 ~dQR~s~l~~EetkLK~EIakLe~kLRqLv 254 (322)
++.....+..|+++|+.+++.++..+|+++
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~ 39 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLM 39 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344456677999999999999999999977
No 11
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.15 E-value=1e+02 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=20.4
Q ss_pred cccccccccchhhhhhhhhhhHHHHH
Q psy5448 225 GDQRMSATGFEETELSYNIGDDEQKV 250 (322)
Q Consensus 225 ~dQR~s~l~~EetkLK~EIakLe~kL 250 (322)
..+++.+|+.|.++||.+|++.-..+
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888999999999999976543
No 12
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=26.98 E-value=23 Score=29.21 Aligned_cols=16 Identities=38% Similarity=0.829 Sum_probs=14.0
Q ss_pred CCCccCCCccccccCC
Q psy5448 28 RDSRFSMGYNMSILNN 43 (322)
Q Consensus 28 ~~~r~~~~y~m~~~~~ 43 (322)
.+.+|-|||.|.+++|
T Consensus 70 k~~s~hlgY~~AllnG 85 (85)
T PF15062_consen 70 KGHSFHLGYLMALLNG 85 (85)
T ss_pred cCceeeeeeEEEEecC
Confidence 3788999999999985
No 13
>KOG1055|consensus
Probab=25.58 E-value=51 Score=36.91 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=51.0
Q ss_pred ccccccc--CCcEEEEEEcCCCceeeccCCC----------------chhhhhhhhhhhhHhhhcCCCC-CCCCCCcccc
Q psy5448 168 YELSTLT--GTQVMLLVASETGHVYTFATRK----------------LQPMITSEAGKALIQTCLNSPD-PCPSGAGDQR 228 (322)
Q Consensus 168 ~ELSvLC--gaeVALIVfSptGKly~FsSps----------------lq~VIer~~~K~Liqr~lnspe-pss~~s~dQR 228 (322)
+-..|+| +|.|.++++|...-.|.|.+-. +..+++........++..+... .+..+..++|
T Consensus 681 yNVfv~cli~a~V~~v~~sq~da~Fa~~sl~Iifc~t~tl~lifvpKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer 760 (865)
T KOG1055|consen 681 YNVFVMCLITAPVTLVLSSQKDAAFAFVSLFIIFCSTITLCLVFVPKLRHLITNPQWASEAQRNMKTGPSSSVNENEEER 760 (865)
T ss_pred eeeeEEeeecCceeeeeecccccceehhhhHHHhhhhhhhheecchhheeeecCchhhhhhhhccccCcccccchhHHHH
Confidence 5566777 6668888888866655554432 2333444434443444333322 1122344457
Q ss_pred cccccchhhhhhhhhhhHHHHHHhh
Q psy5448 229 MSATGFEETELSYNIGDDEQKVRQL 253 (322)
Q Consensus 229 ~s~l~~EetkLK~EIakLe~kLRqL 253 (322)
-+.++.|..+|+.+|.+++++++.+
T Consensus 761 ~~~lk~EN~~l~~~i~ekee~i~e~ 785 (865)
T KOG1055|consen 761 LRLLKKENRRLRKKIMEKEERLSEL 785 (865)
T ss_pred hhhhhcccHHHHHhcccchHHHHHH
Confidence 7888889999999998877765443
No 14
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=24.14 E-value=1.1e+02 Score=21.21 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.2
Q ss_pred ccccccCCcEEEEEEcCCC--ceeeccCC
Q psy5448 169 ELSTLTGTQVMLLVASETG--HVYTFATR 195 (322)
Q Consensus 169 ELSvLCgaeVALIVfSptG--Kly~FsSp 195 (322)
.|+--||+-|.+-|++..| |+|.-+.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 4677899999999999999 45544443
Done!