Query psy5448
Match_columns 322
No_of_seqs 187 out of 1047
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:48:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_A SRF, serum response fac 100.0 1E-34 3.4E-39 234.6 1.6 89 130-218 4-92 (92)
2 1mnm_A Protein (MCM1 transcrip 100.0 8.7E-34 3E-38 232.2 2.2 90 130-219 10-99 (100)
3 1k6o_B SRF, serum response fac 100.0 9.7E-34 3.3E-38 233.0 2.2 91 131-221 4-94 (103)
4 1egw_A MADS box transcription 99.9 9.4E-30 3.2E-34 199.5 0.8 68 137-204 1-68 (77)
5 3p57_A Myocyte-specific enhanc 99.9 4.5E-29 1.6E-33 200.9 0.5 68 137-204 1-68 (90)
6 3twe_A Alpha4H; unknown functi 21.5 49 0.0017 20.7 1.8 17 238-254 5-21 (27)
7 4f02_C Eukaryotic translation 16.7 44 0.0015 21.0 0.8 13 16-29 2-14 (27)
8 1a93_B MAX protein, coiled coi 15.1 72 0.0025 21.3 1.6 22 232-253 12-33 (34)
9 3a98_B Engulfment and cell mot 14.9 4E+02 0.014 23.4 7.0 38 235-272 157-197 (203)
10 3nrf_A APAG protein; structura 12.9 76 0.0026 26.0 1.5 44 146-194 21-64 (106)
No 1
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1e-34 Score=234.63 Aligned_cols=89 Identities=93% Similarity=1.299 Sum_probs=85.5
Q ss_pred CCCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhh
Q psy5448 130 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKAL 209 (322)
Q Consensus 130 ~~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~L 209 (322)
..||++|||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++++|+++.++.|
T Consensus 4 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~Gk~L 83 (92)
T 1hbx_A 4 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL 83 (92)
T ss_dssp --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHHHHH
T ss_pred CcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcccHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCC
Q psy5448 210 IQTCLNSPD 218 (322)
Q Consensus 210 iqr~lnspe 218 (322)
|++|++.|+
T Consensus 84 i~~cl~~p~ 92 (92)
T 1hbx_A 84 IQTCLNSPD 92 (92)
T ss_dssp HHHHHHSCC
T ss_pred HHHHhcCCC
Confidence 999999875
No 2
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=8.7e-34 Score=232.19 Aligned_cols=90 Identities=61% Similarity=0.956 Sum_probs=83.6
Q ss_pred CCCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhh
Q psy5448 130 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKAL 209 (322)
Q Consensus 130 ~~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~L 209 (322)
..++++|||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|+++++.++++++.++.|
T Consensus 10 ~~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~l 89 (100)
T 1mnm_A 10 TNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL 89 (100)
T ss_dssp -----CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred CCCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCcH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCC
Q psy5448 210 IQTCLNSPDP 219 (322)
Q Consensus 210 iqr~lnspep 219 (322)
|++|++.+++
T Consensus 90 w~~cl~~~~~ 99 (100)
T 1mnm_A 90 IQACLNAPDD 99 (100)
T ss_dssp HHHHHTSCCC
T ss_pred HHHhccCCCC
Confidence 9999999875
No 3
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=9.7e-34 Score=232.98 Aligned_cols=91 Identities=92% Similarity=1.288 Sum_probs=84.2
Q ss_pred CCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhhH
Q psy5448 131 NGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALI 210 (322)
Q Consensus 131 ~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~Li 210 (322)
.||++|||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++++|+++.++.++
T Consensus 4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~Gk~l~ 83 (103)
T 1k6o_B 4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALI 83 (103)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHHHHHH
T ss_pred CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhhhHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCC
Q psy5448 211 QTCLNSPDPCP 221 (322)
Q Consensus 211 qr~lnspepss 221 (322)
+.|++.++...
T Consensus 84 ~~c~~~~~~~~ 94 (103)
T 1k6o_B 84 QTCLNSPDSPP 94 (103)
T ss_dssp HHTTCC-----
T ss_pred HHHhcCCCCCC
Confidence 99999987753
No 4
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.95 E-value=9.4e-30 Score=199.46 Aligned_cols=68 Identities=34% Similarity=0.601 Sum_probs=66.0
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhh
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSE 204 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~ 204 (322)
||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++.+|++|
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999888775
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.94 E-value=4.5e-29 Score=200.90 Aligned_cols=68 Identities=34% Similarity=0.601 Sum_probs=66.0
Q ss_pred CcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhh
Q psy5448 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSE 204 (322)
Q Consensus 137 GRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~ 204 (322)
||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++.+|++|
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999888775
No 6
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.45 E-value=49 Score=20.68 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=9.4
Q ss_pred hhhhhhhhHHHHHHhhh
Q psy5448 238 ELSYNIGDDEQKVRQLV 254 (322)
Q Consensus 238 kLK~EIakLe~kLRqLv 254 (322)
+|-+++++++..+|+++
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666555543
No 7
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=16.68 E-value=44 Score=21.00 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.2
Q ss_pred EEEeecCCCCCCCC
Q psy5448 16 EIKVMDTPTGGGRD 29 (322)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (322)
.|.|-|+.+ ||+|
T Consensus 2 ~irirdpnq-ggkd 14 (27)
T 4f02_C 2 TIRIRDPNQ-GGKD 14 (27)
T ss_pred cceecCccc-cchh
Confidence 377889998 7777
No 8
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=15.10 E-value=72 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=18.4
Q ss_pred ccchhhhhhhhhhhHHHHHHhh
Q psy5448 232 TGFEETELSYNIGDDEQKVRQL 253 (322)
Q Consensus 232 l~~EetkLK~EIakLe~kLRqL 253 (322)
...++.+||.++..|+.++|.|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999999875
No 9
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=14.86 E-value=4e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhCCCCCC---CCCCCCCCCCC
Q psy5448 235 EETELSYNIGDDEQKVRQLVYGGSPHL---PSQPQSHPHQN 272 (322)
Q Consensus 235 EetkLK~EIakLe~kLRqLv~gg~~~~---~~~~~~~~~~~ 272 (322)
|..+.-+.+.+++.++|-|=.-|.... ||.|..++++|
T Consensus 157 et~~~v~~Ll~m~lklrLLdle~v~ip~~~ppip~~P~~~d 197 (203)
T 3a98_B 157 LTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYD 197 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTCCCCSSCCCCCCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcCCCCCCCCCcCCCCcc
Confidence 444555667788888998888776544 33444444444
No 10
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=12.92 E-value=76 Score=26.04 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=36.4
Q ss_pred ecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccC
Q psy5448 146 IDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT 194 (322)
Q Consensus 146 Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsS 194 (322)
|.++.....||-=.-.-|.+|.-+|+.+ |++.|++.|+-|...+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEecc
Confidence 5667777888888899999999999955 7999999998766554
Done!