RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5448
         (322 letters)



>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 84

 Score =  112 bits (282), Expect = 5e-32
 Identities = 80/84 (95%), Positives = 83/84 (98%)

Query: 135 TKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT 194
           T+GRVKIKME+IDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASETGHVYTFAT
Sbjct: 1   TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 60

Query: 195 RKLQPMITSEAGKALIQTCLNSPD 218
           RKLQPMITSE GKALIQTCLNSPD
Sbjct: 61  RKLQPMITSETGKALIQTCLNSPD 84


>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 85

 Score =  104 bits (262), Expect = 5e-29
 Identities = 54/83 (65%), Positives = 69/83 (83%)

Query: 136 KGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATR 195
           K R KI++++I+NK RR+ TFSKRK GIMKKA+ELS LTGTQV+LLV SETG VYTF+T 
Sbjct: 2   KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Query: 196 KLQPMITSEAGKALIQTCLNSPD 218
           K +P++T + G+ LIQ CLN+PD
Sbjct: 62  KFEPIVTQQEGRNLIQACLNAPD 84


>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 71

 Score = 82.4 bits (204), Expect = 7e-21
 Identities = 23/65 (35%), Positives = 42/65 (64%)

Query: 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 196
           GR KI++  I ++  R  TF+KRK G+MKKAYELS L   ++ L++ + +  ++ +A+  
Sbjct: 1   GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 197 LQPMI 201
           +  ++
Sbjct: 61  MDKVL 65


>gi|152994664|ref|YP_001339499.1|(2-54:56) ribosomal protein L33
           [Marinomonas sp. MWYL1] 
           gi|189042692|sp|A6VSY5.1|RL33_MARMS RecName: Full=50S
           ribosomal protein L33   gi|150835588|gb|ABR69564.1|
           ribosomal protein L33 [Marinomonas sp. MWYL1] 
           gi|87120855|ref|ZP_01076747.1| RpmG protein [Marinomonas
           sp. MED121]   gi|86163693|gb|EAQ64966.1| RpmG protein
           [Marinomonas sp. MED121]   gi|92115086|ref|YP_575014.1|
           50S ribosomal protein L33P [Chromohalobacter salexigens
           DSM 3043]   gi|122419200|sp|Q1QT93.1|RL33_CHRSD RecName:
           Full=50S ribosomal protein L33 
           gi|91798176|gb|ABE60315.1| LSU ribosomal protein L33P
           [Chromohalobacter salexigens DSM 3043]  E=1e-10 s/c=1.31
           id=57% cov=102%
          Length = 53

 Score = 23.8 bits (52), Expect = 7.0
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 134 KTKGRVKIKMEYIDNKLRRYTTFSKRKT 161
               R  I+M         YTT   ++ 
Sbjct: 2   SKGARDLIRMVSSAGTGHFYTTDKNKRN 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,653
Number of extensions: 51339
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 6
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)