BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy545
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 173/421 (41%), Positives = 232/421 (55%), Gaps = 18/421 (4%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+++GC + W RP + P I TRF+LYT KNP L + TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF KKT+FIIHGFID +W+ +M + + K + N I VDW GS YTQA N
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNV 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYF 223
R+VG ++A ++ L NY +P+ V +IGHSLGAH AG AG GLGRITGLDP E F
Sbjct: 124 RVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEASF 183
Query: 224 QGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTET 282
QG P RLDPTDAD VDVIHTD + + LG+G S+ GHLDF+PN G+E PGC +
Sbjct: 184 QGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCK--KN 241
Query: 283 PLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSCG 342
L + +GI E R VACNH+R+ K ++ESI + + ++ C SY+ F +CF C
Sbjct: 242 ALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCP 301
Query: 343 ENGTGCALMGLEAQK---TNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQG 399
+ GC MG A K KY++ TG F R Y +++ L+ RA G
Sbjct: 302 DQ--GCPQMGHYADKFAVKTSDETQKYFLNTGDSSNFARWRYGVSITLSG-KRA----TG 354
Query: 400 FMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDVLQ 459
+V+L G ++ L+ G++ S DVGTI KV+F W + +V+
Sbjct: 355 QAKVALFGSKGNTHQFNIFKG---ILKPGSTHSNEFDAKLDVGTIEKVKFLW--NNNVVN 409
Query: 460 P 460
P
Sbjct: 410 P 410
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/413 (41%), Positives = 236/413 (57%), Gaps = 16/413 (3%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W ++ RP IFP IDTRF+LYT +NP + TI+
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FI+HGFID W+ +M +++ + N I VDW GS YTQA+ NT
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNT 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+A+ V L G +P +VH+IGHSLGAH G AG+ +EG +GRITGLDPAEP
Sbjct: 124 RVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG+P RLDP+DA VDVIHTD + I LG+GMS+ GHLDF+PN GKE PGC +
Sbjct: 184 FQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQ--K 241
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + GI E + VACNH+R+ K + SI + ++ + C SY+ F Q CF C
Sbjct: 242 NILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
E GC MG A + + Y+ TG F R Y++++ L+ + +
Sbjct: 302 PEE--GCPKMGHYADQFEGKTATVEQTVYLNTGDSGNFTRWRYKVSVTLSGAKK----LS 355
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G++ V+L+ +NG + ++ G K E R V +VG I KV+F W
Sbjct: 356 GYILVALYGNNGNSKQYEIF-KGSLKPEARHVRDIDVDI--NVGEIQKVKFLW 405
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/414 (41%), Positives = 234/414 (56%), Gaps = 20/414 (4%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+ LGC + W + RP +I P ++TRF+LYT +NP + + +I
Sbjct: 4 CYERLGCFSDDSPWSGITERPLHILPWSPKDVNTRFLLYTNENPNNFQEVAA-DSSSISG 62
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FIIHGFID +W+ + + L K N I VDW GGS YTQA+ N
Sbjct: 63 SNFKTNRKTRFIIHGFIDKGEENWLANVCKNLFKVESVNCICVDWKGGSRTGYTQASQNI 122
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+AYFV +L+ +G +P++VH+IGHSLGAH AG AG+ G +GRITGLDPAEP
Sbjct: 123 RIVGAEVAYFVEFLQSAFGYSPSNVHVIGHSLGAHAAGEAGRRTNGTIGRITGLDPAEPC 182
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIFL-LGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG P RLDP+DA VDVIHTDG+ I LG+GMS+ GHLDF+PN G E PGC +
Sbjct: 183 FQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGC--KK 240
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + +GI E R ACNH+R+ K +T+SI + + C SY F +CF C
Sbjct: 241 NILSQIVDIDGIWEGTRDFAACNHLRSYKYYTDSIVNPDGFAGFPCASYNVFTANKCFPC 300
Query: 342 GENGTGCALMGLEAQ----KTNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWV 397
GC MG A KTN G K+Y+ TG F R Y++++ L+ V
Sbjct: 301 PSG--GCPQMGHYADRYPGKTND-VGQKFYLDTGDASNFARWRYKVSVTLSGKK-----V 352
Query: 398 QGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G + VSL + G + ++ L+ ++ S DVG + V+F W
Sbjct: 353 TGHILVSLFGNKGNSKQYEIFKG---TLKPDSTHSNEFDSDVDVGDLQMVKFIW 403
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 305 bits (780), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 171/413 (41%), Positives = 233/413 (56%), Gaps = 18/413 (4%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+ LGC + W ++ RP I P ++TRF+LYT +NP + V + TI+
Sbjct: 4 CYERLGCFSDDSPWAGIVERPLKILPWSPEKVNTRFLLYTNENPDNFQEI-VADPSTIQS 62
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF+ +KT+FIIHGFID SW+ M + + K N I VDW GS Y+QA+ N
Sbjct: 63 SNFNTGRKTRFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWKSGSRTAYSQASQNV 122
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+AY V L+ ++ +P++VH+IGHSLG+H AG AG+ G +GRITGLDPAEP
Sbjct: 123 RIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAEPC 182
Query: 223 FQGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG P RLDP+DA VDVIHTD I LG+GMS+T GHLDF+PN GKE PGC +
Sbjct: 183 FQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQ--K 240
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + +GI + R ACNH+R+ K +T+SI + + C SY F +CF C
Sbjct: 241 NVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPC 300
Query: 342 GENGTGCALMGLEAQK---TNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
+ GC MG A + G +Y+ TG F R YR+ + L+ V
Sbjct: 301 --SSEGCPQMGHYADRFPGRTKGVGQLFYLNTGDASNFARWRYRVDVTLSGKK-----VT 353
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G + VSL + G R ++ G K ++ S F +VG + KV+F W
Sbjct: 354 GHVLVSLFGNKGNSRQYEIF-QGTLKPDNTYSNEF--DSDVEVGDLEKVKFIW 403
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/421 (40%), Positives = 235/421 (55%), Gaps = 18/421 (4%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY++LGC + T W RP I P I TRF+LYT +NP +L + + TIE
Sbjct: 29 CYEDLGCFSDTEPWGGTAIRPLKILPWSPEKIGTRFLLYTNENPNNFQILLLSDPSTIEA 88
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FIIHGFID SWV +M ++L + + N I VDW GS YTQA N
Sbjct: 89 SNFQMDRKTRFIIHGFIDKGDESWVTDMCKKLFEVEEVNCICVDWKKGSQATYTQAANNV 148
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYF 223
R+VG ++A ++ L Y P+ VH+IGHSLGAH AG AG GL RITGLDP E F
Sbjct: 149 RVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAGSKTPGLSRITGLDPVEASF 208
Query: 224 QGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTET 282
+ P RLDP+DAD VDVIHTD + + LG+G ++ GHLDF+PN G+ PGC +
Sbjct: 209 ESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCK--KN 266
Query: 283 PLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSCG 342
L + +GI R VACNH+R+ K + ESI + + A+ C SY+ F +CF C
Sbjct: 267 ALSQIVDLDGIWAGTRDFVACNHLRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPCP 326
Query: 343 ENGTGCALMGLEAQK---TNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQG 399
+ GC MG A K K+++ TG+ F R Y +++ L+ R T G
Sbjct: 327 DQ--GCPQMGHYADKFAGRTSEEQQKFFLNTGEASNFARWRYGVSITLSG--RTAT---G 379
Query: 400 FMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDVLQ 459
++V+L + G + L+ G++ S+ DVGTI+KV+F W + +V+
Sbjct: 380 QIKVALFGNKGNTHQYSIFRG---ILKPGSTHSYEFDAKLDVGTIDKVKFLW--NNNVIN 434
Query: 460 P 460
P
Sbjct: 435 P 435
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 175/424 (41%), Positives = 233/424 (54%), Gaps = 20/424 (4%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
C+ LGC + W ++ RP I P +DTRF+LYT +N L V + TI
Sbjct: 4 CFPRLGCFSDDAPWAGIVQRPLKILPWSPKDVDTRFLLYTNQNQNNYQEL-VADPSTITN 62
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FIIHGFID W+ + + L K N I VDW GGS YTQA+ N
Sbjct: 63 SNFRMDRKTRFIIHGFIDKGEEDWLSNICKNLFKVESVNCICVDWKGGSRTGYTQASQNI 122
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+AYFV LK + G +P++VH+IGHSLG+H AG AG+ G + RITGLDPAEP
Sbjct: 123 RIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAGEAGRRTNGTIERITGLDPAEPC 182
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIFL-LGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG P RLDP+DA VDVIHTD + I LG+GMS+T GHLDF+PN GK+ PGC +
Sbjct: 183 FQGTPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQ--K 240
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + +GI E R VACNH+R+ K + +SI + + C SY F +CF C
Sbjct: 241 NILSQIVDIDGIWEGTRDFVACNHLRSYKYYADSILNPDGFAGFPCDSYNVFTANKCFPC 300
Query: 342 GENGTGCALMGLEAQ----KTNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWV 397
GC MG A KTN +Y+ TG F R Y++++ L+ V
Sbjct: 301 PSE--GCPQMGHYADRFPGKTNG-VSQVFYLNTGDASNFARWRYKVSVTLSGKK-----V 352
Query: 398 QGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDV 457
G + VSL + G R ++ L+ + S +VG + KV+F W ++
Sbjct: 353 TGHILVSLFGNEGNSRQYEIYKG---TLQPDNTHSDEFDSDVEVGDLQKVKFIWYNVINP 409
Query: 458 LQPR 461
PR
Sbjct: 410 TLPR 413
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 231/413 (55%), Gaps = 16/413 (3%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W + RP P ++TRF+LYT KNP ++ ++ TI+
Sbjct: 4 CYTPLGCFSDDKPWAGTLQRPLKSLPWSPEEVNTRFLLYTNKNPDSYQLITARDVATIKS 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT F+IHGF D SW +M +++L+ N I VDW+ G+ YTQA N
Sbjct: 64 SNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNI 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E AY + L NP +VH+IGHSLGAHTAG AG+ +EG +GR+TGLDPAEP
Sbjct: 124 RIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAEPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ RLDP+DA VDVIHTD S + LG+GMS+ GH+DF+PN GK+ PGC +
Sbjct: 184 FQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSS 243
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
+ + GI + + +ACNH+++ + ++ SI + ++A+ C SY F + CF C
Sbjct: 244 FSTFIDI--NGIWQGAQDYLACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + + +++ TG+ + YR+++ LA +A
Sbjct: 302 PAG--GCPKMGHYADQYKEKTSAVEQTFFLNTGESGDYTSWRYRVSITLAGSGKA----N 355
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G+++V+L NG + ++ L+ +S + V +G I +V+F W
Sbjct: 356 GYLKVTLRGSNGNSKQYEIFKG---SLQPDSSYTLDVDVNFIIGKIQEVKFVW 405
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 278 bits (710), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 225/414 (54%), Gaps = 37/414 (8%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W RP P I+TRF+LYT +N ++ + TI+
Sbjct: 4 CYSHLGCFSDEKPWAGTSQRPIKSLPSDPKKINTRFLLYTNENQNSYQLITATDIATIKA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF+ +KT+FIIHGF D+ +SW+ +M + + + N I VDW GGS Y+QA+ N
Sbjct: 64 SNFNLNRKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNI 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGL-GRITGLDPAEPY 222
R+VG E+AY V L + P +VH+IGHSLGAHTAG AG+ + GL GRITGLDPAEPY
Sbjct: 124 RVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPY 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ P RLDP+DA VDVIHTD S I LG+GMS+ GH+DF+PN GK+ PGC
Sbjct: 184 FQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGC---- 239
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
K GI +CNH R+I+ + SI + ++ + C SY F + CF C
Sbjct: 240 --------KTGI--------SCNHHRSIEYYHSSILNPEGFLGYPCASYDEFQESGCFPC 283
Query: 342 GENGTGCALMGLEAQ----KTNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWV 397
GC MG A KTN + +++ TG F R Y++++ L+ V
Sbjct: 284 --PAKGCPKMGHFADQYPGKTNAVEQT-FFLNTGASDNFTRWRYKVSVTLSGKK-----V 335
Query: 398 QGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G + VSL + G + ++ L+ ++ S DVG + V+F W
Sbjct: 336 TGHILVSLFGNKGNSKQYEIFKG---TLKPDSTHSNEFDSDVDVGDLQMVKFIW 386
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/413 (38%), Positives = 226/413 (54%), Gaps = 16/413 (3%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY +LGC + + W + RP + P IDTRF+LYT +NP ++ TIE
Sbjct: 4 CYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFLLYTNENPNNFQLITGTEPDTIEA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FIIHGF+D SW +M +++ + N I VDW GS +YTQA N
Sbjct: 64 SNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRHGSRAMYTQAVQNI 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYA-GQAIEGLGRITGLDPAEPY 222
R+VG E A+ + L G + DVH+IGHSLGAHTA A + +GRITGLDPA P
Sbjct: 124 RVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVGRITGLDPAGPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ P RLDP+DA VDVIHTD S I LG+GMS+ GHLDF+PN GKE PGC +
Sbjct: 184 FQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGC--KK 241
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L +GI E V+CNH+R+ + ++ S+ + ++ + C SY F + +CF C
Sbjct: 242 NVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + + +++ TG+ F Y++++ L+ + V
Sbjct: 302 --PAEGCPKMGHYADQFKGKTSAVEQTFFLNTGESGQFTSWRYKVSVTLSGKEK----VN 355
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G++R++L+ N + ++ L+ S + + +VG I KV+F W
Sbjct: 356 GYIRIALYGSNENSKQYEIFKG---SLKPDASHTCAIDVDFNVGKIQKVKFLW 405
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/413 (38%), Positives = 226/413 (54%), Gaps = 16/413 (3%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY +LGC + + W + RP + P IDTRF+LYT +NP ++ TIE
Sbjct: 6 CYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFLLYTNENPNNFQLITGTEPDTIEA 65
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FIIHGF+D SW +M +++ + N I VDW GS +YTQA N
Sbjct: 66 SNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRHGSRAMYTQAVQNI 125
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYA-GQAIEGLGRITGLDPAEPY 222
R+VG E A+ + L G + DVH+IGHSLGAHTA A + +GRITGLDPA P
Sbjct: 126 RVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVGRITGLDPAGPC 185
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIF-LLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ P RLDP+DA VDVIHTD S I LG+GMS+ GHLDF+PN GKE PGC +
Sbjct: 186 FQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGC--KK 243
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L +GI E V+CNH+R+ + ++ S+ + ++ + C SY F + +CF C
Sbjct: 244 NVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPC 303
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + + +++ TG+ F Y++++ L+ + V
Sbjct: 304 --PAEGCPKMGHYADQFKGKTSAVEQTFFLNTGESGNFTSWRYKVSVTLSGKEK----VN 357
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYW 451
G++R++L+ N + ++ L+ S + + +VG I KV+F W
Sbjct: 358 GYIRIALYGSNENSKQYEIFKG---SLKPDASHTCAIDVDFNVGKIQKVKFLW 407
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 351 MGLEAQKTNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQGFMRVSLHSDNG 410
M L AQK G+ Y GK+V + RH +R ++ P + + VS S+NG
Sbjct: 436 MRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVN---PKYVDILEDAGLVVSGISENG 492
Query: 411 VIRNLDLTPNGYEKLEHGTSRSFVVT--HPE 439
++ ++L N + FV T HPE
Sbjct: 493 LVEIIELPSNKF----------FVATQAHPE 513
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 138 HSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGA 197
H W + G + PLY T L + Y +NY KDN PA+ ++G
Sbjct: 194 HGSWE----GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGA--PAEKLIVGFPTYG 247
Query: 198 HTAGYAGQAIEGLGRIT-GLDPAEPY 222
H + + G+G T G PA PY
Sbjct: 248 HNFILSNPSNTGIGAPTSGAGPAGPY 273
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 138 HSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGA 197
H W + G + PLY T L + Y +NY KDN PA+ ++G
Sbjct: 198 HGSWE----GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGA--PAEKLIVGFPTYG 251
Query: 198 HTAGYAGQAIEGLGRIT-GLDPAEPY 222
H + + G+G T G PA PY
Sbjct: 252 HNFILSNPSNTGIGAPTSGAGPAGPY 277
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 42 TRCYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTI 101
T + E + VTR Y ++ +PR +I+ F L T P G +L V + I
Sbjct: 118 TDAFQETPIVEVTRSITKHNYLVMDVEDIPR-IIEEAFFLATSGRP--GPVL-VDVPKDI 173
Query: 102 EKSNFDPKKKTKFIIHGFIDT----PLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYT 157
++ P + + G++ P S ++++ R L+ S V+ V GG L
Sbjct: 174 QQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVR-LISESKKPVLYV--GGGCLNSSD 230
Query: 158 QATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIE 208
+ L G+ +A + L G P D + H LG H YA A+E
Sbjct: 231 ELGRFVELTGIPVASTLMGL----GSYPXDDELSLHMLGMHGTVYANYAVE 277
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 42 TRCYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTI 101
T + E + VTR Y ++ +PR +I+ F L T P G +L V + I
Sbjct: 117 TDAFQETPIVEVTRSITKHNYLVMDVEDIPR-IIEEAFFLATSGRP--GPVL-VDVPKDI 172
Query: 102 EKSNFDPKKKTKFIIHGFIDT----PLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYT 157
++ P + + G++ P S ++++ R L+ S V+ V GG L
Sbjct: 173 QQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVR-LISESKKPVLYV--GGGCLNSSD 229
Query: 158 QATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIE 208
+ L G+ +A + L G P D + H LG H YA A+E
Sbjct: 230 ELGRFVELTGIPVATTLMGL----GSYPXDDELSLHMLGMHGTVYANYAVE 276
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 153 LPLYTQATANTRLVGLELAYFVNYLK-DNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLG 211
L LY N ++ L+ + K D + D+H+ +L + Y G+A+EG
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY-GEALEGFS 282
Query: 212 RITGLDPAEPYFQ 224
+ LDPA P Q
Sbjct: 283 QAAALDPAWPEPQ 295
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 28 SSDVLYIFYIVEN-ETRCYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYT 83
SS ++ +EN ET+C LG +N T ++++ P I P+ V R +L T
Sbjct: 275 SSGIMKTEKTLENCETKCQTPLGAINTTLPFHNI--HPLTIGECPKYVKSDRLVLAT 329
>pdb|1OLQ|A Chain A, The Trichoderma Reesei Cel12a P201c Mutant, Structure At
1.7 A Resolution
pdb|1OLQ|B Chain B, The Trichoderma Reesei Cel12a P201c Mutant, Structure At
1.7 A Resolution
Length = 218
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 151 GSLPLYT-QATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLG 196
G++ +Y+ A NT ++ F NYL+DN G N A +++ + G
Sbjct: 152 GAMQVYSFVAQTNTTNYSGDVKNFFNYLRDNKGYNAAGQYVLSYQFG 198
>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
Length = 507
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 28 SSDVLYIFYIVEN-ETRCYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYT 83
SS ++ +EN ET+C LG +N T ++++ P I P+ V R +L T
Sbjct: 275 SSGIMKTEKTLENCETKCQTPLGAINTTLPFHNI--HPLTIGECPKYVKSDRLVLAT 329
>pdb|1H8V|A Chain A, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|B Chain B, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|C Chain C, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|D Chain D, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|E Chain E, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
pdb|1H8V|F Chain F, The X-Ray Crystal Structure Of The Trichoderma Reesei
Family 12 Endoglucanase 3, Cel12a, At 1.9 A Resolution
Length = 218
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 151 GSLPLYT-QATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLG 196
G++ +Y+ A NT ++ F NYL+DN G N A +++ + G
Sbjct: 152 GAMQVYSFVAQTNTTNYSGDVKNFFNYLRDNKGYNAAGQYVLSYQFG 198
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 464 CFLWCNDHLYVSSIKVTETKDIMARDKRAIETNSKLC 500
C C H Y + K+ TK + ARD + +E +++C
Sbjct: 23 CVKLCTGHEYAA--KIINTKKLSARDHQKLEREARIC 57
>pdb|1OA2|A Chain A, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|B Chain B, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|C Chain C, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|D Chain D, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|E Chain E, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
pdb|1OA2|F Chain F, Comparison Of Family 12 Glycoside Hydrolases And Recruited
Substitutions Important For Thermal Stability
Length = 218
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 151 GSLPLYT-QATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLG 196
G++ +Y+ A NT ++ F NYL+DN G N A +++ + G
Sbjct: 152 GAMQVYSFVAQTNTTNYSGDVKNFFNYLRDNKGYNAAGQYVLSYQFG 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,724,435
Number of Sequences: 62578
Number of extensions: 740030
Number of successful extensions: 1608
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 27
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)