RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy545
(531 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 465 bits (1197), Expect = e-161
Identities = 158/442 (35%), Positives = 234/442 (52%), Gaps = 25/442 (5%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W + RP P ++TRF+LYT KNP ++ ++ TI+
Sbjct: 4 CYTPLGCFSDDKPWAGTLQRPLKSLPWSPEEVNTRFLLYTNKNPDSYQLITARDVATIKS 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT F+IHGF D SW +M +++L+ N I VDW+ G+ YTQA N
Sbjct: 64 SNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNI 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E AY + L NP +VH+IGHSLGAHTAG AG+ +EG +GR+TGLDPAEP
Sbjct: 124 RIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAEPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIFL-LGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ RLDP+DA VDVIHTD S + LG+GMS+ GH+DF+PN GK+ PGC
Sbjct: 184 FQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCK--R 241
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
+ + GI + + +ACNH+++ + ++ SI + ++A+ C SY F + CF C
Sbjct: 242 SSFSTFIDINGIWQGAQDYLACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + + +++ TG+ + YR+++ LA +
Sbjct: 302 PAG--GCPKMGHYADQYKEKTSAVEQTFFLNTGESGDYTSWRYRVSITLAGSGK----AN 355
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDVL 458
G+++V+L NG + ++ L+ +S + V +G I +V+F W +
Sbjct: 356 GYLKVTLRGSNGNSKQYEIFK---GSLQPDSSYTLDVDVNFIIGKIQEVKFVWNKTV--- 409
Query: 459 QPRSLCFLWCNDHLYVSSIKVT 480
L S I V
Sbjct: 410 ------LNLSKPQLGASRITVQ 425
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 454 bits (1170), Expect = e-157
Identities = 174/441 (39%), Positives = 232/441 (52%), Gaps = 25/441 (5%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+++GC + W RP + P I TRF+LYT KNP L + TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF KKT+FIIHGFID +W+ +M + + K + N I VDW GS YTQA N
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNV 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYF 223
R+VG ++A ++ L NY +P+ V +IGHSLGAH AG AG GLGRITGLDP E F
Sbjct: 124 RVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEASF 183
Query: 224 QGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTET 282
QG P RLDPTDAD VDVIHTD I LG+G S+ GHLDF+PN G+E PGC +
Sbjct: 184 QGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCK--KN 241
Query: 283 PLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSCG 342
L + +GI E R VACNH+R+ K ++ESI + + ++ C SY+ F +CF C
Sbjct: 242 ALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCP 301
Query: 343 ENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQG 399
+ GC MG A K KY++ TG F R Y +++ L + G
Sbjct: 302 DQ--GCPQMGHYADKFAVKTSDETQKYFLNTGDSSNFARWRYGVSITL-----SGKRATG 354
Query: 400 FMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDVLQ 459
+V+L G ++ L+ G++ S DVGTI KV+F W +V+
Sbjct: 355 QAKVALFGSKGNTHQFNIFK---GILKPGSTHSNEFDAKLDVGTIEKVKFLWNN--NVVN 409
Query: 460 PRSLCFLWCNDHLYVSSIKVT 480
P + + I V
Sbjct: 410 PTF-------PKVGAAKITVQ 423
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 454 bits (1170), Expect = e-157
Identities = 173/442 (39%), Positives = 241/442 (54%), Gaps = 27/442 (6%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W ++ RP IFP IDTRF+LYT +NP + TI+
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FI+HGFID W+ +M +++ + N I VDW GS YTQA+ NT
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNT 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+A+ V L G +P +VH+IGHSLGAH G AG+ +EG +GRITGLDPAEP
Sbjct: 124 RVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG+P RLDP+DA VDVIHTD I LG+GMS+ GHLDF+PN GKE PGC +
Sbjct: 184 FQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQ--K 241
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + GI E + VACNH+R+ K + SI + ++ + C SY+ F Q CF C
Sbjct: 242 NILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
E GC MG A + + Y+ TG F R Y++++ L+ +
Sbjct: 302 PEE--GCPKMGHYADQFEGKTATVEQTVYLNTGDSGNFTRWRYKVSVTLSGA----KKLS 355
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYD-MDV 457
G++ V+L+ +NG + ++ L+ + +VG I KV+F W +++
Sbjct: 356 GYILVALYGNNGNSKQYEIFK---GSLKPEARHVRDIDVDINVGEIQKVKFLWNNKVINL 412
Query: 458 LQPRSLCFLWCNDHLYVSSIKV 479
+P L S I V
Sbjct: 413 FRPT----------LGASQITV 424
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 451 bits (1160), Expect = e-155
Identities = 173/443 (39%), Positives = 240/443 (54%), Gaps = 29/443 (6%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+ LGC + W ++ RP I P ++TRF+LYT +NP + V + TI+
Sbjct: 4 CYERLGCFSDDSPWAGIVERPLKILPWSPEKVNTRFLLYTNENPDNFQEI-VADPSTIQS 62
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF+ +KT+FIIHGFID SW+ M + + K N I VDW GS Y+QA+ N
Sbjct: 63 SNFNTGRKTRFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWKSGSRTAYSQASQNV 122
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+AY V L+ ++ +P++VH+IGHSLG+H AG AG+ G +GRITGLDPAEP
Sbjct: 123 RIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAEPC 182
Query: 223 FQGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG P RLDP+DA VDVIHTD I LG+GMS+T GHLDF+PN GKE PGC +
Sbjct: 183 FQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQ--K 240
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + +GI + R ACNH+R+ K +T+SI + + C SY F +CF C
Sbjct: 241 NVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPC 300
Query: 342 GENGTGCALMGLEAQK---TNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + G +Y+ TG F R YR+ + L+ V
Sbjct: 301 SSE--GCPQMGHYADRFPGRTKGVGQLFYLNTGDASNFARWRYRVDVTLSGKK-----VT 353
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYD-MDV 457
G + VSL + G R ++ L+ + S +VG + KV+F W + +++
Sbjct: 354 GHVLVSLFGNKGNSRQYEIFQ---GTLKPDNTYSNEFDSDVEVGDLEKVKFIWYNNVINL 410
Query: 458 LQPRSLCFLWCNDHLYVSSIKVT 480
P+ + S I V
Sbjct: 411 TLPK----------VGASKITVE 423
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 446 bits (1148), Expect = e-154
Identities = 164/465 (35%), Positives = 234/465 (50%), Gaps = 54/465 (11%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W RP P I+TRF+LYT +N ++ + TI+
Sbjct: 4 CYSHLGCFSDEKPWAGTSQRPIKSLPSDPKKINTRFLLYTNENQNSYQLITATDIATIKA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF+ +KT+FIIHGF D+ +SW+ +M + + + N I VDW GGS Y+QA+ N
Sbjct: 64 SNFNLNRKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNI 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+AY V L + P +VH+IGHSLGAHTAG AG+ + G +GRITGLDPAEPY
Sbjct: 124 RVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPY 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIFL-LGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQ P RLDP+DA VDVIHTD S I LG+GMS+ GH+DF+PN GK+ PGC
Sbjct: 184 FQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCKTG- 242
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
++CNH R+I+ + SI + ++ + C SY F + CF C
Sbjct: 243 -------------------ISCNHHRSIEYYHSSILNPEGFLGYPCASYDEFQESGCFPC 283
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
GC MG A + + +++ TG F R Y++++ L+ V
Sbjct: 284 PAK--GCPKMGHFADQYPGKTNAVEQTFFLNTGASDNFTRWRYKVSVTLSGKK-----VT 336
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWEYDMDVL 458
G + VSL + G + ++ L+ ++ S DVG + V+F W +V+
Sbjct: 337 GHILVSLFGNKGNSKQYEIFK---GTLKPDSTHSNEFDSDVDVGDLQMVKFIWYN--NVI 391
Query: 459 QPRSLCFLWCNDHLYVSSIKVTETKDIMARDKRAIETNSKLCSPG 503
P + S I V + + CSP
Sbjct: 392 NPTL-------PRVGASKIIV----------ETNVGKQFNFCSPE 419
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 2e-13
Identities = 71/475 (14%), Positives = 134/475 (28%), Gaps = 193/475 (40%)
Query: 63 RPFNI--------FPLPRA------VIDTRFILYTRKNPTEGHMLKVQNERTIEKSNFDP 108
RP + +P A + +F PTEG +E P
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQF-NKILPEPTEG--FAADDE---------P 54
Query: 109 KKK----TKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTR 164
KF+ G++ + + ++L
Sbjct: 55 TTPAELVGKFL--GYVSSLVEPSKVGQFDQVLNLC------------------------- 87
Query: 165 LVGLELAYFV-NYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYF 223
L F YL+ N D+H + L + E + + Y
Sbjct: 88 -----LTEFENCYLEGN------DIHALAAKLLQENDTTLVKTKELI---------KNYI 127
Query: 224 QGM----PPFARLDPTDADLVDVIHTDGSSIFLL--GYGMSETCGHLDFYPNNGKE-QPG 276
PF + +++ L + + + + G G ++ F +E +
Sbjct: 128 TARIMAKRPFDK--KSNSALFRAVGEGNAQLVAIFGGQGNTDDY----F-----EELR-- 174
Query: 277 CDLTETPLPLTLIKEGIEEAGRVL--VACNHVRAIKLFTESIN--------SKCP---YV 323
DL +T L+ + I+ + L + + A K+FT+ +N S P Y+
Sbjct: 175 -DLYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 324 AHR---CP--------SYQHFLQGRCFSCGE-----NG-TGC------------------ 348
CP Y + F+ GE G TG
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 349 -------AL-----MGLEAQKTNHPPGS------KYYITTGKEVPFCRHHYRIT--LDLA 388
A+ +G+ + +P S + + + VP + L ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVP--------SPMLSIS 342
Query: 389 RPPRA--ETWVQGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVT-HPED 440
+ + +V L + V + L NG ++ VV+ P+
Sbjct: 343 NLTQEQVQDYVNKT-NSHLPAGKQV--EISLV-NGA--------KNLVVSGPPQS 385
Score = 70.5 bits (172), Expect = 8e-13
Identities = 52/273 (19%), Positives = 76/273 (27%), Gaps = 105/273 (38%)
Query: 84 RKNPTE---------GHMLKVQNERTIEKSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRE 134
NP G ++ I ++ D K KT+ I I+ +S+ +
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-INEHSTSYTFRSEKG 1724
Query: 135 LLKHSDWNVIVVDWAGGSLPLYTQATANT--RLVGLELAYFVNYLKDNYGLNPADVHMIG 192
LL AT T L +E A F LK GL PAD G
Sbjct: 1725 LLS---------------------ATQFTQPALTLMEKAAF-EDLKSK-GLIPADATFAG 1761
Query: 193 HSLG-----AHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFARLDPTDADLVDVIHTDG 247
HSLG A A M LV+V+ G
Sbjct: 1762 HSLGEYAALASLADV-----------------------MS-IE-------SLVEVVFYRG 1790
Query: 248 SSIFLL---------GYGMSETCGHLDFYPNNGKEQPGCDLTETPLPLTLIKEGI-EEAG 297
++ + YGM N G+ L + E + + G
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAI--------NPGRVAASFSQEA----LQYVVERVGKRTG 1838
Query: 298 RVLVACN------------HVRAIKLFTESINS 318
++ N +RA+ T +N
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Score = 66.2 bits (161), Expect = 2e-11
Identities = 60/416 (14%), Positives = 116/416 (27%), Gaps = 137/416 (32%)
Query: 40 NETRCYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNER 99
N ++EL RD Y Y V D I ++ +
Sbjct: 165 NTDDYFEEL------RDLYQ-TYHVL--------VGD--LIKFSAE-------------- 193
Query: 100 TIEKSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDW--NVIVVDWAGGSLPLYT 157
T+ + K G + W L++ + + S PL
Sbjct: 194 TLSELIRTTLDAEKVFTQGL---NILEW--------LENPSNTPDKDYLLSIPISCPL-- 240
Query: 158 QATANTRLVGL-ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL 216
+G+ +LA++V K G P ++ H Q + +T +
Sbjct: 241 --------IGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGH-----SQGL-----VTAV 281
Query: 217 DPAEPYFQGMPPFARLDPTDADLVDVIHTDGSSIFLLGYGMSETCGHLDFYP-------N 269
AE + + + +F +G E + P
Sbjct: 282 AIAET------------DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 270 NGKEQPGCDLTETPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPS 329
N + P L+ + L +++ + + L A V I L +N
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISL----VN-----------G 373
Query: 330 YQHF--------LQGRCFSCGENGTGCALMGLEAQKTNH----PPGSKYY--ITTGKEVP 375
++ L G + + A GL+ + S + + P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRK---AKAPSGLDQSRIPFSERKLKFSNRFLPVA----SP 426
Query: 376 FCRH-HY------RITLDLARPPRAETWVQGFMRVSLHS--DNGVIRNLD--LTPN 420
F H H I DL + ++ +++ ++ D +R L ++
Sbjct: 427 F--HSHLLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 38.5 bits (89), Expect = 0.006
Identities = 28/204 (13%), Positives = 51/204 (25%), Gaps = 72/204 (35%)
Query: 175 NYLKDNYGLNPADVHMIG-HSLGAHTAGYAGQAI-EGLGRITGLDPAEPYFQGMPPFARL 232
N+ KD YG + D+ + +L H G G+ I E + + + F +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 233 DPTDADLVDVIHTDGSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTE-T-PLPLTL-- 288
+ F G T+ T P +
Sbjct: 1711 NEHSTSYT-------------------------FRSEKGL----LSATQFTQPALTLMEK 1741
Query: 289 -IKEGIEEAGRV----------------LVACNHV----RAIKLFTESINSKCPYVAHRC 327
E ++ G + L + V +++ V +R
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-----------VFYRG 1790
Query: 328 PSYQHFLQGRCFSCGENGTGCALM 351
+ Q + E G M
Sbjct: 1791 MTMQVAVPR-----DELGRSNYGM 1809
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 60.9 bits (147), Expect = 6e-11
Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 15/132 (11%)
Query: 110 KKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLE 169
K +IIHG+ + + W +++ LL +++ P
Sbjct: 4 TKQVYIIHGYRASSTNHWFPWLKKRLLAD-GVQADILNMPNPLQP--------------R 48
Query: 170 LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPF 229
L +++ L + +++ HSLG + ++ + G+ + + +P
Sbjct: 49 LEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTL 108
Query: 230 ARLDPTDADLVD 241
LD D
Sbjct: 109 QMLDEFTQGSFD 120
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 48.6 bits (115), Expect = 2e-06
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVN 175
+ G T S+ L + + L +T++ + +
Sbjct: 71 VPGTGTTGPQSFDSNWIP-LSAQLGYTPCWISPPPFML-------NDTQVNTEYMVNAIT 122
Query: 176 YLKDNYGLNPADVHMIGHSLGAHTAGYA 203
L G N + ++ S G A +
Sbjct: 123 TLYAGSGNNK--LPVLTWSQGGLVAQWG 148
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 47.3 bits (112), Expect = 5e-06
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 12/151 (7%)
Query: 106 FDPKKKTKFIIHGF-IDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANT 163
+ G + ++ + +L ++ +D G Y+ +
Sbjct: 37 HREGNPCFVFLSGAGFFSTADNF-ANIIDKLPDS--IGILTIDAPNSG----YSPVSNQA 89
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPY 222
+ + + + +++ + HS+G A Q+ + GL+P
Sbjct: 90 NVGLRDWVNAILMIFEHFKFQSY--LLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVM 147
Query: 223 FQGMPPFARLDPTDADLVDVIHTDGSSIFLL 253
+ L P A + T + L
Sbjct: 148 IYRAGFSSDLYPQLALRRQKLKTAADRLNYL 178
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 47.5 bits (112), Expect = 5e-06
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVN 175
+ G T S+ L + + L +T++ + +
Sbjct: 37 VPGTGTTGPQSFDSNWIP-LSTQLGYTPCWISPPPFML-------NDTQVNTEYMVNAIT 88
Query: 176 YLKDNYGLNPADVHMIGHSLGAHTAGYA 203
L G N + ++ S G A +
Sbjct: 89 ALYAGSGNNK--LPVLTWSQGGLVAQWG 114
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 43.6 bits (103), Expect = 4e-05
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVN 175
+HG ++ ++ L+ W+ + + T G L+ FV
Sbjct: 9 VHGIGGAS-FNFAG-IKSYLVSQ-GWSRDKLY-----AVDFWDKTGTNYNNGPVLSRFVQ 60
Query: 176 YLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG---LGRITGLDPAEPYFQG--MPPFA 230
+ D G V ++ HS+G Y + ++G + + L A +
Sbjct: 61 KVLDETGAKK--VDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGA---NRLTTGKALP 115
Query: 231 RLDPTDADLVDVIHTD 246
DP L I++
Sbjct: 116 GTDPNQKILYTSIYSS 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 1e-04
Identities = 70/523 (13%), Positives = 124/523 (23%), Gaps = 186/523 (35%)
Query: 2 EKKDKER-----EKERDREEEKGE--------REKEMRKSSDVLYIF----YIVENETRC 44
E++ ++RDR + R + K L ++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-----I 155
Query: 45 YDELGC------LNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNE 98
LG L+V + F IF ++ N E + +Q
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF----------WLNLKNCNSPETVLEMLQKL 205
Query: 99 RTIEKSNFDPKKKTKFIIHGFIDTPLS-SWVKEMRRELLKH-------------SDWNVI 144
N+ + + L ++ R LLK +
Sbjct: 206 LYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 145 -----------------VVDWAGGSLPLYTQATANTRLVGLE----LAYFVNYLKDNY-- 181
V D+ + T + + + L + + YL
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 182 ------GLNPADVHMIGHSLGAHTA---GYAGQAIEGLGRI-----TGLDPAE--PYFQG 225
NP + +I S+ A + + L I L+PAE F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 226 M---P-----PFARL-----DPTDADLVDVI-----------HTDGSSIFLLGYGMSETC 261
+ P P L D +D++ V+ S+I + +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 262 G-------H---LDFY------PNNGKEQPGCD----------------------LTETP 283
H +D Y ++ P D
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 284 LPLTLIKEGIEEAGRVLVAC----NHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCF 339
L +++ I A N ++ +K + I P + FL
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---- 553
Query: 340 SCGENGTGC--------ALMGLEAQKTNHPPGSKYYITTGKEV 374
EN ALM + K+V
Sbjct: 554 KIEENLICSKYTDLLRIALM---------AEDEAIFEEAHKQV 587
Score = 37.9 bits (87), Expect = 0.008
Identities = 53/458 (11%), Positives = 113/458 (24%), Gaps = 160/458 (34%)
Query: 128 VKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAY-------FVN-YLKD 179
V++M + +L + + I+ + RL L+ FV L+
Sbjct: 38 VQDMPKSILSKEEIDHII------MSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 180 NYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFARLDPTDADL 239
NY + + T Y Q + + FA+ + +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQR-------------DRLYNDNQVFAKYNVSRLQP 136
Query: 240 VDVIHT------DGSSIFLLGYGM---------SETCGHLD---------FYPNNGK--- 272
+ ++ + G+ + C F+ N
Sbjct: 137 YLKLRQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 273 ---------------EQPGCDLTETPLPLTLIKEGIEEAGRVLVA------C-------N 304
+ ++ + L I+ R L+ C
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 305 HVRAIKLFTESINSKCP--------------YVAHRC-PSYQHFLQGRCFSCGENGTGCA 349
+ +A F N C A S H + E
Sbjct: 255 NAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDE------ 302
Query: 350 LMGLEAQKTNHPPGSKYYITTGKEVP--FCRHHYRITLDLARPPRAETWVQGFMRVSL-H 406
+ L + + P +++P + PR + + +R L
Sbjct: 303 VKSLLLKYLDCRP---------QDLPREVLTTN----------PRRLSIIAESIRDGLAT 343
Query: 407 SDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVGTINKVEFYWE---YDMDVLQPRS- 462
DN ++++ +KL S V P + + + + P
Sbjct: 344 WDN--WKHVN-----CDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTIL 391
Query: 463 LCFLWCNDHLYVSSIKVTETKDIMA--RDKRAIETNSK 498
L +W + + ++ ++ +E K
Sbjct: 392 LSLIWFD-------VIKSDVMVVVNKLHKYSLVEKQPK 422
Score = 29.8 bits (66), Expect = 2.9
Identities = 48/504 (9%), Positives = 112/504 (22%), Gaps = 152/504 (30%)
Query: 5 DKEREKERDREEEK--GEREKEMRKSSDVLYIFYIVENE-TRCYDEL--GCLNVTRDWYH 59
D + E + ++ L +F+ + ++ + L + +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSG----TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93
Query: 60 LIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEKSNFDPKKKTKFIIHGF 119
+ P +++ +I + + + N ++
Sbjct: 94 -LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---------------- 136
Query: 120 IDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGS----LPLYTQATANTRLVGLELAYFVN 175
++R+ LL+ +++D GS + + V ++ + +
Sbjct: 137 --------YLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIF 185
Query: 176 YLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRIT-GLDPAEPY---FQGMPPFAR 231
+L +P V + L + I + + P+
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 232 ----LD----PTDADLVDV-----IHTDGSSIFLLGYGMSETCGHLDFYPNNGKEQPGCD 278
L + ++ + T + DF
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-------------DFLSAATTTHI--S 290
Query: 279 LTETPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRC 338
L + LT +E +L+ R L P
Sbjct: 291 LDHHSMTLTP-----DEVKSLLLKYLDCRPQDL---------PREV-------------- 322
Query: 339 FSCGENGTGCALMGLEAQKTNHPPGSKYYITTGKEVPFCRHHYRITLDLARPPRAETWVQ 398
N +++ + + +H L
Sbjct: 323 --LTTNPRRLSIIA--ESIRDGLATWDNW----------KHVNCDKLTTI---------- 358
Query: 399 GFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTHPEDVG-TINKVEFYW------ 451
+ SL+ L P Y K+ V P + W
Sbjct: 359 --IESSLNV---------LEPAEYRKM----FDRLSV-FPPSAHIPTILLSLIWFDVIKS 402
Query: 452 --EYDMDVLQPRSLCFLWCNDHLY 473
++ L SL +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTI 426
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 42.7 bits (101), Expect = 1e-04
Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 13/142 (9%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLVGLELAYF 173
++HG + + + W + L + + +D G G+ E
Sbjct: 21 LVHGLLGS-GADWQPVLSH--LARTQCAALTLDLPGHGT----NPERHCDNFA--EAVEM 71
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLD--PAEPYFQGMPPFA 230
+ + + V ++G+SLG Q + G Q A
Sbjct: 72 IEQTVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKA 131
Query: 231 RLDPTDADLVDVIHTDGSSIFL 252
D L
Sbjct: 132 ARWQHDQQWAQRFSQQPIEHVL 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.003
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 2 EKKDKEREKERDREEEKGEREKEMR-----KSSDVLYIFYIVENET 42
E K RE++R R +E K M K+ L + ++E
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 31.3 bits (70), Expect = 0.51
Identities = 3/25 (12%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 2 EKKDKEREKERDREEE-KGEREKEM 25
E+ +K + R ++ + + ++
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDADI 153
Score = 30.9 bits (69), Expect = 0.66
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 15/45 (33%)
Query: 1 MEKKDKEREKERD---------------REEEKGEREKEMRKSSD 30
+++ D + R+ E+ E+ K + +D
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 37.6 bits (87), Expect = 0.004
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWA--GGSLPLYTQATANTRLVGLELAYF 173
+HG + +W L + + + +D G S A G LA
Sbjct: 38 LHGIRFS-SETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAV 96
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPA 219
V+ L L P +I SL + + L + P
Sbjct: 97 VDAL----ELGPP--VVISPSLSGMYSLPFLTAPGSQLPGFVPVAPI 137
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 37.7 bits (87), Expect = 0.006
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 116 IHGFIDTPLSSWVKEMR-----RELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLEL 170
+HG T + + +E L+ V V + L + Q+ G +L
Sbjct: 14 VHGLTGT--DKYAGVLEYWYGIQEDLQQRGATVYVAN-----LSGF-QSDDGPNGRGEQL 65
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYA 203
+V + G V+++GHS G T+ Y
Sbjct: 66 LAYVKTVLAATGATK--VNLVGHSQGGLTSRYV 96
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 37.0 bits (85), Expect = 0.006
Identities = 13/141 (9%), Positives = 33/141 (23%), Gaps = 15/141 (10%)
Query: 114 FIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
+G D W +++EL K + + + + +
Sbjct: 10 VPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITA--------------RESIW 55
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFARLD 233
+ +++ + +IGHS GA A + + +
Sbjct: 56 LPFMETELHCDE-KTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYF 114
Query: 234 PTDADLVDVIHTDGSSIFLLG 254
+ +
Sbjct: 115 TRPWQWEKIKANCPYIVQFGS 135
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 37.2 bits (85), Expect = 0.011
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 18/113 (15%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIV---------------VDWAGGSLPLYTQAT 160
IHG D S+ + + V + S Q
Sbjct: 46 IHGNGDNA-ISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQYN 104
Query: 161 ANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRI 213
++ + F++ +K G + V ++ HS+G + Q +
Sbjct: 105 YHSSTKYAIIKTFIDKVKAYTGKSQ--VDIVAHSMGVSMSLATLQYYNNWTSV 155
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 36.6 bits (85), Expect = 0.014
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 14/132 (10%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWA--GGSLPLYTQATANTRLVGLELAYF 173
+HG S L + I +D G S P+ + N L
Sbjct: 27 LHGLSLD-KQST-CLFFEPLSNVGQYQRIYLDLPGMGNSDPISPSTSDN------VLETL 78
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPA-EPYFQGMPPFAR 231
+ +++ G + GHS G + A A + + P
Sbjct: 79 IEAIEEIIGARRF--ILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKH 136
Query: 232 LDPTDADLVDVI 243
++ + D+ V
Sbjct: 137 INILEEDINPVE 148
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 36.0 bits (83), Expect = 0.020
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 18/123 (14%)
Query: 114 FIIHGFIDTPLSSWVKEMRR--ELLKHSDWNVIVVDWAG----GSLPLYTQATANTRLVG 167
++H + +P +M L+ S + V V ++G L + T+ +
Sbjct: 26 VLLHAYTGSPN-----DMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIWWAE 80
Query: 168 LELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAG-YAGQAIEGLGRITGLDPAEPYFQGM 226
A ++ Y V + G SLG A P P +
Sbjct: 81 SSAAV--AHMTAKYA----KVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHL 134
Query: 227 PPF 229
P
Sbjct: 135 VPG 137
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 35.4 bits (82), Expect = 0.027
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 29/132 (21%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-----GSLPLYTQATANTRLVGLEL 170
+HG + + + L+ +N I++D G G P + +
Sbjct: 22 VHGS---GCNLKIFGELEKYLED--YNCILLDLKGHGESKGQCPSTVYGYIDN------V 70
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPYFQGMPPF 229
A F+ + + ++ +IG+S+G G A + + + ++ L
Sbjct: 71 ANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGG---------- 118
Query: 230 ARLDPTDADLVD 241
AR D D D ++
Sbjct: 119 ARFDKLDKDFME 130
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 35.4 bits (82), Expect = 0.036
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 22/124 (17%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-------GSLPLYTQATANTRLVGL 168
IHG ++ +W + L + V+ D G + Y+ T
Sbjct: 32 IHGILEQG-LAWQEVALP--LAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLT-------- 80
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPYFQGMP 227
++ + P + +GHS+GA A A + + + ++ P +
Sbjct: 81 -FLAQIDRVIQELPDQPLLL--VGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKK 137
Query: 228 PFAR 231
A
Sbjct: 138 ESAV 141
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 35.2 bits (80), Expect = 0.044
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 114 FIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
++HG D+ S+ + H V V+D G + R + ++ F
Sbjct: 40 IVVHGLFDSS-YSFRHLLEYINETHPGTVVTVLDLFDG--------RESLRPLWEQVQGF 90
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQ 205
+ P VH+I +S G
Sbjct: 91 REAVVPIMAKAPQGVHLICYSQGGLVCRALLS 122
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 34.7 bits (80), Expect = 0.056
Identities = 20/134 (14%), Positives = 30/134 (22%), Gaps = 28/134 (20%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKH--SDWNVIVVDWAG-GSLPLYTQATANTRLVGLE-LA 171
+ G + +L DW V+ + G G + +
Sbjct: 35 LPGLTRN-ARDF-----EDLATRLAGDWRVLCPEMRGRGD----SDYAKDPMTYQPMQYL 84
Query: 172 YFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQA---IEGL--------GRITGLDPA 219
+ L G+ IG SLG A I GL+
Sbjct: 85 QDLEALLAQEGIERFVA--IGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERI 142
Query: 220 EPYFQGMPPFARLD 233
Y F
Sbjct: 143 RGYVGQGRNFETWM 156
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 34.8 bits (80), Expect = 0.063
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 114 FIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLVGLELAY 172
++HG + SW ++ ++ +D G T+ L +A
Sbjct: 42 LLLHGGGHS-ALSW-AVFTAAIISRVQCRIVALDLRSHGE----TKVKNPEDLSAETMAK 95
Query: 173 -FVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQ-AIEGLGRITGLDPAEP 221
N ++ YG P + +IGHS+G A A + L + +D E
Sbjct: 96 DVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEG 147
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 34.4 bits (79), Expect = 0.066
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 19/141 (13%)
Query: 114 FIIHGFIDTPLSSWVKEMRR--ELLKHSDWNVIVVDWAG--GSLPLYTQATANTRLVGLE 169
++HGF TP MR E + + V + G + T + + +E
Sbjct: 44 LLVHGFTGTPH-----SMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVE 98
Query: 170 LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPF 229
Y +LK + + G S+G Y + + I ++ A +P
Sbjct: 99 EGY--GWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAA----VDIPAI 148
Query: 230 ARLDPTDADLVDVIHTDGSSI 250
A +L + + GS +
Sbjct: 149 AAGMTGGGELPRYLDSIGSDL 169
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 34.4 bits (79), Expect = 0.068
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 9/164 (5%)
Query: 107 DPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWA--GGSLPLYTQATANTR 164
I HGF +S ++E+ L + + D+ G S + T
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDE-NIASVRFDFNGHGDSDGKFENMTVLNE 101
Query: 165 LVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPYF 223
+ +NY+K + + ++++GH+ G A AG + + ++ L PA
Sbjct: 102 IEDANAI--LNYVKTDPHVRN--IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPA-ATL 156
Query: 224 QGMPPFARLDPTDADLVDVIHTDGSSIFLLGYGMSETCGHLDFY 267
+G + + LG L Y
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIY 200
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 34.4 bits (79), Expect = 0.076
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 116 IHGFIDTPLSSWV-KEMRRELLKHSDWNVIVVDWAG-G--SLPLYTQATANTRLVGLELA 171
+HG + + L + VI VD G S P + Q + LA
Sbjct: 52 MHGK---NFCAGTWERTIDVLADA-GYRVIAVDQVGFCKSSKPAHYQYSFQQ------LA 101
Query: 172 YFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPA--EPYFQGMPP 228
+ L + G+ +IGHS+G A YA + R+ ++P E + P
Sbjct: 102 ANTHALLERLGVA--RASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVP 159
Query: 229 FARLD 233
+ +D
Sbjct: 160 WRSVD 164
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 34.2 bits (79), Expect = 0.077
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 116 IHGFID--TPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
+HG S++ + + + + VI+ D P + + + +
Sbjct: 39 LHGGGPGAGGWSNYYRNVGPFVDAG--YRVILKD-----SPGFNK-SDAVVMDEQRGLVN 90
Query: 174 VNYLK---DNYGLNPADVHMIGHSLGAHTA 200
+K D ++ A H++G+++G TA
Sbjct: 91 ARAVKGLMDALDIDRA--HLVGNAMGGATA 118
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 34.0 bits (78), Expect = 0.094
Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 18/148 (12%)
Query: 114 FIIHGFIDTPLSSWVKEMRR--ELLKHSDWNVIVVDWAG--GSLPLYTQATANTRLVGLE 169
++HGF ++R L+ + + G + +
Sbjct: 20 LLLHGFTGNSA-----DVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVM 74
Query: 170 LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPF 229
Y +LK+ + + G SLG + G I G+
Sbjct: 75 NGY--EFLKN---KGYEKIAVAGLSLGGVFSLKLGY----TVPIEGIVTMCAPMYIKSEE 125
Query: 230 ARLDPTDADLVDVIHTDGSSIFLLGYGM 257
+ + +G S + M
Sbjct: 126 TMYEGVLEYAREYKKREGKSEEQIEQEM 153
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 33.8 bits (78), Expect = 0.11
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 116 IHGFIDTPLSS--WVKEMRRELLKHSDWNVIVVDW--AGGS-LPLYTQATANTRLVGLE- 169
HGF W + M EL K + VIV D+ +G S L ++ ++ LE
Sbjct: 34 AHGF---GCDQNMW-RFMLPELEKQ--FTVIVFDYVGSGQSDLESFSTKRYSS----LEG 83
Query: 170 LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL---DPAEPYF 223
A V + L+ +V +IGHS+ + AG A + RI+ + P+ +
Sbjct: 84 YAKDVEEILV--ALDLVNVSIIGHSVSSIIAGIA--STHVGDRISDITMICPSPCFM 136
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 34.2 bits (78), Expect = 0.11
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 107 DPKKKTKFIIHGFIDTPLSSWVKEMR----RELLKHSDWNVIVVDWAGGSLPLYTQATAN 162
D + G S + R+ L D ++ VD T +
Sbjct: 190 DKPHPVVIVSAGL-----DSL-QTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLTED 243
Query: 163 TRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA 200
+ +N L ++ V +IG G +
Sbjct: 244 YSRL---HQAVLNELFSIPYVDHHRVGLIGFRFGGNAM 278
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 33.3 bits (76), Expect = 0.12
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 107 DPKKKTKFIIHGFIDTPLSS--WVKEMRRELLKHSDWNVIVVDWAG-G--SLPLYTQATA 161
D +++ + HG+ +S W K +NV D+ G G +
Sbjct: 24 DSNRRSIALFHGY---SFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDR 80
Query: 162 NTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA 200
A F+ G+ + ++G S+G
Sbjct: 81 GDLK---HAAEFIRDYLKANGVARS--VIMGASMGGGMV 114
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 33.4 bits (76), Expect = 0.13
Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 21/157 (13%)
Query: 101 IEKSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQAT 160
+ + ++K ++HG W K + LL+ + V VD +
Sbjct: 1 MHSAANAKQQKHFVLVHGGCLGA-WIWYKL--KPLLESAGHKVTAVDLSA----AGINPR 53
Query: 161 ANTRLVGLE--LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL-- 216
+ + + V ++GHS G + G A + +I+
Sbjct: 54 RLDEIHTFRDYSEPLMEVMASIPPDEK--VVLLGHSFGGMSLGLAMETYP--EKISVAVF 109
Query: 217 ------DPAEPYFQGMPPFARLDPTDADLVDVIHTDG 247
DP + P D L T G
Sbjct: 110 MSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYG 146
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 33.8 bits (77), Expect = 0.13
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 17/124 (13%)
Query: 91 HMLKVQNERTIEKSNFDPKKKTKF------IIHGFIDTPLSSWVKEMRRELLKHSDWNVI 144
H+L+V N + + PK+ F I GF + L + ++V
Sbjct: 10 HVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARR--MDHFAGLAEYLSTN-GFHVF 66
Query: 145 VVDW---AGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAG 201
D G S + T T L ++L+ ++ +I SL A A
Sbjct: 67 RYDSLHHVGLSSGSIDEFTMTTGKNSLCTV--YHWLQTK---GTQNIGLIAASLSARVAY 121
Query: 202 YAGQ 205
Sbjct: 122 EVIS 125
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 33.4 bits (77), Expect = 0.13
Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 22/132 (16%)
Query: 116 IHGFIDTPLSSWV-KEMRRELLKHSDWNVIVVDW--AGGS-LPLYTQATANTRLVGLE-L 170
GF V + + VI+ D+ +G S L Y T L+
Sbjct: 26 APGF---GCDQSVWNAVAPAFEED--HRVILFDYVGSGHSDLRAYDLNRYQT----LDGY 76
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL---DPAEPYFQGMP 227
A V + + L+ + +GHS+GA A +I + L P+ Y P
Sbjct: 77 AQDVLDVCE--ALDLKETVFVGHSVGALIGMLA--SIRRPELFSHLVMVGPSPCYLNDPP 132
Query: 228 -PFARLDPTDAD 238
+ +
Sbjct: 133 EYYGGFEEEQLL 144
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 33.4 bits (75), Expect = 0.18
Identities = 23/169 (13%), Positives = 57/169 (33%), Gaps = 22/169 (13%)
Query: 115 IIHGFIDTPLS-SWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLE---- 169
I + K + L ++ +NV +D+ +P + + +
Sbjct: 68 TISWNGVHYTIPDYRKSIVLYLARN-GFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTW 126
Query: 170 ---LAYFVNYLKDNYGLNPADVHMIGHSLGA-----HTAGYAGQAIEGLGRITGLDPAEP 221
+ V+++K + G +++ G S G +++ Y I+GL + G P
Sbjct: 127 ISDIKEVVSFIKRDSGQER--IYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG----P 180
Query: 222 YFQGMPPFARLDPTDADLVDVIHTDGSSIFLLGYGMSETCGHLDFYPNN 270
G+ P + + + ++ + G + G + +
Sbjct: 181 TKHGIRP--KFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPD 227
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 32.9 bits (74), Expect = 0.20
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 23/106 (21%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWN----VIVVDWAG-----GSLP----------LY 156
IHG SS +M +L+ + + V+ G G L +
Sbjct: 9 IHGSGGN-ASSL-DKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGF 66
Query: 157 TQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGY 202
Q A L + LK YG + +GHS G Y
Sbjct: 67 EQNQATPDDWSKWLKIAMEDLKSRYGFTQ--MDGVGHSNGGLALTY 110
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 32.7 bits (75), Expect = 0.24
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHS--DWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
+HG + W R + + VI++D P + + + + G
Sbjct: 42 LHGSGPG-ATGW-ANFSRNIDPLVEAGYRVILLD-----CPGWGK-SDSVVNSGSRSDLN 93
Query: 174 VNYLK---DNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGL---DPAEPYFQGM 226
LK D + A +H++G+S+G H++ + + E R+ L
Sbjct: 94 ARILKSVVDQLDI--AKIHLLGNSMGGHSSVAFTLKWPE---RVGKLVLMGGGTGGMSLF 148
Query: 227 PPF 229
P
Sbjct: 149 TPM 151
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 32.3 bits (73), Expect = 0.27
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 20/134 (14%)
Query: 114 FIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
++ G D+ W + + + + +L +
Sbjct: 21 VLVPGLRDSDDEHW-----QSHWERRFPHWQRIRQREWYQA--------------DLDRW 61
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTAG-YAGQAIEGLGRITGLDPAEPYFQGMPPFARL 232
V ++ + V +IGHS GA A Q EG+ + + PAEP + +
Sbjct: 62 VLAIRRELSVCTQPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEIDDRIQA 121
Query: 233 DPTDADLVDVIHTD 246
P + +
Sbjct: 122 SPLSVPTLTFASHN 135
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 32.2 bits (73), Expect = 0.31
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEP 221
A F N +GLN +G+S GA+ G + L P
Sbjct: 94 AFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPV 147
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 32.2 bits (74), Expect = 0.32
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 31/131 (23%)
Query: 116 IHGFIDTPLSSWV-KEMRRELLKHSDWNVIVVDW--AGGS--LPLYTQATANTRLVGLEL 170
+HG+ L++ V + + EL H + + +VD G S + A + L
Sbjct: 19 LHGW---GLNAEVWRCIDEELSSH--FTLHLVDLPGFGRSRGFGALSLAD----MAEAVL 69
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL---DPAEPYFQGMP 227
P +G SLG A A+ R+ L + P F
Sbjct: 70 Q-----------QAPDKAIWLGWSLGGLVASQI--ALTHPERVRALVTVASS-PCFSARD 115
Query: 228 PFARLDPTDAD 238
+ + P
Sbjct: 116 EWPGIKPDVLA 126
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 32.3 bits (74), Expect = 0.33
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 40/157 (25%)
Query: 116 IHGF--IDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLVGLELAY 172
IHG + ++W + L K + VI D G G T
Sbjct: 31 IHGSGPGVSAYANWRLTIP-ALSKF--YRVIAPDMVGFG-------FTDRPENYNYSKDS 80
Query: 173 FVNYLK---DNYGLNPADVHMIGHSLGAHTA--------------------GYAGQAIEG 209
+V+++ D + A H++G++ G A G EG
Sbjct: 81 WVDHIIGIMDALEIEKA--HIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEG 138
Query: 210 LGRITGLDPAEPYFQGMPPFARLDPT--DADLVDVIH 244
L + G P+ + + D + +L + +
Sbjct: 139 LNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRY 175
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; 1.50A {Mycobacterium tuberculosis} SCOP:
c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Length = 280
Score = 32.1 bits (73), Expect = 0.35
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 139 SDWNVIVVDWAGGSLPLYTQATANTRLVGLELAY----FV-----NYLKDNYGLNPADVH 189
+ V+ GG YT ++ G Y F+ +L+ N G++P
Sbjct: 58 YQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 117
Query: 190 MIGHSLGAHTA 200
+G S+ +A
Sbjct: 118 AVGLSMSGGSA 128
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 32.3 bits (74), Expect = 0.37
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 12/50 (24%)
Query: 156 YTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLG----AHTAG 201
Q ++ LA D G P +GHSLG AG
Sbjct: 146 VAQP----AIIADSLAGI--RWLDRLGARPV--GALGHSLGELAALSWAG 187
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription,
simocyclinone regulator, TETR-family; 1.95A
{Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Length = 267
Score = 31.8 bits (72), Expect = 0.46
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 124 LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGL 183
L+ E R L+H + P++ + R L + L
Sbjct: 100 LTLAANEKRALWLRHPW----LATAWRNGHPVWGPNSL--RQQEFVLGTL-----GVFDL 148
Query: 184 NPADVHMIGHSLGAHTAGYAGQAIEGL--GRITGLDPAEPYFQGMPPFARLDPTDA 237
++ + + + + L R T +D E + P +L +
Sbjct: 149 QVDELLSLIGLYNGYVESFVRNEVGWLEEARRTKVDMREWMRRSGPYAQQLVDSGE 204
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 31.9 bits (73), Expect = 0.47
Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 23/124 (18%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG--GS----LPLYTQATANTRLVGLE 169
+HG + + + W + + + VD G T+ L+ +
Sbjct: 73 LHGALFS-STMWYPNIA-DWSSK--YRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDV- 127
Query: 170 LAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPYFQGMPP 228
L HMIG SLG + + E + L PA F
Sbjct: 128 FD----------NLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPA-ETFLPFHH 176
Query: 229 FARL 232
Sbjct: 177 DFYK 180
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 31.5 bits (72), Expect = 0.54
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 27/143 (18%)
Query: 114 FIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLVGLELAY 172
++ G + + + + + L K + V+ D G G +++ +
Sbjct: 27 LLLPGMLGSGETDF-GPQLKNLNKK-LFTVVAWDPRGYG----HSRPPDR----DFPADF 76
Query: 173 FVNYLKDNYG----LNPADVHMIGHSLGAHTA-GYAGQA---IEGL------GRITGLDP 218
F KD L V ++G S G TA A + I + +T D
Sbjct: 77 FERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
Query: 219 AEPYFQGMPPFARLDPTDADLVD 241
++G+ ++ ++
Sbjct: 137 M--IYEGIRDVSKWSERTRKPLE 157
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 31.5 bits (71), Expect = 0.55
Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 29/183 (15%)
Query: 100 TIEKSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG------GSL 153
++EKS KK ++H W K L++ S NV +D +L
Sbjct: 2 SMEKSMSPFVKKHFVLVHAAFHGA-WCWYKI--VALMRSSGHNVTALDLGASGINPKQAL 58
Query: 154 PLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQA------- 206
+ + + L+ F+ L N + ++GH+LG A +
Sbjct: 59 QIPNFSDYLSPLME-----FMASLPAN-----EKIILVGHALGGLAISKAMETFPEKISV 108
Query: 207 ---IEGLGRITGLDPAEPYFQGMPPFARLDPTDADLVDVIHTDGSSIFLLGYGMSETCGH 263
+ GL +D + + +++ ++ H
Sbjct: 109 AVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYH 168
Query: 264 LDF 266
L
Sbjct: 169 LSP 171
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 31.6 bits (72), Expect = 0.57
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 17/123 (13%)
Query: 116 IHGFIDTPLSSWV--KEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF 173
IHG S + + L +H + VI +D + + + +
Sbjct: 42 IHGG-GAGAESEGNWRNVIPILARH--YRVIAMD-----MLGFGKTAK--PDIEYTQDRR 91
Query: 174 VNYLK---DNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPAEPYFQGMPPF 229
+ +L + V ++G+S+G T G + E + + + A +
Sbjct: 92 IRHLHDFIKAMNFDG-KVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL 150
Query: 230 ARL 232
+
Sbjct: 151 RPI 153
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 31.3 bits (71), Expect = 0.58
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 174 VNYLKDN---YGLNPADVHMIGHSLGAHTAGYAG 204
+ + N + +NP V ++G S G H A + G
Sbjct: 104 FSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYG 137
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Length = 273
Score = 31.4 bits (71), Expect = 0.61
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 126 SWVKEMRRELLKHSDWNVIVVDWAG--GSLPLYTQATANT---RLVGLELAYFVNYLKDN 180
SW +E E L++ +VVD G P T + R G +F ++
Sbjct: 160 SWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWFEAEGEER 219
Query: 181 Y 181
Y
Sbjct: 220 Y 220
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 31.6 bits (71), Expect = 0.69
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPA 219
++ + +PA +IGHS+G A + ++P
Sbjct: 120 DVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPV 171
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 31.1 bits (71), Expect = 0.74
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSD-WNVIVVDWAGGSLPLYTQATANTRLVGLELAYFV 174
+HG +SW R + + ++V+ VD P Y + Y
Sbjct: 42 LHGG-GPGAASW-TNFSRNIAVLARHFHVLAVD-----QPGYGHSDKRAEHGQF-NRYAA 93
Query: 175 NYLK---DNYGLNPADVHMIGHSLGAHTA 200
LK D GL ++G++LG TA
Sbjct: 94 MALKGLFDQLGLGRV--PLVGNALGGGTA 120
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability;
HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1
PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Length = 131
Score = 30.2 bits (68), Expect = 0.76
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 207 IEGL-GRITGLDPAEPYFQGMPPFARLDPTDADLVDVI 243
+ GL G+I Y M FA+L D ++ V+
Sbjct: 51 LYGLQGQIEVKGM--KYNGVMSSFAQLK--DEEIAAVL 84
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 31.0 bits (70), Expect = 0.77
Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 13/117 (11%)
Query: 124 LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGL 183
+ + + H + L T R+ G+
Sbjct: 91 VRAVALGLWDATEAHPW----LATQLATQLSRTPWGTVAPRIFESLGRQV-----QAMGV 141
Query: 184 NPADVHMIGHSLGAHTAGYAGQAIEGLGRI----TGLDPAEPYFQGMPPFARLDPTD 236
A +L + G AGQ +D E + LDP
Sbjct: 142 PEAHWFTASSALMHYILGAAGQNAANSASAGPVGADVDRDEFLDTVSTAWEGLDPDA 198
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 31.3 bits (71), Expect = 0.78
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 183 LNPADVHMIGHSLGAHTA-GYAGQA---IEGL 210
L P ++G SLG TA A A + L
Sbjct: 143 LAPGAEFVVGMSLGGLTAIRLAAMAPDLVGEL 174
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 31.0 bits (70), Expect = 0.79
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDW------NVIVVDWAGGSLPLYTQATANTRLVGL 168
I G + RE + + +V+++ L + Q+ L L
Sbjct: 40 ICPG------GGFTYHSGREEAPIATRMMAAGMHTVVLNY---QLIVGDQSVYPWALQQL 90
Query: 169 ELAYFVNYLKDN---YGLNPADVHMIGHSLGAHTAGYAG 204
++++ + ++ + + G S G H
Sbjct: 91 GAT--IDWITTQASAHHVDCQRIILAGFSAGGHVVATYN 127
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 31.2 bits (71), Expect = 0.80
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 3 KKDKEREKERDREEEKGEREKEMRK 27
++ ++ ++ +EK E E E +
Sbjct: 229 QQREQVDRNIREAKEKLEAEMEAAR 253
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.87
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 30/87 (34%)
Query: 190 MIGHSLGAHTAGYAGQAIEGLGRI-TGLDPAEPYFQGMPPFARLDPTDA-----DLVDV- 242
+ GH GA AG A L + +G+ +P D D + V
Sbjct: 1381 LTGHPKGA--AG-AWMMNGALQILNSGI---------IPGNRNADNVDKILEQFEYVLYP 1428
Query: 243 ---IHTDGSSIFL---LGYGMSETCGH 263
+ TDG G+G
Sbjct: 1429 SKTLKTDGVRAVSITSFGFG-----QK 1450
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune
system; 1.71A {Mycobacterium tuberculosis} SCOP:
c.69.1.3
Length = 280
Score = 30.6 bits (69), Expect = 0.97
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 15/146 (10%)
Query: 108 PKKKTKFIIHGFIDTP-LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRL- 165
+++ F P +S+WV + + VV AGG+ +YT +
Sbjct: 32 GGPHAVYLLDAFNAGPDVSNWVTAGNAMNT-LAGKGISVVAPAGGAYSMYTNWEQDGSKQ 90
Query: 166 ----VGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITG-----L 216
+ EL ++L N GL P +G + G + A G L
Sbjct: 91 WDTFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFL 147
Query: 217 DPAEPYFQGMPPFARLDPTDADLVDV 242
P+ G D +
Sbjct: 148 YPSNTTTNGAIAAGMQQFGGVDTNGM 173
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 30.6 bits (69), Expect = 1.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 174 VNYLKDN---YGLNPADVHMIGHSLGAHTAGYAG 204
VN L+ + + ++P + G S+G H
Sbjct: 109 VNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYN 142
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 30.7 bits (69), Expect = 1.1
Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 109 KKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGL 168
+ K ++HG SW K + LL+ + V +D A T L L
Sbjct: 3 EGKHFVLVHGACHGG-WSWYKL--KPLLEAAGHKVTALDLAA----SGTDLRKIEELRTL 55
Query: 169 E--LAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAI-EGLGRITGLDPAEP 221
+ ++ V ++GHSLG G A + + + L P
Sbjct: 56 YDYTLPLMELMESLSADEK--VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMP 109
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 31.0 bits (71), Expect = 1.1
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 254 GYGMSETCGHLDFYPNNGKEQPGCDLTETPLPLTLIK 290
+GM+E C + P ++ P+ +K
Sbjct: 334 IWGMTEACPMVTTNPPLRLDKSTT--QGVPMSDIELK 368
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics
consortium, SGC, aminopeptidase, cleavage on PAIR of
basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB:
3n0t_A*
Length = 469
Score = 31.0 bits (69), Expect = 1.2
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 150 GGSLPLYTQATANTRLVGL-------ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGY 202
G SLP Q+T L + A + L+ + G A G S G + Y
Sbjct: 88 GKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAY 147
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 30.5 bits (69), Expect = 1.2
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 44/163 (26%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVD---------WAGGSLPLYTQATANTRL 165
++HG + L + + R+L +D N+I VD + P
Sbjct: 21 LVHGLFGS-LDNL-GVLARDL--VNDHNIIQVDVRNHGLSPREPVMNYPAM--------- 67
Query: 166 VGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDPA----- 219
A + D ++ IGHS+G A + + ++ +D A
Sbjct: 68 -----AQDLVDTLDALQIDK--ATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYH 120
Query: 220 ----EPYFQGMPPFARLDPT-----DADLVDVIHTDGSSIFLL 253
+ F + + D A + ++ +G FLL
Sbjct: 121 VRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLL 163
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.0 bits (70), Expect = 1.3
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 134 ELLKHSDWNVIVVDWAGGSLPL----YTQATANTRLVGLELAYFVNYLKDNYGLNPADVH 189
+ LK V + + L + + L +++A L + GL P
Sbjct: 525 QALKPLGLRVSDLLLSTDEAVLDDIVSSFVS----LTSIQIALID--LLTSLGLQPD--G 576
Query: 190 MIGHSLGAHTAGYA 203
+IGHSLG GYA
Sbjct: 577 IIGHSLGEVACGYA 590
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 30.6 bits (70), Expect = 1.3
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 162 NTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEP 221
N RL ELA +K ++ ++G A Q+ G I D
Sbjct: 85 NPRLKSAELAE---LIKR------GEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD 135
Query: 222 Y--FQGMPPFARLDPTDADLVDVIHTDG 247
+ PP A + +T G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSG 163
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 30.4 bits (69), Expect = 1.4
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 45/154 (29%)
Query: 116 IHGFID--TPLSSWVKEMRRELLKH--SDWNVIVVDWAG----------GSLPLYTQATA 161
+HG S+W R ++ ++ V+ D G +
Sbjct: 35 LHGAGPGAHAASNW-----RPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMR 89
Query: 162 NTRLVGL--ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL--- 216
+++GL G+ + H++G+S+G +E R +
Sbjct: 90 VEQILGLMNHF-----------GIEKS--HIVGNSMGGAVT--LQLVVEAPERFDKVALM 134
Query: 217 DPAEPYFQGMPP-FARL-----DPTDADLVDVIH 244
PP ARL DP ++IH
Sbjct: 135 GSVGAPMNARPPELARLLAFYADPRLTPYRELIH 168
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 30.6 bits (68), Expect = 1.4
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDW-AGGSLPLYTQATANTRLVGLELAYF 173
I G + E R LL + + + + LP + + L YF
Sbjct: 163 DIFGI-----GGGLLEYRASLLAGHGFATLALAYYNFEDLP--------NNMDNISLEYF 209
Query: 174 ---VNYLKDNYGLNPADVHMIGHSLGAHTA 200
V Y+ + + + ++G SLGA
Sbjct: 210 EEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 30.4 bits (69), Expect = 1.4
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLVGLELAYFV 174
+HGF+ ++ + + ++VI +D G G ++ Y
Sbjct: 22 LHGFLSD-SRTY-HNHIEKFTDN--YHVITIDLPGHG-------EDQSSMDETWNFDYIT 70
Query: 175 NYLK---DNYGLNPADVHMIGHSLGAHTA 200
L D Y + G+S+G A
Sbjct: 71 TLLDRILDKYKDKSI--TLFGYSMGGRVA 97
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
SCOP: c.69.1.3
Length = 304
Score = 30.2 bits (68), Expect = 1.5
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 18/89 (20%)
Query: 125 SSWVKEMRRELLKHSDWNVIVV-----------DWAGGSLPLYTQATAN--TRLVGLELA 171
S W + + VV DW + T T L EL
Sbjct: 50 SGWDINTPAFEW-YDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTS-EL- 106
Query: 172 YFVNYLKDNYGLNPADVHMIGHSLGAHTA 200
+L+ N + P ++G S+ A +A
Sbjct: 107 --PGWLQANRHVKPTGSAVVGLSMAASSA 133
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 30.2 bits (68), Expect = 1.6
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTAGYA 203
+ L ++ + ++G S G + +
Sbjct: 89 YDQLASLPYVDAHSIAVVGLSYGGYLSALL 118
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 30.0 bits (67), Expect = 1.7
Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 26/172 (15%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFV 174
+G P S + H + V + + A + + + Y
Sbjct: 54 WGNGTGAGP--STYAGLLSHWASHG-FVVAAAETSNAGTGREMLACLDYLVRENDTPYGT 110
Query: 175 NYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPP----FA 230
K LN V GHS G + AGQ R+ P +PY G+
Sbjct: 111 YSGK----LNTGRVGTSGHSQGGGGSIMAGQD----TRVRTTAPIQPYTLGLGHDSASQR 162
Query: 231 RLD-PT-----DADLVDVIHTDGSSIFLLG-----YGMSETCGHLDFYPNNG 271
R P D + + + ++ +G H + + G
Sbjct: 163 RQQGPMFLMSGGGDTIAFPYLNAQPVYRRANVPVFWGERRYVSHFEPVGSGG 214
>2vpr_A Tetracycline resistance repressor protein; transcription,
metal-binding, antibiotic resistance, transcr regulator;
HET: TDC; 2.49A {Pasteurella multocida}
Length = 207
Score = 29.8 bits (67), Expect = 1.7
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 18/120 (15%)
Query: 124 LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGL 183
L + K R+ LL + D G+ P + + +L + + G
Sbjct: 79 LRNNAKSFRQALLMYRD----GGKIHAGTRP----SESQFETSEQQLQFLCDA-----GF 125
Query: 184 NPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFAR-----LDPTDAD 238
+ + S+ T G + E + E PP +D + D
Sbjct: 126 SLSQAVYALSSIAHFTLGSVLETQEHQESQKEREKVETDTVAYPPLLTQAVAIMDSDNGD 185
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 30.3 bits (67), Expect = 1.9
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGY----AGQAIEGLGRITGLDP--AEPY 222
L ++ G V ++GHS+G + + + + LD
Sbjct: 113 RLDRVIDEALAESGA--DKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDA 170
Query: 223 FQGMPPFARLDPTDAD 238
+G+P A A
Sbjct: 171 PEGIPTLAVFGNPKAL 186
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 30.0 bits (67), Expect = 2.0
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 108 PKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-GSLPLYTQATANTRLV 166
+K ++H W K + LL+ + V V+ A G P QA
Sbjct: 2 ERKHHFVLVHNAYHGA-WIWYKL--KPLLESAGHRVTAVELAASGIDPRPIQAVETVDEY 58
Query: 167 GLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAI-EGLGRITGLDPAEP 221
L + L +N +V ++G S G A + + L+ P
Sbjct: 59 SKPLIETLKSLPENE-----EVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLP 109
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix,
structural genomics, PSI, protein structur initiative;
2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Length = 213
Score = 29.7 bits (67), Expect = 2.0
Identities = 13/116 (11%), Positives = 23/116 (19%), Gaps = 13/116 (11%)
Query: 124 LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGL 183
S W + R +H + + + A G
Sbjct: 82 FSEWARSYRAAFSRHPT----AIRLLATETVR---DPGSLSVYHSAAAGL-----RGAGF 129
Query: 184 NPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPA-EPYFQGMPPFARLDPTDAD 238
+ + + G A A I + A P A+
Sbjct: 130 PDDHIMAVITAAENFLLGAALDAAAPEVMIEADSTTTDDALTRALAAAPRGPERAE 185
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 29.5 bits (65), Expect = 2.2
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 2 EKKDKEREKERDREEEKGEREKEMRK 27
ER +E+D+ E+ + KE+++
Sbjct: 215 FAAMLERLQEKDKHAEEVRKNKELKE 240
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic
DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38
PDB: 2gzr_A*
Length = 278
Score = 29.6 bits (66), Expect = 2.5
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 176 YLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPA 219
++ ++ + GHS G + + P+
Sbjct: 131 KVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASPS 174
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 29.6 bits (67), Expect = 2.5
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 32/138 (23%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDW--AGGSLPL--YTQATANTRLVGLELA 171
I G +W L + I D G + +T T L +
Sbjct: 49 IAGR-GGAGRTWHPHQVPAFLAA-GYRCITFDNRGIGATENAEGFTTQTMVADTAAL-IE 105
Query: 172 YFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQ--AIEGLGRITGL---------DPAE 220
L+ A ++G S+G + Q + ++ D A
Sbjct: 106 T----------LDIAPARVVGVSMG----AFIAQELMVVAPELVSSAVLMATRGRLDRAR 151
Query: 221 PYFQGMPPFARLDPTDAD 238
+F
Sbjct: 152 QFFNKAEAELYDSGVQLP 169
>2xpw_A Tetracycline repressor protein class D; transcription,
transcription regulator, helix-turn-helix, ME
coordination; HET: OTC MES; 1.44A {Escherichia coli}
PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A*
2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A*
2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A
...
Length = 207
Score = 29.3 bits (66), Expect = 2.6
Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 20/120 (16%)
Query: 124 LSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGL 183
L + RR LL++ D G+ P V +L + G
Sbjct: 78 LRNNAMSFRRALLRYRD----GAKVHLGTRP----DEKQYDTVETQLRFMTEN-----GF 124
Query: 184 NPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFAR-----LDPTDAD 238
+ D ++ T G + E +T A + +PP R +D D +
Sbjct: 125 SLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPD--ENLPPLLREALQIMDSDDGE 182
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 29.0 bits (65), Expect = 3.5
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDW--AGGSLPLYTQATANTRLVGLELAYF 173
+ G + W E R L +VI D G S A ELA
Sbjct: 29 VMGG-NLSALGWPDEFARRLADG-GLHVIRYDHRDTGRSTTRDFAAHPYGFG---ELAAD 83
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTA 200
+ D +G++ A H++G S+GA
Sbjct: 84 AVAVLDGWGVDRA--HVVGLSMGATIT 108
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 29.1 bits (65), Expect = 3.6
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 7/60 (11%)
Query: 189 HMIGHSLGAHTA-------GYAGQAIEGLGRITGLDPAEPYFQGMPPFARLDPTDADLVD 241
+ G+S GA A + D + Y R T +
Sbjct: 86 RVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSPTYVLAYTGSYRAKLTPGCEAE 145
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 28.9 bits (65), Expect = 3.8
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 25/125 (20%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-G--SLPL--YTQATANTRLVGLEL 170
IHG+ PL+ + + + + + + I D G G + Y T
Sbjct: 25 IHGW---PLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFDT---------F 72
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAG-YAGQAIEGLGRITGL---DPAEPYFQGM 226
A +N L + L DV ++ HS+G Y G+ G GR+ P
Sbjct: 73 ADDLNDLLTDLDLR--DVTLVAHSMGGGELARYVGRH--GTGRLRSAVLLSAIPPVMIKS 128
Query: 227 PPFAR 231
Sbjct: 129 DKNPD 133
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 28.6 bits (64), Expect = 4.1
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGL--------GRITGLDPAE 220
EL F++ Y + ++ IG+S GA+ A E +
Sbjct: 102 ELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQL 161
Query: 221 PYFQGMP 227
G
Sbjct: 162 ANLAGKS 168
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 28.7 bits (64), Expect = 4.3
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 7/60 (11%)
Query: 189 HMIGHSLGAHTA-------GYAGQAIEGLGRITGLDPAEPYFQGMPPFARLDPTDADLVD 241
+ G+S GA A + D + Y R T +
Sbjct: 108 RVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSPTYVLAYTQSYRAKLTPGCEAE 167
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 26.6 bits (59), Expect = 5.0
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 22/68 (32%)
Query: 330 YQHFLQGRCFSCGE----NGTGCALMGLEAQKTNHP------------PGSKYYITTGKE 373
+Q C C G + H P +Y G+
Sbjct: 6 FQGSASATCERCKGGFAPAEKIVNSNG----ELYHEQCFVCAQCFQQFPEGLFYEFEGR- 60
Query: 374 VPFCRHHY 381
+C H +
Sbjct: 61 -KYCEHDF 67
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 28.5 bits (64), Expect = 5.2
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 19/97 (19%)
Query: 115 IIHGFIDTPLS--SWVKEMRRELLKHSDWNVIVVDW--AGGS-LPLYTQATANT--RLVG 167
++HG P ++V + L + VI D G S A T V
Sbjct: 59 VLHGG---PGMAHNYVANIAA-LADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVD 114
Query: 168 LELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYA 203
E L G+ H++G S G A
Sbjct: 115 -EFHAVCTAL----GIERY--HVLGQSWGGMLGAEIA 144
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 28.7 bits (63), Expect = 5.3
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 148 WAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLG-AHTAGYAG 204
A LP ++ + L+ + + NYG H IGH+LG +H Y
Sbjct: 129 AAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQ-TLTHEIGHTLGLSHPGDYNA 185
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 28.2 bits (63), Expect = 5.6
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 169 ELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGL--------GRITGLDPAE 220
L V+ L + + L+ + IG+S GA+ A + G
Sbjct: 85 WLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQT 144
Query: 221 PYFQGMP 227
Sbjct: 145 VQLDDKH 151
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 28.5 bits (64), Expect = 6.1
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 12/70 (17%)
Query: 183 LNPADVHMIGHSLGAHTA-GYAGQA---IEGL--------GRITGLDPAEPYFQGMPPFA 230
L ++GHSLGA + A + + + LD E
Sbjct: 131 LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLF 190
Query: 231 RLDPTDADLV 240
+
Sbjct: 191 EDIKAVEAYL 200
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 28.2 bits (63), Expect = 6.9
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 107 DPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDW--AGGSLPLYTQATANT- 163
+ F++HG + V+ D +G SL L T
Sbjct: 22 PVEGPALFVLHGGPGGNAYVL---REGLQDYLEGFRVVYFDQRGSGRSLELPQDPRLFTV 78
Query: 164 -RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRI 213
LV + L G+ ++ H GA A + + G I
Sbjct: 79 DALVE-DTLLLAEAL----GV--ERFGLLAHGFGAVVALEVLRRFPQAEGAI 123
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 28.3 bits (63), Expect = 7.2
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 366 YYITTGKEVPFCRHHYRITLDLARPPRAETWVQ-----GFMRVSLHSDNGVIRNLDLTPN 420
Y K +P R+ Y+I L + + VS + + P
Sbjct: 379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 28.0 bits (63), Expect = 7.6
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 183 LNPADVHMIGHSLGAHTAG-YAGQAIEGLGRITGL 216
L +GHS G Y + ++
Sbjct: 86 LGIQGAVHVGHSTGGGEVVRYMARH--PEDKVAKA 118
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.1 bits (63), Expect = 7.8
Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 27/134 (20%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG-G--SLPL--YTQATANTRLVGLEL 170
IHG+ PLS E + L + + VI D G G S P Y T
Sbjct: 33 IHGW---PLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYDT---------F 80
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAG-YAGQAIEGLGRITGL---DPAEPYFQGM 226
++ L + L +V ++G S+G Y + G RI + PY
Sbjct: 81 TSDLHQLLEQLELQ--NVTLVGFSMGGGEVARYI--STYGTDRIEKVVFAGAVPPYLYKS 136
Query: 227 P--PFARLDPTDAD 238
P LD +
Sbjct: 137 EDHPEGALDDATIE 150
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 28.2 bits (62), Expect = 7.9
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYF- 173
+ G + E R LL + V+ + + Y + L L YF
Sbjct: 179 DMFGT-----GGGLLEYRASLLAGKGFAVMALAY-------YNYEDLPKTMETLHLEYFE 226
Query: 174 --VNYLKDNYGLNPADVHMIGHSLGAHTA 200
+NYL + + V ++G S G
Sbjct: 227 EAMNYLLSHPEVKGPGVGLLGISKGGELC 255
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 28.3 bits (64), Expect = 8.3
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 134 ELLKHSDWNVIVVDWAGGSLPL----YTQATANTRLVGLELAYFVNYLKDNYGLNPADVH 189
E +K V + + ++ + L +++ L GL P +
Sbjct: 527 EAVKPFGLKVSQLLLSTDESTFDDIVHSFVS----LTAIQIGLID--LLSCMGLRPDGI- 579
Query: 190 MIGHSLGAHTAGYA 203
+GHSLG GYA
Sbjct: 580 -VGHSLGEVACGYA 592
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 27.6 bits (61), Expect = 9.5
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 174 VNYLKDNYGLNPADVHMIGHSLGAHTAGY----------AGQAIEGLGRITGLDPAEPYF 223
V + + GHS G H G I + I+ L P
Sbjct: 120 VTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLL 176
Query: 224 QG-MPPFARLDPTDADLVDVI-HTDGSSI-FLLGYGMSET 260
+ M ++D A + + + G +E
Sbjct: 177 RTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 27.3 bits (60), Expect = 9.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 14/45 (31%)
Query: 337 RCFSCGENGTGCALMGLEAQKTNHPPGSKYYITTGKEVPFCRHHY 381
+CF+C + C + PG +++ G FC H
Sbjct: 96 KCFTC----STC--------RNRLVPGDRFHYINGS--LFCEHDR 126
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR
hydrolase inhibitor complex; HET: 4LI; 1.55A
{Streptococcus pneumoniae} PDB: 3str_P* 3sw8_P* 1lm6_A
2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Length = 203
Score = 27.3 bits (61), Expect = 9.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 13 DREEEKGEREKEMRKSSDVLY----IFYIVENETRCYDELGCLNVTRDWYHLIYRPFNI 67
E+GE +E ++Y + + V++ E GCL+V R+ + R +
Sbjct: 90 PNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGE-GCLSVDRNVPGYVVRHARV 147
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis}
PDB: 2os1_A* 3g6n_A 3cmd_A
Length = 188
Score = 27.2 bits (61), Expect = 9.7
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 17 EKGEREKEMRKSSDVLY----IFYIVENETRCYDELGCLNVTRDWYHLIYRPFNI 67
+ E E S V+Y + + V++ E GCL+V RD + R I
Sbjct: 78 PSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGE-GCLSVDRDVPGYVVRHNKI 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.430
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,567,454
Number of extensions: 534744
Number of successful extensions: 1580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 125
Length of query: 531
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 433
Effective length of database: 3,965,535
Effective search space: 1717076655
Effective search space used: 1717076655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.6 bits)