RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy545
(531 letters)
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 361 bits (926), Expect = e-122
Identities = 151/337 (44%), Positives = 193/337 (57%), Gaps = 8/337 (2%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY+++GC + W RP + P I TRF+LYT KNP L + TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF KKT+FIIHGFID +W+ +M + + K + N I VDW GS YTQA N
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNV 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYF 223
R+VG ++A ++ L NY +P+ V +IGHSLGAH AG AG GLGRITGLDP E F
Sbjct: 124 RVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEASF 183
Query: 224 QGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTET 282
QG P RLDPTDAD VDVIHTD I LG+G S+ GHLDF+PN G+E PGC +
Sbjct: 184 QGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCK--KN 241
Query: 283 PLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSCG 342
L + +GI E R VACNH+R+ K ++ESI + + ++ C SY+ F +CF C
Sbjct: 242 ALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCP 301
Query: 343 ENGTGCALMGLEAQK---TNHPPGSKYYITTGKEVPF 376
+ GC MG A K KY++ TG F
Sbjct: 302 DQ--GCPQMGHYADKFAVKTSDETQKYFLNTGDSSNF 336
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 358 bits (919), Expect = e-121
Identities = 152/338 (44%), Positives = 198/338 (58%), Gaps = 9/338 (2%)
Query: 44 CYDELGCLNVTRDWYHLIYRPFNIFPLPRAVIDTRFILYTRKNPTEGHMLKVQNERTIEK 103
CY LGC + + W ++ RP IFP IDTRF+LYT +NP + TI+
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANT 163
SNF +KT+FI+HGFID W+ +M +++ + N I VDW GS YTQA+ NT
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNT 123
Query: 164 RLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEG-LGRITGLDPAEPY 222
R+VG E+A+ V L G +P +VH+IGHSLGAH G AG+ +EG +GRITGLDPAEP
Sbjct: 124 RVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPC 183
Query: 223 FQGMPPFARLDPTDADLVDVIHTD-GSSIFLLGYGMSETCGHLDFYPNNGKEQPGCDLTE 281
FQG+P RLDP+DA VDVIHTD I LG+GMS+ GHLDF+PN GKE PGC +
Sbjct: 184 FQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQ--K 241
Query: 282 TPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTESINSKCPYVAHRCPSYQHFLQGRCFSC 341
L + GI E + VACNH+R+ K + SI + ++ + C SY+ F Q CF C
Sbjct: 242 NILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPC 301
Query: 342 GENGTGCALMGLEAQKTNHPPGS---KYYITTGKEVPF 376
E GC MG A + + Y+ TG F
Sbjct: 302 PEE--GCPKMGHYADQFEGKTATVEQTVYLNTGDSGNF 337
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 48.0 bits (113), Expect = 1e-06
Identities = 33/180 (18%), Positives = 51/180 (28%), Gaps = 17/180 (9%)
Query: 85 KNPTEGHMLKVQNERTIE------KSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKH 138
+ T H+L+V N + + K N K T I GF + L +
Sbjct: 1 QCKTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARR--MDHFAGLAEYLSTN 58
Query: 139 SDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAH 198
++V D T G V + ++ +I SL A
Sbjct: 59 -GFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTK--GTQNIGLIAASLSAR 115
Query: 199 TAGYAGQAIEGLGRITGLDPAEPY------FQGMPPFARLDPTDADLVDVIHTDGSSIFL 252
A +E IT + +D DL H GS +F+
Sbjct: 116 VAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFV 175
>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 112
Score = 42.1 bits (99), Expect = 2e-05
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 378 RHHYRITLDLARPPRAETWVQGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTH 437
R Y++++ L+ V G + VSL + G + ++ + ++ S
Sbjct: 1 RWRYKVSVTLSGKK-----VTGHILVSLFGNKGNSKQYEIFKGTLKP---DSTHSNEFDS 52
Query: 438 PEDVGTINKVEFYWEYD 454
DVG + V+F W +
Sbjct: 53 DVDVGDLQMVKFIWYNN 69
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 43.9 bits (103), Expect = 2e-05
Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 17/148 (11%)
Query: 100 TIEKSNFDPKKKTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQA 159
T + ++ K ++ G T S+ L + + L
Sbjct: 21 TCQGASPSSVSKPILLVPGTGTTGPQSFDSNWIP-LSTQLGYTPCWISPPPFML------ 73
Query: 160 TANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYA----GQAIEGLGRITG 215
+T++ + + L G N + ++ S G A + + R+
Sbjct: 74 -NDTQVNTEYMVNAITALYAGSGNNK--LPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMA 130
Query: 216 LDPAE---PYFQGMPPFARLDPTDADLV 240
P + A P+
Sbjct: 131 FAPDYKGTVLAGPLDALAVSAPSVWQQT 158
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 42.4 bits (98), Expect = 4e-05
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 111 KTKFIIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLEL 170
K +IIHG+ + + W +++ LL +++ P L
Sbjct: 2 KQVYIIHGYRASSTNHWFPWLKKRLLAD-GVQADILNMPNPLQP--------------RL 46
Query: 171 AYFVNYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGLDPAEPYFQGMPPFA 230
+++ L + +++ HSLG + ++ + G+ + + +P
Sbjct: 47 EDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ 106
Query: 231 RL 232
L
Sbjct: 107 ML 108
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 113
Score = 39.5 bits (92), Expect = 1e-04
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 378 RHHYRITLDLARPPRAETWVQGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTH 437
R Y +++ L+ G +V+L G L+ G++ S
Sbjct: 1 RWRYGVSITLSG---KRA--TGQAKVALFGSKGNTHQF---NIFKGILKPGSTHSNEFDA 52
Query: 438 PEDVGTINKVEFYWEYDMDVLQPRSLCFLWCNDHLYVSSIKVTETK 483
DVGTI KV+F W + +V+ P + +++ E K
Sbjct: 53 KLDVGTIEKVKFLW--NNNVVNP-----TFPKVGAAKITVQKGEEK 91
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 36.8 bits (85), Expect = 9e-04
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 378 RHHYRITLDLARPPRAETWVQGFMRVSLHSDNGVIRNLDLTPNGYEKLEHGTSRSFVVTH 437
R Y++++ L+ + G++ V+L+ +NG + ++ L+ +
Sbjct: 1 RWRYKVSVTLSG--AKKL--SGYILVALYGNNGNSKQYEIF---KGSLKPEARHVRDIDV 53
Query: 438 PEDVGTINKVEFYWEYDMDVLQPRSLCFLWCNDHLYVSSIKVTETKD 484
+VG I KV+F W + V+ L S I V D
Sbjct: 54 DINVGEIQKVKFLW--NNKVINL-----FR--PTLGASQITVQSGVD 91
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 37.8 bits (87), Expect = 0.002
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 16/119 (13%)
Query: 104 SNFDPKKKTKFIIHGFIDTPLSSWVKEMRR--ELLKHSDWNVIVVDWAG-GSLPLYTQAT 160
S + K + HG + V L+ V V + + + + +
Sbjct: 1 STYTQTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGE-- 58
Query: 161 ANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAHTA-GYAGQAIEGLGRITGLDP 218
+L V + G V++IGHS G T A + + T +
Sbjct: 59 --------QLLQQVEEIVALSGQPK--VNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107
Score = 27.8 bits (61), Expect = 3.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 154 PLYTQATANTRLVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAH 198
+ TAN LVG ++ ++DNY +N D + G
Sbjct: 220 LTFKNGTANDGLVGTCSSHLGMVIRDNYRMNHLD--EVNQVFGLT 262
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 31.4 bits (70), Expect = 0.17
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 115 IIHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAGGSLPLYTQATANTRLVGLELAYFV 174
++HG ++ L W+ + + T G L+ FV
Sbjct: 7 MVHGIGGAS-FNFAGIKSY--LVSQGWSRDKLYAVD-----FWDKTGTNYNNGPVLSRFV 58
Query: 175 NYLKDNYGLNPADVHMIGHSLGAHTAGYAGQAIEGLGRITGL 216
+ D G V ++ HS+G Y + ++G ++ +
Sbjct: 59 QKVLDETGAKK--VDIVAHSMGGANTLYYIKNLDGGNKVANV 98
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 2.6
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 2 EKKDKEREKERDREEEKGEREKEMRK 27
++ +E+ER + E+E+ +++
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKE 280
Score = 26.2 bits (57), Expect = 9.6
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 1 MEKKDKEREKERDREEEKGEREKEMRK 27
ME+K++ ++ + EK E ++
Sbjct: 234 MEQKERSYQEHLKQLTEKMENDRVQLL 260
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 27.3 bits (60), Expect = 5.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 181 YGLNPADVHMIGHSLGAHTAGYAG 204
+ +NP V + G + G + A G
Sbjct: 6 FNVNPNSVSVSGLASGGYMAAQLG 29
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.4 bits (58), Expect = 5.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 2 EKKDKEREKERDREEEKGEREKEMRK 27
E ++ +R +EK + +E+RK
Sbjct: 107 ENREAHLAAMLERLQEKDKHAEEVRK 132
Score = 26.0 bits (57), Expect = 6.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 2 EKKDKEREKERDREEEKGEREKEMRK 27
EK++ ERE + EE K ++
Sbjct: 71 EKREHEREVIQKAIEENNNFIKMAKE 96
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 26.7 bits (58), Expect = 6.5
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 165 LVGLELAYFVNYLKDNYGLNPADVHMIGHSLGAH 198
LV + F + +Y N D I LG
Sbjct: 265 LVSRCSSLFGQVISTSYHWNHLD--EINQLLGVR 296
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 26.5 bits (58), Expect = 6.5
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 255 YGMSETCGHLDFYPNNGKEQPGCDLTETPLPLTLIKEGIEEAGRVLVACNHVRAIKLFTE 314
GMSE G L + + G ++T + I+E + +V + RA ++ +
Sbjct: 105 LGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRK 164
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 7.0
Identities = 4/34 (11%), Positives = 17/34 (50%)
Query: 5 DKEREKERDREEEKGEREKEMRKSSDVLYIFYIV 38
++E+++ ++ ++ + R+ + Y F +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCEL 135
>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree
(Hevea brasiliensis) [TaxId: 3981]}
Length = 256
Score = 26.4 bits (56), Expect = 9.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 116 IHGFIDTPLSSWVKEMRRELLKHSDWNVIVVDWAG 150
IH +W+ + LL+ V +D A
Sbjct: 8 IHTI---CHGAWIWHKLKPLLEALGHKVTALDLAA 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.430
Gapped
Lambda K H
0.267 0.0359 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,120,338
Number of extensions: 105281
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 26
Length of query: 531
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,171,896
Effective search space: 516806136
Effective search space used: 516806136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (26.0 bits)