BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5450
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WXA|A Chain A, Solution Structure Of Ras-Binding Domain In Mouse Af-6
Protein
Length = 116
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 28 TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETP 87
TL+IY +SL ++PYKT+LLS D A V E L KYGL +E+ YC+ +V +P
Sbjct: 11 TLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARV--MLPPGA 68
Query: 88 NTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132
+ + G +E ILD+DECPL I P + Q K
Sbjct: 69 QHSDERGA-------KEIILDDDECPLQIFREWPSDKGILVFQLK 106
>pdb|3EC8|A Chain A, The Crystal Structure Of The Ra Domain Of Flj10324
(Radil)
Length = 166
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV 79
G LK++G+S+C YK++L + +A ++VKE L +Y L A QY L V
Sbjct: 36 GVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDV 88
>pdb|1EF5|A Chain A, Solution Structure Of The Ras-Binding Domain Of Rgl
Length = 103
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT-----AIPETPNT 89
YK+++L+ +D V++ ++K+ L + A +Y LVQV + IP++ N
Sbjct: 33 YKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANV 85
>pdb|1RLF|A Chain A, Structure Determination Of The Ras-Binding Domain Of The
Ral-Specific Guanine Nucleotide Exchange Factor Rlf,
Nmr, 10 Structures
Length = 90
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV-----NTAIPETPNT--AQQNG 94
YK++L++ +D A V+ +L K A ++ LVQ+ IP + N A
Sbjct: 21 YKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGDRELTIPHSANVFYAMDGA 80
Query: 95 GDQFMNNQR 103
F+ QR
Sbjct: 81 SHDFLLRQR 89
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 41 PYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81
PY T+L + N T E+L+ + +T EDA +Y + N+
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 36 LCRDVPYKTLLLSVRDNATQVVKEMLAKYGLT 67
L D P+ L +RD+A +VKE+ ++ G+T
Sbjct: 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 36 LCRDVPYKTLLLSVRDNATQVVKEMLAKYGLT 67
L D P+ L +RD+A +VKE+ ++ G+T
Sbjct: 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,620,644
Number of Sequences: 62578
Number of extensions: 126143
Number of successful extensions: 289
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)